Recent advances in engineering plant tolerance to abiotic stress: achievements and limitations Basia Vinocur and Arie Altman Abiotic stresses, especially salinity and drought, are the primary causes of crop loss worldwide. Plant adaptation to environmental stresses is dependent upon the activation of cascades of molecular networks involved in stress perception, signal transduction, and the expression of specific stressrelated genes and metabolites. Consequently, engineering genes that protect and maintain the function and structure of cellular components can enhance tolerance to stress. Our limited knowledge of stress-associated metabolism remains a major gap in our understanding; therefore, comprehensive profiling of stress-associated metabolites is most relevant to the successful molecular breeding of stress-tolerant crop plants. Unraveling additional stress-associated gene resources, from both crop plants and highly salt- and droughttolerant model plants, will enable future molecular dissection of salt-tolerance mechanisms in important crop plants. Addresses The Robert H Smith Institute of Plant Sciences and Genetics in Agriculture and the Otto Warburg Center for Agricultural Biotechnology, The Hebrew University of Jerusalem, PO Box 12, Rehovot 76100, Israel Corresponding author: Altman, Arie ([email protected]) Current Opinion in Biotechnology 2005, 16:123–132 This review comes from a themed issue on Plant biotechnology Edited by Dirk Inzé Available online 11th February 2005 0958-1669/$ – see front matter # 2005 Elsevier Ltd. All rights reserved. DOI 10.1016/j.copbio.2005.02.001 responsive mechanisms to re-establish homeostasis and to protect and repair damaged proteins and membranes (Figure 1) [2]. In contrast to plant resistance to biotic stresses, which is mostly dependent on monogenic traits, the genetically complex responses to abiotic stresses are multigenic, and thus more difficult to control and engineer. Plant engineering strategies for abiotic stress tolerance [2] rely on the expression of genes that are involved in signaling and regulatory pathways [3,4] or genes that encode proteins conferring stress tolerance [5] or enzymes present in pathways leading to the synthesis of functional and structural metabolites [6–8]. Current efforts to improve plant stress tolerance by genetic transformation have resulted in several important achievements; however, the genetically complex mechanisms of abiotic stress tolerance makes the task extremely difficult. For this reason, biotechnology should be fully integrated with classical physiology and breeding [2,9]. Several comprehensive reviews on molecular mechanisms of abiotic stress tolerance and on engineering tolerance to stress, mainly profiling a large number of stressassociated genes and signal-transduction systems, have been recently published [3,10]. Several successful approaches to achieving tolerance through the genetic engineering of specific genes have been reviewed [2] and some pitfalls were also discussed [9]. In the present review, selected recent advances in our understanding of abiotic stress tolerance are presented, with special emphasis on several downstream processes. The use of model plants and the interacting factors in molecular breeding for crop tolerance to abiotic stress will also be discussed. Stress-associated genes and proteins: expression and proteomics Introduction In the face of a global scarcity of water resources and the increased salinization of soil and water, abiotic stress is already a major limiting factor in plant growth and will soon become even more severe as desertification covers more and more of the world’s terrestrial area. Drought and salinity are already widespread in many regions, and are expected to cause serious salinization of more than 50% of all arable lands by the year 2050 [1]. In a world where population growth exceeds food supply, agricultural and plant biotechnologies aimed at overcoming severe environmental stresses need to be fully implemented. Plant adaptation to environmental stresses is controlled by cascades of molecular networks. These activate stresswww.sciencedirect.com Stress-associated genes and proteins for each of the downstream steps can be grouped into major categories [2]. Some of these are discussed below (Figure 2). The role of ion and water transporters is not discussed here, as it was presented by us in an earlier review [2]. Signaling cascades and transcriptional control Genes involved in signaling cascades and in transcriptional control, such as mitogen-activated protein (MAP) [11] and salt overly sensitive (SOS) [12] kinases, phospholipases [13] and transcription factors (e.g. heat shock factor [HSF] and the C-repeat-binding factor /dehydration-responsive element binding protein [CBF/DREB] and ABA-responsive element binding factor/ABA-responsive element [ABF/ABRE] families) [10], have been Current Opinion in Biotechnology 2005, 16:123–132 124 Plant biotechnology Figure 1 Drought Salinity Chemical pollution Heat Cold Secondary stress Osmotic stress Oxidative stress Disruption of osmotic and ionic homeostasis; damage of functional and structural proteins and membranes Signal sensing, perception and transduction Osmosensors (e.g. AtHK1), phospholipid-cleaving enzymes (e.g. PLD), second messengers (e.g. Ca2+, PtdOH, ROS), MAP kinases, Ca2+ sensors (e.g. SOS3), calcium-dependent protein kinases (e.g. CDPKs) Transcription factors (e.g. CBF/DREB, ABF, HSF, bZIP, MYC/MYB) Transcription control Chaperone functions (Hsp, SP1, LEA, COR) Detoxification (SOD, PX) Stress-responsive mechanisms Gene activation Osmoprotection (proline, GlyBet, sugar polyols) Water and ion movement (aquaporin, ion transporter) Re-establishment of cellular homeostasis, functional and structural protection of proteins and membranes Stress tolerance or resistance Current Opinion in Biotechnology The complexity of the plant response to abiotic stress [2]. Primary stresses, such as drought, salinity, cold, heat and chemical pollution, are often interconnected and cause cellular damage and secondary stresses, such as osmotic and oxidative stress. The initial stress signals (e.g. osmotic and ionic effects or changes in temperature or membrane fluidity) trigger the downstream signaling process and transcription controls, which activate stress-responsive mechanisms to re-establish homeostasis and to protect and repair damaged proteins and membranes. Inadequate responses at one or more steps in the signaling and gene activation process might ultimately result in irreversible changes in cellular homeostasis and in the destruction of functional and structural proteins and membranes, leading to cell death. Abbreviations: ABF, ABRE binding factor; AtHK1, Arabidopsis thaliana histidine kinase-1; bZIP, basic leucine zipper transcription factor; CBF/DREB, C-repeat-binding factor/ dehydration-responsive binding protein; CDPK, calcium-dependent protein kinase; COR, cold-responsive protein; Hsp, heat shock protein; LEA, late embryogenesis abundant; MAP, mitogen-activated protein; PLD, phospholipase D; PtdOH, phosphatidic acid; PX, peroxidase; ROS, reactive oxygen species; SOD, superoxide dismutase; SP1, stable protein 1. extensively studied. However, most of these studies involved short-term experiments, which cannot provide conclusions as to the actual stress tolerance of crops. This is dependent on longer term plant performance with respect to biomass, yield data and the degree of recovery from stress. The following discussion focuses only on those studies where signal transduction and transcription factors were assessed over a longer term. It has been Current Opinion in Biotechnology 2005, 16:123–132 recently shown that the constitutive expression of the tobacco mitogen-activated protein kinase kinase kinase/ Nicotinia protein kinase 1 (MAPKKK/NPK1) in maize activates an oxidative signal cascade and leads to cold, heat, and salinity tolerance in the transgenic plants [11]. The transgenic maize maintained significantly higher photosynthetic rates, suggesting that NPK1 induces a mechanism that protects the photosynthetic machinery. www.sciencedirect.com Engineering plant tolerance to abiotic stress Vinocur and Altman 125 Figure 2 Stress-associated genes and proteins Plant breeding and molecular markers (e.g. QTLs) Signaling Hsps/ pathway chaperones components, and LEA transcription proteins factors Ion and water transport* ROS scavenging and detoxification Genetic transformation Acquired plant stress tolerance Other stressOsmolytes, response Carbon Polyamines osmometabolism mechanisms* protectants (e.g. apoptosis) Stress-associated metabolites Current Opinion in Biotechnology Acquired plant stress tolerance can be enhanced by manipulating stress-associated genes and proteins and by overexpression of stressassociated metabolites. Plant resistance to abiotic stress is a multigenic trait, depending on the combination of many genes, proteins and metabolic pathways all playing in concert. Stress-associated mechanisms that are not discussed in the present review are marked by an asterisk. Acquired plant tolerance to abiotic stress can be achieved both by genetic engineering and by conventional plant breeding combined with the use of molecular markers and quantitative trait loci (QTLs). Hsp, heat shock protein; LEA, late embryogenesis abundant; ROS, reactive oxygen species. Most current genomic research is carried out at the DNA and RNA levels, assuming that gene up- or downregulation will explain abiotic stress processes. However, there has been an increasing number of demonstrations of translational and post-translational regulation of stressassociated proteins in response to environmental stress. For example, using comparative proteomic analysis of the Arabidopsis root microsomal fraction, a novel component of salt stress signaling, annexin 1 (AnnAt1), was found to be upregulated upon stress [14]. AnnAt1 is a member of a multigene family of Ca2+-dependent membrane-binding osmotic stress-responsive proteins. Interestingly, the AnnAt1 gene transcript was constitutively expressed, while protein expression was upregulated in response to stress and the protein translocated from the cytosol to the membrane. The mutant plants annAt1 and annAt4 were found to be hypersensitive to salt and abscisic acid (ABA) during seed germination and early seedling growth. Heat-shock proteins and chaperones Heat-shock proteins (Hsps) and molecular chaperones, as well as late embryogenesis abundant (LEA) protein families, are involved in plant abiotic stress tolerance [2,5]. High temperature, salinity and drought stress can cause denaturation and dysfunction of many proteins. We thus expect that Hsps and LEA proteins help to protect against stress by controlling the proper folding and www.sciencedirect.com conformation of both structural (i.e. cell membrane) and functional (i.e. enzymes) proteins (see also Update). Indeed, positive correlations between the levels of several Hsps and stress tolerance have been described [5,15,16]. The increase in Hsp expression under conditions of abiotic stress was studied extensively by functional genomics and proteomics in different plant species [16–18]. A significant osmoprotective effect was obtained in Escherichia coli transformed with the cytosolic chaperonin CCP-1a from Bruguiera sexangula, [19]. Studies on plant genetic transformation with Hsp genes have dealt mostly with heat stress and thermotolerance. Overexpression of HSP101 from Arabidopsis in rice plants resulted in a significant improvement of growth performance during recovery from heat stress [20]. Overexpression of LEA proteins was correlated in several cases with desiccation tolerance, although the actual function of these proteins is still unknown [21]. Recently, overexpression of HVA1, a group 3 LEA protein isolated from barley (Hordeum vulgare L.), confering dehydration tolerance to transgenic rice plants was reported [22]. Reactive oxygen species Stress-induced production of reactive oxygen species (ROS) is another aspect of environmental stress in plants [23]. Alleviation of oxidative damage by the use of different antioxidants and ROS scavengers can enhance plant resistance to salt and drought. Transgenic tobacco Current Opinion in Biotechnology 2005, 16:123–132 126 Plant biotechnology plants overexpressing Chlamydomonas glutathione peroxidase in the cytosol and in the chloroplast displayed increased tolerance to oxidative stress, which was imposed using methylviologen, chilling and salt stress [24]. Overexpression of the aldehyde dehydrogenase AtALDH3 gene in Arabidopsis conferred tolerance to drought and salt stress [25]. The transgenic plants showed improved tolerance to dehydration, as well as to other types of stress (salt, heavy metals and hydrogen peroxide), suggesting that aldehyde dehydrogenase can maintain membrane integrity under osmotic stress. Aldehyde dehydrogenase catalyzes the oxidation of toxic aldehydes, which accumulate as a result of side reactions of ROS with lipids and proteins [26]. Stress-associated changes in metabolites and metabolomics Severe osmotic stress causes detrimental changes in cellular components. A wide range of metabolites that can prevent these detrimental changes have been identified, including amino acids (e.g. proline), quaternary and other amines (e.g. glycine-betaine and polyamines) and a variety of sugars and sugar alcohols (e.g. mannitol and trehalose) (Figure 2). Two general strategies for the metabolic engineering of abiotic stress tolerance have been proposed: increased production of specific desired compounds or reduction in the levels of unwanted (toxic) compounds [27]. However, modulation of a single enzymatic step is usually regulated by the tendency of cell systems to restore homeostasis, thus limiting the potential of this approach. Targeting multiple steps in the same pathway could help to control metabolic fluxes in a more predictable manner [28]. Amino acids Proline accumulation was correlated with improved plant performance under salt stress. Proline-level increments can be achieved in planta by overexpressing D1-pyrroline5-carboxylate synthetase (P5CS), as found, for example, in tobacco [28]. This approach also resulted in the upregulation of proline dehydrogenase, however, which reduces proline levels. Indeed, Arabidopsis transformation with proline dehydrogenase antisense [29] or a knockout of this enzyme [30] resulted in increased free proline accumulation and better growth performance under salt stress. To examine the possibility that plant growth reduction in response to osmotic stress might actually result from osmolyte accumulation, proline levels were manipulated by expressing mutated derivatives of P5CS from tomato in Saccharomyces cerevisiae [31]. The levels of proline accumulation and cell growth were inversely correlated in cells grown under normal osmotic conditions. Alternatively, proline might confer a protective effect by inducing stress-protective proteins. Exogenously applied proline and/or salt stress in Pancratium maritimum were found to induce the expression of ubiquitin, antioxidative enzymes, and dehydrins [32]. Current Opinion in Biotechnology 2005, 16:123–132 Amines Glycine-betaine is a widely studied osmoprotectant, the accumulation of which has been studied with respect to modifications of several metabolic steps. Betaine aldehyde decarboxylase from the halophyte Suaeda liaotungensis was introduced into tobacco plants and the in vitro plantlets were significantly resistant to salt conditions [33]. Similar results were obtained by transforming rice with the choline dehydrogenase gene (codA) from Arthrobacter globiformis; the gene product of codA catalyzes the oxidation of choline to glycine betaine via betaine aldehyde as intermediate. The transgenic rice plants recovered from salt stress and set seeds, in contrast to wild-type plants [34]. Tomato plants transformed with a bacterial codA gene targeted to the chloroplast were highly tolerant to chilling and oxidative stress, showing an increase in photosynthetic rate, plant survival, flower retention and fruit set [6]. Co-targeting multiple steps in the same pathway was found to be a successful strategy for overexpressing glycine-betaines in plants and bacteria. Indeed, stress tolerance was enhanced by the genetic engineering of E. coli and tobacco plants with the betaine aldehyde–choline dehydrogenase fusion protein [35]. Plant polyamines have previously been shown to be involved in plant response to salinity [36]. More recently, genetic engineering for increased biosynthesis of several specific polyamines resulted, in several cases, in stresstolerant plants [27]. Overexpression of arginine decarboxylase (ADC), ornithine decarboxylase and S-adenosylmethionine decarboxylase induced a significant increment in putrescine levels and a small increase in spermidine and spermine levels. Transgenic rice plants expressing Datura stramonium ADC under the control of the monocot Ubi-1 promoter produced much higher levels of putrescine under drought stress only, promoting spermidine and spermine synthesis and ultimately protecting the plants from drought [37]. Overexpression of spermidine synthase cDNA from Cucurbita ficifolia in Arabidopsis thaliana significantly increased spermidine levels, and consequently enhanced tolerance to various stresses [38]. Sugars and sugar alcohols Overall carbon metabolism and the levels of specific sugars are severely affected by abiotic stress. In Setaria sphacelata, a naturally adapted C4 grass, photosynthetic carbohydrate content was studied under conditions of both rapid and slow water deficit [39]. In short-term stress experiments, a decrease in sucrose and starch content was observed. In long-term experiments, a higher amount of soluble sugars and a lower amount of starch were found under stress. The shift of metabolism towards sucrose might occur because starch synthesis and degradation are more affected than sucrose synthesis [39]. Trehalose, a rare, non-reducing sugar, is present in many bacteria and fungi and in some desiccation-tolerant higher plants. Rice tolerance to multiple abiotic stresses through engineering www.sciencedirect.com Engineering plant tolerance to abiotic stress Vinocur and Altman 127 trehalose overexpression was reported [40,41]. The modest increase in trehalose levels in the transgenic plants resulted in a higher photosynthetic rate and in a decrease in photo-oxidative damage during stress. Trehalose is thought to protect biomolecules from environmental stress, as suggested by its reversible water-absorption capacity to protect biological molecules from desiccation-induced damage. The low levels of trehalose in transgenic plants can be explained by specific trehalase activity, which degrades trehalose; hence, it might be possible to increase trehalose accumulation by downregulating trehalase activity [42]. Mannitol is another sugar alcohol that accumulates upon salt and water stress and can thus alleviate abiotic stress. Transgenic wheat expressing the mannitol-1-phosphatase dehydrogenase gene (mtlD) of E. coli was significantly more tolerant to water and salt stress [43]. The transgenic wheat plants showed an increase in biomass, plant height and number of tillers (secondary stems in grasses). However, the amount of accumulated mannitol was too small to account for its effect as an osmolyte, and the authors suggested that it might act as a ROS scavenger. Metabolic profiling Overall metabolic profiling of plants under stress is an important tool to study stress-induced changes in metabolites. Arabidopsis metabolic profiling revealed that plants subject to a combination of drought and heat stress accumulate sucrose and other sugars, such as maltose and glucose. By contrast, proline, which accumulated in plants subjected to drought, did not accumulate in plants during a combination of drought and heat stress. Heat stress was found to reduce the toxicity of proline, suggesting that during the more severe, combined stress, sucrose replaces proline in plants as the major osmoprotectant [44]. Model plants can be employed to study abiotic stress tolerance All major crops are sensitive to salinity and sophisticated approaches for the molecular breeding of salt-tolerant crops are therefore needed. These will require the unraveling of additional stress-associated gene resources, from both crop plants and model plant species that are highly salt-tolerant. Most of the recent molecular studies on plant stress tolerance have used Arabidopsis (in addition to a limited number of crop plants), a typical glycophyte that is not adapted to salt or drought stress. A substantial number of halophytes (adapted to salt), as well as xerophytes (adapted to drought) or desiccation-tolerant plants, can use mechanisms of stress tolerance that are similar to those found in glycophytes. Some of these model plants are mentioned below. Model plants for studying drought tolerance Regular drought-tolerant plants can withstand moderate dehydration conditions of about 30% water loss. By contrast, desiccation-tolerant plants (generally referred to as www.sciencedirect.com resurrection plants) are tolerant to further cell dehydration, around 90% water loss, and also have the ability to rehydrate successfully. Resurrection plants have been widely used as model plants for dehydration studies [45]. The physiological basis of desiccation tolerance in resurrection plants is complex, and some mechanisms might vary between species. These studies suggest that desiccation tolerance in the vegetative tissues of C. plantagineum is unlikely to result from the presence of genes that are unique to resurrection plants, asthe relevant genes are also present in the genome of non-tolerant plants (e.g. LEA proteins [46]). Thus, the difference between desiccation-tolerant and non-tolerant plants is likely to reside in the expression patterns of the genes and is, in part, a quantitative characteristic [47]. Model plants for studying salinity tolerance The nature of salinity tolerance was studied in several halophytes. Mesembryanthemum crystallinum (ice plant) is a model C3/CAM (Crassulacean Acid Metabolism) halophyte that turned out to be a favorable model plant. Saltstress response mechanisms in the ice plant were studied with respect to both the salt-stress-induced C3/CAM shift and the consequent oxidative stress [48], and through the characterization of Na+/K+ transporters [49] and aquaporins [50]. Interestingly, it was demonstrated that the C3/ CAM shift effectively protects M. crystallinum against oxidative damage caused by simultaneous salinity and ozone treatments [48]. Thellungiella halophila (salt cress) is an extreme halophyte (Figure 3), which was recently shown to be a most amenable model plant for investigating tolerance to salinity stress. T. halophila is closely related to A. thaliana and expressed sequence tag analysis revealed 90–95% nucleotide identity in transcripts for well-known housekeeping genes, suggesting the presence of paralogous genes [51]. In contrast to Arabidopsis, however, Thellungiella tolerates extreme salinity, cold and drought. Furthermore, T. halophila shares many of the advantages of A. thaliana as an experimental system. It has a small genome (less than twice the size of the A. thaliana genome), a short life cycle, abundant seed production, and is amenable to transformation. High sequence homology at the cDNA level allows the use of Arabidopsis microarrays for expression profiling of Thellungiella. Initial transcript profiling experiments [51,52] have revealed that a similar level of salinity induces fewer genes in Thellungiella than in Arabidopsis; however, under salt-free conditions, some Thellungiella orthologs of stress-related Arabidopsis genes exhibit high base levels of expression. Salt tolerance in Thellungiella is associated with specific features of ion transport, including high K+/Na+ selectivity of ion uptake into root cells and K+/Na+ exchange between leaf epidermal and mesophyll cells. In addition, ion channels in Thellungiella root cells have higher K+/Na+ specificity than the respective Arabidopsis channels [51,53]. This Current Opinion in Biotechnology 2005, 16:123–132 128 Plant biotechnology Figure 3 Arabidopsis thaliana Thellungiella halophila 0 mM 200 mM 600 mM Current Opinion in Biotechnology Thellungiella halophila is an ideal model plant for studying salinity tolerance. T. halophila is a small halophyte that is highly tolerant to salt stress. It has a short life cycle and shares many biological and molecular similarities with Arabidopsis thaliana. The photograph shows the performance of T. halophila and A. thaliana plants grown for seven days in potting medium saturated with 0 mM, 200 mM and 600 mM NaCl. (Original photograph by A Altman.) observation was supported by X-ray microanalysis of ions in root sections, where a gradient of K+ and Na+ was identified from the epidermal tissues to the central cylinder, and also by the ability of T. halophilla to exclude Cl ions (A Altman, unpublished). Total sugars, as well as specific levels of glucose, fructose and mannitol and several amino acids were found to accumulate to very high levels in shoots of T. halophila during salt exposure [51] (A Altman, unpublished). Applied biotechnology: interacting factors in molecular breeding for crop tolerance The improvement of crop abiotic stress tolerance by classical breeding is fraught with difficulties because of the multigenic nature of this trait. Further complications arise from the large variability in stress sensitivity at different periods during the life cycle of a given plant. Of the various general types of plant response to salinity and drought stress, avoidance mechanisms mainly result from morphological and physiological changes at the whole-plant level. These are less amenable to practical manipulations. By contrast, tolerance mechanisms are caused by cellular and molecular biochemical modifications that lend themselves to biotechnological manipulation. The interacting factors are schematically presented in Figure 4. All types of abiotic stress evoke cascades of physiological and molecular events and some of these can result in similar responses; for example, drought, high salinity and freezing can all be manifested at the cellular level as physiological dehydration. A full elucidation of abiotic stress tolerance mechanisms, and an intelligent breeding strategy for stress tolerance, require clear and fact-based answers to a number of questions. Which genes and proteins are upregulated Current Opinion in Biotechnology 2005, 16:123–132 or downregulated by the different types of abiotic stresses? What are the functions of these stress-responsive genes and proteins? And, which can be used as genetic markers for the breeding and selection of stress-tolerant genotypes or otherwise successfully engineered in transgenic plants? The application of quantitative trait loci (QTL) mapping is one approach to dissecting the complex issue of plant stress tolerance. When fully developed, this approach will be of great significance to breeding for abiotic stress tolerance in plants [9]. QTLs associated with abiotic stress tolerance have been identified in many important crop species (e.g. salt stress in rice [54], drought stress in cotton [55], and cold stress in the woody plant Salix [56]). A high salt-tolerant indica rice variety was crossbred with a susceptible japonica rice variety [54] and QTLs were detected for seedling survival under stress, which correlated well with the degree of leaf damage and Na+ accumulation in the shoots. Frost-susceptible and frostresistant clones of Salix were crossed and frost tolerance at different time points was assessed by the number of new leaves, shoot-tip abscission, dry and fresh weight, height increment, ion leakage and visual injury [56]. The associated QTLs were different at different time points, suggesting an independent genetic relationship between non-acclimated and acclimated Salix. From an evolutionary point of view, all plant responses to stress and all tolerance mechanisms are programmed and genotype-specific. However, although adaptation to stress has some ecological advantages, its metabolic energy costs can result in yield penalties, consequently limiting their benefit for agricultural plants. Therefore, efficient www.sciencedirect.com Engineering plant tolerance to abiotic stress Vinocur and Altman 129 Figure 4 Osmotic stress Other stresses Desiccation (water deficit) Water and soil salinity Cold (cell freezing) Ion toxicity (metals, Na/Cl) heat, anaerobiosis (annoxia) oxidation, UV, wounding Impaired metabolism Gene activation Structural and functional proteins and metabolites Tolerance Cellular and molecular mechanisms ROS generation Growth regulators (e.g. ABA) Avoidance Whole plant morphological, anatomical and physiological changes Genetic engineering QTLs etc. Adaptation The ability of a genotype to survive and produce biomass relative to other species Current Opinion in Biotechnology Applied biotechnology: the interacting factors in molecular and conventional breeding for plant tolerance to abiotic stress. The major types of abiotic stress can be grouped under osmotic stress (resulting from drought and salinity, as well as freezing) and other environmental factors. These activate specific genes that are, in turn, responsible for the expression of structural (e.g. membrane) and functional (e.g. enzymatic) proteins, resulting in many cases in impaired metabolism, generation of reactive oxygen species (ROS), and synthesis or catabolism of several growth regulators (the foremost being abscisic acid [ABA]). The whole gene activation machinery — if well coordinated — is manifested either in stress tolerance (see definition) or stress avoidance. Both are responsible for plant adaptation to stress (see definition), which is the final aim of breeding specific genotypes for actual tolerance under field conditions. Tolerance is amenable to genetic engineering of specific genes, whereas whole-plant avoidance strategies depend on more conventional breeding schemes and quantitative trait loci (QTL) analysis. plant breeding for abiotic stress tolerance can be achieved only by combining traditional and molecular breeding. Conclusions and future perspectives Abiotic stresses, especially salinity, drought, temperature and oxidative stress, are the primary causes of plant loss worldwide. Therefore, plant biotechnologies aimed at overcoming severe environmental stresses need to be quickly and fully implemented, with intensive molecular-assisted traditional breeding and genetic engineering being at the forefront. In carrying out these studies on tolerance to abiotic stress, a number of factors should be taken into consideration. Firstly, we should keep in mind that a given tolerance-related mechanism should always be assessed with respect to its cross-talk with other stress-related genes/mechanisms. Secondly, most current studies use short-term stress treatments, rather than observing the effects of stress over longer periods — conditions that more closely mimic the life span of most crops. As physiological and molecular responses during short and long exposures to stress could differ, conclusions regarding actual tolerance, which must involve practical www.sciencedirect.com factors such as biomass, yield data and survival, cannot always be drawn. Thirdly, cycles of stress and recovery from stress (e.g. rehydration) are the prevalent processes occurring under natural conditions during different seasons, and under agricultural practices such as irrigation and salt leaching. Thus, the degree of recovery from stress, which also has its molecular basis, is as relevant as the response to stress. Our limited knowledge of stress-associated metabolism is still a major gap in our understanding of stress tolerance in many plant species. Therefore, comprehensive profiling of stress-associated metabolites, combined with stress metabolomics of major crop plants will be a key factor in molecular breeding for tolerance. Another area for future studies will be the detailed analysis of physiological and molecular mechanisms underlying salt tolerance in salt-tolerant model species, which will enable future molecular dissection of salt-tolerance mechanisms in important crop plants. It is reasonable to assume that a thorough comparative study of the expression and function of members of the same gene families in extreme halophytes and xerophytes will eventually assist in the breeding of salt-tolerant crop plants. Current Opinion in Biotechnology 2005, 16:123–132 130 Plant biotechnology Update Two recent papers highlight the possible role of small HSPs (sHSPs) and LEA proteins in tolerance to temperature and desiccation stress. The in vivo function of sHSPs in thermoprotection was successfully demonstrated by the constitutive expression of anti-sHSP single-chain fragment variable (scFv) antibodies in tobacco [57]. When scFv-transgenic plants were subjected to prolonged high temperature conditions they became yellow and then died, suffering mainly from total destruction of cellular membranes. The expression of the specific scFv prevented the formation of functional heat stress granules (HSGs), and resulted consequently in the collapse of different cell compartments at sublethal temperatures. In vitro, the presence of recombinant LEA proteins from the nematode Aphelenchus avenae (AavLEA1) and from wheat (Em) alone did not protect citrate synthase and lactate dehydrogenase from heat inactivation, but they exhibited a protective effect synergistically with the chemical chaperone trehalose. On the other hand, LEA proteins alone showed in vitro anti-aggregation activity upon desiccation and freezing of the enzymes, suggesting the involvement of LEA proteins in preventing the formation of aggregates of denaturated protein during water stress [58]. Acknowledgements This work was supported by the European Union (grant number QLRT-2001-00841 ‘ROST’ to A Altman). References and recommended reading Papers of particular interest, published within the annual period of review, have been highlighted as: of special interest of outstanding interest 1. Ashraf M: Breeding for salinity tolerance in plants. Crit Rev Plant Sci 1994, 13:17-42. 2. Wang W, Vinocur B, Altman A: Plant responses to drought, salinity and extreme temperatures: towards genetic engineering for stress tolerance. Planta 2003, 218:1-14. 3. Seki M, Kamei A, Yamaguchi-Shinozaki K, Shinozaki K: Molecular responses to drought, salinity and frost: common and different paths for plant protection. Curr Opin Biotechnol 2003, 14:194-199. 4. Shinozaki K, Yamaguchi-Shinozaki K, Seki M: Regulatory network of gene expression in the drought and cold stress responses. Curr Opin Plant Biol 2003, 6:410-417. 5. 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