BIOSPECKLE SIZE AND CONTRAST MEASUREMENT

BIOPHYSICS
BIOSPECKLE SIZE AND CONTRAST MEASUREMENT APPLICATION
IN PARTICLE SIZING AND CONCENTRATION ASSESSMENT
D. CHICEA
“Lucian Blaga” University, Faculty of Science, Dr. I. Ratiu Street, No. 5–7,
550024, Sibiu, Romania,
[email protected]
Received September 12, 2006
A coherent light scattering experiment was done. The scattering centers were
milk and urine. Different concentrations for each type of sample were used, digital
images were taken, movies were recorded, the contrast and the average speckle size
were calculated. We found that the speckle size decreases and the contrast decreases
as the particle concentration increases.
Key words: coherent light scattering, biological scattering centers, contrast,
speckle size.
1. INTRODUCTION
When coherent light crosses a medium having scattering centers an ununiformly illuminated image is obtained, currently named speckled image,
having a statistical distribution of the intensity over the interference field. The
speckled image appears as a result of the interference of the wavelets scattered
by the scattering centers, each wavelet having a different phase and amplitude in
each location of the interference field. The image changes in time as a
consequence of the scattering centers (SC hereafter) complex movement of
sedimentation and Brownian motion. This produces fluctuations of the image
intensity in each location of the interference field. These fluctuations give the
aspect of “boiling speckles” [1, 2].
The speckled image can be observed either in free space and is named
objective speckle or on the image plane of a diffuse object illuminated by a
coherent source; it is named subjective speckle in [1]. The review paper [2]
classifies the two types of speckled images as far field speckle and image
speckle. In this work the objective speckle, respectively far field speckle is
considered.

Paper presented at the 7th International Balkan Workshop on Applied Physics, 5–7 July
2006, Constanþa, Romania.
Rom. Journ. Phys., Vol. 52, Nos. 5– 7 , P. 625–632, Bucharest, 2007
626
D. Chicea
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It was often pointed out in the literature that the speckle parameters like
size, contrast, intensity and polarization carry information on the scattering
media. Dynamical speckle analysis has become a current method to characterize
the dynamic behavior of scattering medium such as flow, sediment and
Brownian movement. The motion of the speckle field was analyzed by
correlometric methods [3–5] or by laser speckle contrast analysis [6, 7]. The
speckle size can be used to measure the roughness of a surfaces [8–10] or to
determinate the thickness of semi-transparent thin slab like in [11]. Most of the
above mentioned experiments use the backscattered speckle configuration. In
papers like [12] a different optical set-up is used to measure the correlation
function in the near field, and show the near-field speckle dependence on the
particles size. The work reported in [13, 14] uses a transmission optical set-up to
measure the far field parameters like contrast and speckle size. The transmission
type of setup was used in the work reported in this paper, as well. The details are
presented in the following section.
2. EXPERIMENTAL SETUP AND DATA PROCESSING PROCEDURE
This type of set-up was used in the work reported in this paper and a
schematic is presented in Fig. 1.
Fig. 1 – The schematic of the experiment.
The He-Ne laser had a wavelength of 632 nm and a constant power of
2 mW. The active area of the glass cuvette was 12 mm thick. Measurements
were done at 3.5 degrees from the beam axis using a CMOS camera and data
acquisition was done on a PC using the USB port. The optical system of the
camera was removed, therefore the recorded images are the direct interference
on the CMOS detection matrix. Consequently the far field speckle was recorded,
not the speckle image.
The average contrast of the image, either acquired as a bitmap or extracted
from each of the frames of the movie, is calculated [1, 13, 14] as:
C=
< I (i, j )2 − < I >2 >
<I >
(1)
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where I(i, j) = I(xi, yj) is the intensity recorded by the cell (i, j) of the CCD, hence
stored in the pixel (i, j) of the array of pixels the image consists of. This is a
space contrast and not a time contrast, as pointed out in [15]. In (1) the angular
brackets stand for average over the entire 640 × 480 collection of intensity
values for an image that is processed.
In [1], [13] and [14] the average speckle size is defined as the normalized
autocovariance function of the intensity:
Sps =
Ri ( x , y ) − I ( x , y )
2
I ( x , y )2 − I ( x , y )
2
where
Ri ( x , y ) = I ( xi , yi ) ⋅ I (0, 0)
(2)
In this paper a different approach is proposed to calculate the speckle size.
For each vertical profile the normalized autocorrelation function [16] is
calculated. The speckle size for that profile is defined as the value of the x axis
(pixel number or distance, if multiplied by the pixel size on the CMOS) where
the autocorrelation function decreases to 1/e. An average is calculated for each
image and we define the speckle size as the average speckle size for that
particular image. A vertical profile is presented in Fig. 2 and the autocorrelation
function of that profile in Fig. 3.
Fig. 2 – A vertical intensity
profile.
3. RESULTS
First a preliminary experiment was conducted, by recording the far field
speckle produced by light scattering on starch, wheat flour, orange juice and
milk in deionized water at different dilutions, as targets. Whole milk in
suspension was chosen to test the new procedure described in Section 2 for
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D. Chicea
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calculating the speckle size and the contrast variation with the concentration of
the scattering centers, because the concentration can be easily changed in a
precise manner using a regular small volume syringe. When dissolving a powder
in water clusters of particles having different sized occur, having a statistical
distribution of the sizes, therefore the scattering centers concentration and size is
not precisely known.
Fig. 3 – The normalized
autocorrelation function.
In the first part of the experiment a grayscale bitmap image, having a
resolution of 640 × 480 pixels was recorded for different milk concentrations.
Fig. 4 and 5 present the recorded bitmaps for milk samples having the volume
ratios of 0.0012 and 0.0372.
Using a program written for this purpose the average intensity over the
recorded area, the average contrast and the average speckle size, in pixels, were
Fig. 4 – The far field speckle
for diluted whole milk having
the volume ratio of 0.0012.
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Fig. 5 – The far field speckle
for diluted whole milk having
the volume ratio of 0.0372.
calculated. The variation of the average contrast and of the average speckle size
with the concentration, expressed as volume ratio, for whole milk diluted in
deionized water are presented in Fig. 6 and 7.
Examining Fig. 6 and Fig. 7 we notice a big spread of the data in a small
concentration range between 0.06 and 0.08. This suggests that big differences
between pictures taken for the same sample at different moments might occur,
due to fluctuations. In order to verify this hypothesis, the experiment was
repeated. An uncompressed, 24 bits grayscale AVI type movie was recorded for
each concentration, using a framerate of 1 per second and the same resolution,
640 × 480 pixels.
A previous experiment using a data acquisition system revealed that the
autocorrelation time for this type of samples is around 0.1 seconds therefore a
framerate of 1 per second ensures that the images in consecutive frames are not
correlated and that the average over the 60 frames for each sample does not
depend on the specific time they were recorded at. Fig. 8 presents the variation
of the average intensity.
Fig. 6 – The average contrast
variation with the concentration.
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Fig. 7 – The average speckle
size variation with the concentration.
Fig. 8 – The average intensity variation with the concentration.
Fig. 9 presents the variation of the average contrast and Fig. 10 the
variation of the average speckle size with the concentration. The error bars on
Fig. 9 – The average contrast variation with the concentration.
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Fig. 10 – The average speckle size variation with the concentration.
the plots are the confidence intervals calculated using the Student test, for a 99%
confidence level, using:
l = t ⋅s
(3)
n
where t is the parameter of the Student test, s is the standard deviation calculated
as in section 2 and n is the number of frames, 60 for this experiment.
4. DISCUSSIONS AND CONCLUSIONS
Examining Fig. 8 we notice that at very small scattering centers (SC)
concentration the average intensity increases with the SC concentration, presents
a maximum and then decreases with the concentration. As the concentration
increases in the range where multiple scattering is dominant, the average
intensity remains constant.
The average contrast has a very fast increase with the SC concentration,
then displays a plateau and a fast decrease. As the concentration increases the
slope decreases in module and finally the contrast remains constant, as results
from Fig. 6 and Fig. 9. This result is similar with the results reported in [13].
The average speckle size presents a constant decrease with the SC concentration and a slight increase in the big concentration range, as presented in Fig. 7
and 10. The linear decrease is similar with the results reported in [13], except for
the big concentration range where data is not reported.
These results reveal that the speckle calculation algorithm presented in this
paper can be used to calculate the average speckle size. They also reveal that the
contrast speckle together with the average speckle size of the far field can be
used as a fast procedure in assessing the scattering centers concentration in a
biological fluid, in the small and medium concentration range.
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