Journal of Experimental Botany, Vol. 64, No. 17, pp. 5263–5268, 2013 doi:10.1093/jxb/ert248 Advance Access publication 23 August, 2013 review paper GOLVEN peptides as important regulatory signalling molecules of plant development Ana Fernandez1,2,*, Pierre Hilson3,4 and Tom Beeckman1,2 1 Department of Plant Systems Biology, VIB, B-9052 Ghent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium 3 INRA, UMR1318, Institut Jean-Pierre Bourgin, RD10, F-78000 Versailles, France 4 AgroParisTech, Institut Jean-Pierre Bourgin, RD10, F-78000 Versailles, France 2 * To whom correspondence should be addressed. E-mail: [email protected] Received 30 May 2013; Revised 8 July 2013; Accepted 10 July 2013 Abstract The contribution of signalling peptides to plant development is increasingly evident as more new peptide families become identified. The recently discovered GLV/RGF/CLEL secreted peptide family comprises 11 members in Arabidopsis and has been shown by independent research groups to be involved in different plant developmental programmes such as root meristem maintenance, root hair development, and root and hypocotyl gravitropism. This short review summarizes our current knowledge on GLV/RGF/CLEL peptides and highlights future challenges to decipher their function. Key words: CLE-like (CLEL), GOLVEN (GLV), peptide signalling, root meristem growth factors (RGFs). Introduction In recent years, multiple genes coding for small secreted peptides have been discovered that control various aspects of plant development (Murphy et al., 2012). Among them, the GOLVEN (GLV)/root meristem growth factor (RGF)/CLElike (CLEL) gene family has been described by three independent groups (Matsuzaki et al., 2010; Meng et al., 2012; Whitford et al., 2012), thereby explaining the redundant nomenclature (Table 1). For clarity, they will be referred to as the GLV genes and gene products hereafter. This short review summarizes the results published so far describing the role of the GLV peptides. Structure of GLV peptides GLV genes were originally identified in Arabidopsis thaliana, but are conserved throughout the plant kingdom (Whitford et al., 2012). They code for small post-translationally modified peptides. Experimental evidence and similarity to other secreted signalling peptides suggest that the mature bioactive GLV peptides are produced by proteolytic cleavage of larger precursor proteins that share a common structure (Matsuzaki et al., 2010; Meng et al., 2012; Whitford et al., 2012). The GLV predicted precursor proteins have a length of 86–163 amino acids. Two main domains can be distinguished in their primary sequence (Fig. 1). The N-terminal domain contains a signal peptide (SP) that targets the protein to the secretory pathway. The C-terminal domain contains a motif conserved among all GLV members that defines the family and codes for the functional secreted mature peptide. A third region with little sequence similarity between GLV pre-proproteins connects the two aforementioned domains (Matsuzaki et al., 2010; Meng et al., 2012; Whitford et al., 2012). The genes coding for the GLV/RGF/CLEL peptides were identified in three independent in silico studies (Matsuzaki et al., 2010; Meng et al., 2012; Whitford et al., 2012). Because the sequence homology parameters differed between them, some genes were not originally identified by all three groups © The Author 2013. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: [email protected] 5264 | Fernandez et al. Table 1. Summary of the nomenclature of GLV/RGF/CLEL genes AGI code Whitford et al. (2012) Matsuzaki et al. (2010) Meng et al. (2012) At4g16515 At5g64770 At3g30350 At3g02240 At1g13620 At2g03830 At2g04025 At3g02242 At5g15725 At5g51451 At5g60810 AT1G66145 GLV1 GLV2 GLV3 GLV4 GLV5 GLV6 GLV7 GLV8 GLV9 GLV10 GLV11 – RGF6 RGF9 RGF4 RGF7 RFG2 RGF8 RGF3 – – RGF5 RGF1 – CLEL6 CLEL9 – CLEL4 CLEL1 CLEL2 CLEL3 CLEL5 – CLEL7 CLEL8 CLE18 (–) indicates that the gene was not retrieved in the corresponding study. peptides corresponding to the GLV motif greatly increased bioactivity, with phenotypes observed at nanomolar concentrations when applied to Arabidopsis seedlings (Matsuzaki et al., 2010; Whitford et al., 2012). Hydroxyprolination has been shown to increase the bioactivity of other plant peptides and may be further modified with the addition of O-linked l-arabinose chains (Matsubayashi, 2011). However the presence of hydroxyprolines in GLV mature peptides has not yet been associated with any functional role. GLV gene expression Expression patterns have been reported for all Arabidopsis GLV genes. They are collectively found in all parts of the plant including the root and the shoot, and during the vegetative and reproductive stages. Nevertheless the expression of different GLV genes is confined to specific cells or cell types. Root Fig. 1. The structure of GLV precursor proteins consists of two conserved domains connected by a variable region. The sequence of the native peptides has been identified for GLV1, 2, 3, and 11. (SO3) indicates a sulphated tyrosine residue, and (Hyp) refers to a hydroxyproline residue. SP, signal peptide; GLV, GLV motif. (Table 1). The current consensus is that the GLV/RGF/CLEL family comprises 11 members in Arabidopsis, all sharing the tripartite pre-proprotein structure described above. One additional pre-propeptide previously classified in the CLV3/ESR (CLE) peptide family, CLE18, has been linked to GLV peptides (Meng et al., 2012). However, unlike the other GLV/RGF/ CLEL precursors that carry a single conserved motif at or near their C-terminal side, the peculiar CLE18 pre-proprotein contains two such motifs: the first is embedded in the variable region and is reminiscent of the CLE peptide motif; and the second is positioned at the C-terminal end of the precursor and is similar to the GLV motif. Since the CLE18 GLV motif was the input sequence for Meng et al. (2012) to search for homologues and because most CLE and GLV precursors share a similar domain structure, they were named CLE-like (CLEL) peptides in this report. So far, the functional implication of the presence of these two different motifs in the same protein is unclear. The sequence of the native secreted peptide has been determined for GLV1, GLV2, GLV3, and GLV11 (Fig. 1). They are respectively 14, 15, 18, and 13 amino acids in length (Matsuzaki et al., 2010; Whitford et al., 2012) and carry two types of post-translational modifications: tyrosine sulphation and hydroxylation of one of the proline residues. As for secreted peptides of other families, tyrosine sulphation of synthetic Expression analysis in promoter–reporter lines, together with qRT–PCR studies, revealed that nine of the 11 GLV genes are active within the primary root and can be classified in three groups (Fernandez et al., 2013) (Fig. 2A). The first group comprises genes expressed in the quiescent centre (QC) and/or columella cells: GLV5, GLV6, GLV7, GLV10, and GLV11. The second group includes genes active in the meristematic region above the QC, mainly in the endodermis and cortex, but also in some vascular and epidermal cells: GLV3, GLV6, and GLV9. The third group corresponds to the genes transcribed in regions of the root above the meristem: GLV4 in the epidermis and GLV8 in the epidermis and cortex. The transcription of GLV5, GLV7, and GLV11 has also been mapped by in situ hybridization, in agreement with the reporter line results (Matsuzaki et al., 2010). No expression for GLV1 or GLV2 has been reported in the main root. In addition, expression of 10 GLV genes was detected in lateral roots (LRs) of the corresponding promoter–reporter lines (Fig. 2B). Interestingly, GLV promoter activity is activated at different stages of primordium or LR development. GLV6, GLV5, GLV10, GLV7, and GLV11 (in order of promoter induction) are transcribed early during primordium formation (from stage I to IV, according to Malamy and Benfey, 1997). GLV3 expression starts at primordium stage V and that of GLV9 and GLV2 after emergence. GLV4 and GLV8 are only transcribed in mature LRs, with transcription patterns similar to those found in the main root. To summarize, most GLV genes are active in specific portions of the root, suggesting they take part in different developmental processes. We recently proposed, as elaborated on below, that the three GLV expression domains observed within the primary root correspond to three functional groups (Fernandez et al., 2013). Shoot GLV gene expression is not only restricted to the root, and has also been reported in shoot tissues including the GOLVEN peptides in plant development | 5265 Fig. 2. (A) Summary of GLV expression patterns and functions reported so far. (B) GLV transcript appearance during primordium and lateral root (LR) development. Corresponding GLV overexpression phenotypes are indicated underneath. Primordium stages I–IV are shown according to Malamy and Benfey (1997). E, emerged; ELR, emerged LR. Modified from Fernandez et al., 2013, Plant Physiology 161, 954–970 (Copyright American Society of Plant Biologists; www.plantphysiol.org). hypocotyl, shoot apical meristem (SAM), cotyledon, leaf, stem, and flower (Fernandez et al., 2013). As observed in the root, GLV genes display differential expression in shoot organs, often confined to specific cell types or tissues. While sometimes partially overlapping, GLV shoot patterns are mostly specific to each gene. In young seedlings, GLV1, GLV2, GLV6, and GLV8 expression displays different patterns in cotyledons and leaves, while GLV6 is also found in the SAM and GLV8 in the stipules. Similarly, GLV1, GLV2, GLV6, and GLV8 are expressed in different floral organs, whereas GLV7 was detected only in the pollen (Fig. 2A). Although so far no clear functions for GLV genes have been ascribed to distinct developmental processes in the shoot, their cell- and tissue-specific expression patterns suggest a potential involvement in the aboveground parts. Developmental programmes involving GLV peptide signals Root gravitropism Overexpression of GLV genes results in a striking wavy and curly root phenotype that is further enhanced when the seedlings are germinated on slanted plates. Referring to this phenotype, they were named GOLVEN (GLV) which means ‘waves’ in Dutch (Whitford et al., 2012). Systematic overexpression of all GLV genes showed that up-regulation of GLV3, GLV6, and GLV9 resulted in the strongest curly root phenotype (Fernandez et al., 2013). This is an interesting observation because these three genes are transcribed in a similar domain above the QC within the primary root meristem (Fig. 2A). Quantitative gravistimulation assays with GLV3 gain- and loss-of-function lines, consisting of the 5266 | Fernandez et al. rotation of vertically grown seedlings by a 90 ° angle, revealed that the root response to gravistimulation was affected when GLV3 levels were altered: GLV3 overexpression results in partially agravitropic roots, while the gravitropic response of amiRglv3 seedlings was enhanced. Addition of synthetic GLV3 peptide to the growth medium under the same conditions also resulted in altered gravitropic responses (Whitford et al., 2012). Similarly, treatment with other GLV peptides disturbed the root growth direction of Arabidopsis seedlings grown on slanted plates (Fernandez et al., 2013). These results indicate that GLV peptides participate in the control of root gravitropic responses and that the level of GLV signal(s) in the root tip must be precisely tuned for normal gravitropic growth. It is likely that GLV peptides encoded by distinct genes act redundantly in this process because roots overexpressing different GLV family members or treated with different synthetic peptides displayed similar phenotypes, and because lines silenced solely for GLV3 showed only mild defects in gravitropism. The phenotype observed in GLV gain-of-function roots is reminiscent of mutants affected in the transport or the response to the phytohormone auxin. Therefore, we investigated whether GLV peptide and auxin pathways converge to control gravitropic responses, and discovered that GLV peptides modulate auxin fluxes following gravistimulation (Whitford et al., 2012). Treatment with GLV peptides hampers the formation of the lateral auxin gradient in gravistimulated roots. This gradient depends on the differential turnover of the auxin efflux carrier PIN2 between the lower and upper side of gravistimulated roots. Analysis of the PIN2 protein distribution in the plasma membrane (PM) of root tip epidermal cells showed that the PIN2 differential was reduced in GLV3 gain- and loss-of function mutants or upon peptide treatment. In addition, immunolocalization studies revealed that PIN2 protein levels in the PM of meristematic cells correlated with GLV3 transcript levels; that is, the PIN2 level was higher and lower in lines where GLV3 was overexpressed and silenced, respectively. Furthermore, GLV3 peptide addition resulted in the rapid accumulation of PIN2 in the PM and intracellular vesicles. In summary, the GLV3 peptide—probably with GLV6 and GLV9—appears to be secreted from inner cells layers (endodermis and cortex) in the root apical meristem (RAM) and modulates PIN2 intracellular trafficking in outer tissues, thereby altering the formation or maintenance of auxin gradients in the course of gravitropic responses. The molecular mechanism explaining how the extracellular GLV signal is perceived and relayed to control PIN2 trafficking is still unknown. Root apical meristem homeostasis The GLV/RGF peptide family was identified by Matsuzaki et al. (2010) because a sulphated 13 amino acid synthetic peptide derived from the C-terminal end of the GLV11/RGF1 precursor partially complements the short root phenotype of tpst mutant plants. Tyrosylprotein sulphotransferase (TPST) is apparently the sole enzyme catalysing tyrosine sulphation in Arabidopsis, and the tpst loss-of-function mutant displays pleiotropic phenotypes, probably reflecting defects in sulphated peptide signals (Komori et al., 2009; Zhou et al., 2010). RGF1 peptide treatment specifically suppressed the formation of extra QC cells observed in tpst roots and recovered meristematic activity in the presence of the additional PSK and PSY1 sulphated peptides. They were therefore named root meristem growth factors or RGFs. Although single rgf1 (corresponding to GLV11), rgf2 (GLV5), and rgf3 (GLV7) mutants do not display root defects, the rgf1 rgf2 rgf3 triple mutant has a short-root phenotype characterized by a decreased number of meristematic cortical cells. In agreement with the complementation of the tpst mutant phenotype, addition of the GLV11/RGF1 peptide to the rgf1 rgf2 rgf3 roots restored meristem size. Furthermore, overexpression of all GLV genes in wild-type plants increases RAM size, albeit to a different degree (Fernandez et al., 2013). These results indicate that some GLV/RGF peptides are involved in the control of meristematic activity in the primary root. However, gene overexpression and peptide application resulted in variable effects on RAM activity depending on the GLV member tested, suggesting that not all peptides have an endogenous role in this process and that the observed effects may, in some cases, be caused by the ectopic activation of non-cognate signalling pathways. This may occur if related GLV peptide ligands have residual affinity for their respective receptor(s), as noted, for example, for CLV3/CLE signalling peptides bound by the CLV1 membrane receptor (Ogawa et al., 2008). The role of GLV/RGF peptides in meristem maintenance involves the PLETHORA (PLT) transcription factors known to control stem cell fate (Matsuzaki et al., 2010). The plt1 plt2 double loss-of-function mutant has a reduced response to RGF1 peptide treatment, and addition of the RGF1 synthetic peptide modulates PLT gradients in the RAM, at both the transcriptional and post-transcriptional levels. It has been proposed that GLV/RGF peptides control meristem activity mainly through stabilization of the PLT1 and 2 proteins. Root hair development Unlike the other GLV genes expressed in root tissues, GLV4 and GLV8 are transcribed above the RAM (Fig. 2A). The GLV4 promoter is only active in the epidermal cells of the root elongation zone and the beginning of the differentiation zone. The GLV8 promoter drives gene expression in all the cortical cells and the non-hair epidermal cells of the mature root (Fernandez et al., 2013). This peculiar pattern suggested that the corresponding peptides may be involved in root developmental processes other than those described above. This hypothesis was confirmed by the observation that certain GLV overexpression lines produce defective root hairs characterized by the presence of extra branches. In agreement with their expression pattern, GLV4 and GLV8 overexpression resulted in the strongest root hair phenotype, and only loss-of-function mutants for these two genes had shorter hairs (Fernandez et al., 2013). Root epidermal cells are arranged in alternating files distinguished by their ability to produce root hairs or not. It is assumed that this pattern is the result of a cell–cell communication system that specifies trichoblast cells located adjacent to the intercellular space between underlying GOLVEN peptides in plant development | 5267 cortical cells (Tominaga-Wada et al., 2011). Epidermal cells are capable of responding to a cortical signal via the plasma membrane receptor kinase SCRAMBLED. However, while root hair length was reduced in the glv8-1 null mutant, the epidermal cell fate was not altered. It is therefore unlikely that the GLV4 and GLV8 ligands function to specify epidermal cell identity. Instead, their function in root hair development is probably only restricted to assist in proper root hair elongation. Lateral root development Ten out of 11 GLV genes are expressed during primordium or LR development (Fernandez et al., 2013). In addition, overexpression of some GLV genes resulted in a ‘naked’ primary root with very few emerged LRs. Strikingly, the ectopic expression of GLV genes transcribed at early stages of primordium initiation (stage I–IV) produced a strong reduction in the LR number, while those transcribed at later stages had only a minor effect (Fig. 2B). Treatments of wild-type plants with some GLV synthetic peptides had a similar effect (Meng et al., 2012). Although LR phenotypes in GLV loss-of-function mutants have not been analysed yet, expression data together with overexpression phenotypes suggest that GLV genes may also act during LR development. Shoot development While GLV1 and GLV2 are not transcribed in the main root, they are found in the outer cell layers of Arabidopsis hypocotyls (Whitford et al., 2012). Interestingly, the expression of these genes becomes asymmetric upon hypocotyl gravistimulation, with higher expression at the lower side of the reoriented organ. Auxin also accumulates in the lower side of gravistimulated hypocotyls and, not surprisingly, auxin induces GLV1 and GLV2 transcription. Furthermore, hypocotyls of GLV1 and GLV2 gain- and loss-of-function mutants have impaired gravitropic responses. Therefore, by analogy with GLV function in root gravitropism, GLV1 and GLV2 peptides may also control the intracellular trafficking of PIN proteins that redirect auxin fluxes during hypo cotyl gravitropic responses (Rakusova et al., 2011). However, the similarity between the root and hypocotyl reorientation mechanisms remains to be investigated. The potential PIN targets of the GLV signalling pathway have not yet been identified in the hypocotyl. Furthermore, in contrast to GLV1 and GLV2 expression in the hypocotyl, no GLV gene has been found to be asymmetrically transcribed in the root tip following its reorientation (unpublished results). The expression of several GLV genes in other shoot organs—including leaf, flower, and SAM domains—suggests that they have additional roles in the aerial portion of the plant. However, no phenotype has been reported so far to substantiate this hypothesis. For example, it will be interesting to determine whether GLV genes and gene products modulate specific components of the auxin transport machinery or key transcription factors in shoot cells as they do in the root meristem. Conclusions and future perspectives The current data indicate that GLV peptides act in a similar way to other described signalling peptides but their function in plant development is different. Several lines of evidence show that they are non-cell autonomous molecules that probably relay information to nearby cells. GLV bioactive peptides have been detected in medium conditioned with GLV overexpression plants, indicating that they are secreted into the apoplast. While the expression of some GLV genes has been detected in the endodermis and cortical cells of the RAM, they seem to control PIN2 protein trafficking in the epidermis. In addition, mutant phenotypes are often observed in cells or tissues where gene transcription is not detected, for example GLV8 is expressed in root cortical and non-hair cells but glv8 mutants have shorter root hairs. Therefore, by analogy with other known signalling systems, secreted GLV peptides are likely to bind receptor proteins in adjacent cell layers in which they trigger a signalling cascade. Nevertheless, it is worth mentioning that a GLV-driven autocrine mechanism cannot be excluded, for example in QC and RAM stem cells. The results obtained by independent research groups demonstrate that GLV peptides regulate different processes of root development. Yet, the dissection of the GLV signalling pathways has just begun and their discovery has prompted numerous questions that remain unanswered. For example, GLV peptides are involved in the control of auxin fluxes within the RAM on the one hand and in root meristematic activity on the other hand. However, it is still unclear whether these are the outputs of the same or different signalling pathways. Importantly, the identification of the GLV receptor(s) and its targets is essential and required to establish a molecular link between GLV signalling, PIN trafficking, and PLT stability. Based on the current data, it appears that GLV peptides have multiple ways to interfere with root development. Both meristem maintenance and gravitropism are processes heavily dependent on auxin. However, for gravitropic responses, GLV peptides seem to act upstream, influencing auxin transport, whereas in the root stem cell niche they appear to act downstream, on targets of the auxin signalling cascade. Alternatively, GLV regulation of auxin fluxes may influence PLT gradients and thereby control meristem activity. As another indication that GLV and auxin pathways may be tightly interconnected, five GLV genes are transcriptionally induced by auxin treatment (Zhou et al., 2010). In addition, mutations in the gene encoding the TPST enzyme, catalysing the sulphation of GLV peptides, affect the expression of PIN genes and auxin biosynthetic genes, as well as auxin accumulation in the root tip. Similarly, peptides belonging to other families have been shown to act in combination with phytohormone signalling (Chilley et al., 2006; Whitford et al., 2008; Kondo et al., 2011; Kumpf et al., 2013). It is thus tempting to speculate that the functions of locally secreted peptides and phytohormone responses encode regulatory feedback loops that determine the fate of specific cell populations in various environments. GLV expression and mutant phenotypes have been described in different plant parts. Are these results pointing 5268 | Fernandez et al. to shared signalling pathways? That is likely to be the case, as for peptides belonging to the CLE and IDA/IDL families, which are known to have similar functions in different plant organs (Fletcher et al., 1999; Butenko et al., 2003; Stahl et al., 2009; Kumpf et al., 2013). The regulation of auxin fluxes by GLV peptides can explain their role in the differential cell elongation resulting in gravitropic responses of root and hypocotyls. They may also control root hair growth and LR development through a similar mechanism, because auxin is actively involved in both processes. As for other families of secreted signalling peptides, some of the basic knowledge necessary to understand GLV action during plant development is still lacking. While the work at hand is challenging, it is comforting to consider that the coordinated development of the multicellular plant organs involves a wide range of signalling molecules. The discovery of the GLV/RGF/CLEL peptides added one tier to this complex phenomenon. Komori R, Amano Y, Ogawa-Ohnishi M, Matsubayashi Y. 2009. Identification of tyrosylprotein sulfotransferase in Arabidopsis. Proceedings of the National Academy of Sciences, USA 106, 15067–15072. Acknowledgements Meng L, Buchanan BB, Feldman LJ, Luan S. 2012. CLE-like (CLEL) peptides control the pattern of root growth and lateral root development in Arabidopsis. Proceedings of the National Academy of Sciences, USA 109, 1760–1765. AF is supported by the Flemish Science Foundation (FWO research project, G0273.13N). This work was in part financed by grants of the Interuniversity Attraction Poles Programme (IAP VI/33 and IUAP P7/29 ‘MARS’) from the Belgian Federal Science Policy Office to TB, and the Integrated Project AGRON-OMICS in the Sixth Framework Programme of the European Commission (grant no. LSHG-CT-2006-037704) to PH. We thank Dr Ive the Smet for useful comments on the manuscript. References Butenko MA, Patterson SE, Grini PE, Stenvik GE, Amundsen SS, Mandal A, Aalen RB. 2003. 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