bs_bs_banner Environmental Microbiology Reports (2014) 6(1), 100–105 doi:10.1111/1758-2229.12113 Anaerobic ammonium oxidation with an anode as the electron acceptor Bo Qu, Bin Fan,* Shikun Zhu and Yali Zheng State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China. Summary Anaerobic ammonium oxidation with an anode as the electron acceptor was realized in a dual-chamber microbial electrolysis cell (MEC). Nitrate was the main product that accounted for approximately 95% of ammonium consumed, but nitrite was also detectable. Using 16S ribosomal RNA analysis, we found that the microbial community attached to the electrode was dominated by Nitrosomonas europaea (40.3%) and the genus Empedobacter (34.7%), but no anammox bacteria were detected. Nitrosomonas europaea was shown to be necessary with an inhibition assay using allylthiourea. Certain soluble metabolites were found to have an important effect on the current production. These results show that there are many ways to oxidize ammonium biologically. Introduction The oxidation of ammonium is a critical step of the biological nitrogen cycle in natural environment, as well as in various artificial processes for eliminating nitrogen pollutants. There are two accepted pathway responsible for biological ammonium oxidation. In general, ammonium is sequentially oxidized to nitrate (NO3−) with molecular oxygen (O2) as the electron acceptor by specific groups of bacteria (Kowalchuk and Stephen, 2001) and archaea (Konneke et al., 2005). In the absence of O2, ammonium also can be oxidized with nitrite (NO2−) or NO3− as the electron acceptor to produce dinitrogen (N2) in a process called anammox (Kuenen, 2008), which catalysed by a group of bacteria known as anammox bacteria that belong to the phylum plancomycetes (Strous et al., Received 17 February, 2013; revised 13 September, 2013; accepted 26 September, 2013. *For correspondence. E-mail fanbin@ rcees.ac.cn; Tel. (+86) (0)10 62849142; Fax (+86) (0)10 62849142. © 2013 Society for Applied Microbiology and John Wiley & Sons Ltd 1999; Kartal et al., 2011). However, several biogeochemical studies have indicated that there may be more pathways for biological ammonium oxidation. Clement and colleagues (2005) and Shrestha and colleagues (2009) reported respectively that ammonium oxidation was coupled to dissimilatory reduction of iron to produce NO2− under anaerobic conditions in wetland soils. More recently, Yang and colleagues (2012) found that anammox might be coupled to iron reduction. In this process, N2, NO2− and NO3− were produced in anaerobic tropical upland soils, and N2 was the dominant product. The evidence in these studies suggested that some microorganisms may use Fe (III) as a terminal electron acceptor for anaerobic ammonium oxidation. Fe (III) primarily exists as insoluble, solid-phase minerals in circumneutral pH environment (Weber, 2006). Therefore, the extracellular electron transfer would be a potential mechanism involved in anaerobic ammonium oxidation coupled to solid-phase electron acceptors, suggesting that this reaction may also proceed in bioelectrochemical systems (BESs), in which electrodes could serve as the terminal electron acceptor. Extracellular electron transfer results from a need of respiration (Gralnick and Newman, 2007; Lovley, 2008). Many microorganisms have evolved mechanisms to move electrons outside of the cellular membrane to respire solid surfaces by using bacterial nanowires, outermembrane metalloproteins and/or soluble electron shuttles (Rabaey et al., 2007; Marsili et al., 2008; Logan, 2009). The most BESs reported by far were operated with organic compounds as substrates (Pant et al., 2010). Although some researchers speculated that ammonium could also be used as substrate in BESs due to this process capable of supplying electrons and energy (Kim et al., 2008; He et al., 2009), it is not yet well demonstrated experimentally, and little is known about the mechanisms responsible for this process. In this study, the possibility of anaerobic ammonium oxidation with an electrode as the electron acceptor was investigated by using a dual-chamber MEC with freshwater sediments as original inoculum, and with ammonium as the sole electron donor. The reaction products and the current were monitored, and the microbial community structure of the enrichment culture on the electrode surface was assessed through 16S ribosomal RNA (rRNA) gene analysis. Anaerobic ammonium oxidation with electrode reduction Fig. 1. Electrical current production with ammonium as electron donor in a microbial electrolysis cell inoculated with freshwater sediments. A. Electrical current production from ammonium (5 mM) after sediments were inoculated into the anode chamber. B. Electrical current production from repeated addition of ammonium (5 mM) with and without medium replacement. Arrows indicate points at which ammonia was added with and without medium replacement. 101 inoculum, the growth medium in the anode chamber was replaced for several times to wash out all the residues of the inoculum. All manipulations were done under the strict anaerobic conditions. When ammonium was added again, current production resumed after a brief lag. The third addition of ammonium resulted in a higher rate of current production without any lag and then generated a peak current of 0.698 mA (Fig. 1B), but subsequent additions typically did not increase current output significantly. Addition of more ammonium (e.g. 10 mM) also could not enhance the rate and peak value of current production, but proportionally prolonged the duration of current production (data not shown). A representative result of the current production and the concentrations of ammonium, NO3− and NO2− in the anode chamber after each addition of ammonium was shown in Fig. 2. Along with electrical current production, ammonium was consumed with NO3− as the main product. NO2− was also detected, but its concentration was always below the level of 0.1 mM. When ammonium was depleted, the current declined to the background level (< 0.01 mA), and the cumulative NO3− accounted for 95.4 ± 2.7% (mean ± standard deviation; n = 6) of the ammonium consumption. In contrast, there was no loss of ammonium and no current more than the background level was observed in the control MEC in which no sediment was inoculated. Moreover, ammonium consumption as well as NO3− and NO2− production would not be detected if the anode was disconnected from the cathode (data not shown). These results indicated that the ammonium oxidation was mainly an anaerobic biological process, in which the anode served as the terminal electron acceptor. Results and discussion Electrical currents and reaction products Experiments were conducted using microbial electrolysis cells (MECs), with anode and cathode chambers separated by a proton exchange membrane. Polished graphite plates were used for both anode and cathode. Strict anaerobic condition was maintained in both chambers by flushing with high purity helium gas throughout the experiments (details described in supporting information). Freshwater sediments (20 ml) were inoculated into the anode chamber (180 ml), and then ammonium sulphate (5 mM NH4+) was provided as the sole electron donor. In the start-up period, the currents increased gradually after a lag of 3–5 days, and then rapidly rose to a peak current at the 8th day, followed a rapid decline (Fig. 1A) due to the exhaustion of ammonium (verified by analysis of ammonium). To determine if the current production was facilitated by planktonic cells or by organic components in the Fig. 2. A representative result of the current, nitrate and nitrite concentrations in the anode chamber after the addition of 5 mM ammonium. Inset gives data of nitrite concentration. Arrows indicate point at which ammonium was added. © 2013 Society for Applied Microbiology and John Wiley & Sons Ltd, Environmental Microbiology Reports, 6, 100–105 102 B. Qu et al. Fig. 3. Effect of medium replacement on current production. The current by a mature culture that produced the stable current for 7 days without medium replacement (closed symbols and black trace), decline after replacement of fresh medium containing 5 mM ammonium (open symbols and red trace) and recovery after replacement of the mature medium (closed symbols and black trace). The coulombic efficiency (CE) was calculated to address the recovery of electron as electrical current from the oxidation of ammonium to NO3−. In mature cultures, the CE calculated for a single addition of ammonium was 32.7 ± 7.7% (n = 6). This value is generally lower than those reported by other MECs studies using acetate as substrate (Chae et al., 2009; Geelhoed and Stams, 2011). However, the reported CEs in MEC varied widely, with values ranging from 23% to 96% (Liu et al., 2010). For an MEC, the potential causes for a low CE are the loss of substrate due to methanogenesis (Call and Logan, 2008) and/or producing other electron sinks, such as secondary metabolites (Torres et al., 2010) and soluble microbial products (SMP) (Laspidou and Rittmann, 2002; Parameswaran et al., 2009). In this study, the possibility of methanogenesis occurring at the anode can be excluded because ammonium as substrate cannot support the growth of methanogens. Thus, the most possible reasons for the reduced CE would be that the majority of electrons from ammonium oxidation diverted from electrical current but into SMP and secondary metabolites. As described below, the possibilities were supported by the present of soluble metabolites in the mature culture, and a pronounced enrichment of heterotrophic bacteria accompanied by autotrophic nitrifying bacteria, which suggests that the SMP was produced by nitrifiers to support heterotrophic growth. Effects of soluble metabolites The colorless medium in the anode chamber gradually becoming light yellow after several days of running (typically 5–7 days) without the replacement of medium (shown in supporting information, Fig. S1). In contrast, no color change was observed in the anode chamber of the control MEC operated over 2 months. Moreover, we found that medium replacement caused a slower current increase (shown in supporting information, Fig. S2). This observation suggested that some microbial metabolites were involved in electron transfer to the electrode because it had been shown that medium replacement had no significant impact on current production if electrode-attached cells use direct contact as an only mechanism for transfer electron to the electrode (Bond and Lovley, 2003). To further investigate whether the potential microbial metabolites involved in electron transfer, medium replacement was performed with the mature culture that produced a stable current for 7 days without medium replacement (Fig. 3). Fresh medium caused a sharp decline in current production from approximately 0.69 mA to 0.08 mA, but when the mature medium was filtered with 0.22 μm-pore-diameter membrane and then returned into the anode chamber, current production was immediately restored to 85% of its original level within 1.5 h. In contrast, if the mature medium was not returned to replace the fresh medium, the current recovered back to similar level over 26 h. Repeated rounds of medium replacement produced similar results (data not shown). Medium replacement would remove the potential microbial metabolites as electron shuttle released to the medium and was frequently used as a method to determine whether electron shuttle is involved in extracellular electron transfer (Gregory et al., 2004; Marsili et al., 2008). These results indicated the present of soluble metabolites in mature medium able to promote electron transfer to the electrode. With the present results, it is not possible to determine whether the color change of medium with current production was the direct result of the production of the soluble metabolites. Attempts are underway to develop methods to identify the soluble metabolites and further elucidate its origin and role in electron transfer to electrodes. Additionally, we cannot exclude the possibility that electrodeattached cells might be able to transfer electrons to the electrode via direct contact in the absent of electron shuttles. However, the results present clearly indicated the importance of soluble metabolites involved in electron transfer to the electrode. Analysis of the microbial community attached to the electrode After the reactor was operated for 2 months, the anode was removed and the attached biomass was extracted. The composition of 16S rRNA gene sequences on the surface of anode was compared with the original inoculum (Fig. 4). There was a pronounced enrichment of © 2013 Society for Applied Microbiology and John Wiley & Sons Ltd, Environmental Microbiology Reports, 6, 100–105 Anaerobic ammonium oxidation with electrode reduction 50 Persentage 16S rRNA clones (%) Sediment Anode biofilm 40 30 20 10 0 Proteobacteria Fig. 4. Relative proportions of 16S rRNA gene sequences from clone libraries of the original inoculum and microbial community attached on the anodic electrode. Percentages are based on 451 and 375 sequences from clone libraries of the original inoculum and attached microbial community respectively. The right side of dashed line indicates relative proportions of sequences most similar to N. europaea and the genus Empedobacter from clone libraries of the original inoculum and microbial community attached on the anodic electrode. microorganisms belonging to the β-Proteobacteria and Bacteroidetes, which represented 41.6% and 36.0% of the total bacteria population respectively. No other microorganisms accounted for more than 8% of the total bacteria population colonizing the electrode. Furthermore, 96.8% of the sequences in β-Proteobacteria were most similar to Nitrosomonas europaea, and 96.3% of the sequences in Bacteroidetes were most similar to the genus Empedobacter (Fig. 4; supporting information, Table S1). The microorganisms known capable of extracellular electron transfer, such as some members in Geobacteraceae, were not found in community attached to the electrode, although they were present in the original inoculum and accounted for 2.2% of the total bacteria population (data not shown). No anammox bacteria were detected in community on the electrode using qualitative polymerase chain reaction assays. It was interesting to find that N. europaea and the genus Empedobacter were highly enriched and dominated the microbial community on the anode. Nitrosomonas europaea is the most commonly investigated nitrifying bacteria being able to oxidize ammonium to NO2−, with molecular O2 as the electron acceptor (Bock and Wagner, 2006). Up till now, N. europaea has not been reported to possess extracellular electron transfer ability. However, the fact that N. europaea is able to anaerobically oxidize 103 ammonium with NO2− as an electron acceptor (Bock et al., 1995; Beaumont et al., 2002) suggests that molecular O2 is not indispensable for its respiration. To further investigate whether N. europaea was directly related to the ammonium consumption and current production, allylthiourea (ATU), a specific inhibitor of N. europaea (Juliette et al., 1993), was added into the anode chamber. The addition of 0.1 mM of ATU caused an immediate decline of the current production and ammonium consumption (shown in supporting information, Fig. S3), indicating that N. europaea are indeed indispensable for the anaerobic ammonium oxidation with anode as electron acceptor. The genus Empodebacter is a group of chemoheterotrophic bacteria, which is capable of actively secreting the unidentified yellow pigments (Jooste and Hugo, 1999). It is known that a phylogenetically and metabolically diverse heterotrophic community would be supported by autotrophic growth of nitrifiers via production of SMP (Furumai and Rittmann, 1992; Kindaichi et al., 2004). However, 16S rRNA gene sequences analysis demonstrated that only the genus Empedobacter rather than other heterotrophic bacteria were highly enriched on the anode. A possible explanation for the specific enrichment of the genus Empedobacter may be that they were directly involved in electron transfer to electrode for anaerobic ammonium oxidation, which in return provided themselves with a competitive advantage over other heterotrophs. Previous studies have demonstrated that Pseudomonas sp. produced metabolites as electron shuttles, which enable other bacteria to achieve extracellular electron transfer (Rabaey et al., 2005; Pham et al., 2008). It is possible that the genus Empedobacter use a similar strategy to enable N. europaea to achieve extracellular electron transfer for anaerobic ammonium oxidation with the electrode as the electron acceptor, especially considering that the important effects of certain soluble metabolites on the current production. Clearly, the present concept is still largely hypothetical, and further research on the interactions between N. europaea and the genus Empedobacter and the electrode are necessary. Nitrate as a main product of the anaerobic ammonium oxidation with anode as electron acceptor is not an expected result. It is known that N. europaea cannot oxidize ammonium to NO3− because of lacking of nitrite oxidoreductase. However, analysis of 16S rRNA genes showed that no sequence recovered from the electrode was closely related to the sequences of known nitriteoxidizing bacteria (shown in supporting information, Table S1). A study by He and colleagues (2009) reported that NO3− accounted for 14.4 ± 19.9% of ammonium consumption in an ammonium-fed MFC. In that study, nitrite-oxidizing bacteria also could not be found on either the anode or the cathode. NO2− detected in the low concentration strongly suggested that it was an intermediate of © 2013 Society for Applied Microbiology and John Wiley & Sons Ltd, Environmental Microbiology Reports, 6, 100–105 104 B. Qu et al. anaerobic ammonium oxidation. Thus, further studies are needed to determine the pathway responsible for oxidizing NO2− to NO3−. Conclusively, the results presented here demonstrate for the first time that ammonium can be anaerobically oxidized to NO3− with an electrode as the terminal electron acceptor in a MEC. The finding may provide novel insight into the pathways of biological ammonium oxidation and have potential application in developing new methods for eliminating ammonium pollution. To further elucidate the mechanisms for this process, however, a better understanding of why and how N. europaea and the genus Empedobacter work together, and the whole process of the extracellular electron transfer need to be focused on in future studies. Acknowledgements We thank Dr. Guibing Zhu for valuable discussions and comments on the original manuscript, and for help with molecular experiments. This research is financially supported by the National Natural Science Foundation of China (No. 51278484 and No. 51308528) and the Major Science and Technology Program for Water Pollution Control and Treatment of China (No. 2011ZX07301-003). References Beaumont, H.J., Hommes, N.G., Sayavedra-Soto, L.A., Arp, D.J., Arciero, D.M., Hooper, A.B., et al. (2002) Nitrite reductase of Nitrosomonas europaea is not essential for production of gaseous nitrogen oxides and confers tolerance to nitrite. J Bacteriol 184: 2557–2560. Bock, E., and Wagner, M. (2006) Oxidation of inorganic nitrogen compounds as an energy source. Prokaryotes 2: 457–495. Bock, E., Schmidt, I., Striven, R., and Zart, D. (1995) Nitrogen loss caused by denitrifying Nitrosomonas cells using ammonium or hydrogen as electron donors and nitrite as electron acceptor. Arch Microbiol 163: 16–20. Bond, D.R., and Lovley, D.R. (2003) Electricity production by Geobacter sulfurreducens attached to electrodes. Appl Environ Microbiol 69: 1548–1555. Call, D., and Logan, B.E. (2008) Hydrogen production in a single chamber microbial electrolysis cell lacking a membrane. Environ Sci Technol 42: 3401–3406. Chae, K.J., Choi, M.J., Kim, K.Y., Ajaye, F.F., Chang, I.S., and Kim, A.I.S. (2009) A solar-powered microbial electrolysis cell with a platinum catalyst-free cathode to produce hydrogen. Environ Sci Technol 43: 9525–9530. Clement, J.C., Shrestha, J., Ehrenfeld, J.G., and Jaffe, P.R. (2005) Ammonium oxidation coupled to dissimilatory reduction of iron under anaerobic conditions in wetland soils. Soil Biol Biochem 37: 2323–2328. Furumai, H., and Rittmann, B.E. (1992) Advanced modeling of mixed populations of heterotrophs and nitrifiers considering the formation and exchange of soluble microbial products. Water Sci Technol 26: 493–502. Geelhoed, J.S., and Stams, A.J.M. (2011) Electricity-assisted biological hydrogen production from acetate by Geobacter sulfurreducens. Environ Sci Technol 45: 815–820. Gralnick, J.A., and Newman, D.K. (2007) Extracellular respiration. Mol Microbiol 65: 1–11. Gregory, K.B., Bond, D.R., and Lovley, D.R. (2004) Graphite electrodes as electron donors for anaerobic respiration. Environ Microbiol 6: 596–604. He, Z., Kan, J., Wang, Y., Huang, Y., Mansfeld, F., and Nealson, K.H. (2009) Electricity production coupled to ammonium in a microbial fuel cell. Environ Sci Technol 43: 3391–3397. Jooste, P.J., and Hugo, C.J. (1999) The taxonomy, ecology and cultivation of bacterial genera belonging to the family Flavobacteriaceae. Int J Food Microbiol 53: 81–94. Juliette, L.Y., Hyman, M.R., and Arp, D.J. (1993) Inhibition of ammonia oxidation in Nitrosomonas europaea by sulfur compounds: thioethers are oxidized to sulfoxides by ammonia monooxygenase. Appl Environ Microbiol 59: 3718–3727. Kartal, B., Maalcke, W.J., de Almeida, N.M., Cirpus, I., Gloerich, J., Geerts, W., et al. (2011) Molecular mechanism of anaerobic ammonium oxidation. Nature 479: 127–130. Kim, J.R., Zuo, Y., Regan, J.M., and Logan, B.E. (2008) Analysis of ammonia loss mechanisms in microbial fuel cells treating animal wastewater. Biotechnol Bioeng 99: 1120–1127. Kindaichi, T., Ito, T., and Okabe, S. (2004) Ecophysiological interaction between nitrifying bacteria and heterotrophic bacteria in autotrophic nitrifying biofilms as determined by microautoradiography-fluorescence in situ hybridization. Appl Environ Microbiol 70: 1641–1650. Konneke, M., Bernhard, A.E., de la Torre, J.R., Walker, C.B., Waterbury, J.B., and Stahl, D.A. (2005) Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437: 543–546. Kowalchuk, G.A., and Stephen, J.R. (2001) Ammoniaoxidizing bacteria: a model for molecular microbial ecology. Annu Rev Microbiol 55: 485–529. Kuenen, J.G. (2008) Anammox bacteria: from discovery to application. Nature Rev Microbial 6: 320–326. Laspidou, C.S., and Rittmann, B.E. (2002) A unified theory for extracellular polymeric substances, soluble microbial products, and active and inert biomass. Water Res 36: 2711–2720. Liu, H., Hu, H., Chignell, J., and Fan, Y. (2010) Microbial electrolysis: novel technology for hydrogen production from biomass. Biofuels 1: 129–142. Logan, B.E. (2009) Exoelectrogenic bacteria that power microbial fuel cells. Nat Rev Microbiol 7: 375–381. Lovley, D.R. (2008) Extracellular electron transfer: wires, capacitors, iron lungs, and more. Geobiology 6: 225–231. Marsili, E., Baron, D.B., Shikhare, I.D., Coursolle, D., Gralnick, J.A., and Bond, D.R. (2008) Shewanella secretes flavins that mediate extracellular electron transfer. Proc Natl Acad Sci U S A 105: 3968–3973. Pant, D., Van Bogaert, G., Diels, L., and Vanbroekhoven, K. (2010) A review of the substrates used in microbial fuel © 2013 Society for Applied Microbiology and John Wiley & Sons Ltd, Environmental Microbiology Reports, 6, 100–105 Anaerobic ammonium oxidation with electrode reduction cells (MFCs) for sustainable energy production. Bioresour Technol 101: 1533–1543. Parameswaran, P., Torres, C.T., Lee, H., Krajmalnik-Brown, B., and Rittmann, B.E. (2009) Syntrophic interactions among anode respiring bacteria (ARB) and non-ARB in a biofilm anode. Biotechnol Bioeng 103: 513–523. Pham, T.H., Boon, N., Aelterman, P., Clauwaert, P., De Schamphelaire, L., Vanhaecke, L., et al. (2008) Metabolites produced by Pseudomonas sp. enable a Grampositive bacterium to achieve extracellular electron transfer. Appl Microbiol Biotechnol 77: 1119–1129. Rabaey, K., Boon, N., Hofte, M., and Verstraete, W. (2005) Microbial phenazine production enhances electron transfer in biofuel cells. Environ Sci Technol 39: 3401–3408. Rabaey, K., Rodriguez, J., Blackall, L.L., Keller, J., Gross, P., Batstone, D., et al. (2007) Microbial ecology meets electrochemistry: electricity-driven and driving communities. ISME J 1: 9–18. Shrestha, J., Rich, J., Ehrenfeld, J., and Jaffe, P. (2009) Oxidation of ammonium to nitrite under iron-reducing conditions in wetland soils: laboratory, field demonstrations, and push-pull rate determination. Soil Sci 174: 156– 164. Strous, M., Fuerst, J.A., Kramer, E.H.M., Logemann, S., Muyzer, G., van de Pas-Schoonen, K., et al. (1999) Missing lithotroph identified as new planctomycete. Nature 400: 446–449. Torres, C.I., Marcus, A.K., Lee, H.S., Parameswaran, P., Krajmalnik-Brown, R., and Rittmann, B.E. (2010) A kinetic 105 perspective on extracellular electron transfer by anoderespiring bacteria. FEMS Microbiol Rev 34: 3–17. Weber, K.A. (2006) Microbes pumping iron: anaerobic microbial iron oxidation and reduction. Nat Rev Microbiol 4: 752–764. Yang, W.H., Weber, K.A., and Silver, W.H. (2012) Nitrogen loss from soil through anaerobic ammonium oxidation coupled to iron reduction. Nat Geosci 5: 538–541. Supporting information Additional Supporting Information may be found in the online version of this article at the publisher’s web-site: Fig. S1. Color change of the medium in the anode chamber as current production. A. Medium from the anodic chamber of the MEC operated for 7 days without medium replacement. B. Fresh medium. Fig. S2. Effect of medium replacement on current production. Arrows indicate point at which ammonium was added. Fig. S3. Effect of the addition of allylthiourea (ATU) on current production and ammonium consumption. Arrow indicates the point at which 0.1 mM of ATU was added. Table S1. Phylogenetic affiliation of clone sequences of bacterial 16S rRNA genes recovered from the microbial community attached to the anodic electrode. Appendix S1. Experimental procedures. Appendix S2. References. © 2013 Society for Applied Microbiology and John Wiley & Sons Ltd, Environmental Microbiology Reports, 6, 100–105
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