Supplementary Table: Molecular mapping of Rf loci responsible for imparting fertility to respective CMS in different crops
Crop
CMS type
Population Type
Rice
WA -CMS
F2 (V20A ×PR103), (V20A × PR106)
Population size
Restorer
gene/QTL
Associated DNA Markers
Chromosome/LG
References
-
2 restorer genes
-
-
Bharaj et al. (1991)
-
Rf-1
SSR(OSRRf)
-
Akagi et al. (1996)
2 Rf (Rf3, Rf4)
RFLP(RG173 and RG532)
1and 10
Yao et al. (1997)
Rf-3
RAPD(PK05-800,
1
Zhang et al. (1997)
(V20A × PAU 502-94-1)
(IR57752A × PAU 1124-36-1)
(IR57752A × PAU 1126-1-1)
Rice
-
(MTC-10A × MTC-10R)
Rice
WA-CMS
F2, Zhenshan 97A × Minghui 63
Rice
WA-CMS
NIL,(Zhenshan 97 × IR24)
1000
-
F2 (Zhenshan 97 × ZSR21)
OPU10-1100 and
OPW01-350), RFLP
(RG532, RG140 and RG458)
Rice
WA-CMS
NIL, MTC-10R X MTC10A
-
Rice
WA-CMS
F2, (RD21A//RD21A / IR24)
122
F2, (RDA21A × IR13419-113-1)
197
Rice
WA-CMS
F2, (RD21A × IR24)
122
Rice
HL-CMS
BC,Congguang 41A//Miyang 23/
Rf-1
RFLP(fL601 and C16)
10
Ichikawa et al. (1997)
Two restorer QTLs
RFLP(C1361,R2309
10
Tan et al. (1998a)
and RG257 ),AFLP
Rf
RFLP(C1361 and S11148)
10
Tan, 1998b
-
Rf5(t)
SSR(RM258)
10
Huang et al. (2000)
-
Rf4
SSLP(RM171,RM228)
10
Jing et al. (2001)
gene qRf-10-2 ,
RM258-RZ811 ,RG532
1,5 and 10
Xie et al. (2002)
RFLP( R1877 and G2155),
10
Zhang et al. (2002)
10
Mishra et al. (2003)
-
Motomura et al. (2003)
Congguang 41B
Rice
WA-CMS
F2, (Zhenshan 97A × IR24)
Rice
-
RIL, (Xieqingzao B × Miyang 46)
210
QTL qRf-1
and 2 QTLs
Rice
WA-CMS
F2, NIL, (Zhenshan 97A × ZSR11 )
-
Rf4
F2, (Zhenshan 97A × ZSR11)
Y3-8,Y1-10
F2, (Zhenshan 97A × Y3-8)
F2, (Zhenshan 97A ×Y1-10)
Rice
WA-CMS
F2, (IR58025A × PRR-78)
-
Rf (u1)
STMS (RM258,
RM171 and RM294A)
Rice
-
BC,RT102C/Taichung 65//Taichung 65
-
Rf
-
F2, Taichung 65x RT102C
-
F2, F3, RT102C x Taichung 65
-
Rice
BT-CMS
BC, MSKoshihikari// FR-Koshihikari
Rice
HL-CMS
BC , Congguang 41A/MiYang 23
1042
Rf1
10
Komori et al. (2003)
1023
Rf5
SSR(MRG4456, HL01)
10
Huang et al. (2003)
1121
Rf-1
-
-
Kazam and Totiyama
(2003)
Rf1
-
-
Komori et al.( 2004)
/ Koshihikari
PCR based marker (S12564 Tsp509I
and C1361 MwoI)
//Congguang 41B
Rice
BT-CMS
BC,Chinsurah Boro II/Taichung 65//
Rice
BT-CMS
NIL,(MS Koshihikari x FR-Koshihikari)
Rice
BT-CMS
NIL, BC
6104
Rf1
-
-
Akagi et al. (2004)
Rice
HL-CMS
BC, CG-41A / MY23//CG41B,
1306
Rf5 and Rf6(t)
SSR (RM3150,
10
Liu et al. (2004)
YT-A x (YT-B x 93–11)
1512
RM1108 and RM5373
YT-A × (YT-B × MY23)
253
RM5373, RM6737
YT-A x (MY23 x 93-11)
70
and SBD07)
143
Rf1
SSR(RM171 and RM6100)
10
Tao et al. (2004)
-
Rf1
-
10
Komori and Imaseki (2005)
BC(96), F2(96)
Rfcw
CAPS, SSR
4
Fujii and Toriyama 2005
3 Rf loci for WA
-
-
Li et al. (2005a)
SSR (RM6737, RM304, RM171
10
Ahmadikah and Karlov
(2006)
-
Wang et al. (2006)
1 and 10
Sattari et al. (2007)
1 and 10
Tada (2007)
Chinsurah Boro II
Rice
CMS-D
BC, Dianyu 1A/WAB450-13//Dianyu 1B
Rice
-
NIL,MS Koshihikari × FR-Koshihikari
Rice
msCW-CMS
F2, BC, WR1/ Tichung native 65//
Tichung native 65
Rice
HL-CMS,
BC
-
WA- CMS
Rice
and HL CMS
F 2(Neda × Amol1)
WA-CMS
230
Rf4
RM5841 and RM228)
Rice
Rice
BT-CMS
All three CMS
F2,(731A× C9083)
1250
Rf-1
RFLP(Y3-8,C1361,S10019),
F2 (KFA × C98)
3000
(Rf1-a and Rf1b)
SNP(01-45)
Rf3 and Rf4
RG140/S10019,
-
S10019/BstUI
Rice
WA-CMS,
BT-CMS
NILs, CSSLs (Kinuhikari × IR36)
-
Rf-1,Rf-3,Rf-6(t)
SSR, CAPS
Rice
WA- CMS
F2, (IR58025A × IR42686R)
222
Rf3, Rf4, Rf6,Rf7
SSR(RM7003,RM 6344,
1,7, 10, 12
Bazrkar et al. (2008)
4
Fuji and Toryama (2009)
1
Alvi et al. (2009)
10
Ngangkham et al. (2010)
10
Nematzadeh and Kiani
(2010)
RM443 ,RM315,
,RM258 and RM591)
Rice
CW-CMS
Rice
WA-CMS
BC T65 / CWR// T65 and F2 (T65x CWR)
(CW fertility restorer line × CSSL209)
F2, Neda-A×IR36
F2(9184), BC(4032)
Rf17
209
CAPS, SNP 7–16
and SNP7–4,
Rf3
SSR(RM1, RM3233,
RM3873),
CAPS(RG140/EcoRI)
Rice
F2, (Pusa6A × PRR78)
WA-CMS
-
Rf4
STS,
(GNMS)
SSR(RM6737 and RM6100)
Rice
WA-CMS
F2, (Neda-A ×DN-33-18)
Rice
HL-CMS
F2, BC, YTA/9311//YTB, YTA/R5//YTB
328
Rf4
SSR(RM258, RM171,
RM591 and RM3148)
-
Rf5 and Rf6
SSR(RM3710 and RM22242)
8
Huang et al. (2012)
Rf2*
CAPS and
2
Itabashi et al. (2011)
DRCG-RF4-14 and DRCG-RF4-8
1
Suresh et al. (2012)
DRRM-RF3-5/DRRM-RF3-10
10
Rf5
SSR( RM6469 and RM25659)
10
Hu et al. (2012)
Three pairs of
-
-
Xian-hua et al. (2013)
Rf4
SSR(SSR1045 and AT801)
-
Kazama and Toriyama
(2014)
1200
Rf4
M19288 and M19280
10
Tang et al. (2014)
-
Rf4
-
-
Kheyr-pour et al. (1981)
rf1 and rf2
RFLP(umc97 and umc92)
3 and 9
Wise and Schnable (1994)
YTA/R6//YTB, F2 (YTA x9311),
(YTA x R5), (YTA x R6)
Rice
Rice
LD-CMS
CSSL, F2, F3
Rice-type CMS
(LD-Akihikari x CSSL204)
WA-CMS
F2 (IR58025Ax KMR3R)
1500
IR68897A x DR714-1-2R
-
Rice
HL-CMS
NIL,YTA//NIL/YTB
Rice
Dongxiang
F2 ( Novel CMS line × R463)
F2(88), F3(1500)
SNP(CAPS42-1 and SNP1)
1979
-
wild Rice,(Oryza
Rf3 andRf4
dominant genes
rufipogon)
Rice
WA-CMS
-
Rice
WA-CMS
F2, Zhenshan 97A × Minghui 63
Maize
CMS-C
BC
Maize
CMS-T
-
umc153 and sus1
Maize
WF9 × Ky21
CMS-T
rf2
RFLP (wxl, bn15.10,
9
Schnable and Wise (1994)
umcl53, susl and umc95)
Maize
CMS-T
-
Maize
CMS-S
Maize
CMS-S
BC,W182BN/CA × (W182BN/CA × KySI/S)
BC,
W182BN(CA)][(W182BN(CA)]KY21(S)]
BC,
W182BN(CA)][(W182BN(CA)]CE1(VG)]
Maize
CMS-S
-
Maize
CMS-S
NIL,
rf2
-
-
Cui et al. (1996)
-
Rf3
RFLP(whp and bnl17.14)
2L
Kamp et al. (1996)
-
rf3
2L RFLPs
2L
Kamp and Chase (1997)
51Rf restorer alleles
RFLP(whp1)
2L
Gabay-Laughnan et al.
(2004)
Rf3
SSR(UMC2184),
2L
Zhang et al. (2006)
-
-
CAPS(CAPSE3P1),
SCAR(SCARE12M7)
Maize
Maize
CMS-S
-
Rf9
-
-
Hu et al. (2006)
Gabay-Laughnan et al.
(2009)
Maize
CMS-S
-
Rf3
-
-
Xu et al. (2009)
Maize
CMS-T
BC, F2, (T) Rf8-8703/rf8-W64A×
Rf2a, Rf1,
CAPS
2L
Meyer et al. (2011)
(N) rf8-W64A/rf8-W64A
Rf8, or Rf*
Maize
CMS-S
-
19 loci
-
-
Feng et al. (2015b)
Brasicca
Pol CMS
BC Westar (pol) × Westar-Rf
-
Rfp and Rfn
RFLP(4ND7b and 4NB6)
LG18
Li et al. (1998)
Ogura CMS
F2, ‘Darmor.bzh’ ' × ’Yudal’
-
Rfo
RAPD (RAPD1, RAPD2,
-
Delourme et al. (1998)
-
Janeja et al.(2003a)
F2(117)
Rf5
SSR
7
napus
Brassica
napus
Brasicca
RAPD3 and RAPD4), RFLP
-
F2
70
Rft1, Rft2
napus
Brasicca
AFLP {(EACC/MCTT(105),
EAAG/MCTC80)}
-
F1, F2
Rfl
RAPD
-
Janeja et al. (2003b)
Ogura CMS
DH, (WC-009 × SC-105)
188
Rfo
SSR
LG N19
Feng et al. (2009)
Ogura CMS
-
-
Rfo
-
LG N19
Hu et al. (2008)
Tour CMS
F2,
-
Two genes
-
-
Pahwa et al. 2008
napus
Brasicca
napus
Brassica
napus
Brassica
napus
Brassica
Pol CMS
napus
Brassica
(1141A x Huayehui)x Wu108
-
Rfp
SCAR(SCAP0612ST
LGN9
Liu et al. (2012)
-
Havlikova et al. (2015)
NIL
3662
and SCAP0612EM2)
Ogura CMS
DH, F1(Rf line 3358 × MLCH175)
218
Rfo
-
Ogura CMS
O39-16 (Rforf) × condiment var. Cutlass
-
Rfo
sN12905,ScH03 and BolJon
O39-16 (Rforf) × canola B. juncea
-
line C668, O39-16 (Rforf) ×
-
-
Rf1
AFLP, SCAR
-
Ashutosh et al.( 2007)
-
Rf1
SCAR, EST-SSR, STS,
-
Bisht et al. (2015)
napus
Brassica
juncea
Tian et al. (2014)
resynthesized B. juncea line 15043
Brassica
Moricandia
Brassica juncea ×
juncea
arvensis
Moricandia arvensis
Brasicca
Moricandia
BC,Pusa Bold or Pusa Jaikishan/ MRS15//
juncea
arvensis
Brassica
fruticulosa
Pusa Bold or Pusa Jaikishan
Wheat
Timopheevi-CS
CS × (kotschyi)- and (variabilis)-Splt
Wheat
Timopheevi-CS
Wheat
Timopheevi-CS
Wheat
Timopheevi-CS
Wheat
Timopheevi-CS
Brasicca
BjESSR01 and BjEST01
F2,
Rf
SSR, ISSR
-
Atri et al. 2016
Rfv1
-
lB
Mukai and Tsunewaki
(1979)
-
Rf
-
1A, 6B
Mann et al. (1984)
-
Rf1 and Rf4
-
1A, 6B
-
Rfc3,Rf4
-
6RS
Maan,(1985)
Curtis and Lukaszewski
(1993)
Rf, Rf1, Rf3, Rf4
RFLP (Xksug48 , Xbcd249,
6BS, 1BS, ,
Ma and Sorrel (1995)
Xcdo442, Xcdo786, CD0786, H1
5AL
and CDOl189)
5D and 7BS
Rf3
RFLP(Xcdo388 and Xabc156)
1BS
Kojima et al. (1997)
Rfc4
-
6AS and 6BS
Borner et al. (1998)
One major QTL and
-
1B, 2B, 2A,
Ahmed et al. (2001)
juncea
Wheat
Timopheevi-CS
BC, CS(teemopheevi) / T. spelta//
-
125
CS(teemopheevi)
Wheat
TimopheeviCS
-
Wheat
Timopheevi-CS
RIL, T. aestivum cv. 'Chinese Spring'
66
× T. spelta var. duhamelianum
one minor QTL
4B, 6A
Wheat
Timopheevi-CS
F2 (75-3369A ×7269-10)
-
2Rf
SSR (Xgwm136, Xgwm150)
1 AS, 1BS
Zhang et al. (2003)
Wheat
Timopheevi-CS
F2, (R18 × ND36)
-
SSR(R18 and R9034)
1B, 5A, 7D
Zhou et al. (2005)
SCAR(E09-SCAR865),
-
Li et al. (2005b)
Wheat
2
D -type
(R9034 × ND36)
-
Rf3, two minor
fertility restorers
QTLs
BC, D2(cms) /Yi 4060//D2(cms)
-
D2Rf1
(CMS)
Wheat
msH1
SSR(Xgwm11 and Xgwm18)
T218 × chromosome addition line of
-
-
EST ( k01062)
6HchS
Martin et al. (2008)
6RS
Curtis and Lukaszewski
(2006)
2DS
Sinha et al. (2013)
6H(ch)S
Castillo et al. 2014
H1 in Chinese Spring (T21)
Wheat
Timopheevi-CS
Wheat
Timopheevi-CS
Rfc3, Rfc4
F2, (2041A × PWR4099)
120
Rf8
SSR (Xwmc503,
Xgwm296 and Xwmc112 )
Wheat
msH1
-
-
Two Rf genes
PCR based marker
Rf1H(ch)S
Wheat
msH1
-
-
Major gene(s)
1HchS
Castillo et al. 2015
and 6HchS
Wheat
-
-
Sorghum
IS1112 C (A3)
BC, A3Tx398//A3Tx398/IS1112C
-
BC, A3Tx398/IS1112C//B3Tx398
-
Sorghum
A1 (milo)
F2, (ATx623 x RTx432)
372
Rfmulti (Rfv1, Rfm1
and Rfn1)
-
1BS
Tsunewaki, 2015
Mmt1
-
-
Tang et al. (1998)
rf1
AFLP(Xtxa2582)
LG H
Klein et al. (2001)
LG E
Wen et al. (2002)
STS, SSR(Xtxp18 and Xtxp250)
(Xtxp18 and Xtxp250)
Sorghum
IS1112 C (A3)
BC, A3Tx398//A3Tx398/IS1112 C
Sorghum
IS1112 C (A3)
RIL, (IS1112 C × B3Tx398)
378
rf4
AFLP,
STS/CAPS(LW7 LW8, LW9)
Sorghum
-
F2, (1858), ATx623 xRTx432
Sorghum
IS1112 C (A3)
BC, A3Tx398 /14M18//A3Tx398
-
Sorghum
-
RIL, (IS8525 × R931945-2-2)
285
RIL, (B923296 × SC170-6-8), BC
233
218
Rf3 and Rf4
-
-
Tang and Pring (2003)
Rf1
-
-
Klein et al. (2005)
2 complementary
-
-
Tang et al. (2007)
Rf2
SSR(Xtxp304)
SBI-02
Jordan et al. (2010)
Rf(5)
M19288 and M19280
SBI- 04,
Jordan et al. (2011)
Rf6
SSR(SB2387 and SB2388)
genes
Sorghum
A1 and A2
RIL,( BTx642× QL12)
Sorghum
A1 and A2
(A1127× M35-1) and
SBI-05
(A2 N178 × M35-1)
-
4
Praveen et al. (2015)
Soybean
Soyabean
-
F2, (NJCMS1A × N23601)
-
2 pairs of duplicate
F2, (NJCMS1A × N23683), BC
-
dominant gene
F2, F2:3, (NJCMS1A × ‘Zhongdou5)
-
2 pairs of duplicate
-
-
-
Bai and Gai (2005, 2006)
SSR (Satt626, Satt300)
LG M, LG A1
Yang et al. (2007)
dominant gene
-
F2, (JLCMS82A ×JIHUI 1)
F2 (YA × 167)
Soybean
-
F2, (FuCMS5A × FuHui9)
Sunflower
PET1
F2
Sunflower
PET1
F2, F3, BC RHA325(CMS) × HA342
Soybean
Soybean
103
Rf
SSR (Sctt011 and Satt547)
SSR (Satt547)
J
Wang et al. (2010b)
Zhao et al. (2007)
-
Rf1
SSR
16
Dong et al. (2012)
183
Rf1
RAPD, SCAR(HRG01 ,HRG02)
-
Horn et al. (2003)
-
Rf1
AFLP (E32M36-155R
-
Kusterer et al. (2005)
E44M70-275A, E42M76-125A)
and E33M61-136R
Sunflower
CMS HA 89
F2, F3
-
Rf1
-
-
Jan and Vick (2007)
(Helianthus giganteus ×
-
Rf (4)
STS, SSR
LG3
Feng and Jan (2008)
Rf_PEF1
AFLP (E39M51_300R and
-
Schnabel et al. (2008)
LG13
Yue et al. (2010)
(PET)
Sunflower
CMS GIG2
H. annuus cv. HA 89)
Sunflower
PEF1
-
Sunflower
PET1
RHA439 × cmsHA441
E44M56_112A), SSR(ORS630)
-
Rf1
SSR (ORS511),
TRAP (K11F05Sa12-160)
Sunflower
PET1
F2, F3
Sunflower
PET1
F2, (CMS HA 89-3149 × RHA 280)
F2 (192)
Rf5
SSR (ORS728,ORS995)
LG13
Qi et al. (2012)
227
Rf3
SSR (ORS328, ORS331, ORS928,
LG7
Liu et al. (2012a)
ORS966, and ORS1092), EST
(HT619-1, HT619-2,
and HT1013)
Sunflower
CMS 514A
BC, F2, CMS 514A Amphidiploid H.
angustifolius/P 21
Cotton
G. harknessi
BC, 0-613-2R / Simian3// Simian3,
F2 (0-613-2R x Simian3), F2
(Zhong 12A-1 × 0-613-2R )
Cotton
-
F2, (A2× B418)
262
-
Rf6
8 SSR markers
LG3
Liu et al. (2013)
Rf1
RAPD
-
Guo et al. (1998)
Rf
RAPD( R6861, R6592), RFLP
-
Lan et al. (1999)
F2(92)
89
Cotton
CMS-D8,
BC, (D8R × D2R)F1 × normal cotton
-
Rf1 , Rf2
-
-
Zhang and Stewart (2001)
-
Rf1
RAPD and SSR
4
Liu et al. (2003)
Rf1, Rf2
RAPD (UBC1113000 , UBC188500)
CMS-D2
Cotton
-
F2
Cotton
CMSD8,
(DR8 × T-586) × ARK8518
79
CMSD2
D8R /TM-1//TM-1,
250
CMS-D8 x (A2D8 x TM-1)
137
(CMS-D8 x D2R) x ARK8518
103
Zhang and Stewart (2004)
STS(UBC6591500)
D2R / ARK8518//ARK8518
Cotton
CMS-D2,
BC, B416R / ARK8518//ARK8518
114
Rf1, Rf2
-
-
Feng et al. (2005)
UBC679700, UBC6591500)
CMS D8
Cotton
RAPD, STS (UBC1471400,
UBC607500
BC, XY-A /0-613-2R// XY-A
-
(ZMS12A / 0-613-2R// ZMS12A
-
SM16A /0-613-2R//SM16A
-
Cotton
CMS-D8
BC, D8R /SG 747// SG74
Cotton
CMS-D2,
BC, D2R × SG747//SG747
112
-
Rf1
RAPD,SSR, STS
-
Yin et al. (2006)
Rf2
RAPD, AFLP, CAPS, SSR
-
Wang et al. (2007)
Rf1 and Rf2
TRAP, SSR(NAU2232-550/650,
D5
Wang et al. (2009)
CAPS, SCAR, SSR(BNL3535)
9
Wu et al. (2014)
CMS D8
NAU2232-750/850,
NAU 2801-250)
Cotton
CMS-D2,
BC, F2, (ZBA× Zhonghui 46)
BC(409), F2(695)
CMS D8
Rf1
(cotton_D_gene_
10013437)
Cotton
-
P30A × Y18R
-
-
RFLP, SCAR, SSR
-
Zhang et al. (2012)
Pearlmillet
A1
F2, BC
-
3 or 2 gene
-
-
Yadav et al. (2010)
Pearlmillet
A4
F2, BC,81A4 / IPC 511//81A4
-
-
-
-
Gupta et al. (2012)
81A4 /IPC 804//81A4
-
-
81A4 × IPC 1518//81A4
-
RAPD(UBC487)
-
He et al. (1995), Jia et al.
(1997)
ICMA4 88004/ IPC 511//ICMA4 88004
ICMA4 88004 / IPC 804//ICMA4 88004
ICMA4 88004 × IPC 1518//ICMA4 88004
Common
CMS Sprite
BC, G08063//CMSSprite/R351
-
Fr and Fr2
bean
Triticale
Timopheevi-CS
CMS-Sprite / PI207228// CMS-Sprite
70
F2, CMSSalvo15/1 x Stan I
414
Fertility restoring
DArT
genes
Pigeonpea
F2 (ICPA 2039 × ICPR 2447,
188
Four QTLs
ICPA 2043 × ICPR2671)
(QTL-RF-1 to
ICPA 2043 × ICPR 3467)
QTL-RF-4)
6R, 6A, 6B,1BS
Stojałowski et al.(2013)
3A and 3A/3B
SSR
LG06 and LG11
Bohra et al. 2012
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