N- P7001 N+ P7001 N- P7001 N- P216 N+ P7001 N+ P216 Supplementary Figure S1. The phenotypes of wheat line P7001 and P216. Small yellowish spots appear dispersedly on the leaves of P7001 under deficiency of nitrogen fertilizer (N-), while the spots were not observed in P7001 under the sufficient nitrogen fertilizer (N+). The yellowish spots do not appear in P216 irrespective of nitrogen dosages. a b 3,226 136,166 LM+ 4,466 LM- log10(FPKM of NRHRL+) Up regulated Down regulated Log10 (FPKM of LM-) Supplementary Figure S2. The expression analyses of transcripts. a) Venn diagram of transcripts unique and common to show the number of the gene expressed in LM+ and LM- bulks; b) Scatter plot showing the differentially expressed genes between LM+ and LM- bulks. Periplasm Cytoplasm Supplementary Figure S3. Ferredoxin-nitrite reductase (NiR) was significantly up-regulated in the Nitrogen metabolism pathway in LM+ bulk.
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