Two-dimensional Electrophoresis Analysis of Proteins in Response to Cold Stress in Extremely Cold-resistant Winter Wheat Dongnongdongmai 1 Tillering Nodes Cang Jing1, Yu Jing1, Liu Li-jie1, 2, Yang Yang1, Cui Hong1, Hao Zai-bin1, and Li Zhuo-fu3 1 College of Life Sciences, Northeast Agricultural University, Harbin, 150030, China College of Communication and Electronic Engineering, Qiqihar University, Qiqihar 161006, Heilongjiang, China 3 College of Agriculture, Northeast Agricultural University, Harbin, 150030, China 2 Abstract: The overwintering survival ratio of the cultivar Dongnongdongmai 1 with strong cold-resistance in paramos of Heilongjiang Province in China are over 85%. The tillering nodes are the most important organs for overwintering survival of winter wheat, because there are more substances associated with cold resistance in tillering nodes than those in leaves and roots. Proteins in the tillering nodes of the cold-resistant cultivar Dongnongdongmai 1 grown under field conditions with or without any low-temperature stress were analyzed by 2-dimensional electrophoresis and identified by mass spectrometry. In the range of pH 4-7, the expression of 37 proteins showed obvious difference (±more than two fold) in the proteomic maps of cold-stressed and non-stressed tillering nodes, including a new protein spot. All proteins exhibiting the difference in expression were identified using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, followed by a database search for protein identification and function prediction. Five groups of proteins were confirmed, namely stress-related proteins (22%), metabolism-associated proteins (35%), and signaling molecules (24%), cell wall-binding proteins (5%), unclear proteins (14%). This indicated that tillering node cells supported the energy requirements of plant growth and stress resistance by signal transduction adapting to metabolism and structure. Key words: Dongnongdongmai 1, proteome, two-dimensional electrophoresis, peptide mass fingerprinting CLC number: S512.1 Document code: A Article ID: 1006-8104(2012)-01-0027-09 Introduction Low temperature is a serious abiotic stress that limits productivity of agricultural crops. Many countries and regions in the world that suffer a severe winter have to adopt a 'one crop per annum' cropping system, which results in under-utilization of cultivated land. Therefore, the breeding of cold-resistant crop cultivars or increasing the multiple cropping index of cultivable land are the important strategies to increase crop productivity. Plants have the potential capability to adapt to adverse environment; for example, in low temperature, synthesis of stress-related proteins can be induced, soluble sugar and peroxide accumulate, membrane fluidity changes, the water content of tissues decreases, and the activity of protective enzymes is enhanced (Gana et al., 1997; Minami et al., 2005). Previous studies have explored physiological and biochemical metabolic aspects, molecular mechanisms and morphological development of cold stress. In view of the previous work, we investigated physiological indices of cold resistance in the winter wheat cultivar Dongnongdongmai 1 in a cold-winter area before overwintering and found that soluble protein content increased significantly following the decrease in temperature (Yu et al., 2008). Although previous studies had investigated plants' cold resistance at the protein level (Yin, 2005; Yi, 2006; Tai et al., 2008) the proteomic changes differed among different crops and tissues. In addition, the changes in protein abundance in winter wheat in response to low-temperature stress have not been examined using two-dimensional electrophoresis (2-DE) and mass spectrometry (MS). In this paper, proteomic change in tillering nodes of Dongnongdongmai 1 in response to cold stress was examined by means of 2-DE and MS analysis. Tillering nodes were used as experimental materials, because they had a high ability to store cold-resistance-related compound (Li, 2006). 1 1 Received 31 March 2011 Supported by Funding (Topic CXZ003) from the New Ideas Team and the Doctoral Research Foundation of Northeast Agricultural University (2008; 2010); The Scientific Research Fund of the Heilongjiang Provincial Education Department (11551067) Cang Jing (1963-), female. Ph. D, professor, engaged in the research of plant physiology and molecular biology. E-mail: [email protected] Materials and Methods Plant materials and field experiment Winter wheat (Triticum aestivum L.) cultivar Dongnongdongmai 1 was used in the experiment (an extremely cold-resistant cultivar with 85% overwintering survival ratio in field even under –30℃ in winter and the only winter wheat variety grown in Heilongjiang, China), and it was obtained from the Wheat Breeding Institue of Northeast Agricultural University, Harbin, China. The field trial was carried out in autumn, 2007 (September 9th), at Northeast Agricultual University's Xiangfang Experimental Site in Harbin, China (45°7'N, 126°6'E). Conventional fertilization and field management practices were used. The base fertilizer was applied with 21 g • m-2 nitrogen and 10 g • m-2 phosphorus. The cultivar was planted in multi-row (eight rows) plots with three replications. The rows were 4 m long and spaced 0.2 m apart with 400 seeds in each row. The seeds were sown in 5 cm in depth, and then watered with 8 L running water. The weather temperature was recorded from trefoil stage. Seedlings were subjected to cold stress with the decrease in temperature under natural conditions, tillering nodes of each treatment were collected when the temperature was 5℃ and lasted for 5 days (designated the control), and when the environmental temperature decreased to –30℃ and was lasted 5 days (designated the cold stress treatment). After collection, samples were immediately frozen in liquid nitrogen, and stored at –80℃ until use. Protein extraction and two-dimensional elec-trophoresis Total soluble proteins were extracted from tillering nodes with phenol and precipitated with ammonium acetate-methanol following the method described by Yu et al (2009). A clean mortar was chilled at –20℃ and precooled for 10 min with liquid nitrogen. One gram of tillering node tissue was ground in the mortar for 30 min with liquid nitrogen, and then 5 mL Tris-equilibrium phenol was added and extracted in an ice bath in a fume cupboard. The solution was transferred to a 50 mL centrifuge tube that was precooled with liquid nitrogen. The procedure was repeated and the extraction solution combined and thoroughly shaken with a shaking table rejoined Tris-equilibrium phenol 2 mL, misce bene, shaken and centrifuged at 4℃ at 18 000 r • min-1 for 10 min. The clear supernatant was transferred to a new centrifuge tube, 5 mL Tris-equilibrium phenol was added and incubated in an ice bath. The solution was transferred to a quondam tube and centrifuged at 4℃ at 18 000 r • min-1 for 10 min. The two supernatants were combined, an equal volume of 0.1 mol • L -1 ammonium acetate/methanol (–20℃) was added, and proteins allowed to precipitate overnight at –40℃. After centrifugation at 4℃ at 20 000 r • min-1 for 15 min, the supernatant was decant-ed off, and the pellet was washed twice in 10 mL 0.1 mol • L-1 ammonium acetate/methanol and 10 mL 80% acetone, respectively, and centrifuged at 4 ℃ at 18 000 r • min-1 for 10 min. The pellet was removed on vegetable parchment→albumen dry-power and was resuspended with extraction buffer. Protein content was measured with the 2D Quant Kit (GE Healthcare). The first dimension was a solid-phase pH gradient ampholine electrophoresis, using non-linear immobilized pH gradient (IPG) gel strips (pH 4-7, 24 cm; Amersham Biosciences). For all samples, 1 500 μg protein (450 μL) was loaded on the basic end of the IPG gel with adjustable volume pipettor. Isoelectric focusing was performed at room temperature using the following procedure: 30 V, 8 h; 50 V, 4 h; 100 V, 1 h; 300 V, 1 h; 600 V, 1 h; 1 000 V, 1 h; and 8 000 V, 10 h (a total of 26 h). Prior to the second-dimension analysis, the IPG gels were equili-brated for 15 min in reducing buffer (50 mmol • L-1 Tris-HCl, 6 mol • L-1 urea, 30% glycerin, and 1% DTT), and for a further 15 min in alkylating buffer (50 mmol • L-1 Tris-HCl, 6 mol • L-1 urea, 30% glycerin, and 2.5% iodoacetamide). The IPG gels were positioned on the stacking gel and sealed with 0.5% agarose. The separation in the second dimension was realized on 12.5% SDS-polyacrylamide gels at a constant current of 17 mA. After electrophoresis, the gels were stained with CBB-R250 as described by Yu et al (2009). Protein identification and mass spectro-graphic analysis Gel images were analyzed using Melanie 3.02 soft-ware (Genebio, Geneva). Specifically, spot detection, spot measurement, background subtraction, and spot matching were performed. The spots that were detected in cold-treated samples and the spots that increased in abundance in response to cold stress were subjected to peptide mass fingerprinting (PMF) by MS. The target protein spots were excised from gels and transferred to a 96-well PCR plate containing a small amount of MilliQ water. The matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) analysis of peptides was performed by the Peking Huada Protein Research and Development Center Co. Ltd. To obtain more information about proteins, the conserved domains were estimated from searches of the MSDB and NCBI databases. Results Fig. 1 shows the reference 2-DE electrophoretic maps obtained from control (5℃; Fig. 1a) and cold-stressed (–30℃; Fig. 1b) tillering nodes. Fig. 2 shows examples of protein spots that exhibited a significant increase or decrease in abundance between the control and cold-stressed nodes. The protein spots showed a broad distribution in pH ranged from 4.0 to 7.0. Approximately 800 proteins were detected on the CBB-R250 stained gels and about 735 protein spots were matched between three control gels and three cold-treated gels. Protein spots were compared by Melaine602 software. Obtaining 735 protein spots were distributed on uppermiddle part of gels. Fig. 1 Two-dimensional proteomic maps of winter wheat Dongnongdongmai 1 tillering nodes exposed to (designated the control) and (b) –30℃ (cold stressed) The circles and numbers indicate proteins differentially responsive to cold stress. (a) 5℃ Fig. 2 Matrix-assisted laser desorption/ionization time-of-flight mass spectrum of tryptic digest (protein spot 30), obtained in positive-ion delayed extraction reflector mode for the highest resolution and mass accuracy Variations in spot intensity between the control and treated samples were quantified by Image Master 2D software image analysis. More than 80 protein spots showed significant difference (p<0.5) from abundance values >2 and <0.5. Among these protein spots, 37 well-resolved repetitive spots were selected and excised for tryptic digestion and MALDI-TOF MS PMF charac-terization. The 37 reclaimed protein spots from the gel whose expression changed in response to cold stress were identified by mass spectra. These protein spots were obtained integrity peptid finger print (Fig.3) and their result databases were searched in Table 1. Of the 37 identified proteins, eight proteins (spot 17, 18, 20, 24, 25, 30, 35, and 37) were induced by abiotic stress (e.g. high temperature, low temperature, and drought); nine proteins (spot 2, 4, 5, 6, 15, 16, 22, 27, and 28) were signaling molecules; 13 proteins (spot 1, 7, 8, 11, 12, 13, 19, 23, 26, 31, 32, 34, and 36) were related to metabolic processes; two proteins (spot 3 and 14) were cell-wall-binding proteins; and five proteins (spot 9, 10, 21, 29, and 33) were unknown proteins. Among the 37 identified proteins, four proteins (spot 11, 12, 31, and 33) were down-regulated by cold stress, whereas the other proteins were up-regulated. Fig. 3 Examples of protein spots showing a marked increase or decrease in abundance between winter wheat Dongnong-dongmai 1 tillering nodes exposed to 5℃ (control) and –30℃ (cold stress) The numbers refer to the protein spots in Fig. 1. Table 1 Low-temperature-responsive proteins in winter wheat Dongnongdongmai 1 tillering nodes identified by peptide mass fingerprinting Spot No.1 Protein Source Score Sequence Coverage(%) 1 2 Phosphoenolpyruvate carboxylase Serine-threonine protein kinase Stipagrostis plumos 34 100% 3 Glycine-rich glycoprotein domain 83 27% + + 4 Calmodulin 52 79% + 5 Protein tyrosine kinase 60 19% + 6 Protein kinase Elaeis guineensis Triticum aestivum Phaseolus vulgaris Triticum aestivum Oryza sativa 72 39 49 12% + 7 Hydratase Arabidopsis thaliana 59 28% + 8 ATP1 71 17% + 9 Function unclear protein Schoepfia Ostreococcus tauri 83 17% + 10 F6N18.1 Arabidopsis thaliana 69 15% + 11 Starch synthase II Hordeum vulgare 54 17% - 12 5,10-Methylene tetrahydrofolate reductase 144 35% - 13 6-phosphoglucose dehydrogenase Triticum aestivum Triticum aestivum 109 32% + 14 Hydroxyproline-rich protein Pinus sylvestris 64 46% + 15 Core binding factor-type protein 44 11% + 16 Transcription factor 78 11% + 17 TIR-NBS-LRR-TIR type resistant protein Brassica oleracea Oryza sativa Populus trichocarpa 52 9% + 18 Resistant protein Arabidopsis thaliana 69 18% + 19 Glyceraldehyde-3-phosphate dehydrogenase B subunit Ostreococcus tauri 56 30% + 20 14-3-3 type protein Hordeum vulgare 203 81% + 21 Predict protein Physcomitrella patens 60 30% + 22 Glycosaminoglycan protein retron Oryza sativa 78 9% + 23 Lypoxygenase Capsicum annuum 71 25% + 24 23.5 kD Heat-shock protein 58 20% + 25 Cold-induced protein Triticum aestivum Oryza sativa 50 27% + 26 Dihydrofolic acid FH2 domain Arabidopsis thaliana 60 22% + 27 Serine-threonine protein kinase Fagus sylvatica 64 24% + 28 Phospholipid D Agropyron mongolicum 143 42% + 29 Unclear protein Oryza sativa 76 19% + 30 Heat-shock protein 70 Cucurbita maxima 199 42% + 31 Aepfelsaure-dehydrogenase Triticum aestivum 162 62% - 32 Nucleotide-binding protein Arabidopsis thaliana 69 36% + 33 Imaginary protein Oryza sativa 151 42% - (+/-) + 34 F0-F1 ATP carboxylase α subunit Sorghum bicolor 199 49% + 35 Small-subunit ribosomal protein Physcomitrella patens 60 48% + 36 α-glucosidase Arabidopsis thaliana 54 19% + 37 DNAJ heat-shock protein Nicotiana tabacum 53 42% + 1 For spot number see Fig. 1. Discussion Cryoprotective and antifreeze proteins At low temperature, the ability of protein synthesis is enhanced, and protein synthesis and changes in gene expression can be detected by changes in the polyribosome population (Li et al., 2004) After 5℃ cold adaptation, polyribosomes of winter rye increas-ed 63%, and protein synthesis increased to ensure seedlings' survival at low temperature (Li et al., 2004). Our research found that the small-subunit ribosomal protein (spot 35) was up-regulated, in accordance with the increased content of soluble proteins in Dongnongdongmai 1 following the decrease in temperature in field conditions (Yin, 2005). In addition, cold-induced proteins could protect plant cells and organs from injury resulting from low temperature (Li et al., 2004). These proteins were called cryoprotective proteins (Li et al., 2004). The COR15a gene, which codes for the chloroplast-target polypeptide, was expressed constitutively to improve the cold resistance of chloroplasts in non-adaptive plants (Uemura et al., 1996). In our research, a cold-induced protein (spot 25) up-regulated in response to –30°C cold stress was indicated to be related to the cold resistance of Dongnongdongmai 1 (Hincha et al., 1992). It was purified a 28.5 ku protein, termed a boiling-stability protein (low-temperature protectin) with cryoprotective activity, which was related to a 7 ku glycoprotein induced by cold stress. In the present study, heat-shock proteins (spot 24, 30, and 37) were up-regulated following exposure to –30℃ cold stress, but whether these proteins shared a similar function with cryoprotective proteins needed further investigation. Griffith purified antifreeze proteins with high cold-resistance activity from the apoplast of cold-adaptive winter wheat (Griffith et al., 1992). These proteins had similar functions to those of pathogenesis-related proteins, such as chitinase, endo-β-glucanase, and thaumatin-like proteins. After accumulating emergent evolution, these pathogenesis-related proteins acquired the function of binding ice crystals. Stress factors such as ethylene, ultraviolet radiation, ozone, salt, heat, phytotoxic metals, and wounding are reported to induce the synthesis of pathogenesis-related proteins in barley, potato, cabbage, and spinach (Hincha et al., 1997; Griffith et al., 1992; Gatschett et al., 1996). It was not a popular stress reaction, but a specific in grains cold resistance of apoplast antifreeze proteins (Li et al., 2004). Different proteins that execute cold-protective functions exist in monocotyledons and dicotyledons (Kuiper et al., 2001). In the present study, two disease-resistance proteins (spot 17 and 18) were matched with disease-resistance proteins of Arabidopsis thaliana, and were up-regulated in response to –30℃ cold stress, but whether either belongs to the apoplast proteins and increased the cold resistance of Dongnongdongmai 1 required further study. Membrane lipid modification-related proteins and signaling molecules Low temperature often results in reduction of membrane liquidity and initiation of photoinhibition. Previous studies reported the relationship between membrane liquidity and cold resistance (Jian, 1983). In recent years, molecular mechanisms of membrane lipid changes have been studied. For example, 3-P glyceroyl transacylase can enhance cold resistance of broccoli plants and reduce photoinhibition, and lipid transferase also has a protective function against cold or cold-related stresses (Pyee and Kolattukudy, 1995). The desaturase protein, induced by low temperature, can increase the degree of unsaturation of membrane lipids to enhance membrane liquidity and protect the plant from photoinhibition. For example, cold resistance in tobacco was decreased by transferal of the phospholipase D (PLD) gene, whereas cold resistance was increased by transferal of the antisense PLD gene (Li et al., 2004). In our study, in response to –30℃ cold stress, two membrane lipid modification-related proteins (spot 23, lipoxygenase; and spot 28, PLD) were up-regulated. The relationship between lipoxygenase and cold stress has not been investigated. PLD can exchange signals with Ca2+ messenger as a transmembrane signal to regulate cold resistance (Hincha et al., 1997), PLD can be activated by a variety of environmental stimuli, such as low tempera-ture, water stress, pathogen infection and hormone stimulation (Lee et al., 1997; Zhang et al., 2005). Protein kinase, a type of phosphotransferase, is activated by different upstream-signaling molecules in organisms exposed to a variety of stresses. The signals are transmitted to the cell nucleus by phosphorylating downstream molecules to regulate the expression of specific genes and ultimately to induce a physiological reaction to the stress. This mechanism is very important in the stress-resistant physiology of plants (Yin, 2005). There are five kinds of protein kinase; in our study, the expression of four protein kinases (spot 2, 5, 6, and 27) increased with exposure to –30℃, including serine-threonine protein kinase and tyrosine kinase. On the basis of expression characteristics, there are two kinds of transcription factors, namely constitutive and inducible. Most constitutive transcription factors are expressed only in adversity and are regulated by self-feedback. For example, CBFs as a transcription factor, binds with CRT/DRE to cis-activate of cold-induced gene expression (Chinnusamy et al., 2003). In the present study, the expression of two proteins (spot 15 and 16) belonging to the core-binding factor (CBF) family of transcription factors was increased by exposure to –30℃ stress. Whether these two proteins are involved in the expression of seven identified stress protein genes and how they produce a marked effect needs further investigation. Metabolism-related proteins Many proteins or enzymes have important effects on the cold-stress signal transduction pathway to result in changes of gene expression and metabolism (Cook et al., 2004). Under cold stress, most of the metabolism-related proteins or enzymes identified have proved that they had an important role for enhancing cold resistance during primary or secondary metabolism. Furthermore, soluble sugar and osmotic adjustment compound also have important effects on cold resistance. Under drought, low temperature, and salt stress, physiological functions of vegetative cell are changed, and especially dynamic balance of plants is destroyed. In adversity, the changes in carbon metabolism and amino acid metabolism are adaptations to the stress condition (Thomashow et al., 2001). Glycometabolism-related proteins Under –30℃ cold stress, the abundance of some proteins involved in glycometabolism changed; PEP carboxylase, 6-P glucose dehydrogenase, 3-P glyceraldehyde dehydrogenase, α-glucosidase, and ATP carboxylase were up-regulated, while starch synthase was down-regulated. Normally, PPP metabolic pathway would be en-hanced under adversity. 6-P glucose dehydrogenase is an important regulatory enzyme in PPP pathway. Lin reported that the activity of 6-P glucose dehydrogenase is increased under cold acclimation (Lin et al., 2005). It can increase the activity of superoxide dismutase (SOD) and peroxidase (POD), and significantly decrease the semilethal temperature (LT50) and malo-naldehyde. In our previous research, in field conditions the activities of SOD and POD increased following a decrease in temperature (Yin, 2005) which was in accordance with up-regulation of 6-P glucose dehy-drogenase. 3-P glyceraldehyde dehydrogenase is one of the key enzymes involved in glycolytic energy metabolism. It has an important function in the maint-enance of vital processes under adversity, such as anaerobic respiration, heat shock, and injury (Wang et al., 2005). Expression of 3-P glyceraldehyde dehydrogenase was up-regulated in response to salt stress, and during cold resistance it prevents sugar degradation and increases soluble sugar content. Furthermore, the chemical reaction 3-P glyceric acid 1, 3 diphosphoglyceric acid is a reversible reaction catalyzed by 3-P glyceraldehyde dehydrogenase. Under cold stress, the reaction would operate in the reverse direction. In the present study, PEP carboxylase was up-regulated, and malate dehydrogenase was down-regulated, in Dongnongdongmai 1 tillering nodes exposed to –30℃ cold stress. An association with cold stress has not been reported previously for either of these proteins. PEP carboxylase catalyzes the synthesis of oxaloacetate (OAA) from PEP and CO2 up-regulation of PEP carboxylase would decrease the 3-P glyceraldehyde content in the glycolytic pathway to reduce anaerobic respiration. In the tricarboxylic acid cycle, malic acid is dehydrogenized to OAA by malate -dehydrogenase, which was down-regulated would similarly reduce anaerobic respiration. Thus, the changes in expression of these two enzymes are likely to contribute to the greater cold resistance of Dongnongdongmai 1 by reducing respiratory energy consumption and maintaining a high soluble sugar content. Nucleic acid and amino acid metabolism-related proteins In our study, expression of 5, 10-methylene tetrahy-drofolate reductase was down-regulated under –30℃ cold stress. This indicated that a high content of methyltetrahydrofolic acid was involved in DNA synthesis or repair resulting from cold stress. Tetrahy-drofolic acid is an important coenzyme involved in the synthesis of purine, pyrimidine, glycine, and serine. It is the product of dihydrofolic acid reduced by dihydrofolate reductase. In the present study, under –30℃ cold stress, the expression of dihydrofolate reductase was up-regulated, which could increase the tetrahydrofolic acid content. Under such a condition, enough tryptophan, glycine, and pyrimidine would be synthesized to protect plants from desiccation and freezing injury through osmoregulation. Purine and pyrimidine might be utilized for DNA repair. Structural proteins and unidentified proteins In our study, under –30℃ cold stress, hydroxyproline-rich protein (spot 14) and glycine-rich protein (spot 3) were up-regulated. These groups of proteins are structural components of the cell wall that function to maintain elasticity and mechanical strength of the cell wall. Previous studies have reported that a change in hydroxyproline-rich protein content is positively correlated with cold acclimation in wheat (Sun et al., 2004), and glycine-rich proteins are up-regulated in response to abiotic stress (Rao et al., 2002; Gyrgyey et al., 1997) (these results are in accordance with our findings in the present study). Determination of five unidentified proteins (spot 9, 10, 21, 29, and 33) and understanding their relationship with the cold stress response will be a key task in the future research. Conclusions The protein contents in tillering nodes of winter wheat Dongnongdongmai 1 grown under cold stress (–30℃) and non-stressed (5℃) field conditions were analyzed by 2-DE and identified by MS. In the range of pH 4-7, the expression of 37 proteins showed significant differences in abundance (± more than 2-fold) in proteomic maps for the cold-stressed and non-stressed tillering nodes. All proteins exhibiting difference in abundance were identified using MALDI-TOF MS, and searches of the MSDB and NCBI databases were undertaken for protein identification and function prediction. Five sorts of protein were confirmed, containing: eight stress-related proteins associated with abiotic stress (22%), nine membrane lipid modification-related proteins and signaling molecules (24%), 13 metabolism-related proteins (35%), two cell wall-binding proteins (5%), and unclear pro-teins (14%). 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