At 15o C 11,535 transcripts had expression level two fold or above when compared with transcripts
at 25 degree C. Out of these 11535 transcripts the pathways informations were available for 348
unique genes in PMN[1]. The assembled transcripts, homologs, PMN pathway accession numbers
and pathway names are given below. Mapping for different genes with various pathways resulted
into 664 different metabolic pathway versus gene maps, made available as a zip file at
http://scbb.ihbt.res.in/podo-path.zip .
Scaffold
Homolog
PMN pathway
accession number
Pathway name
C584340_46.0
ATCG00500
PWY-4381
fatty acid biosynthesis
initiation I
C584340_46.0
ATCG00500
PWY-5156
superpathway of fatty acid
biosynthesis II (plant)
C585108_30.0
AT5G16715
TRNA-CHARGING- tRNA charging pathway
PWY
C595030_116.0
AT5G20980
PWY-2201
folate transformations
C595030_116.0
AT5G20980
PWY-3841
formylTHF biosynthesis II
C595030_116.0
AT5G20980
PWY-5041
<i>S</i>-adenosyl-Lmethionine cycle II
C595030_116.0
AT5G20980
PWY-702
methionine biosynthesis II
C595030_116.0
AT5G20980
PWY-724
superpathway of lysine,
threonine and methionine
biosynthesis II
C599004_59.0
AT3G04120
PWY-1042
glycolysis IV (plant
cytosol)
C599004_59.0
AT3G04120
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
C599004_59.0
AT3G04120
PWY-5454
superpathway of sucrose
degradation to pyruvate
C599004_59.0
AT3G04120
PWY-5464-PLANT
superpathway of cytosolic
glycolysis (plants), pyruvate
dehydrogenase and TCA
cycle
C599004_59.0
AT3G04120
PWYQT-4428
gluconeogenesis
C602708_44.0
AT4G02500
PWY-5936
xyloglucan biosynthesis
C606080_15.0
ATMG01120
PWY-3781
aerobic respiration -electron donor II
C606080_15.0
ATMG01120
PWY-4302
aerobic respiration -electron donor III
C606080_15.0
ATMG01120
PWY-5083
NAD/NADH
phosphorylation and
dephosphorylation
C608974_58.0
AT4G21990
SULFMETII-PWY
sulfate reduction II
(assimilatory)
C609900_30.0
AT5G49810
PWY-5441
S-methylmethionine cycle
C614150_40.0
AT2G33150
PWY-5136
fatty acid &beta;-oxidation
II (core pathway)
C614150_40.0
AT2G33150
PWY-561
superpathway of glyoxylate
cycle
C614150_40.0
AT2G33150
PWY-735
jasmonic acid biosynthesis
C615612_188.0
AT5G05170
PWY-1001
cellulose biosynthesis
C617832_50.0
ATCG00340
PHOTOALL-PWY
oxygenic photosynthesis
C617832_50.0
ATCG00340
PWY-101
photosynthesis light
reactions
C624022_50.0
AT1G52570
LIPASYN-PWY
phospholipases
C624022_50.0
AT1G52570
PWY-3561
choline biosynthesis III
C624022_50.0
AT1G52570
PWY-4762
superpathway of choline
biosynthesis
C625602_30.0
AT3G08510
LIPASYN-PWY
phospholipases
C627156_118.0
AT5G17920
PWY-5041
<i>S</i>-adenosyl-Lmethionine cycle II
C627156_118.0
AT5G17920
PWY-702
methionine biosynthesis II
C627156_118.0
AT5G17920
PWY-724
superpathway of lysine,
threonine and methionine
biosynthesis II
C632284_30.0
ATMG00220
PWY-3781
aerobic respiration -electron donor II
C635526_177.0
AT4G39800
PWY-2301
<i>myo</i>-inositol
biosynthesis
C635526_177.0
AT4G39800
PWY-4661
1D-<i>myo</i>-inositol
hexakisphosphate
biosynthesis III
(<i>Spirodela
polyrrhiza</i>)
C636844_40.0
AT4G02290
PWY-1001
cellulose biosynthesis
C638182_50.0
AT3G20440
PWY-622
starch biosynthesis
C638182_50.0
AT3G20440
PWYQT-4466
superpathway of sucrose
and starch metabolism I
(non-photosynthetic tissue)
C644808_60.0
ATCG00350
PHOTOALL-PWY
oxygenic photosynthesis
C644808_60.0
ATCG00350
PWY-101
photosynthesis light
reactions
C650658_40.0
ATCG00350
PHOTOALL-PWY
oxygenic photosynthesis
C650658_40.0
ATCG00350
PWY-101
photosynthesis light
reactions
C650932_70.0
AT1G10700
PWY0-662
PRPP biosynthesis I
C653682_50.0
AT3G18850
PHOSLIPSYN2-PWY phospholipid biosynthesis II
C653682_50.0
AT3G18850
PWY0-1319
CDP-diacylglycerol
biosynthesis II
C653682_50.0
AT3G18850
PWY4FS-7
phosphatidylglycerol
biosynthesis I (plastid)
C653682_50.0
AT3G18850
PWY4FS-8
phosphatidylglycerol
biosynthesis II
C653682_50.0
AT3G18850
PWY-5667
CDP-diacylglycerol
biosynthesis I
C653682_50.0
AT3G18850
TRIGLSYN-PWY
triacylglycerol biosynthesis
C654104_50.0
ATMG00730
PWY-3781
aerobic respiration -electron donor II
C654160_29.0
AT5G49810
PWY-5441
S-methylmethionine cycle
C662180_98.0
AT1G32900
PWY-622
starch biosynthesis
C662180_98.0
AT1G32900
PWYQT-4466
superpathway of sucrose
and starch metabolism I
(non-photosynthetic tissue)
C663380_144.0
AT1G56600
PWY-5337
stachyose biosynthesis
C664408_30.0
AT4G38190
PWY-1001
cellulose biosynthesis
C668020_117.0
AT2G22240
PWY-2301
<i>myo</i>-inositol
biosynthesis
C668020_117.0
AT2G22240
PWY-4661
1D-<i>myo</i>-inositol
hexakisphosphate
biosynthesis III
(<i>Spirodela
polyrrhiza</i>)
C668288_50.0
AT5G44030
PWY-1001
cellulose biosynthesis
C675406_40.0
AT1G73980
PWYQT-4445
pyrimidine salvage pathway
C676096_40.0
ATCG00340
PHOTOALL-PWY
oxygenic photosynthesis
C676096_40.0
ATCG00340
PWY-101
photosynthesis light
reactions
C676930_95.0
AT1G09780
GLYCOLYSIS
glycolysis I (plastidic)
C676930_95.0
AT1G09780
PWY-1042
glycolysis IV (plant
cytosol)
C676930_95.0
AT1G09780
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
C676930_95.0
AT1G09780
PWY-5454
superpathway of sucrose
degradation to pyruvate
C676930_95.0
AT1G09780
PWY-5455
superpathway of starch
degradation to pyruvate
C676930_95.0
AT1G09780
PWY-5464-PLANT
superpathway of cytosolic
glycolysis (plants), pyruvate
dehydrogenase and TCA
cycle
C676930_95.0
AT1G09780
PWY-5723
Rubisco shunt
C676930_95.0
AT1G09780
PWYQT-4428
gluconeogenesis
C677058_40.0
ATMG00730
PWY-3781
aerobic respiration -electron donor II
C677476_50.0
AT2G29750
PWY-5272
abscisic acid glucose ester
biosynthesis
C677476_50.0
AT2G29750
PWY-5321
quercetin glucoside
biosynthesis (Arabidopsis)
C677476_50.0
AT2G29750
PWY-6266-ARA
superpathway of flavones
and derivatives biosynthesis
C679946_50.0
AT4G13360
PWY-3941
&beta;-alanine biosynthesis
II
C679946_50.0
AT4G13360
VALDEG-PWY
valine degradation I
C682926_85.0
AT3G43600
PWY-6299
aldehyde oxidation I
C683330_73.0
ATMG00510
PWY-3781
aerobic respiration -electron donor II
C683330_73.0
ATMG00510
PWY-4302
aerobic respiration -electron donor III
C683330_73.0
ATMG00510
PWY-5083
NAD/NADH
phosphorylation and
dephosphorylation
C687784_189.0
AT5G05170
PWY-1001
cellulose biosynthesis
C689570_90.0
AT3G11430
PHOSLIPSYN2-PWY phospholipid biosynthesis II
C689570_90.0
AT3G11430
PWY0-1319
CDP-diacylglycerol
biosynthesis II
C689570_90.0
AT3G11430
PWY4FS-7
phosphatidylglycerol
biosynthesis I (plastid)
C689570_90.0
AT3G11430
PWY4FS-8
phosphatidylglycerol
biosynthesis II
C689570_90.0
AT3G11430
PWY-5667
CDP-diacylglycerol
biosynthesis I
C689570_90.0
AT3G11430
TRIGLSYN-PWY
triacylglycerol biosynthesis
C695074_60.0
AT1G02800
PWY-1001
cellulose biosynthesis
C695096_110.0
AT5G23310
DETOX1-PWY
superoxide radicals
degradation
C695278_80.0
AT5G21100
PWY-2261
ascorbate glutathione cycle
C699872_70.0
ATCG00340
PHOTOALL-PWY
oxygenic photosynthesis
C699872_70.0
ATCG00340
PWY-101
photosynthesis light
reactions
C700084_113.0
AT4G34050
PWY-1121
suberin biosynthesis
C700084_113.0
AT4G34050
PWY-361
phenylpropanoid
biosynthesis
C700084_113.0
AT4G34050
PWY4FS-9
scopoletin biosynthesis
C702886_90.0
AT3G03900
PWY-5340
sulfate activation for
sulfonation
C705332_138.0
AT3G27060
DENOVOPURINE3- purine nucleotide
PWY
metabolism
(phosphotransfer and
nucleotide modification)
C705332_138.0
AT3G27060
PWY0-166
pyrimidine
deoxyribonucleotides <i>de
novo</i> biosynthesis
C710100_100.0
AT1G61850
LIPASYN-PWY
phospholipases
C711530_90.0
AT4G33150
LYSINE-DEG2-PWY lysine degradation II
C714902_10.0
AT3G56940
CHLOROPHYLLSYN
chlorophyllide <i>a</i>
biosynthesis I
C716194_70.0
AT5G18860
PWY-5043
purine nucleosides salvage
II (plant)
C716194_70.0
AT5G18860
PWY-5044
purine nucleotides
degradation I (plants)
C716194_70.0
AT5G18860
PWY-6596
adenosine nucleotides
degradation I
C716194_70.0
AT5G18860
PWY-6605
adenine and adenosine
salvage II
C717660_148.0
AT3G27060
DENOVOPURINE3- purine nucleotide
PWY
metabolism
(phosphotransfer and
nucleotide modification)
C717660_148.0
AT3G27060
PWY0-166
C718558_62.0
AT5G14850
MANNOSYLdolichylCHITO-DOLICHOL- diphosphooligosaccharide
BIOSYNTHESIS
biosynthesis
C720144_180.0
AT2G32990
PWY-1001
cellulose biosynthesis
C721436_235.0
AT2G45790
PWY-5659
GDP-mannose biosynthesis
C721436_235.0
AT2G45790
PWY-882
ascorbate biosynthesis I (Lgalactose pathway)
C723956_146.0
AT2G01140
CALVIN-PWY
Calvin-Benson-Bassham
pyrimidine
deoxyribonucleotides <i>de
novo</i> biosynthesis
cycle
C723956_146.0
AT2G01140
GLYCOLYSIS
glycolysis I (plastidic)
C723956_146.0
AT2G01140
PHOTOALL-PWY
oxygenic photosynthesis
C723956_146.0
AT2G01140
PWY-5455
superpathway of starch
degradation to pyruvate
C723956_146.0
AT2G01140
PWYQT-4428
gluconeogenesis
C726274_27.0
AT3G03780
PWY-5041
<i>S</i>-adenosyl-Lmethionine cycle II
C726274_27.0
AT3G03780
PWY-702
methionine biosynthesis II
C726274_27.0
AT3G03780
PWY-724
superpathway of lysine,
threonine and methionine
biosynthesis II
C726500_60.0
AT5G44030
PWY-1001
cellulose biosynthesis
C726652_5.0
AT3G23920
PWY-5455
superpathway of starch
degradation to pyruvate
C726652_5.0
AT3G23920
PWY-842
starch degradation
C726652_5.0
AT3G23920
PWYQT-4467
superpathway of sucrose
and starch metabolism II
(photosynthetic tissue)
C727636_152.0
AT5G55120
PWY-882
ascorbate biosynthesis I (Lgalactose pathway)
C730042_49.0
AT2G36530
GLYCOLYSIS
glycolysis I (plastidic)
C730042_49.0
AT2G36530
PWY-1042
glycolysis IV (plant
cytosol)
C730042_49.0
AT2G36530
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
C730042_49.0
AT2G36530
PWY-5454
superpathway of sucrose
degradation to pyruvate
C730042_49.0
AT2G36530
PWY-5455
superpathway of starch
degradation to pyruvate
C730042_49.0
AT2G36530
PWY-5464-PLANT
superpathway of cytosolic
glycolysis (plants), pyruvate
dehydrogenase and TCA
cycle
C730042_49.0
AT2G36530
PWY-5723
Rubisco shunt
C730042_49.0
AT2G36530
PWYQT-4428
gluconeogenesis
C731306_109.0
AT5G17920
PWY-5041
<i>S</i>-adenosyl-Lmethionine cycle II
C731306_109.0
AT5G17920
PWY-702
methionine biosynthesis II
C731306_109.0
AT5G17920
PWY-724
superpathway of lysine,
threonine and methionine
biosynthesis II
C733688_160.0
AT2G06925
LIPASYN-PWY
phospholipases
C736230_70.0
AT1G06730
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
C736230_70.0
AT1G06730
PWY-5454
superpathway of sucrose
degradation to pyruvate
C736230_70.0
AT1G06730
PWY-621
sucrose degradation III
C736230_70.0
AT1G06730
PWYQT-4466
superpathway of sucrose
and starch metabolism I
(non-photosynthetic tissue)
C736712_230.0
AT1G79690
NONMEVIPP-PWY
methylerythritol phosphate
pathway
C736712_230.0
AT1G79690
PWY-5121
superpathway of
geranylgeranyldiphosphate
biosynthesis II (via MEP)
C736712_230.0
AT1G79690
PWY-5123
<i>trans,trans</i>-farnesyl
diphosphate biosynthesis
C736712_230.0
AT1G79690
PWY-5910
superpathway of
geranylgeranyldiphosphate
biosynthesis I (via
mevalonate)
C736712_230.0
AT1G79690
PWY-922
mevalonate pathway I
C737978_141.0
AT4G20150
PWY-3781
aerobic respiration -electron donor II
C737978_141.0
AT4G20150
PWY-4302
aerobic respiration -electron donor III
C737978_141.0
AT4G20150
PWY-5083
NAD/NADH
phosphorylation and
dephosphorylation
C739107_160.0
AT5G15470
PWY-1061
homogalacturonan
biosynthesis
C743077_70.0
AT5G04040
LIPAS-PWY
triacylglycerol degradation
C745513_11.0
AT2G47180
PWY-5337
stachyose biosynthesis
C745809_80.0
AT2G26870
LIPASYN-PWY
phospholipases
C746881_40.0
AT5G16715
TRNA-CHARGING- tRNA charging pathway
PWY
C747223_130.0
AT2G25870
PWY4FS-11
ascorbate biosynthesis II
(L-gulose pathway)
C747223_130.0
AT2G25870
TRESYN-PWY
trehalose biosynthesis I
C749363_46.0
AT5G16120
PWY-6196
serine racemization
C749673_191.0
AT2G41490
MANNOSYLdolichylCHITO-DOLICHOL- diphosphooligosaccharide
BIOSYNTHESIS
biosynthesis
C750249_210.0
AT4G33580
CYANCAT-PWY
cyanate degradation
C754457_129.0
AT1G19920
PWY-5340
sulfate activation for
sulfonation
C754457_129.0
AT1G19920
SULFMETII-PWY
sulfate reduction II
(assimilatory)
C756859_198.0
AT1G69830
PWY-5455
superpathway of starch
degradation to pyruvate
C756859_198.0
AT1G69830
PWY-842
starch degradation
C756859_198.0
AT1G69830
PWYQT-4467
superpathway of sucrose
and starch metabolism II
(photosynthetic tissue)
C758543_120.0
AT5G05580
PWY-762
phospholipid desaturation
C758543_120.0
AT5G05580
PWY-782
glycolipid desaturation
C758971_23.0
AT5G54080
TYRFUMCAT-PWY
tyrosine degradation I
C759343_158.0
AT4G00110
PWY-4861
UDP-D-galacturonate
biosynthesis I (from UDPD-glucuronate)
C759343_158.0
AT4G00110
PWY-5114
UDP-sugars interconversion
C759885_4.0
AT5G37850
PLPSAL-PWY
pyridoxal 5'-phosphate
salvage pathway
C760431_238.0
AT4G02320
PWY-1081
homogalacturonan
degradation
C762239_75.0
AT2G27820
COMPLETE-AROARA-PWY
superpathway of
phenylalanine, tyrosine and
tryptophan biosynthesis
C762239_75.0
AT2G27820
PWY-3462
phenylalanine biosynthesis
II
C762239_75.0
AT2G27820
PWY-3481
superpathway of
phenylalanine and tyrosine
biosynthesis
C762395_196.0
AT3G50790
PWY-6196
serine racemization
C762397_63.0
AT3G14310
PWY-1081
homogalacturonan
degradation
C762695_128.0
AT5G08415
PWY0-501
lipoate biosynthesis and
incorporation I
C763013_220.0
AT2G19940
ARGSYNBSUBPWY
arginine biosynthesis II
(acetyl cycle)
C763013_220.0
AT2G19940
ARGSYN-PWY
arginine biosynthesis I
C763013_220.0
AT2G19940
GLUTORN-PWY
ornithine biosynthesis
C763175_211.0
AT5G48930
PWY-361
phenylpropanoid
biosynthesis
C763175_211.0
AT5G48930
PWY-5868
simple coumarins
biosynthesis
C763845_12.0
AT3G17810
PWY-3982
uracil degradation
(reductive)
C764009_164.0
AT1G01090
PWY-5173
superpathway of acetylCoA biosynthesis
C764009_164.0
AT1G01090
PWY-5464-PLANT
superpathway of cytosolic
glycolysis (plants), pyruvate
dehydrogenase and TCA
cycle
C764009_164.0
AT1G01090
PWYQT-4481
TCA cycle variation V
(plant)
C764009_164.0
AT1G01090
PYRUVDEHYDPWY
acetyl-CoA biosynthesis
(from pyruvate)
C764013_196.0
AT1G74470
PWY-5063
phytyl diphosphate
biosynthesis
C764013_196.0
AT1G74470
PWY-5064
chlorophyll <i>a</i>
biosynthesis II
C764013_196.0
AT1G74470
PWY-5863
superpathway of
phylloquinone biosynthesis
C764207_97.0
AT1G72810
HOMOSERTHRESYN-PWY
threonine biosynthesis from
homoserine
C764207_97.0
AT1G72810
PWY-3001
isoleucine biosynthesis I
C764207_97.0
AT1G72810
PWY-724
superpathway of lysine,
threonine and methionine
biosynthesis II
C764207_97.0
AT1G72810
THRESYN-PWY
threonine biosynthesis
C764673_52.0
AT1G76160
PWY-2261
ascorbate glutathione cycle
C764683_68.0
AT3G52990
GLYCOLYSIS
glycolysis I (plastidic)
C764683_68.0
AT3G52990
PWY-1042
glycolysis IV (plant
cytosol)
C764683_68.0
AT3G52990
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
C764683_68.0
AT3G52990
PWY-5454
superpathway of sucrose
degradation to pyruvate
C764683_68.0
AT3G52990
PWY-5455
superpathway of starch
degradation to pyruvate
C764683_68.0
AT3G52990
PWY-5464-PLANT
superpathway of cytosolic
glycolysis (plants), pyruvate
dehydrogenase and TCA
cycle
C764683_68.0
AT3G52990
PWY-5723
Rubisco shunt
C765269_106.0
AT1G74960
FASYN-ELONGPWY
fatty acid elongation -saturated
C765269_106.0
AT1G74960
PWY-5156
superpathway of fatty acid
biosynthesis II (plant)
C765269_106.0
AT1G74960
PWY-5971
palmitate biosynthesis II
(bacteria and plants)
C765269_106.0
AT1G74960
PWY-5989
stearate biosynthesis II
(plants)
C765457_56.0
AT3G05970
PWY-5136
fatty acid &beta;-oxidation
II (core pathway)
C765457_56.0
AT3G05970
PWY-5143
fatty acid activation
C765457_56.0
AT3G05970
PWY-561
superpathway of glyoxylate
cycle
C765457_56.0
AT3G05970
PWY-5995
linoleate biosynthesis I
(plants)
scaffold10175_147.0
AT1G48520
PWY490-4
asparagine biosynthesis III
(tRNA-dependent)
scaffold10277_71.6
AT1G79460
PWY-5032
<i>ent</i>-kaurene
biosynthesis
scaffold10277_71.6
AT1G79460
PWY-5053
superpathway of
GA<sub>12</sub>
biosynthesis
scaffold10476_41.3
AT2G13560
PWYQT-4481
TCA cycle variation V
(plant)
scaffold10480_24.5
AT2G22240
PWY-2301
<i>myo</i>-inositol
biosynthesis
scaffold10480_24.5
AT2G22240
PWY-4661
1D-<i>myo</i>-inositol
hexakisphosphate
biosynthesis III
(<i>Spirodela
polyrrhiza</i>)
scaffold10779_140.0
AT3G61440
ASPSYNII-PWY
cyanide detoxification
scaffold10779_140.0
AT3G61440
P401-PWY
cyanide degradation
scaffold10783_105.6
AT3G61880
PWY1F-823
leucopelargonidin and
leucocyanidin biosynthesis
scaffold10783_105.6
AT3G61880
PWY-3101
flavonol biosynthesis
scaffold10783_105.6
AT3G61880
PWY-5060
luteolin biosynthesis
scaffold10783_105.6
AT3G61880
PWY-5152
leucodelphinidin
biosynthesis
scaffold10783_105.6
AT3G61880
PWY-6266-ARA
superpathway of flavones
and derivatives biosynthesis
scaffold10803_47.9
AT1G58440
PWY-2541
plant sterol biosynthesis I
scaffold10803_47.9
AT1G58440
PWY-5670
epoxysqualene biosynthesis
scaffold10803_47.9
AT1G58440
PWY66-341
cholesterol biosynthesis I
scaffold10803_47.9
AT1G58440
PWY-6663
plant sterol biosynthesis II
scaffold10897_114.9
AT5G26780
GLYSYN2-PWY
glycine biosynthesis
scaffold10897_114.9
AT5G26780
PWY-181
photorespiration
scaffold10897_114.9
AT5G26780
PWY-2161
folate polyglutamylation I
scaffold10897_114.9
AT5G26780
PWY-2201
folate transformations
scaffold10897_114.9
AT5G26780
PWY-3841
formylTHF biosynthesis II
scaffold11074_46.3
AT3G47390
RIBOSYN2-PWY
flavin biosynthesis I
(bacteria and plants)
scaffold1109_76.3
AT3G11430
PHOSLIPSYN2-PWY phospholipid biosynthesis II
scaffold1109_76.3
AT3G11430
PWY0-1319
CDP-diacylglycerol
biosynthesis II
scaffold1109_76.3
AT3G11430
PWY4FS-7
phosphatidylglycerol
biosynthesis I (plastid)
scaffold1109_76.3
AT3G11430
PWY4FS-8
phosphatidylglycerol
biosynthesis II
scaffold1109_76.3
AT3G11430
PWY-5667
CDP-diacylglycerol
biosynthesis I
scaffold1109_76.3
AT3G11430
TRIGLSYN-PWY
triacylglycerol biosynthesis
scaffold11135_63.1
AT3G11710
TRNA-CHARGING- tRNA charging pathway
PWY
scaffold11147_135.6
AT1G32900
PWY-622
starch biosynthesis
scaffold11147_135.6
AT1G32900
PWYQT-4466
superpathway of sucrose
and starch metabolism I
(non-photosynthetic tissue)
scaffold11170_87.8
AT4G36770
PWY-116
coniferin metabolism
scaffold11170_87.8
AT4G36770
PWY-83
monolignol glucosides
biosynthesis
scaffold11193_57.8
AT2G36310
PWY-5043
purine nucleosides salvage
II (plant)
scaffold11193_57.8
AT2G36310
PWY-5044
purine nucleotides
degradation I (plants)
scaffold11193_57.8
AT2G36310
PWY-6556
pyrimidine ribonucleosides
degradation II
scaffold11193_57.8
AT2G36310
PWY-6595
superpathway of guanosine
nucleotides degradation
(plants)
scaffold11193_57.8
AT2G36310
PWY-6596
adenosine nucleotides
degradation I
scaffold11193_57.8
AT2G36310
PWY-6605
adenine and adenosine
salvage II
scaffold11193_57.8
AT2G36310
PWY-6607
guanosine nucleotides
degradation I
scaffold11193_57.8
AT2G36310
PWYQT-4445
pyrimidine salvage pathway
scaffold11208_51.2
ATCG00350
PHOTOALL-PWY
oxygenic photosynthesis
scaffold11208_51.2
ATCG00350
PWY-101
photosynthesis light
reactions
scaffold11407_153.6
AT3G53260
PWY-1121
suberin biosynthesis
scaffold11407_153.6
AT3G53260
PWY1F-467
phenylpropanoid
biosynthesis, initial
reactions
scaffold11407_153.6
AT3G53260
PWY-6444
benzoate biosynthesis II
(CoA-independent, non&beta;-oxidative)
scaffold11407_153.6
AT3G53260
PWY-6457
<i>trans</i>-cinnamoylCoA biosynthesis
scaffold11461_92.3
AT2G37040
PWY-1121
suberin biosynthesis
scaffold11461_92.3
AT2G37040
PWY1F-467
phenylpropanoid
biosynthesis, initial
reactions
scaffold11461_92.3
AT2G37040
PWY-6444
benzoate biosynthesis II
(CoA-independent, non&beta;-oxidative)
scaffold11461_92.3
AT2G37040
PWY-6457
<i>trans</i>-cinnamoylCoA biosynthesis
scaffold1156_54.3
AT1G01050
PWYQT-4437
UDP-glucose biosynthesis
(from glucose 6-phosphate)
scaffold12031_128.2
AT1G78680
PWY-2161B-PMN
folate polyglutamylation II
scaffold12111_65.4
AT1G28130
PWY-1782
superpathway of IAA
conjugate biosynthesis
scaffold12111_65.4
AT1G28130
PWY-2021
IAA degradation IV
scaffold12111_65.4
AT1G28130
PWY-6219
indole-3-acetyl-amino acid
biosynthesis
scaffold12150_150.7
AT1G19920
PWY-5340
sulfate activation for
sulfonation
scaffold12150_150.7
AT1G19920
SULFMETII-PWY
sulfate reduction II
(assimilatory)
scaffold122_90.1
AT5G66920
PWY-2261
ascorbate glutathione cycle
scaffold12349_106.5
AT4G18240
PWY-622
starch biosynthesis
scaffold12349_106.5
AT4G18240
PWYQT-4466
superpathway of sucrose
and starch metabolism I
(non-photosynthetic tissue)
scaffold12389_110.2
AT4G27560
PWY-5321
quercetin glucoside
biosynthesis (Arabidopsis)
scaffold12389_110.2
AT4G27560
PWY-6266-ARA
superpathway of flavones
and derivatives biosynthesis
scaffold12512_77.0
AT3G22890
PWY-5340
sulfate activation for
sulfonation
scaffold12512_77.0
AT3G22890
SULFMETII-PWY
sulfate reduction II
(assimilatory)
scaffold12555_36.6
AT4G34860
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold12555_36.6
AT4G34860
PWY-5454
superpathway of sucrose
degradation to pyruvate
scaffold12555_36.6
AT4G34860
PWY-621
sucrose degradation III
scaffold12555_36.6
AT4G34860
PWYQT-4466
superpathway of sucrose
and starch metabolism I
(non-photosynthetic tissue)
scaffold12658_109.4
AT3G24170
GLUT-REDOX-PWY glutathione redox reactions
II
scaffold12658_109.4
AT3G24170
PWY-2261
ascorbate glutathione cycle
scaffold12658_109.4
AT3G24170
PWY-4081
glutathione redox reactions
I
scaffold12766_46.0
AT4G25420
PWY-5035
gibberellin biosynthesis III
(early C-13 hydroxylation)
scaffold12766_46.0
AT4G25420
PWY-5036
gibberellin biosynthesis II
(early C-3 hydroxylation)
scaffold12766_46.0
AT4G25420
PWY-5052
superpathway of gibberellin
biosynthesis
scaffold12766_46.0
AT4G25420
PWY-5070
gibberellin biosynthesis I
(non C-3, non C-13
hydroxylation)
scaffold12940_115.7
AT5G17920
PWY-5041
<i>S</i>-adenosyl-Lmethionine cycle II
scaffold12940_115.7
AT5G17920
PWY-702
methionine biosynthesis II
scaffold12940_115.7
AT5G17920
PWY-724
superpathway of lysine,
threonine and methionine
biosynthesis II
scaffold12963_115.0
AT1G15950
PWY-361
phenylpropanoid
biosynthesis
scaffold13020_138.7
AT4G25840
RIBOSYN2-PWY
flavin biosynthesis I
(bacteria and plants)
scaffold13088_149.3
AT3G26380
PWY0-1301
melibiose degradation
scaffold13336_80.5
AT2G37040
PWY-1121
suberin biosynthesis
scaffold13336_80.5
AT2G37040
PWY1F-467
phenylpropanoid
biosynthesis, initial
reactions
scaffold13336_80.5
AT2G37040
PWY-6444
benzoate biosynthesis II
(CoA-independent, non&beta;-oxidative)
scaffold13336_80.5
AT2G37040
PWY-6457
<i>trans</i>-cinnamoylCoA biosynthesis
scaffold13886_88.1
AT1G68010
PWY-181
photorespiration
scaffold14036_181.1
AT2G43820
PWY-6624
salicylate glucosides
biosynthesis III
scaffold14036_181.1
AT2G43820
PWY-6762
salicylate glucosides
biosynthesis IV
scaffold14044_86.0
AT3G13490
TRNA-CHARGING- tRNA charging pathway
PWY
scaffold14338_94.2
AT5G56350
GLYCOLYSIS
glycolysis I (plastidic)
scaffold14338_94.2
AT5G56350
PWY-1042
glycolysis IV (plant
cytosol)
scaffold14338_94.2
AT5G56350
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold14338_94.2
AT5G56350
PWY-5454
superpathway of sucrose
degradation to pyruvate
scaffold14338_94.2
AT5G56350
PWY-5455
superpathway of starch
degradation to pyruvate
scaffold14338_94.2
AT5G56350
PWY-5464-PLANT
superpathway of cytosolic
glycolysis (plants), pyruvate
dehydrogenase and TCA
cycle
scaffold14338_94.2
AT5G56350
PWY-5723
Rubisco shunt
scaffold1472_32.7
AT3G47390
RIBOSYN2-PWY
flavin biosynthesis I
(bacteria and plants)
scaffold14808_58.9
AT5G37830
PWY-4041
&gamma;-glutamyl cycle
scaffold14808_58.9
AT5G37830
PWYQT-4470
&gamma;-glutamyl cycle
(plant pathway)
scaffold15327_143.2
AT4G04350
TRNA-CHARGING- tRNA charging pathway
PWY
scaffold15362_39.4
AT5G49810
PWY-5441
S-methylmethionine cycle
scaffold15368_111.4
AT5G17920
PWY-5041
<i>S</i>-adenosyl-Lmethionine cycle II
scaffold15368_111.4
AT5G17920
PWY-702
methionine biosynthesis II
scaffold15368_111.4
AT5G17920
PWY-724
superpathway of lysine,
threonine and methionine
biosynthesis II
scaffold15426_78.2
AT3G13930
PWY-5173
superpathway of acetylCoA biosynthesis
scaffold15426_78.2
AT3G13930
PWY-5464-PLANT
superpathway of cytosolic
glycolysis (plants), pyruvate
dehydrogenase and TCA
cycle
scaffold15426_78.2
AT3G13930
PYRUVDEHYDPWY
acetyl-CoA biosynthesis
(from pyruvate)
scaffold15940_128.6
AT2G23420
PWY-5381
pyridine nucleotide cycling
(plants)
scaffold16012_84.2
AT2G36530
GLYCOLYSIS
glycolysis I (plastidic)
scaffold16012_84.2
AT2G36530
PWY-1042
glycolysis IV (plant
cytosol)
scaffold16012_84.2
AT2G36530
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold16012_84.2
AT2G36530
PWY-5454
superpathway of sucrose
degradation to pyruvate
scaffold16012_84.2
AT2G36530
PWY-5455
superpathway of starch
degradation to pyruvate
scaffold16012_84.2
AT2G36530
PWY-5464-PLANT
superpathway of cytosolic
glycolysis (plants), pyruvate
dehydrogenase and TCA
cycle
scaffold16012_84.2
AT2G36530
PWY-5723
Rubisco shunt
scaffold16012_84.2
AT2G36530
PWYQT-4428
gluconeogenesis
scaffold16168_57.9
AT2G27820
COMPLETE-AROARA-PWY
superpathway of
phenylalanine, tyrosine and
tryptophan biosynthesis
scaffold16168_57.9
AT2G27820
PWY-3462
phenylalanine biosynthesis
II
scaffold16168_57.9
AT2G27820
PWY-3481
superpathway of
phenylalanine and tyrosine
biosynthesis
scaffold16228_55.2
AT4G22010
PWY-2261
ascorbate glutathione cycle
scaffold16296_125.4
AT3G52880
PWY-2261
ascorbate glutathione cycle
scaffold16367_136.4
AT3G48610
LIPASYN-PWY
phospholipases
scaffold16591_86.7
AT5G35170
DENOVOPURINE3- purine nucleotide
PWY
metabolism
(phosphotransfer and
nucleotide modification)
scaffold16640_160.6
AT5G48300
PWY-622
starch biosynthesis
scaffold16640_160.6
AT5G48300
PWYQT-4466
superpathway of sucrose
and starch metabolism I
(non-photosynthetic tissue)
scaffold1687_62.0
AT4G33150
LYSINE-DEG2-PWY lysine degradation II
scaffold16928_145.0
AT3G46970
PWY-5455
superpathway of starch
degradation to pyruvate
scaffold16928_145.0
AT3G46970
PWY-842
starch degradation
scaffold16928_145.0
AT3G46970
PWYQT-4467
superpathway of sucrose
and starch metabolism II
(photosynthetic tissue)
scaffold16975_40.6
AT5G14760
PYRIDNUCSYNPWY
NAD biosynthesis I (from
aspartate)
scaffold17158_45.8
AT4G17090
PWY-5455
superpathway of starch
degradation to pyruvate
scaffold17158_45.8
AT4G17090
PWY-842
starch degradation
scaffold17158_45.8
AT4G17090
PWYQT-4467
superpathway of sucrose
and starch metabolism II
(photosynthetic tissue)
scaffold17352_73.9
AT1G17745
SERSYN-PWY
serine biosynthesis
scaffold17533_238.0
AT1G10670
PWY-5172
acetyl-CoA biosynthesis
(from citrate)
scaffold17533_238.0
AT1G10670
PWY-5173
superpathway of acetylCoA biosynthesis
scaffold17575_67.2
AT5G22630
COMPLETE-AROARA-PWY
superpathway of
phenylalanine, tyrosine and
tryptophan biosynthesis
scaffold17575_67.2
AT5G22630
PWY-3462
phenylalanine biosynthesis
II
scaffold17575_67.2
AT5G22630
PWY-3481
superpathway of
phenylalanine and tyrosine
biosynthesis
scaffold17624_68.0
ATMG00510
PWY-3781
aerobic respiration -electron donor II
scaffold17624_68.0
ATMG00510
PWY-4302
aerobic respiration -electron donor III
scaffold17624_68.0
ATMG00510
PWY-5083
NAD/NADH
phosphorylation and
dephosphorylation
scaffold17646_109.1
AT1G31070
UDPNACETYLGAL UDP-<i>N</i>-acetyl-DSYN-PWY
glucosamine biosynthesis II
scaffold17707_127.5
AT3G55940
LIPASYN-PWY
phospholipases
scaffold1775_171.3
AT2G22240
PWY-2301
<i>myo</i>-inositol
biosynthesis
scaffold1775_171.3
AT2G22240
PWY-4661
1D-<i>myo</i>-inositol
hexakisphosphate
biosynthesis III
(<i>Spirodela
polyrrhiza</i>)
scaffold17979_59.5
AT5G14850
MANNOSYLdolichylCHITO-DOLICHOL- diphosphooligosaccharide
BIOSYNTHESIS
biosynthesis
scaffold18001_60.9
ATCG00340
PHOTOALL-PWY
oxygenic photosynthesis
scaffold18001_60.9
ATCG00340
PWY-101
photosynthesis light
reactions
scaffold18111_242.4
AT5G20280
PWYQT-4467
superpathway of sucrose
and starch metabolism II
(photosynthetic tissue)
scaffold18111_242.4
AT5G20280
SUCSYN-PWY
sucrose biosynthesis
scaffold18126_161.7
AT2G04842
TRNA-CHARGING- tRNA charging pathway
PWY
scaffold18424_73.6
AT5G16910
PWY-1001
cellulose biosynthesis
scaffold18704_108.3
AT4G00550
PWY-401
glycolipid biosynthesis
scaffold19013_58.6
AT5G16910
PWY-1001
cellulose biosynthesis
scaffold19072_127.6
AT4G24010
PWY-1001
cellulose biosynthesis
scaffold19168_139.7
AT2G40116
LIPASYN-PWY
phospholipases
scaffold19219_80.5
ATCG00350
PHOTOALL-PWY
oxygenic photosynthesis
scaffold19219_80.5
ATCG00350
PWY-101
photosynthesis light
reactions
scaffold19245_75.2
AT5G36880
PWY66-162
oxidative ethanol
degradation III
scaffold19245_75.2
AT5G36880
PWY66-21
oxidative ethanol
degradation I
scaffold1925_43.9
ATCG00580
PHOTOALL-PWY
oxygenic photosynthesis
scaffold1925_43.9
ATCG00580
PWY-101
photosynthesis light
reactions
scaffold19255_192.7
AT2G01290
CALVIN-PWY
Calvin-Benson-Bassham
cycle
scaffold19255_192.7
AT2G01290
NONOXIPENT-PWY pentose phosphate pathway
(non-oxidative branch)
scaffold19255_192.7
AT2G01290
PENTOSE-P-PWY
pentose phosphate pathway
scaffold19255_192.7
AT2G01290
PHOTOALL-PWY
oxygenic photosynthesis
scaffold19255_192.7
AT2G01290
PWY-5723
Rubisco shunt
scaffold19255_192.7
AT2G01290
RIBOKIN2-PWY
ribose degradation
scaffold19363_87.9
AT2G01140
CALVIN-PWY
Calvin-Benson-Bassham
cycle
scaffold19363_87.9
AT2G01140
GLYCOLYSIS
glycolysis I (plastidic)
scaffold19363_87.9
AT2G01140
PHOTOALL-PWY
oxygenic photosynthesis
scaffold19363_87.9
AT2G01140
PWY-5455
superpathway of starch
degradation to pyruvate
scaffold19363_87.9
AT2G01140
PWYQT-4428
gluconeogenesis
scaffold19393_188.5
AT2G46480
PWY-1061
homogalacturonan
biosynthesis
scaffold19471_85.8
AT5G01330
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold19471_85.8
AT5G01330
PWY-5486
pyruvate fermentation to
ethanol II
scaffold19471_85.8
AT5G01330
PWY-6333
acetaldehyde biosynthesis I
scaffold19525_177.6
AT1G15080
TRIGLSYN-PWY
triacylglycerol biosynthesis
scaffold1954_160.8
AT5G22510
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold1954_160.8
AT5G22510
PWY-5454
superpathway of sucrose
degradation to pyruvate
scaffold1954_160.8
AT5G22510
PWY-621
sucrose degradation III
scaffold1954_160.8
AT5G22510
PWYQT-4466
superpathway of sucrose
and starch metabolism I
(non-photosynthetic tissue)
scaffold19547_44.6
AT5G13280
HOMOSERSYNPWY
homoserine biosynthesis
scaffold19547_44.6
AT5G13280
PWY-3001
isoleucine biosynthesis I
scaffold19547_44.6
AT5G13280
PWY-5097
lysine biosynthesis VI
scaffold19547_44.6
AT5G13280
PWY-724
superpathway of lysine,
threonine and methionine
biosynthesis II
scaffold19547_44.6
AT5G13280
THRESYN-PWY
threonine biosynthesis
scaffold19860_66.8
AT3G02870
PWY-2301
<i>myo</i>-inositol
biosynthesis
scaffold19860_66.8
AT3G02870
PWY-4702
phytate degradation I
scaffold19860_66.8
AT3G02870
PWY-882
ascorbate biosynthesis I (Lgalactose pathway)
scaffold19882_68.9
AT4G29720
PWY-3981-ARA
&beta;-alanine biosynthesis
I
scaffold19882_68.9
AT4G29720
PWY-6441
spermine and spermidine
degradation III
scaffold20081_75.5
AT1G79460
PWY-5032
<i>ent</i>-kaurene
biosynthesis
scaffold20081_75.5
AT1G79460
PWY-5053
superpathway of
GA<sub>12</sub>
biosynthesis
scaffold2056_171.5
AT5G04900
PWY-5068
chlorophyll cycle
scaffold20729_122.8
AT4G35790
LIPASYN-PWY
phospholipases
scaffold20729_122.8
AT4G35790
PWY-3561
choline biosynthesis III
scaffold20729_122.8
AT4G35790
PWY-4762
superpathway of choline
biosynthesis
scaffold20750_232.2
AT5G66120
ARO-PWY-ARA
chorismate biosynthesis
scaffold20750_232.2
AT5G66120
COMPLETE-AROARA-PWY
superpathway of
phenylalanine, tyrosine and
tryptophan biosynthesis
scaffold2083_106.2
AT4G00400
PHOSLIPSYN2-PWY phospholipid biosynthesis II
scaffold2083_106.2
AT4G00400
PWY0-1319
CDP-diacylglycerol
biosynthesis II
scaffold2083_106.2
AT4G00400
PWY4FS-7
phosphatidylglycerol
biosynthesis I (plastid)
scaffold2083_106.2
AT4G00400
PWY4FS-8
phosphatidylglycerol
biosynthesis II
scaffold2083_106.2
AT4G00400
PWY-5667
CDP-diacylglycerol
biosynthesis I
scaffold2083_106.2
AT4G00400
TRIGLSYN-PWY
triacylglycerol biosynthesis
scaffold21055_95.5
AT1G67560
PWY-5410
13-LOX and 13-HPL
pathway
scaffold21055_95.5
AT1G67560
PWY-735
jasmonic acid biosynthesis
scaffold21110_192.6
AT2G42010
LIPASYN-PWY
phospholipases
scaffold21110_192.6
AT2G42010
PWY-3561
choline biosynthesis III
scaffold21110_192.6
AT2G42010
PWY-4762
superpathway of choline
biosynthesis
scaffold21437_148.9
AT5G18660
CHLOROPHYLLSYN
chlorophyllide <i>a</i>
biosynthesis I
scaffold21447_71.2
AT3G10390
PWY-3981-ARA
&beta;-alanine biosynthesis
I
scaffold21447_71.2
AT3G10390
PWY-6441
spermine and spermidine
degradation III
scaffold21635_175.2
AT5G23310
DETOX1-PWY
superoxide radicals
degradation
scaffold21714_183.5
AT2G17420
THIOREDOX-PWY
thioredoxin pathway
scaffold2202_56.8
AT2G21170
CALVIN-PWY
Calvin-Benson-Bassham
cycle
scaffold2202_56.8
AT2G21170
GLYCOLYSIS
glycolysis I (plastidic)
scaffold2202_56.8
AT2G21170
PHOTOALL-PWY
oxygenic photosynthesis
scaffold2202_56.8
AT2G21170
PWY-1042
glycolysis IV (plant
cytosol)
scaffold2202_56.8
AT2G21170
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold2202_56.8
AT2G21170
PWY-5454
superpathway of sucrose
degradation to pyruvate
scaffold2202_56.8
AT2G21170
PWY-5455
superpathway of starch
degradation to pyruvate
scaffold2202_56.8
AT2G21170
PWY-5464-PLANT
superpathway of cytosolic
glycolysis (plants), pyruvate
dehydrogenase and TCA
cycle
scaffold22340_121.2
AT1G62800
ASPARTATESYNPWY
aspartate biosynthesis
scaffold22340_121.2
AT1G62800
ASPASN-ARA-PWY superpathway of aspartate
and asparagine biosynthesis
scaffold22340_121.2
AT1G62800
PWY-3001
isoleucine biosynthesis I
scaffold22340_121.2
AT1G62800
THRESYN-PWY
threonine biosynthesis
scaffold22409_108.3
AT5G03630
PWY-2261
ascorbate glutathione cycle
scaffold23138_106.9
AT2G01290
CALVIN-PWY
Calvin-Benson-Bassham
cycle
scaffold23138_106.9
AT2G01290
NONOXIPENT-PWY pentose phosphate pathway
(non-oxidative branch)
scaffold23138_106.9
AT2G01290
PENTOSE-P-PWY
pentose phosphate pathway
scaffold23138_106.9
AT2G01290
PHOTOALL-PWY
oxygenic photosynthesis
scaffold23138_106.9
AT2G01290
PWY-5723
Rubisco shunt
scaffold23138_106.9
AT2G01290
RIBOKIN2-PWY
ribose degradation
scaffold2315_140.2
AT4G17090
PWY-5455
superpathway of starch
degradation to pyruvate
scaffold2315_140.2
AT4G17090
PWY-842
starch degradation
scaffold2315_140.2
AT4G17090
PWYQT-4467
superpathway of sucrose
and starch metabolism II
(photosynthetic tissue)
scaffold23299_123.6
AT1G06570
PWY-1422
vitamin E biosynthesis
scaffold23299_123.6
AT1G06570
PWY-1581
plastoquinone-<i>9</i>
biosynthesis
scaffold23299_123.6
AT1G06570
PWY-5864
superpathway of
plastoquinone biosynthesis
scaffold23299_123.6
AT1G06570
TYRFUMCAT-PWY
tyrosine degradation I
scaffold23365_74.4
ATCG00350
PHOTOALL-PWY
oxygenic photosynthesis
scaffold23365_74.4
ATCG00350
PWY-101
photosynthesis light
reactions
scaffold23438_119.1
AT1G51440
LIPAS-PWY
triacylglycerol degradation
scaffold23438_119.1
AT1G51440
LIPASYN-PWY
phospholipases
scaffold23455_134.8
AT4G22100
PWY-5691
urate degradation to
allantoin
scaffold23455_134.8
AT4G22100
URSIN-PWY
ureide biosynthesis
scaffold23714_193.7
AT1G12240
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold23714_193.7
AT1G12240
PWY-5454
superpathway of sucrose
degradation to pyruvate
scaffold23714_193.7
AT1G12240
PWY-621
sucrose degradation III
scaffold23714_193.7
AT1G12240
PWYQT-4466
superpathway of sucrose
and starch metabolism I
(non-photosynthetic tissue)
scaffold23786_112.4
AT5G51460
TRESYN-PWY
trehalose biosynthesis I
scaffold23797_93.5
AT2G43020
PWY-3981-ARA
&beta;-alanine biosynthesis
I
scaffold23797_93.5
AT2G43020
PWY-6441
spermine and spermidine
degradation III
scaffold23936_201.0
AT3G62410
PWYQT-4428
gluconeogenesis
scaffold23960_225.5
AT5G56760
CYSTSYN-PWY
cysteine biosynthesis I
scaffold24008_100.0
AT5G51820
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold24008_100.0
AT5G51820
PWY-5454
superpathway of sucrose
degradation to pyruvate
scaffold24008_100.0
AT5G51820
PWY-5455
superpathway of starch
degradation to pyruvate
scaffold24008_100.0
AT5G51820
PWY-5661
GDP-glucose biosynthesis
scaffold24008_100.0
AT5G51820
PWY-621
sucrose degradation III
scaffold24008_100.0
AT5G51820
PWY-622
starch biosynthesis
scaffold24008_100.0
AT5G51820
PWY-842
starch degradation
scaffold24008_100.0
AT5G51820
PWYQT-4437
UDP-glucose biosynthesis
(from glucose 6-phosphate)
scaffold24008_100.0
AT5G51820
PWYQT-4466
superpathway of sucrose
and starch metabolism I
(non-photosynthetic tissue)
scaffold24008_100.0
AT5G51820
PWYQT-4467
superpathway of sucrose
and starch metabolism II
(photosynthetic tissue)
scaffold24008_100.0
AT5G51820
SUCSYN-PWY
sucrose biosynthesis
scaffold24246_96.2
AT4G11050
PWY-1001
cellulose biosynthesis
scaffold24251_47.6
AT1G59900
PWY-5173
superpathway of acetylCoA biosynthesis
scaffold24251_47.6
AT1G59900
PWY-5464-PLANT
superpathway of cytosolic
glycolysis (plants), pyruvate
dehydrogenase and TCA
cycle
scaffold24251_47.6
AT1G59900
PYRUVDEHYD-
acetyl-CoA biosynthesis
PWY
(from pyruvate)
scaffold24273_192.4
AT4G16760
PWY-5136
fatty acid &beta;-oxidation
II (core pathway)
scaffold24273_192.4
AT4G16760
PWY-561
superpathway of glyoxylate
cycle
scaffold24273_192.4
AT4G16760
PWY-735
jasmonic acid biosynthesis
scaffold2429_119.0
AT4G21470
RIBOSYN2-PWY
flavin biosynthesis I
(bacteria and plants)
scaffold24336_127.2
AT1G55020
PWY-5410
13-LOX and 13-HPL
pathway
scaffold24336_127.2
AT1G55020
PWY-735
jasmonic acid biosynthesis
scaffold24700_57.3
AT2G26640
PWY-5080
very long chain fatty acid
biosynthesis
scaffold247_55.9
AT3G19480
SERSYN-PWY
serine biosynthesis
scaffold24850_161.8
AT4G22010
PWY-2261
ascorbate glutathione cycle
scaffold24858_121.9
AT1G30100
PWY-695
abscisic acid biosynthesis
scaffold24877_46.8
AT1G17420
PWY-5410
13-LOX and 13-HPL
pathway
scaffold24877_46.8
AT1G17420
PWY-735
jasmonic acid biosynthesis
scaffold25143_174.3
AT5G08380
PWY-5337
stachyose biosynthesis
scaffold25143_174.3
AT5G08380
PWY-5338
galactosylcyclitol
biosynthesis
scaffold25143_174.3
AT5G08380
PWY-5342
ajugose biosynthesis I
(galactinol-dependent)
scaffold25143_174.3
AT5G08380
PWY-5343
ajugose biosynthesis II
(galactinol-independent)
scaffold25425_161.9
AT5G17920
PWY-5041
<i>S</i>-adenosyl-Lmethionine cycle II
scaffold25425_161.9
AT5G17920
PWY-702
methionine biosynthesis II
scaffold25425_161.9
AT5G17920
PWY-724
superpathway of lysine,
threonine and methionine
biosynthesis II
scaffold25440_84.8
AT2G25870
PWY4FS-11
ascorbate biosynthesis II
(L-gulose pathway)
scaffold25440_84.8
AT2G25870
TRESYN-PWY
trehalose biosynthesis I
scaffold25505_64.0
AT2G25080
PWY-4081
glutathione redox reactions
I
scaffold25547_145.8
AT3G15640
PWY-3781
aerobic respiration -electron donor II
scaffold25581_38.6
AT3G62740
PWY-5691
urate degradation to
allantoin
scaffold25581_38.6
AT3G62740
URSIN-PWY
ureide biosynthesis
scaffold25585_84.0
AT2G05990
FASYN-ELONGPWY
fatty acid elongation -saturated
scaffold25704_225.7
AT5G09650
PWYQT-4437
UDP-glucose biosynthesis
(from glucose 6-phosphate)
scaffold25752_97.5
AT2G41530
PWY-1801
formaldehyde oxidation II
(glutathione-dependent)
scaffold25776_164.3
AT1G68560
PWY-5455
superpathway of starch
degradation to pyruvate
scaffold25776_164.3
AT1G68560
PWY-842
starch degradation
scaffold25776_164.3
AT1G68560
PWYQT-4467
superpathway of sucrose
and starch metabolism II
(photosynthetic tissue)
scaffold25945_193.1
AT1G51680
PWY-1121
suberin biosynthesis
scaffold25945_193.1
AT1G51680
PWY1F-FLAVSYN
flavonoid biosynthesis
scaffold25945_193.1
AT1G51680
PWY-361
phenylpropanoid
biosynthesis
scaffold25945_193.1
AT1G51680
PWY4FS-9
scopoletin biosynthesis
scaffold25945_193.1
AT1G51680
PWY-5868
simple coumarins
biosynthesis
scaffold25966_75.7
AT5G57590
PWY-3701
biotin biosynthesis II
scaffold26319_214.7
AT5G18170
GLUTAMATEDEG1-PWY
glutamate degradation I
scaffold26322_84.3
ATCG00490
CALVIN-PWY
Calvin-Benson-Bassham
cycle
scaffold26322_84.3
ATCG00490
NONMEVIPP-PWY
methylerythritol phosphate
pathway
scaffold26322_84.3
ATCG00490
PHOTOALL-PWY
oxygenic photosynthesis
scaffold26322_84.3
ATCG00490
PWY-181
photorespiration
scaffold26322_84.3
ATCG00490
PWY-5121
superpathway of
geranylgeranyldiphosphate
biosynthesis II (via MEP)
scaffold26322_84.3
ATCG00490
PWY-5723
Rubisco shunt
scaffold26338_120.3
AT5G07440
GLUTAMATEDEG1-PWY
glutamate degradation I
scaffold26649_233.8
AT1G03630
CHLOROPHYLLSYN
chlorophyllide <i>a</i>
biosynthesis I
scaffold26696_99.4
AT5G54960
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold26696_99.4
AT5G54960
PWY-5486
pyruvate fermentation to
ethanol II
scaffold26696_99.4
AT5G54960
PWY-6333
acetaldehyde biosynthesis I
scaffold26737_180.6
AT5G48230
ILEUDEG-PWY
isoleucine degradation I
scaffold26737_180.6
AT5G48230
LYSINE-DEG2-PWY lysine degradation II
scaffold26737_180.6
AT5G48230
PWY-5910
superpathway of
geranylgeranyldiphosphate
biosynthesis I (via
mevalonate)
scaffold26737_180.6
AT5G48230
PWY-922
mevalonate pathway I
scaffold26752_38.1
AT4G39970
RIBOSYN2-PWY
flavin biosynthesis I
(bacteria and plants)
scaffold26777_119.9
AT4G22010
PWY-2261
ascorbate glutathione cycle
scaffold26778_115.3
AT3G53520
PWY-4821
UDP-D-xylose biosynthesis
scaffold26778_115.3
AT3G53520
PWY-5114
UDP-sugars interconversion
scaffold26827_138.8
AT2G24270
PWY-1042
glycolysis IV (plant
cytosol)
scaffold26827_138.8
AT2G24270
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold26827_138.8
AT2G24270
PWY-5454
superpathway of sucrose
degradation to pyruvate
scaffold26827_138.8
AT2G24270
PWY-5464-PLANT
superpathway of cytosolic
glycolysis (plants), pyruvate
dehydrogenase and TCA
cycle
scaffold26842_103.6
AT2G26260
PWY66-341
cholesterol biosynthesis I
scaffold26842_103.6
AT2G26260
PWY-6663
plant sterol biosynthesis II
scaffold26960_26.4
AT1G06290
PWY-5136
fatty acid &beta;-oxidation
II (core pathway)
scaffold26960_26.4
AT1G06290
PWY-561
superpathway of glyoxylate
cycle
scaffold26966_120.8
AT1G67080
PWY-695
abscisic acid biosynthesis
scaffold27058_167.6
AT4G23850
PHOSLIPSYN2-PWY phospholipid biosynthesis II
scaffold27058_167.6
AT4G23850
PWY-5143
fatty acid activation
scaffold27058_167.6
AT4G23850
PWY-5995
linoleate biosynthesis I
(plants)
scaffold27190_32.8
AT4G29210
PWY-4041
&gamma;-glutamyl cycle
scaffold27190_32.8
AT4G29210
PWYQT-4432
glutathione degradation
scaffold27193_181.0
AT5G52920
GLYCOLYSIS
glycolysis I (plastidic)
scaffold27193_181.0
AT5G52920
PWY-1042
glycolysis IV (plant
cytosol)
scaffold27193_181.0
AT5G52920
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold27193_181.0
AT5G52920
PWY-5454
superpathway of sucrose
degradation to pyruvate
scaffold27193_181.0
AT5G52920
PWY-5455
superpathway of starch
degradation to pyruvate
scaffold27193_181.0
AT5G52920
PWY-5464-PLANT
superpathway of cytosolic
glycolysis (plants), pyruvate
dehydrogenase and TCA
cycle
scaffold27193_181.0
AT5G52920
PWY-5723
Rubisco shunt
scaffold27217_99.4
AT1G56500
RIBOSYN2-PWY
flavin biosynthesis I
(bacteria and plants)
scaffold27221_78.2
AT1G79500
KDO-NAGLIPASYN- superpathway of
PWY
KDO<SUB>2</SUB>-lipid
A biosynthesis
scaffold27221_78.2
AT1G79500
PWY-1269
CMP-KDO biosynthesis I
scaffold27221_78.2
AT1G79500
PWY-5111
CMP-KDO biosynthesis II
(from D-arabinose 5phosphate)
scaffold2723_37.5
AT4G35000
PWY-2261
ascorbate glutathione cycle
scaffold27355_96.7
AT4G17260
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold27355_96.7
AT4G17260
PWY-5481
pyruvate fermentation to
lactate
scaffold27369_103.4
AT4G16800
ILEUDEG-PWY
isoleucine degradation I
scaffold27369_103.4
AT4G16800
LYSINE-DEG2-PWY lysine degradation II
scaffold27369_103.4
AT4G16800
PWY-3941
&beta;-alanine biosynthesis
II
scaffold27369_103.4
AT4G16800
PWY-5080
very long chain fatty acid
biosynthesis
scaffold27369_103.4
AT4G16800
PWY-5136
fatty acid &beta;-oxidation
II (core pathway)
scaffold27369_103.4
AT4G16800
PWY-5138
fatty acid &beta;-oxidation
IV (unsaturated, even
number)
scaffold27369_103.4
AT4G16800
PWY-561
superpathway of glyoxylate
cycle
scaffold27369_103.4
AT4G16800
VALDEG-PWY
valine degradation I
scaffold27403_109.4
AT2G36390
PWY-622
starch biosynthesis
scaffold27403_109.4
AT2G36390
PWYQT-4466
superpathway of sucrose
and starch metabolism I
(non-photosynthetic tissue)
scaffold27443_181.2
AT5G26710
PWY-5188
tetrapyrrole biosynthesis I
scaffold27443_181.2
AT5G26710
PWY-5918
heme biosynthesis I
scaffold27443_181.2
AT5G26710
PWYQT-62
superpathway of proto- and
siroheme biosynthesis
scaffold27443_181.2
AT5G26710
TRNA-CHARGING- tRNA charging pathway
PWY
scaffold2871_101.6
AT5G22510
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold2871_101.6
AT5G22510
PWY-5454
superpathway of sucrose
degradation to pyruvate
scaffold2871_101.6
AT5G22510
PWY-621
sucrose degradation III
scaffold2871_101.6
AT5G22510
PWYQT-4466
superpathway of sucrose
and starch metabolism I
(non-photosynthetic tissue)
scaffold2936_112.5
AT2G21790
DENOVOPURINE3- purine nucleotide
PWY
metabolism
(phosphotransfer and
nucleotide modification)
scaffold2936_112.5
AT2G21790
PWY0-166
pyrimidine
deoxyribonucleotides <i>de
novo</i> biosynthesis
scaffold3716_121.6
AT3G23810
PWY-5041
<i>S</i>-adenosyl-Lmethionine cycle II
scaffold4389_134.6
AT4G17190
PWY2OL-4
linalool biosynthesis
scaffold4389_134.6
AT4G17190
PWY-5121
superpathway of
geranylgeranyldiphosphate
biosynthesis II (via MEP)
scaffold4389_134.6
AT4G17190
PWY-5122
geranyldiphosphate
biosynthesis
scaffold4389_134.6
AT4G17190
PWY-5123
<i>trans,trans</i>-farnesyl
diphosphate biosynthesis
scaffold4389_134.6
AT4G17190
PWY-5910
superpathway of
geranylgeranyldiphosphate
biosynthesis I (via
mevalonate)
scaffold4389_134.6
AT4G17190
PWYQT-4449
polyisoprenoid biosynthesis
scaffold4390_159.1
AT4G17190
PWY2OL-4
linalool biosynthesis
scaffold4390_159.1
AT4G17190
PWY-5121
superpathway of
geranylgeranyldiphosphate
biosynthesis II (via MEP)
scaffold4390_159.1
AT4G17190
PWY-5122
geranyldiphosphate
biosynthesis
scaffold4390_159.1
AT4G17190
PWY-5123
<i>trans,trans</i>-farnesyl
diphosphate biosynthesis
scaffold4390_159.1
AT4G17190
PWY-5910
superpathway of
geranylgeranyldiphosphate
biosynthesis I (via
mevalonate)
scaffold4390_159.1
AT4G17190
PWYQT-4449
polyisoprenoid biosynthesis
scaffold4542_103.6
AT5G44030
PWY-1001
cellulose biosynthesis
scaffold4546_119.6
AT4G04350
TRNA-CHARGING- tRNA charging pathway
PWY
scaffold512_61.3
AT2G43820
PWY-6624
salicylate glucosides
biosynthesis III
scaffold512_61.3
AT2G43820
PWY-6762
salicylate glucosides
biosynthesis IV
scaffold5476_128.0
AT4G34860
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold5476_128.0
AT4G34860
PWY-5454
superpathway of sucrose
degradation to pyruvate
scaffold5476_128.0
AT4G34860
PWY-621
sucrose degradation III
scaffold5476_128.0
AT4G34860
PWYQT-4466
superpathway of sucrose
and starch metabolism I
(non-photosynthetic tissue)
scaffold5597_80.2
AT3G46940
PWY0-166
pyrimidine
deoxyribonucleotides <i>de
novo</i> biosynthesis
scaffold5693_66.0
AT1G48930
PWY-1001
cellulose biosynthesis
scaffold5808_72.1
AT3G18850
PHOSLIPSYN2-PWY phospholipid biosynthesis II
scaffold5808_72.1
AT3G18850
PWY0-1319
CDP-diacylglycerol
biosynthesis II
scaffold5808_72.1
AT3G18850
PWY4FS-7
phosphatidylglycerol
biosynthesis I (plastid)
scaffold5808_72.1
AT3G18850
PWY4FS-8
phosphatidylglycerol
biosynthesis II
scaffold5808_72.1
AT3G18850
PWY-5667
CDP-diacylglycerol
biosynthesis I
scaffold5808_72.1
AT3G18850
TRIGLSYN-PWY
triacylglycerol biosynthesis
scaffold5811_103.1
AT4G33010
GLYCLEAV-PWY
glycine cleavage complex
scaffold5976_141.8
AT2G38040
PWY-4381
fatty acid biosynthesis
initiation I
scaffold5976_141.8
AT2G38040
PWY-5156
superpathway of fatty acid
biosynthesis II (plant)
scaffold6134_158.2
AT4G16130
PWY-5114
UDP-sugars interconversion
scaffold6134_158.2
AT4G16130
PWY-82
UDP-L-arabinose
biosynthesis II (from Larabinose)
scaffold6148_118.1
AT4G39800
PWY-2301
<i>myo</i>-inositol
biosynthesis
scaffold6148_118.1
AT4G39800
PWY-4661
1D-<i>myo</i>-inositol
hexakisphosphate
biosynthesis III
(<i>Spirodela
polyrrhiza</i>)
scaffold6162_45.4
ATCG00340
PHOTOALL-PWY
oxygenic photosynthesis
scaffold6162_45.4
ATCG00340
PWY-101
photosynthesis light
reactions
scaffold6308_167.7
AT2G22240
PWY-2301
<i>myo</i>-inositol
biosynthesis
scaffold6308_167.7
AT2G22240
PWY-4661
1D-<i>myo</i>-inositol
hexakisphosphate
biosynthesis III
(<i>Spirodela
polyrrhiza</i>)
scaffold6576_112.1
AT3G14940
PWY-6549
glutamine biosynthesis III
scaffold6576_112.1
AT3G14940
PWYQT-4429
CO<sub>2</sub> fixation
into oxaloacetate
scaffold671_118.6
AT4G32180
COA-PWY
coenzyme A biosynthesis
scaffold671_118.6
AT4G32180
PWY-4221ARA
superpathway of
pantothenate and
coenzymeA biosynthesis
scaffold675_191.2
AT1G12000
PWY-1042
glycolysis IV (plant
cytosol)
scaffold675_191.2
AT1G12000
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold675_191.2
AT1G12000
PWY-5454
superpathway of sucrose
degradation to pyruvate
scaffold675_191.2
AT1G12000
PWY-5464-PLANT
superpathway of cytosolic
glycolysis (plants), pyruvate
dehydrogenase and TCA
cycle
scaffold7274_220.2
AT1G62180
SULFMETII-PWY
sulfate reduction II
(assimilatory)
scaffold7384_63.3
AT3G53260
PWY-1121
suberin biosynthesis
scaffold7384_63.3
AT3G53260
PWY1F-467
phenylpropanoid
biosynthesis, initial
reactions
scaffold7384_63.3
AT3G53260
PWY-6444
benzoate biosynthesis II
(CoA-independent, non&beta;-oxidative)
scaffold7384_63.3
AT3G53260
PWY-6457
<i>trans</i>-cinnamoylCoA biosynthesis
scaffold7538_160.3
AT3G13490
TRNA-CHARGING- tRNA charging pathway
PWY
scaffold7655_50.0
AT3G10700
PWY-4
UDP-D-galacturonate
biosynthesis II (from Dgalacturonate)
scaffold7655_50.0
AT3G10700
PWY-5114
UDP-sugars interconversion
scaffold7841_34.6
AT5G08380
PWY-5337
stachyose biosynthesis
scaffold7841_34.6
AT5G08380
PWY-5338
galactosylcyclitol
biosynthesis
scaffold7841_34.6
AT5G08380
PWY-5342
ajugose biosynthesis I
(galactinol-dependent)
scaffold7841_34.6
AT5G08380
PWY-5343
ajugose biosynthesis II
(galactinol-independent)
scaffold8042_121.4
AT3G06350
ARO-PWY-ARA
chorismate biosynthesis
scaffold8042_121.4
AT3G06350
COMPLETE-AROARA-PWY
superpathway of
phenylalanine, tyrosine and
tryptophan biosynthesis
scaffold8050_122.8
AT5G15140
PWY-5114
UDP-sugars interconversion
scaffold8050_122.8
AT5G15140
PWY-6317
galactose degradation I
(Leloir pathway)
scaffold8223_114.2
AT5G38970
PWY-6544
superpathway of C28
brassinosteroid biosynthesis
scaffold8223_114.2
AT5G38970
PWY-699
brassinosteroid biosynthesis
I
scaffold838_116.3
AT3G08590
GLYCOLYSIS
glycolysis I (plastidic)
scaffold838_116.3
AT3G08590
PWY-1042
glycolysis IV (plant
cytosol)
scaffold838_116.3
AT3G08590
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold838_116.3
AT3G08590
PWY-5454
superpathway of sucrose
degradation to pyruvate
scaffold838_116.3
AT3G08590
PWY-5455
superpathway of starch
degradation to pyruvate
scaffold838_116.3
AT3G08590
PWY-5464-PLANT
superpathway of cytosolic
glycolysis (plants), pyruvate
dehydrogenase and TCA
cycle
scaffold838_116.3
AT3G08590
PWY-5723
Rubisco shunt
scaffold838_116.3
AT3G08590
PWYQT-4428
gluconeogenesis
scaffold8594_60.1
AT3G25780
PWY-735
jasmonic acid biosynthesis
scaffold8999_166.8
AT3G17940
PWY-5114
UDP-sugars interconversion
scaffold8999_166.8
AT3G17940
PWY-6317
galactose degradation I
(Leloir pathway)
scaffold925_105.2
AT1G29900
ARGSYNBSUBPWY
arginine biosynthesis II
(acetyl cycle)
scaffold925_105.2
AT1G29900
ARGSYN-PWY
arginine biosynthesis I
scaffold925_105.2
AT1G29900
PWY-4984
urea cycle
scaffold925_105.2
AT1G29900
PWY-5004
superpathway of citrulline
metabolism
scaffold925_105.2
AT1G29900
PWY-5686
uridine-5'-phosphate
biosynthesis
scaffold973_36.2
AT3G08510
LIPASYN-PWY
phospholipases
scaffold9811_93.9
AT5G01220
PWYQT-4427
sulfolipid biosynthesis
scaffold995_89.7
AT5G13640
TRIGLSYN-PWY
triacylglycerol biosynthesis
scaffold10936_47.1
AT4G34050
PWY-1121
suberin biosynthesis
scaffold10936_47.1
AT4G34050
PWY-361
phenylpropanoid
biosynthesis
scaffold10936_47.1
AT4G34050
PWY4FS-9
scopoletin biosynthesis
scaffold11254_71.5
AT1G55740
PWY-5337
stachyose biosynthesis
scaffold11280_94.0
AT1G12050
TYRFUMCAT-PWY
tyrosine degradation I
scaffold11281_134.3
AT2G40890
PWY-1121
suberin biosynthesis
scaffold11281_134.3
AT2G40890
PWY-2181
free phenylpropanoid acid
biosynthesis
scaffold11281_134.3
AT2G40890
PWY-361
phenylpropanoid
biosynthesis
scaffold11281_134.3
AT2G40890
PWY-5868
simple coumarins
biosynthesis
scaffold11301_97.2
AT5G35170
DENOVOPURINE3- purine nucleotide
PWY
metabolism
(phosphotransfer and
nucleotide modification)
scaffold12732_66.8
AT3G10370
PWY-4261
glycerol degradation IV
scaffold12732_66.8
AT3G10370
PWY-6118
glycerol-3-phosphate
shuttle
scaffold13117_36.7
ATMG00730
PWY-3781
aerobic respiration -electron donor II
scaffold13945_201.9
AT3G02875
PWY-1822
IAA biosynthesis II
scaffold14872_72.7
AT1G53500
PWY-3261
UDP-L-rhamnose
biosynthesis
scaffold14872_72.7
AT1G53500
PWY-5114
UDP-sugars interconversion
scaffold14950_73.8
AT1G73980
PWYQT-4445
pyrimidine salvage pathway
scaffold14999_37.9
AT4G39830
PWY-2261
ascorbate glutathione cycle
scaffold15304_99.4
AT4G33220
PWY-1081
homogalacturonan
degradation
scaffold15321_74.8
AT2G23170
PWY-1782
superpathway of IAA
conjugate biosynthesis
scaffold15321_74.8
AT2G23170
PWY-2021
IAA degradation IV
scaffold15321_74.8
AT2G23170
PWY-6219
indole-3-acetyl-amino acid
biosynthesis
scaffold15715_159.7
AT3G12670
PWY-5687
pyrimidine ribonucleotides
interconversion
scaffold16547_238.2
AT4G35630
SERSYN-PWY
serine biosynthesis
scaffold17176_69.3
AT4G26850
PWY4FS-12
ascorbate biosynthesis III
(VTC2 cycle)
scaffold17176_69.3
AT4G26850
PWY4FS-13
ascorbate biosynthesis IV
(extended VTC2 cycle)
scaffold17176_69.3
AT4G26850
PWY-882
ascorbate biosynthesis I (Lgalactose pathway)
scaffold17296_77.2
AT2G14750
PWY-5340
sulfate activation for
sulfonation
scaffold17335_106.7
AT5G13630
CHLOROPHYLLSYN
chlorophyllide <i>a</i>
biosynthesis I
scaffold17488_144.3
AT5G17330
PWY-4321
glutamate degradation IV
scaffold19187_103.9
AT5G03300
PWY-5043
purine nucleosides salvage
II (plant)
scaffold19187_103.9
AT5G03300
PWY-6619
adenine and adenosine
salvage VI
scaffold19964_129.1
AT3G44880
PWY-5098
chlorophyll <i>a</i>
degradation
scaffold20073_114.8
AT5G40390
PWY-5337
stachyose biosynthesis
scaffold20073_114.8
AT5G40390
PWY-5342
ajugose biosynthesis I
(galactinol-dependent)
scaffold20088_156.5
AT2G29090
PWY-5271
phaseic acid biosynthesis
scaffold20224_132.7
AT5G47840
DENOVOPURINE3- purine nucleotide
PWY
metabolism
(phosphotransfer and
nucleotide modification)
scaffold20790_95.0
AT3G55590
PWY-5659
GDP-mannose biosynthesis
scaffold20790_95.0
AT3G55590
PWY-882
ascorbate biosynthesis I (Lgalactose pathway)
scaffold20809_44.3
AT1G66520
PWY-6121
5-aminoimidazole
ribonucleotide biosynthesis
I
scaffold20809_44.3
AT1G66520
PWY-841
purine nucleotides <i>de
novo</i> biosynthesis II
scaffold20928_87.6
AT5G57590
PWY-3701
biotin biosynthesis II
scaffold21078_174.2
AT4G36530
LIPAS-PWY
triacylglycerol degradation
scaffold21206_158.4
AT3G56940
CHLOROPHYLLSYN
chlorophyllide <i>a</i>
biosynthesis I
scaffold21505_148.3
AT3G11945
PWY-1581
plastoquinone-<i>9</i>
biosynthesis
scaffold21505_148.3
AT3G11945
PWY-5864
superpathway of
plastoquinone biosynthesis
scaffold22174_129.7
AT1G44446
PWY-5068
chlorophyll cycle
scaffold22331_97.6
AT4G34050
PWY-1121
suberin biosynthesis
scaffold22331_97.6
AT4G34050
PWY-361
phenylpropanoid
biosynthesis
scaffold22331_97.6
AT4G34050
PWY4FS-9
scopoletin biosynthesis
scaffold22925_183.5
AT1G22020
GLYSYN2-PWY
glycine biosynthesis
scaffold22925_183.5
AT1G22020
PWY-181
photorespiration
scaffold22925_183.5
AT1G22020
PWY-2161
folate polyglutamylation I
scaffold23020_57.2
AT4G25080
CHLOROPHYLLSYN
chlorophyllide <i>a</i>
biosynthesis I
scaffold23066_77.2
AT1G71920
HISTSYN-PWY
histidine biosynthesis
scaffold23234_135.6
AT5G26667
PWY-5687
pyrimidine ribonucleotides
interconversion
scaffold23360_79.1
AT4G34900
PWY-5044
purine nucleotides
degradation I (plants)
scaffold23360_79.1
AT4G34900
PWY-5695
urate biosynthesis
scaffold23360_79.1
AT4G34900
PWY-6595
superpathway of guanosine
nucleotides degradation
(plants)
scaffold23360_79.1
AT4G34900
PWY-6596
adenosine nucleotides
degradation I
scaffold23360_79.1
AT4G34900
PWY-6606
pguanosine nucleotides
degradation II
scaffold23360_79.1
AT4G34900
PWY-6607
guanosine nucleotides
degradation I
scaffold23360_79.1
AT4G34900
URSIN-PWY
ureide biosynthesis
scaffold23517_127.3
AT1G53500
PWY-3261
UDP-L-rhamnose
biosynthesis
scaffold23517_127.3
AT1G53500
PWY-5114
UDP-sugars interconversion
scaffold23656_75.8
AT1G64660
PWY-701
methionine degradation II
scaffold24001_73.3
AT5G27380
GLUTATHIONESYN glutathione biosynthesis
-PWY
scaffold24001_73.3
AT5G27380
PWY-4041
&gamma;-glutamyl cycle
scaffold24001_73.3
AT5G27380
PWYQT-4470
&gamma;-glutamyl cycle
(plant pathway)
scaffold24232_131.7
AT2G20340
PWY-5474
hydroxycinnamic acid
tyramine amides
biosynthesis
scaffold24558_188.0
AT5G02080
COA-PWY
coenzyme A biosynthesis
scaffold24558_188.0
AT5G02080
PWY-4221ARA
superpathway of
pantothenate and
coenzymeA biosynthesis
scaffold24801_220.5
AT4G01970
PWY-5337
stachyose biosynthesis
scaffold24801_220.5
AT4G01970
PWY-5338
galactosylcyclitol
biosynthesis
scaffold24801_220.5
AT4G01970
PWY-5343
ajugose biosynthesis II
(galactinol-independent)
scaffold25013_125.8
AT1G22410
ARO-PWY-ARA
chorismate biosynthesis
scaffold25013_125.8
AT1G22410
COMPLETE-AROARA-PWY
superpathway of
phenylalanine, tyrosine and
tryptophan biosynthesis
scaffold25158_35.1
AT2G16500
PWY-40
putrescine biosynthesis I
scaffold25158_35.1
AT2G16500
PWY-43
putrescine biosynthesis II
scaffold25158_35.1
AT2G16500
PWY-6305
putrescine biosynthesis IV
scaffold25158_35.1
AT2G16500
PWYQT-94
superpathway of polyamine
biosynthesis
scaffold25496_111.0
AT3G53130
CAROTENOID-PWY superpathway of carotenoid
biosynthesis
scaffold25496_111.0
AT3G53130
PWY-5947
lutein biosynthesis
scaffold25534_118.6
AT5G15470
PWY-1061
homogalacturonan
biosynthesis
scaffold26632_212.9
AT5G64640
PWY-1081
homogalacturonan
degradation
scaffold26963_46.8
AT4G02320
PWY-1081
homogalacturonan
degradation
scaffold27048_108.4
AT2G40890
PWY-1121
suberin biosynthesis
scaffold27048_108.4
AT2G40890
PWY-2181
free phenylpropanoid acid
biosynthesis
scaffold27048_108.4
AT2G40890
PWY-361
phenylpropanoid
biosynthesis
scaffold27048_108.4
AT2G40890
PWY-5868
simple coumarins
biosynthesis
scaffold3352_36.3
AT1G55740
PWY-5337
stachyose biosynthesis
scaffold4289_140.7
AT5G47780
PWY-1061
homogalacturonan
biosynthesis
scaffold431_129.9
AT1G73980
PWYQT-4445
pyrimidine salvage pathway
scaffold4851_94.3
AT2G26080
GLYCLEAV-PWY
glycine cleavage complex
scaffold5192_103.5
AT3G01040
PWY-1061
homogalacturonan
biosynthesis
scaffold5209_20.2
AT5G51830
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold5209_20.2
AT5G51830
PWY-5454
superpathway of sucrose
degradation to pyruvate
scaffold5209_20.2
AT5G51830
PWY-621
sucrose degradation III
scaffold5209_20.2
AT5G51830
PWYQT-4466
superpathway of sucrose
and starch metabolism I
(non-photosynthetic tissue)
scaffold5834_104.2
AT4G37930
GLYSYN2-PWY
glycine biosynthesis
scaffold5834_104.2
AT4G37930
PWY-181
photorespiration
scaffold5834_104.2
AT4G37930
PWY-2161
folate polyglutamylation I
scaffold5834_104.2
AT4G37930
PWY-2201
folate transformations
scaffold6105_81.6
AT1G08550
CAROTENOID-PWY superpathway of carotenoid
biosynthesis
scaffold6105_81.6
AT1G08550
PWY-1141
xanthophyll cycle
scaffold6105_81.6
AT1G08550
PWY-5945
antheraxanthin and
violaxanthin biosynthesis
scaffold7532_136.6
AT3G47340
ASPARAGINEBIOSYNTHESIS
asparagine biosynthesis I
scaffold7532_136.6
AT3G47340
ASPASN-ARA-PWY superpathway of aspartate
and asparagine biosynthesis
scaffold7542_33.5
AT4G02330
PWY-1081
homogalacturonan
degradation
scaffold9204_75.3
AT3G59480
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold9204_75.3
AT3G59480
PWY-5454
superpathway of sucrose
degradation to pyruvate
scaffold9204_75.3
AT3G59480
PWY-621
sucrose degradation III
scaffold9204_75.3
AT3G59480
PWYQT-4466
superpathway of sucrose
and starch metabolism I
(non-photosynthetic tissue)
scaffold970_97.5
AT5G60340
DENOVOPURINE3- purine nucleotide
PWY
metabolism
(phosphotransfer and
nucleotide modification)
Table 1 Pathways available for varius homolog of podophyllum genes having 2 fold or greater
expression
at
15o
C.
At 25o C 8020 genes have expression 2 fold and above. Out of these 8020 genes the pathways were
available for 79 unique genes (Homologs) in PMN.
Scaffold
Homolog
PMN pathway
accession number
Pathway name
scaffold16622_55.9
ATCG00680
PHOTOALL-PWY
oxygenic
photosynthesis
scaffold16622_55.9
ATCG00680
PWY-101
photosynthesis light
reactions
scaffold2475_118.7
AT4G34570
PWY-3742
tetrahydrofolate
biosynthesis II
scaffold2475_118.7
AT4G34570
PWY-3742
tetrahydrofolate
biosynthesis II
scaffold2475_118.7
AT4G34570
PWY-3841
formylTHF
biosynthesis II
scaffold2475_118.7
AT4G34570
PWY-3841
formylTHF
biosynthesis II
scaffold2475_118.7
AT4G34570
PWY0-166
pyrimidine
deoxyribonucleotides
<i>de novo</i>
biosynthesis
scaffold2475_118.7
AT4G34570
PWY0-166
pyrimidine
deoxyribonucleotides
<i>de novo</i>
biosynthesis
scaffold26108_136.6
AT2G28880
COMPLETE-AROARA-PWY
superpathway of
phenylalanine, tyrosine
and tryptophan
biosynthesis
scaffold26108_136.6
AT2G28880
COMPLETE-AROARA-PWY
superpathway of
phenylalanine, tyrosine
and tryptophan
biosynthesis
scaffold26108_136.6
AT2G28880
TRPSYN-PWY
tryptophan biosynthesis
scaffold26108_136.6
AT2G28880
TRPSYN-PWY
tryptophan biosynthesis
scaffold26108_136.6
AT2G28880
PWY-3742
tetrahydrofolate
biosynthesis II
scaffold26108_136.6
AT2G28880
PWY-3742
tetrahydrofolate
biosynthesis II
scaffold9867_104.0
AT3G45140
PWY-735
jasmonic acid
biosynthesis
scaffold9867_104.0
AT3G45140
PWY-5410
13-LOX and 13-HPL
pathway
scaffold2718_146.3
AT1G32060
CALVIN-PWY
Calvin-BensonBassham cycle
scaffold2718_146.3
AT1G32060
PWYQT-4428
gluconeogenesis
scaffold2718_146.3
AT1G32060
PWY-5723
Rubisco shunt
scaffold2718_146.3
AT1G32060
PHOTOALL-PWY
oxygenic
photosynthesis
scaffold19888_108.2
AT4G36220
PWY-361
phenylpropanoid
biosynthesis
scaffold19888_108.2
AT4G36220
PWY-2181
free phenylpropanoid
acid biosynthesis
scaffold19888_108.2
AT4G36220
PWY-5168
ferulate and sinapate
biosynthesis
scaffold9628_56.1
AT5G03290
PWY-6549
glutamine biosynthesis
III
scaffold9628_56.1
AT5G03290
PWY-5464-PLANT
superpathway of
cytosolic glycolysis
(plants), pyruvate
dehydrogenase and
TCA cycle
scaffold9628_56.1
AT5G03290
PWY-5690
TCA cycle variation III
(eukaryotic)
scaffold9628_56.1
AT5G03290
PWYQT-4481
TCA cycle variation V
(plant)
scaffold1502_133.5
AT1G69640
PWY-5129
sphingolipid
biosynthesis (plants)
scaffold1502_133.5
AT1G69640
PWY-5129
sphingolipid
biosynthesis (plants)
scaffold3906_141.2
AT1G78270
PWY-2902
cytokinins-<i>O</i>glucoside biosynthesis
scaffold3906_141.2
AT1G78270
PWY-2902
cytokinins-<i>O</i>glucoside biosynthesis
C694124_200.0
AT5G34850
PWY-6348
phosphate acquisition
C694124_200.0
AT5G34850
PWY-6348
phosphate acquisition
C653028_30.0
AT5G65140
TRESYN-PWY
trehalose biosynthesis I
C597916_88.0
AT5G41480
PWY-3742
tetrahydrofolate
biosynthesis II
C597916_88.0
AT5G41480
PWY-3841
formylTHF
biosynthesis II
C706034_226.0
AT5G34930
COMPLETE-AROARA-PWY
superpathway of
phenylalanine, tyrosine
and tryptophan
biosynthesis
C706034_226.0
AT5G34930
COMPLETE-AROARA-PWY
superpathway of
phenylalanine, tyrosine
and tryptophan
biosynthesis
C706034_226.0
AT5G34930
PWY-3481
superpathway of
phenylalanine and
tyrosine biosynthesis
C706034_226.0
AT5G34930
PWY-3481
superpathway of
phenylalanine and
tyrosine biosynthesis
C706034_226.0
AT5G34930
PWY-3461
tyrosine biosynthesis II
C706034_226.0
AT5G34930
PWY-3461
tyrosine biosynthesis II
C725658_50.0
AT5G17420
PWY-1001
cellulose biosynthesis
C763007_141.0
AT3G49680
BRANCHED-CHAIN- superpathway of
AA-SYN-PWY
leucine, valine, and
isoleucine biosynthesis
C763007_141.0
AT3G49680
ILE-VAL-PWY
superpathway of
isoleucine and valine
biosynthesis
C763007_141.0
AT3G49680
PWY-3001
isoleucine biosynthesis
I
C763007_141.0
AT3G49680
ILEUSYN-PWY
isoleucine biosynthesis
I (from threonine)
C763007_141.0
AT3G49680
LEUSYN-PWY
leucine biosynthesis
C763007_141.0
AT3G49680
PWY-1186
homomethionine
biosynthesis
C763007_141.0
AT3G49680
VALSYN-PWY
valine biosynthesis
C763007_141.0
AT3G49680
PWY-4221ARA
superpathway of
pantothenate and
coenzymeA
biosynthesis
C763007_141.0
AT3G49680
PWY-3921
pantothenate
biosynthesis
C763007_141.0
AT3G49680
PWYQT-4471
glucosinolate
biosynthesis from
dihomomethionine
C763007_141.0
AT3G49680
ILEUDEG-PWY
isoleucine degradation
I
C763007_141.0
AT3G49680
LEU-DEG2-PWY
leucine degradation I
C763007_141.0
AT3G49680
VALDEG-PWY
valine degradation I
C725770_111.0
AT1G08520
CHLOROPHYLLSYN
chlorophyllide
<i>a</i> biosynthesis I
C725770_111.0
AT1G08520
PWY-5687
pyrimidine
ribonucleotides
interconversion
scaffold9005_141.5
AT3G17940
PWY-5114
UDP-sugars
interconversion
scaffold9005_141.5
AT3G17940
PWY-5114
UDP-sugars
interconversion
scaffold9005_141.5
AT3G17940
PWY-6317
galactose degradation I
(Leloir pathway)
scaffold9005_141.5
AT3G17940
PWY-6317
galactose degradation I
(Leloir pathway)
C725810_100.0
AT1G04220
PWY-5080
very long chain fatty
acid biosynthesis
C725810_100.0
AT1G04220
PWY-5080
very long chain fatty
acid biosynthesis
scaffold26103_112.4
AT3G55970
PWY1F-FLAVSYN
flavonoid biosynthesis
scaffold26103_112.4
AT3G55970
PWY1F-FLAVSYN
flavonoid biosynthesis
scaffold26103_112.4
AT3G55970
PWY-5152
leucodelphinidin
biosynthesis
scaffold26103_112.4
AT3G55970
PWY-5152
leucodelphinidin
biosynthesis
scaffold26103_112.4
AT3G55970
PWY1F-823
leucopelargonidin and
leucocyanidin
biosynthesis
scaffold26103_112.4
AT3G55970
PWY1F-823
leucopelargonidin and
leucocyanidin
biosynthesis
scaffold5421_83.9
AT4G34510
PWY-5080
very long chain fatty
acid biosynthesis
scaffold5421_83.9
AT4G34510
PWY-5080
very long chain fatty
acid biosynthesis
C762697_227.0
AT3G18680
PWY-5687
pyrimidine
ribonucleotides
interconversion
C762697_227.0
AT3G18680
PWY-5687
pyrimidine
ribonucleotides
interconversion
scaffold16837_142.6
AT5G20250
PWY-5337
stachyose biosynthesis
scaffold16837_142.6
AT5G20250
PWY-5337
stachyose biosynthesis
C735114_151.0
AT4G01690
CHLOROPHYLLSYN
chlorophyllide
<i>a</i> biosynthesis I
C735114_151.0
AT4G01690
PWY-5918
heme biosynthesis I
C735114_151.0
AT4G01690
PWYQT-62
superpathway of protoand siroheme
biosynthesis
C735114_151.0
AT4G01690
HEMEBIOSYNTHESIS-II
heme biosynthesis from
uroporphyrinogen-III I
scaffold12445_152.3
AT2G31750
PWY-5272
abscisic acid glucose
ester biosynthesis
scaffold12445_152.3
AT2G31750
PWY-5272
abscisic acid glucose
ester biosynthesis
scaffold20786_52.3
AT2G28880
COMPLETE-AROARA-PWY
superpathway of
phenylalanine, tyrosine
and tryptophan
biosynthesis
scaffold20786_52.3
AT2G28880
COMPLETE-AROARA-PWY
superpathway of
phenylalanine, tyrosine
and tryptophan
biosynthesis
scaffold20786_52.3
AT2G28880
TRPSYN-PWY
tryptophan biosynthesis
scaffold20786_52.3
AT2G28880
TRPSYN-PWY
tryptophan biosynthesis
scaffold20786_52.3
AT2G28880
PWY-3742
tetrahydrofolate
biosynthesis II
scaffold20786_52.3
AT2G28880
PWY-3742
tetrahydrofolate
biosynthesis II
C611922_36.0
AT2G35040
PWY-841
purine nucleotides
<i>de novo</i>
biosynthesis II
C611922_36.0
AT2G35040
PWY-841
purine nucleotides
<i>de novo</i>
biosynthesis II
C611922_36.0
AT2G35040
PWY-6124
inosine-5'-phosphate
biosynthesis II
C611922_36.0
AT2G35040
PWY-6124
inosine-5'-phosphate
biosynthesis II
scaffold16781_48.3
AT1G76490
PWY-922
mevalonate pathway I
scaffold16781_48.3
AT1G76490
PWY-5910
superpathway of
geranylgeranyldiphosp
hate biosynthesis I (via
mevalonate)
scaffold763_105.5
AT4G16765
PWY-3101
flavonol biosynthesis
scaffold763_105.5
AT4G16765
PWY-3101
flavonol biosynthesis
scaffold763_105.5
AT4G16765
PWY-6266-ARA
superpathway of
flavones and
derivatives biosynthesis
scaffold763_105.5
AT4G16765
PWY-6266-ARA
superpathway of
flavones and
derivatives biosynthesis
scaffold251_63.2
AT4G37870
PWYQT-4428
gluconeogenesis
scaffold251_63.2
AT4G37870
PWY-561
superpathway of
glyoxylate cycle
scaffold27346_210.5
AT5G13710
PWY-2541
plant sterol
biosynthesis I
scaffold18980_53.1
AT5G34850
PWY-6348
phosphate acquisition
scaffold18980_53.1
AT5G34850
PWY-6348
phosphate acquisition
scaffold25138_124.5
AT2G29750
PWY-5272
abscisic acid glucose
ester biosynthesis
scaffold25138_124.5
AT2G29750
PWY-5321
quercetin glucoside
biosynthesis
(Arabidopsis)
scaffold25138_124.5
AT2G29750
PWY-6266-ARA
superpathway of
flavones and
derivatives biosynthesis
scaffold11699_117.9
AT4G19860
LIPASYN-PWY
phospholipases
scaffold11699_117.9
AT4G19860
LIPASYN-PWY
phospholipases
C725888_60.0
AT5G09430
LIPAS-PWY
triacylglycerol
degradation
C725888_60.0
AT5G09430
LIPAS-PWY
triacylglycerol
degradation
C701468_120.0
AT3G22370
PWY-4302
aerobic respiration -electron donor III
scaffold450_114.3
AT3G20330
PWY-5686
uridine-5'-phosphate
biosynthesis
scaffold450_114.3
AT3G20330
PWY-5686
uridine-5'-phosphate
biosynthesis
scaffold25509_237.8
AT1G22440
PWY-6333
acetaldehyde
biosynthesis I
scaffold25509_237.8
AT1G22440
PWY-6333
acetaldehyde
biosynthesis I
scaffold25509_237.8
AT1G22440
PWY-5114
UDP-sugars
interconversion
scaffold25509_237.8
AT1G22440
PWY-5114
UDP-sugars
interconversion
scaffold25509_237.8
AT1G22440
PWY-3821
galactose degradation
III
scaffold25509_237.8
AT1G22440
PWY-3821
galactose degradation
III
scaffold25509_237.8
AT1G22440
PWY-4821
UDP-D-xylose
biosynthesis
scaffold25509_237.8
AT1G22440
PWY-4821
UDP-D-xylose
biosynthesis
scaffold25509_237.8
AT1G22440
ETOH-ACETYLCOA- ethanol degradation
ANA-PWY
scaffold25509_237.8
AT1G22440
ETOH-ACETYLCOA- ethanol degradation
ANA-PWY
scaffold25509_237.8
AT1G22440
PWY66-21
oxidative ethanol
degradation I
scaffold25509_237.8
AT1G22440
PWY66-21
oxidative ethanol
degradation I
scaffold25509_237.8
AT1G22440
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold25509_237.8
AT1G22440
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold25509_237.8
AT1G22440
PWY-5486
pyruvate fermentation
to ethanol II
scaffold25509_237.8
AT1G22440
PWY-5486
pyruvate fermentation
to ethanol II
scaffold23769_197.8
AT2G33150
PWY-735
jasmonic acid
biosynthesis
scaffold23769_197.8
AT2G33150
PWY-5136
fatty acid &beta;oxidation II (core
pathway)
scaffold23769_197.8
AT2G33150
PWY-561
superpathway of
glyoxylate cycle
C696392_60.0
ATCG00680
PHOTOALL-PWY
oxygenic
photosynthesis
C696392_60.0
ATCG00680
PWY-101
photosynthesis light
reactions
scaffold22774_78.0
ATCG00680
PHOTOALL-PWY
oxygenic
photosynthesis
scaffold22774_78.0
ATCG00680
PWY-101
photosynthesis light
reactions
scaffold11437_48.6
AT1G52570
PWY-4762
superpathway of
choline biosynthesis
scaffold11437_48.6
AT1G52570
PWY-4762
superpathway of
choline biosynthesis
scaffold11437_48.6
AT1G52570
PWY-3561
choline biosynthesis III
scaffold11437_48.6
AT1G52570
PWY-3561
choline biosynthesis III
scaffold11437_48.6
AT1G52570
LIPASYN-PWY
phospholipases
scaffold11437_48.6
AT1G52570
LIPASYN-PWY
phospholipases
scaffold26196_98.6
AT2G19800
PWY-5114
UDP-sugars
interconversion
scaffold26196_98.6
AT2G19800
PWY-4841
UDP-D-glucuronate
biosynthesis (from
<i>myo</i>-inositol)
scaffold27177_66.3
AT3G57520
PWY-5337
stachyose biosynthesis
scaffold27177_66.3
AT3G57520
PWY-5337
stachyose biosynthesis
C632278_222.0
AT1G55180
PWY-4762
superpathway of
choline biosynthesis
C632278_222.0
AT1G55180
PWY-3561
choline biosynthesis III
C632278_222.0
AT1G55180
LIPASYN-PWY
phospholipases
scaffold26215_152.5
AT3G55610
PWY-5004
superpathway of
citrulline metabolism
scaffold26215_152.5
AT3G55610
CITRULBIO-PWY
citrulline biosynthesis
scaffold26215_152.5
AT3G55610
PWY-3341
proline biosynthesis III
scaffold23774_114.5
AT1G72970
PWY-1121
suberin biosynthesis
scaffold23774_114.5
AT1G72970
PWY-1121
suberin biosynthesis
scaffold23774_114.5
AT1G72970
PWY-321
cutin biosynthesis
scaffold23774_114.5
AT1G72970
PWY-321
cutin biosynthesis
scaffold18979_105.5
AT5G34850
PWY-6348
phosphate acquisition
scaffold18979_105.5
AT5G34850
PWY-6348
phosphate acquisition
C649738_40.0
AT2G25840
TRNA-CHARGINGPWY
tRNA charging
pathway
C649738_40.0
AT2G25840
TRNA-CHARGINGPWY
tRNA charging
pathway
scaffold19806_222.9
AT5G47435
PWY-6121
5-aminoimidazole
ribonucleotide
biosynthesis I
scaffold19806_222.9
AT5G47435
PWY-6121
5-aminoimidazole
ribonucleotide
biosynthesis I
scaffold19806_222.9
AT5G47435
PWY-841
purine nucleotides
<i>de novo</i>
biosynthesis II
scaffold19806_222.9
AT5G47435
PWY-841
purine nucleotides
<i>de novo</i>
biosynthesis II
C760365_94.0
AT5G04950
PWY-5957
nicotianamine
biosynthesis
C760365_94.0
AT5G04950
PWY-5957
nicotianamine
biosynthesis
C748921_254.0
AT2G19800
PWY-5114
UDP-sugars
interconversion
C748921_254.0
AT2G19800
PWY-4841
UDP-D-glucuronate
biosynthesis (from
<i>myo</i>-inositol)
scaffold16008_128.3
AT5G34850
PWY-6348
phosphate acquisition
scaffold16008_128.3
AT5G34850
PWY-6348
phosphate acquisition
scaffold9253_68.0
AT2G15620
PWY-381
nitrate reduction II
(assimilatory)
C628610_215.0
AT5G34850
PWY-6348
phosphate acquisition
C628610_215.0
AT5G34850
PWY-6348
phosphate acquisition
scaffold15642_125.7
AT1G30820
PWY-5687
pyrimidine
ribonucleotides
interconversion
scaffold15642_125.7
AT1G30820
PWY-5687
pyrimidine
ribonucleotides
interconversion
C634142_104.0
AT4G16770
PWY-3101
flavonol biosynthesis
C634142_104.0
AT4G16770
PWY-3101
flavonol biosynthesis
C634142_104.0
AT4G16770
PWY-6266-ARA
superpathway of
flavones and
derivatives biosynthesis
C634142_104.0
AT4G16770
PWY-6266-ARA
superpathway of
flavones and
derivatives biosynthesis
scaffold8957_125.8
AT5G21105
PWY-2261
ascorbate glutathione
cycle
scaffold8957_125.8
AT5G21105
PWY-2261
ascorbate glutathione
cycle
C746725_98.0
AT4G02330
PWY-1081
homogalacturonan
degradation
C746725_98.0
AT4G02330
PWY-1081
homogalacturonan
degradation
C672026_110.0
AT2G27190
PWY-6348
phosphate acquisition
C672026_110.0
AT2G27190
PWY-6348
phosphate acquisition
scaffold2451_91.0
AT1G22380
PWY-2902
cytokinins-<i>O</i>glucoside biosynthesis
scaffold2451_91.0
AT1G22380
PWY-2902
cytokinins-<i>O</i>glucoside biosynthesis
scaffold14479_153.1
AT4G15530
PWY-6549
glutamine biosynthesis
III
scaffold14479_153.1
AT4G15530
PWY-6549
glutamine biosynthesis
III
CL795Contig1
AT5G65720
PWY0-1021
alanine biosynthesis III
CL795Contig1
AT5G65720
PWY-3701
biotin biosynthesis II
scaffold20016_145.7
AT1G24360
PWY-5156
superpathway of fatty
acid biosynthesis II
(plant)
scaffold20016_145.7
AT1G24360
PWY-5156
superpathway of fatty
acid biosynthesis II
(plant)
scaffold20016_145.7
AT1G24360
FASYN-ELONG-PWY fatty acid elongation -saturated
scaffold20016_145.7
AT1G24360
FASYN-ELONG-PWY fatty acid elongation -saturated
scaffold20016_145.7
AT1G24360
PWY-5973
<i>cis</i>-vaccenate
biosynthesis
scaffold20016_145.7
AT1G24360
PWY-5973
<i>cis</i>-vaccenate
biosynthesis
scaffold20016_145.7
AT1G24360
PWY-5971
palmitate biosynthesis
II (bacteria and plants)
scaffold20016_145.7
AT1G24360
PWY-5971
palmitate biosynthesis
II (bacteria and plants)
scaffold20016_145.7
AT1G24360
PWY-5989
stearate biosynthesis II
(plants)
scaffold20016_145.7
AT1G24360
PWY-5989
stearate biosynthesis II
(plants)
scaffold19678_132.7
AT1G24360
PWY-5156
superpathway of fatty
acid biosynthesis II
(plant)
scaffold19678_132.7
AT1G24360
PWY-5156
superpathway of fatty
acid biosynthesis II
(plant)
scaffold19678_132.7
AT1G24360
FASYN-ELONG-PWY fatty acid elongation -saturated
scaffold19678_132.7
AT1G24360
FASYN-ELONG-PWY fatty acid elongation -saturated
scaffold19678_132.7
AT1G24360
PWY-5973
<i>cis</i>-vaccenate
biosynthesis
scaffold19678_132.7
AT1G24360
PWY-5973
<i>cis</i>-vaccenate
biosynthesis
scaffold19678_132.7
AT1G24360
PWY-5971
palmitate biosynthesis
II (bacteria and plants)
scaffold19678_132.7
AT1G24360
PWY-5971
palmitate biosynthesis
II (bacteria and plants)
scaffold19678_132.7
AT1G24360
PWY-5989
stearate biosynthesis II
(plants)
scaffold19678_132.7
AT1G24360
PWY-5989
stearate biosynthesis II
(plants)
C584958_166.0
AT5G65720
PWY0-1021
alanine biosynthesis III
C584958_166.0
AT5G65720
PWY-3701
biotin biosynthesis II
scaffold22676_98.4
AT3G52990
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold22676_98.4
AT3G52990
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold22676_98.4
AT3G52990
PWY-5464-PLANT
superpathway of
cytosolic glycolysis
(plants), pyruvate
dehydrogenase and
TCA cycle
scaffold22676_98.4
AT3G52990
PWY-5464-PLANT
superpathway of
cytosolic glycolysis
(plants), pyruvate
dehydrogenase and
TCA cycle
scaffold22676_98.4
AT3G52990
PWY-5723
Rubisco shunt
scaffold22676_98.4
AT3G52990
PWY-5723
Rubisco shunt
scaffold22676_98.4
AT3G52990
GLYCOLYSIS
glycolysis I (plastidic)
scaffold22676_98.4
AT3G52990
GLYCOLYSIS
glycolysis I (plastidic)
scaffold22676_98.4
AT3G52990
PWY-1042
glycolysis IV (plant
cytosol)
scaffold22676_98.4
AT3G52990
PWY-1042
glycolysis IV (plant
cytosol)
scaffold22676_98.4
AT3G52990
PWY-5455
superpathway of starch
degradation to pyruvate
scaffold22676_98.4
AT3G52990
PWY-5455
superpathway of starch
degradation to pyruvate
scaffold22676_98.4
AT3G52990
PWY-5454
superpathway of
sucrose degradation to
pyruvate
scaffold22676_98.4
AT3G52990
PWY-5454
superpathway of
sucrose degradation to
pyruvate
scaffold6070_200.8
AT1G76130
PWY-842
starch degradation
scaffold6070_200.8
AT1G76130
PWY-842
starch degradation
scaffold6070_200.8
AT1G76130
PWY-5455
superpathway of starch
degradation to pyruvate
scaffold6070_200.8
AT1G76130
PWY-5455
superpathway of starch
degradation to pyruvate
scaffold6070_200.8
AT1G76130
PWYQT-4467
superpathway of
sucrose and starch
metabolism II
(photosynthetic tissue)
scaffold6070_200.8
AT1G76130
PWYQT-4467
superpathway of
sucrose and starch
metabolism II
(photosynthetic tissue)
scaffold17856_136.0
AT2G22480
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold17856_136.0
AT2G22480
PWY-3801
sucrose degradation to
ethanol and lactate
(anaerobic)
scaffold17856_136.0
AT2G22480
PWY-5464-PLANT
superpathway of
cytosolic glycolysis
(plants), pyruvate
dehydrogenase and
TCA cycle
scaffold17856_136.0
AT2G22480
PWY-5464-PLANT
superpathway of
cytosolic glycolysis
(plants), pyruvate
dehydrogenase and
TCA cycle
scaffold17856_136.0
AT2G22480
GLYCOLYSIS
glycolysis I (plastidic)
scaffold17856_136.0
AT2G22480
GLYCOLYSIS
glycolysis I (plastidic)
scaffold17856_136.0
AT2G22480
PWY-1042
glycolysis IV (plant
cytosol)
scaffold17856_136.0
AT2G22480
PWY-1042
glycolysis IV (plant
cytosol)
scaffold17856_136.0
AT2G22480
PWY-5455
superpathway of starch
degradation to pyruvate
scaffold17856_136.0
AT2G22480
PWY-5455
superpathway of starch
degradation to pyruvate
scaffold17856_136.0
AT2G22480
PWY-5454
superpathway of
sucrose degradation to
pyruvate
scaffold17856_136.0
AT2G22480
PWY-5454
superpathway of
sucrose degradation to
pyruvate
C761905_220.0
AT3G21420
PWY1F-FLAVSYN
flavonoid biosynthesis
C761905_220.0
AT3G21420
PWY1F-FLAVSYN
flavonoid biosynthesis
C761905_220.0
AT3G21420
PWY-5152
leucodelphinidin
biosynthesis
C761905_220.0
AT3G21420
PWY-5152
leucodelphinidin
biosynthesis
C761905_220.0
AT3G21420
PWY1F-823
leucopelargonidin and
leucocyanidin
biosynthesis
C761905_220.0
AT3G21420
PWY1F-823
leucopelargonidin and
leucocyanidin
biosynthesis
C669280_180.0
AT5G65720
PWY0-1021
alanine biosynthesis III
C669280_180.0
AT5G65720
PWY-3701
biotin biosynthesis II
scaffold21095_89.0
AT1G04920
SUCSYN-PWY
sucrose biosynthesis
scaffold21095_89.0
AT1G04920
SUCSYN-PWY
sucrose biosynthesis
scaffold21095_89.0
AT1G04920
PWYQT-4467
superpathway of
sucrose and starch
metabolism II
(photosynthetic tissue)
scaffold21095_89.0
AT1G04920
PWYQT-4467
superpathway of
sucrose and starch
metabolism II
(photosynthetic tissue)
C678228_90.0
AT5G36700
PWY-181
photorespiration
C678228_90.0
AT5G36700
PWY-181
photorespiration
scaffold3334_39.4
AT4G39350
PWY-1001
cellulose biosynthesis
scaffold3334_39.4
AT4G39350
PWY-1001
cellulose biosynthesis
scaffold10768_125.1
AT1G04920
SUCSYN-PWY
sucrose biosynthesis
scaffold10768_125.1
AT1G04920
SUCSYN-PWY
sucrose biosynthesis
scaffold10768_125.1
AT1G04920
PWYQT-4467
superpathway of
sucrose and starch
metabolism II
(photosynthetic tissue)
scaffold10768_125.1
AT1G04920
PWYQT-4467
superpathway of
sucrose and starch
metabolism II
(photosynthetic tissue)
C763881_31.0
AT5G53970
PWY-5886
4hydroxyphenylpyruvate
biosynthesis
C763881_31.0
AT5G53970
PWY-5886
4hydroxyphenylpyruvate
biosynthesis
C763881_31.0
AT5G53970
PWY-5864
superpathway of
plastoquinone
biosynthesis
C763881_31.0
AT5G53970
PWY-5864
superpathway of
plastoquinone
biosynthesis
C763881_31.0
AT5G53970
PWY-5079
phenylalanine
degradation III
C763881_31.0
AT5G53970
PWY-5079
phenylalanine
degradation III
C763881_31.0
AT5G53970
TYRFUMCAT-PWY
tyrosine degradation I
C763881_31.0
AT5G53970
TYRFUMCAT-PWY
tyrosine degradation I
scaffold5239_54.6
AT5G08370
PWY0-1301
melibiose degradation
scaffold5239_54.6
AT5G08370
PWY0-1301
melibiose degradation
scaffold5359_100.2
AT3G19270
PWY-5271
phaseic acid
biosynthesis
scaffold12739_93.8
AT1G67090
CALVIN-PWY
Calvin-BensonBassham cycle
scaffold12739_93.8
AT1G67090
NONMEVIPP-PWY
methylerythritol
phosphate pathway
scaffold12739_93.8
AT1G67090
PWY-5121
superpathway of
geranylgeranyldiphosp
hate biosynthesis II (via
MEP)
scaffold12739_93.8
AT1G67090
PWY-5723
Rubisco shunt
scaffold12739_93.8
AT1G67090
PHOTOALL-PWY
oxygenic
photosynthesis
scaffold12739_93.8
AT1G67090
PWY-181
photorespiration
C681282_128.0
AT2G29710
PWY-5272
abscisic acid glucose
ester biosynthesis
C681282_128.0
AT2G29710
PWY-5272
abscisic acid glucose
ester biosynthesis
Table 2 Pathways available for varius homolog of podophyllum genes having 2 fold or greater
expression at 25o C.
For GO enrichment analysis was performed for genes found expressed two folds or above at 15
degree C. Genes over expressed at 15o C was taken as annotation file and the GO analysis of whole
transcriptome of podophyllum was taken as Background/Reference for enrichment analysis.
6 GO molecular function categories were found significantly predominant in the set of genes overexpressed at 15 degree celsius.
GO term
Ontology Description
Number in
input list
Number in p-value
BG/Ref
FDR
GO:0003824 F
catalytic activity
654
2717
7.70E-008 9.2e-06
GO:0016740 F
transferase activity
350
1359
5.80E-006 0.00069
GO:0004672 F
protein kinase activity 240
872
6.70E-006 0.00079
GO:0016301 F
kinase activity
242
882
7.30E-006 0.00087
GO:0016773 F
phosphotransferase
253
activity, alcohol group
as acceptor
947
2.30E-005 0.0027
GO:0016772 F
transferase activity,
264
transferring
phosphorus-containing
groups
1011
5.80E-005 0.01
Figure 1: Destribution of genes at 15 degree and in reference (whole transcriptome)
Figure 2: Pictorial representation of GO terms found
enriched in genes expressed at 15 degree
For genes at 25o C no gene was found to be over expressed by agriGO.
References
1. Zhang, P., Dreher, K., Karthikeyan, A., Chi, A., Pujar, A., Caspi, R., Karp, P., Kirkup, V.,
Latendresse, M., Lee, C., Mueller, L.A., Muller, R. and Rhee, S.Y. (2010). Creation of a
Genome-Wide Metabolic Pathway Database for Populus trichocarpa Using a New Approach
for Reconstruction and Curation of Metabolic Pathways for Plants. Plant Physiology 153(4):
1479-1491.
2. Zhou Du, Xin Zhou, Yi Ling, Zhenhai Zhang, and Zhen Su agriGO: a GO analysis toolkit
for the agricultural community Nucleic Acids Research Advance Access published on July
1, 2010, DOI 10.1093/nar/gkq310. Nucl. Acids Res. 38: W64-W70.