Supplementary TABLE1
165 differentially expressed genes in both wild populations relative to one or more weedy populations
EST ID#
Ara_hits
Brief functional description
QHA10I23.yg.ab1
no_hits_found
QHA11F24.yg.ab1
no_hits_found
QHA11L02.yg.ab1
At5g02380
metallothionein 2b
QHA12E07.yg.ab1
no_hits_found
QHA12O20.yg.ab1
no_hits_found
QHA14C04.yg.ab1
no_hits_found
QHA14P24.yg.ab1
At2g33830
auxin-regulated protein
QHA16C07.yg.ab1
At4g11650
osmotin-like protein (OSM34)
QHA17I10.yg.ab1
At4g21960
peroxidase, putative
QHA18A23.yg.ab1
no_hits_found
QHA19P03.yg.ab1
At3g51030
thioredoxin H-type 1 (TRX-H-1)
QHA20C23.yg.ab1
At1g20440
dehydrin (COR47)
QHA20H10.yg.ab1
At5g59320
lipid transfer protein 3 (LTP 3)
QHA8E05.yg.ab1
no_hits_found
QHA8E07.yg.ab1
no_hits_found
QHA8E23.yg.ab1
At1g76180
dehydrin -related
QHB10K08.yg.ab1
At3g17210
expressed protein
QHB11H07.yg.ab1
At4g30950
omega-6 fatty acid desaturase, chloroplast (FAD6) (fadC) (delta-12 desaturase)
QHB11I13.yg.ab1
At4g21990
5'-adenylylsulfate reductase (APR3)
QHB12I01.yg.ab1
At3g28050
nodulin MtN21 family protein
QHB12P07.yg.ab1
no_hits_found
QHB13M17.yg.ab1
At5g56030
heat shock protein 81-2 (HSP81-2)
QHB13P01.yg.ab1
At4g38040
Exostosin family
QHB18M23.yg.ab1
At2g02450
No apical meristem (NAM) protein family
QHB19O09.yg.ab1
At1g78510
geranyl diphosphate synthase (GPPS)(dimethylallyltransferase), putative
QHB1h05.yg.ab1
At1g75080
expressed protein
QHB20C10.yg.ab1
At3g09830
protein kinase, putative
QHB21B24.yg.ab1
At4g12130
expressed protein
QHB23A11.yg.ab1
no_hits_found
QHB27I17.yg.ab1
At5g59250
sugar transporter family
QHB27L19.yg.ab1
At1g28330
dormancy-associated protein -related
QHB31E20.yg.ab1
no_hits_found
QHB34B24.yg.ab1
no_hits_found
QHB34C08.yg.ab1
At5g21222
protein kinase family
QHB34C17.yg.ab1
At3g48280
cytochrome P450 71A25
QHB34L10.yg.ab1
At1g20630
catalase 1
QHB36O22.yg.ab1
At5g51260
acid phosphatase
QHB3g08.yg.ab1
no_hits_found
QHB41M10.yg.ab1
At4g30960
CBL-interacting protein kinase 6
QHB5B05.yg.ab1
At3g09980
expressed protein
QHB9E01.yg.ab1
At3g22120
QHC3h09.yg.ab1
protease inhibitor/seed storage/lipid transfer protein (LTP) family
no_hits_found
QHC4g04.yg.ab1
At3g26740
light regulated protein -related
QHE12K16.yg.ab1
At4g02920
expressed protein
QHE12P12.yg.ab1
QHE12P20.yg.ab1
no_hits_found
At1g74470
geranylgeranyl reductase
QHE16B05.yg.ab1
no_hits_found
QHE16E14.yg.ab1
no_hits_found
QHE17A09.yg.ab1
no_hits_found
QHE1a04.yg.ab1
At5g02140
QHE1d06.yg.ab1
thaumatin-like protein, putative
no_hits_found
QHE1e12.yg.ab1
At1g71880
sucrose transport protein
QHE1f07.yg.ab1
At1g43710
histidine decarboxylase -related
QHE20F20.yg.ab1
At5g23150
PWWP domain protein
QHE20I12.yg.ab1
At2g05070
light-harvesting chlorophyll a/b binding protein
QHE26C09.yg.ab1
At2g36830
major intrinsic protein (MIP) family]
QHE26I22.yg.ab1
no_hits_found
QHE27M04.yg.ab1
no_hits_found
QHE29L11.yg.ab1
At3g04120
QHE2h08.yg.ab1
QHE30J18.yg.ab1
glyceraldehyde-3-phosphate dehydrogenase C subunit (GapC)
no_hits_found
At2g45910
protein kinase family [ F4I18.11 NP_182115.2 30690163 CDS forward ]
QHE3d04.yg.ab1
no_hits_found
QHE5O02.yg.ab1
no_hits_found
QHE9M14.yg.ab1
no_hits_found
QHE9O24.yg.ab1
At5g37820
major intrinsic protein (MIP) family
QHF12E13.yg.ab1
At3g53260
phenylalanine ammonia-lyase (PAL2)
QHF1g12.yg.ab1
At1g80930
eukaryotic initiation factor 4 (eIF4) family protein
QHF4g09.yg.ab1
no_hits_found
QHF9B21.yg.ab1
At5g62680
peptide transporter
QHG12O20.yg.ab1
no_hits_found
QHG17C01.yg.ab1
no_hits_found
QHG17D10.yg.ab1
At1g05010
1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase) (ethylene-forming enzyme) (EFE)
QHG17I02.yg.ab1
no_hits_found
QHG1e02.yg.ab1
no_hits_found
QHG5I24.yg.ab1
At2g21660
QHG7I09.yg.ab1
glycine-rich RNA-binding protein (AtGRP7)
no_hits_found
QHG7P13.yg.ab1
At5g43060
cysteine proteinase RD21A
QHG9D09.yg.ab1
At4g32940
gamma-VPE (vacuolar processing enzyme)
QHG9H16.yg.ab1
At3g30775
osmotic stress-induced proline dehydrogenase (pro1)
QHH5D23.yg.ab1
QHI11E12.yg.ab1
QHI11F24.yg.ab1
no_hits_found
At3g12630
expressed protein
no_hits_found
QHI11K12.yg.ab1
At1g17030
expressed protein
QHI11N07.yg.ab1
At5g03860
malate synthase, putative
QHI15E11.yg.ab1
At4g29120
expressed protein
QHI21I06.yg.ab1
no_hits_found
QHI21K21.yg.ab1
At4g25620
proline-rich protein family
QHI23L24.yg.ab1
At3g02470
S-adenosylmethionine decarboxylase
QHI7N03.yg.ab1
At5g59300
ubiquitin-conjugating enzyme 7 (UBC7)
QHJ16H14.yg.ab1
no_hits_found
QHJ18D20.yg.ab1
no_hits_found
QHJ8N13.yg.ab1
no_hits_found
QHJ9L09.yg.ab1
At2g01080
expressed protein
QHL10B02.yg.ab1
At3g16240
delta tonoplast integral protein (delta-TIP)
QHL10L02.yg.ab1
At2g16850
putative plasma membrane intrinsic protein
QHL11K09.yg.ab1
At2g45180
protease inhibitor/seed storage/lipid transfer protein (LTP) family
QHL12L20.yg.ab1
At5g55190
GTP-binding protein atran3, putative
QHL13O20.yg.ab1
At4g04640
ATP synthase gamma chain 1, chloroplast (H(+)-transporting two-sector ATPase
QHL15H22.yg.ab1
At2g15970
stress-regulated protein SAP1 [Xerophyta viscosa]
QHL16D19.yg.ab1
At3g12580
heat shock protein hsp70
QHL17H05.yg.ab1
At1g06680
photosystem II oxygen-evolving complex 23 (OEC23)
QHL17H12.yg.ab1
At4g33410
expressed protein
QHL18E09.yg.ab1
At4g23400
major intrinsic protein (MIP) family
QHL18K18.yg.ab1
At5g56360
Calmodulin-binding protein
QHL19K02.yg.ab1
At4g33950
protein kinase, putative
QHL1A16.yg.ab1
At4g00430
transmembrane protein (MIP family)
QHL2A20.yg.ab1
At1g29150
26S proteasome regulatory subunit (RPN6), putative
QHL2H09.yg.ab1
At3g63410
chloroplast inner envelope membrane protein, putative
QHL3P14.yg.ab1
no_hits_found
QHL5E01.yg.ab1
no_hits_found
QHL5L03.yg.ab1
At1g77120
alcohol dehydrogenase (EC 1.1.1.1)
QHL7O22.yg.ab1
At3g02230
reversibly glycosylated polypeptide-1
QHL8C05.yg.ab1
At3g12610
DNA-damage-repair/toleration protein, putative (DRT100)
QHN10E13.yg.ab1
At4g16190
cysteine proteinase
QHN10H11.yg.ab1
At3g47950
ATPase, plasma membrane-type (proton pump), putative
QHN11A06.yg.ab1
At2g38540
nonspecific lipid transfer protein 1 (LTP 1)
QHN11C12.yg.ab1
At5g14040
mitochondrial phosphate transporter
QHN11E23.yg.ab1
At1g22710
sucrose transporter SUC2 (sucrose-proton symporter)
QHN12H17.yg.ab1
At3g22840
early light-induced protein
QHN13F21.yg.ab1
At1g21065
expressed protein
QHN14B11.yg.ab1
lipid transfer protein SDi-9, drought-induced - common sunflower
QHN15N12.yg.ab1
At1g48370
expressed protein
QHN16B16.yg.ab1
At3g45140
lipoxygenase (LOX2)
QHN16O01.yg.ab1
At1g09740
ER6 protein -related
QHN17E20.yg.ab1
At1g55020
probable lipoxygenase (EC 1.13.11.12) CPRD46, drought-inducible - cowpea
QHN17I20.yg.ab1
At4g02380
late embryogenesis abundant protein family
QHN17P23.yg.ab1
At5g47530
auxin-induced protein, putative
QHN18P03.yg.ab1
At1g01620
plasma membrane intrinsic protein 1c
QHN19D17.yg.ab1
At1g19910
H+-pumping ATPase 16 kDa proteolipid, vacuolar (avap2)
QHN19I09.yg.ab1
At5g10230
annexin -related protein
QHN19I15.yg.ab1
no_hits_found
QHN19J12.yg.ab1
At2g39780
S-like ribonuclease RNS2
QHN19O06.yg.ab1
At4g35180
amino acid transporter family
QHN1K05.yg.ab1
At2g10940
protease inhibitor/seed storage/lipid transfer protein (LTP) family
QHN20N11.yg.ab1
At5g03340
transitional endoplasmic reticulum ATPase -related
QHN21M08.yg.ab1
At5g14610
DEAD box RNA helicase, putative
QHN22J20.yg.ab1
At4g27960
ubiquitin-conjugating enzyme 9 (UBC9)
QHN23M12.yg.ab1
At3g03620
MATE efflux protein family
QHN23P02.yg.ab1
At1g72180
leucine-rich repeat transmembrane protein kinase, putative]
QHN24F23.yg.ab1
NP24 protein precursor (Pathogenesis-related protein PR P23) (Salt-induced protein)
QHN24J03.yg.ab1
miraculin homolog, root-knot nematode-induced - tomato
QHN24J09.yg.ab1
hairy root 4 [Nicotiana tabacum]
QHN24L21.yg.ab1
probable cell wall-plasma membrane linker protein PRP precursor - rape
QHN24N01.yg.ab1
root-specific protein RCc3 - rice
QHN24O05.yg.ab1
protein kinase MMK4 (EC 2.7.1.-), cold- and drought-induced - alfalfa
QHN24P03.yg.ab1
ESTs gb|R64994, gb|AI994832, gb|Z47674 come from this gene. [Arabidopsis thaliana]
QHN2A20.yg.ab1
At4g39090
cysteine proteinase RD19A
QHN2C12.yg.ab1
At1g07650
leucine-rich repeat transmembrane protein kinase, putative [
QHN2E10.yg.ab1
At3g14930
uroporphyrinogen decarboxylase (UPD)
QHN2H12.yg.ab1
At1g16180
expressed protein
QHN2N03.yg.ab1
At5g48230
acetyl-CoA C-acetyltransferase (acetoacetyl-coenzyme A thiolase)
QHN2P06.yg.ab1
At4g24220
expressed protein
QHN3G08.yg.ab1
At5g66400
dehydrin RAB18-related protein
QHN3H02.yg.ab1
At1g64720
membrane related protein CP5 -related
QHN3K19.yg.ab1
At3g06170
expressed protein
QHN5A13.yg.ab1
At3g21180
potential calcium-transporting ATPase 9
QHN6B23.yg.ab1
At3g59140
ABC transporter family protein
QHN6F16.yg.ab1
At5g20650
expressed protein
QHN7D11.yg.ab1
At1g30510
ferredoxin--NADP(+) reductase (adrenodoxin reductase)
QHN7E20.yg.ab1
no_hits_found
QHN7K16.yg.ab1
At4g27400
expressed protein
QHN8F11.yg.ab1
At5g43010
26S proteasome AAA-ATPase subunit RPT4a
QHN8G11.yg.ab1
At4g11650
osmotin-like protein, Pathogenesis-related protein in H.annuus
QHN8N18.yg.ab1
QHN9G17.yg.ab1
no_hits_found
At5g35160
endomembrane protein 70, putative
Supplementary TABLE 2
Primers used for Q-PCR
EST Name
Forward primer
Reverse primer
Product length
QHN14D03
TTGTGGACGGATTCAATGTG
TGTACACGGTGCAAGGGTTA
147 bp
QHF6K23
ATTGTTCGCCGTTGATTCTC
TGGGGCTATGTAGCCGTAAG
167 bp
QHA14C04
GCGTCAAGTTGAGACAAGAGC
ATCACGGTGGAATGAAGAGG
152 bp
QHG18P13
ATTCTCGTGTGGCGAAAAAT
GGAAACACCCAACCGTAAAA
163 bp
QHA16C07
CTTCTGGTGGGTGCCATAAC
CACCAGGGCATGTAAATGTG
168 bp
QHE6N16
CTATCGATGCCCAAGAGTCC
CAGTGGGAGATTTGGTGGTT
172 bp
QHE1e12
AAACATCATATGCGGGAATCA
CGGCGTTAATAAGTGGCCTA
185 bp
QHN2P06
AGGTGTTGGCTGAGCAATTC
ATGCTGCAACCTCTTCCAGT
159 bp
QHL5L13
TCCTTCGGTTGTCGAAAAGT
ATGCAACGAAGACCTTCACC
129 bp
actin
CTCGGGGTCTACTGTGGAGA
ATCAGCAATACCCGGAAACA
241 bp
ribosomal protein
CGGCATGAAGAAGAAAGGAG
TATCAGCTCCAGCACACGAC
221 bp