Words of Modeling Wisdom

Stream Ecology (NR 280)
Topic 12 – Stream Metabolism
Metabolism, Carbon, and Energy Dynamics
Methods to Measure Stream Metabolism
Large-scale processes affecting Organic Matter
RECALL: Basis of using O2 or CO2
for measuring metabolism
Energy
Photosynthesis
π‘₯𝐢𝑂2 + π‘₯𝐻2 𝑂
π‘₯𝐢𝐻2 𝑂 + π‘₯𝑂2
Respiration
Energy
Energy and carbon
processing are linked
Energy
Photosynthesis
π‘₯π‘ͺ𝑂2 + π‘₯𝐻2 𝑂
π‘₯π‘ͺ𝐻2 𝑂 + π‘₯𝑂2
Respiration
Energy
Energy is embodied in the
carbohydrate β€œfuel” that is
food for the comsumer
Review and Extension:
What do we mean by β€œmetabolism”?
β€’ Energy acquisition – anabolic processes
– Greek: ana=upward , ballein=to throw
β€’ Energy use – catabolic processes
– Greek: kata=downward , ballein=to throw
What are the primary anabolic and
catabolic processes in streams?
β€’ What is the primary anabolic process?
– Photosynthesis
β€’ What are the primary catabolic processes?
– Respiration (aerobic)
– Fermentation (anaerobic)
Metabolic Frameworks for Streams
β€’ Organic matter and energy budgets
β€’ Methods to measure stream metabolism
– Litter bag experiments
– Bottle/Chamber oxygen measurements
– Isotopic methods
– Whole-stream metabolism
β€’ The P/R ratio
An important historical connection
Energy vs Carbon Budgets
β€’ Organic matter is held together by various
forms of C bonds
β€’ Energy is released when these bonds are
broken (e.g., burning wood)
β€’ Energy release can be used a β€œcommon
currency” to compare C fluxes in ecosystems
β€’ Allows comparison to other important energy
fluxes, most notably sunlight input
Carbon budget
for beaverimpacted stream
Naiman et al. (1986)
Energy (vs C)
Budgets in
Streams
Computed by wet dichromate digestion
and calorimetric relationships of O2
consumption during Cr3+ production from
the reaction of org-C with dichromate.
Fisher and Likens (1973)
Energy (OM) budget for Bear Brook, NH
Fisher and Likens (1973)
With this framework, how could we go
about measuring metabolism?
Energy
Photosynthesis
π‘₯𝐢𝑂2 + π‘₯𝐻2 𝑂
π‘₯𝐢𝐻2 𝑂 + π‘₯𝑂2
Respiration
Energy
Possible approaches to estimate
metabolism
β€’ Gross disappearance of CH2O
– Works well in some cases, e.g. litter bags
– Not easy to measure accurately in whole streams
β€’ Net consumption/production of CO2
– Often used in terrestrial studies where measuring CO2 in air is
easy
– Less often used in aquatic studies where measuring CO2 in
water is more laborious
– Isotope studies; radioactive and stable
β€’ Net consumption/production of O2
– Easy and accurate to measure with DO probes
– Can be directly related to C production/consumption
The Litter Bag Study
Gross Disappearance of OM
Litter
π‘₯𝐢𝑂2 + π‘₯𝐻2 𝑂
π‘₯𝐢𝐻2 𝑂 + π‘₯𝑂2
Respiration
Energy
Over time the mass lost from the litter (CH2O) is followed.
Litter bag studies
Litter bags deployed (R. Gomez, MIRAGE)
Mark Harmon,
HJ Andrews LTER
http://research.eeescience.utoledo.edu/lees
Effect of lignin:nitrogen on
decomposition rate (k)
Isotopic Tracer Methods
Incorporation of 14C or 13C into biomass
Energy
Photosynthesis
π‘₯13𝐢𝑂2 + π‘₯𝐻2 𝑂
π‘₯13𝐢𝐻2 𝑂 + π‘₯𝑂2
Either 14C (radioactive) or 13C (stable) can be used.
Mass Spectrometry
http://INSTAAR.colorado.edu
http://SERC.carleton.edu
http://watercenter.unl.edu
Change in DO Methods
Production of O2 implies fixation of C
Energy
Photosynthesis
π‘₯𝐢𝑂2 + π‘₯𝐻2 𝑂
π‘₯𝐢𝐻2 𝑂 + π‘₯𝑂2
Respiration
Energy
Sensitive probes are now available that can measure DO
continuously at low levels and save the data in loggers.
Conversions between O2, CO2, and energy
Note: The stoichiometry is not 1:1 because not everything is
glucose. Many compounds (e.g. fats) have a different (higher)
C:O ratio and so it takes more O2 to liberate all of C.
π‘€π‘ŠπΆ
βˆ†πΆπ‘‚2 π‘Žπ‘  𝐢 = βˆ†π‘‚2 βˆ— 𝑅𝑄 βˆ—
π‘€π‘Šπ‘‚2
Note: Dissolved oxygen (DO) is usually measured in ppm
or mg O2/L and so carbon dioxide ends up in mg C/L.
Ξ” = change in either CO2 or O2
RQ = respiratory quotient
Moles of CO2 released per mole O2 consumed
Suggested value = 0.85
Note: photosynthetic quotient would be 1.2
MW = molecular weight of C or O2
YSI ROX data sonde
Fluorescent quenching to measure DO
Thermo Scientific RDO Pro Sensor
Background on measuring metabolism
by the change in DO methods
𝑁𝑃𝑃 = 𝐺𝑃𝑃 βˆ’ 𝐢𝑅
or
𝑁𝑃𝑃 = 𝐺𝑃𝑃 + (βˆ’πΆπ‘…)
Note that in this formulation CR is a positive number subtracted from
GPP. Some people prefer CR to be a negative number (indicating
consumption) as in the second equation. Either formula is correct;
you just have to meticulously keep the signs straight.
β€œLight” bottle = NPP
β€œDark” bottle = CR only
Light bottle + Dark bottle = GPP
Be careful of sign!!
Whole-Stream Metabolism
Fin
Daytime
FR
Night time
FR
[DO]
Stream Reach
[DO]
Stream Reach
Psyn
βˆ†[𝐷𝑂]π·π‘Žπ‘¦
=
βˆ†π‘‘
𝑃𝑠𝑦𝑛
R
R
(𝐹𝑖 ) + 𝑃𝑠𝑦𝑛 βˆ’ 𝑅
𝑖
βˆ†[𝐷𝑂]π·π‘Žπ‘¦
=
βˆ’
βˆ†π‘‘
𝑃𝑠𝑦𝑛 =
Fout Fin
(𝐹𝑖 ) + 𝑅
𝑖
βˆ†[𝐷𝑂]π·π‘Žπ‘¦
βˆ†[𝐷𝑂]π‘π‘–π‘”β„Žπ‘‘
βˆ’
βˆ†π‘‘
βˆ†π‘‘
βˆ†[𝐷𝑂]π‘π‘–π‘”β„Žπ‘‘
=
βˆ†π‘‘
𝑅=
(𝐹𝑖 ) βˆ’
𝑖
(𝐹𝑖 ) βˆ’ 𝑅
𝑖
βˆ†[𝐷𝑂]π‘π‘–π‘”β„Žπ‘‘
βˆ†π‘‘
NOTE: Sum of Fi ~ 0
Ξ”DO Ξ± Ξ”CO2
Ξ”DOnight < 0
Fout
NEP in three
stream types
Mulholland et al. (2001)
Daily GPP and CR
Walker Branch, TN
Metabolism as a function of key
environmental variables
Mulholland et al.
(2001)
The P/R Concept
Cummins (1974)
Longitudinal
patterns in
stream
metabolism
Regional patterns in P/R
Webster and Meyers (1997)
Carbon and energy sources to stream ecosystems
The River Continuum Concept
β€’
Detritus is continually carried
downstream and processed along the
way.
β€’
CPOM becomes FPOM and FPOM
becomes finer and more recalcitrant
β€’
Different food and habitat types
create opportunities for different
species.
β€’
Community structure changes in
predictable ways associated with the
organic matter present.
β€’
The system P/R ratios shift in a
predictable pattern.
β€’
Applicable to undisturbed, canopydominated, temperate, forested
streams in the eastern US.
Extra Slides
Recommended Further Reading
Special Issue
On
Stream Organic Matter Budgets
1997
Jack Webster and Judy Meyer
Calculating WSM