560 PART FIVE (5) Histotehnology and Histopathology Clinical Laboratory Diagnosis For General Laboratory Scientists Histotechnology and Histology By Kourosh Teymourian, CLS 561 Contents Pages Chapter One (1) 1. 2. 3. 4. General Concepts 560 Instrumentation in Histopathology today 561 Safety in Histotechnology 565 Collection and reception of specimen and specimen process in front end aspect569 Chapter Two (2) 1. 2. 3. 4. 5. 6. 7. 560 Fixation and fixatives used in Histotechnology Application of microwave and tissue processing Microscopy Staining principles Stains Tissue staining Hematoxylun and Eosin 571 571 576 581 583 584 586 587 562 Chapter Three (3) 1. 2. 3. 4. 5. 589 Staining of mucins Staining of connective tissue Staining of pigments Bone processing and staining Amyloid substance staining 589 591 599 608 614 Chapter Four (4) 1. 2. 3. 4. 5. 6. 616 Histopathology techniques in neurology (staining properties) Neuroendocrine staining and related stains Routine immunohistologic stains in Histopathology Immunohistochemistry of Lymphomas Immunohistochemistry of Breast pathology Histochemistry by enzyme applications 616 620 624 630 634 637 References 641 Normal Values 648 Chapter One (1) General Concepts H istotechnology is a branch of medical science particularly surgical pathology that deals with preparation, processing and staining of tissues for the tissue evaluation and interpretation of the diseased tissue(s) and organs involve in tissue pathology. The result is a tissue slide or film that will be studied microscopically or in some cases by automated tissue sorter and result will be registered by the pathologist or his assistant/designate. Pathology is the science of studying the disease process: it is divided into two main branches, 1) Clinical pathology which deals with detection of disease by means of diagnostic reagents, antisera and other chemical and serological means, this is under Canadian or American laboratory medicine program, and second: 2) is anatomical or surgical pathology which deals with tissues (histology and histopathology), cells in the fluids (such as cytology and cytopathology) and processes. These biopsied or autopsied tissue sections are processed to identify and determine disease status and its implication on the patient. Another closely related branch of medical science under surgical pathology is the cytotechnology and cytology (cytpopathology): a division that uses secretion and body fluid cytology to detect 561 and study disease marker in the cells of the body fluids and the cells’ exfoliated layers to detect cancerous tissues or other diseases. Histology is the study of normal tissues so that by means of histotechnology and its application we can prepare tissue slides to interpret the tissue status under study by the pathologist. It is essential for the laboratory scientists or pathology assistants/histotechnologist/technician to have thorough knowledge of normal tissues histology and the principles of tissue processing and staining. In this connection histopathology is the study of disease and affected tissues by mean of tissue sections prepared by histotechnologic applications. The surgeon or the physician may send tissues/organ(s) incised or excised along with tissue biopsies, autopsies and fine needle aspirations (biopsies) to surgical pathology department to diagnose and determine the cause of tissue damage or illness by tissue microscopy evaluation. Histotechnology (& histology) and its application is the domain of histotechnologist. This branch of medicine is the concern of this section/part five of this textbook. Quality Management (QM) and Quality Assessment/Assurance (QA) similar to other departments in laboratory medicine department need training of staff, medical laboratory team and other relevant personnel. Quality management embraces aspects such as Quality Assurance (assessment) system and scheme, which is the assessment process and monitoring quality control and assurance processes. Quality Control although are parts of all clinical laboratory departments it is not excluded in surgical pathology lab(s) as it maintains Standard Operation Procedure (SOP)/(Kennedy A et al.). Quality assurance process should include standard preparation of solutions and stains. Special stain preparation for immunohistochemistry, chemical preparation, turnaround time for routine and special stains, such as hematoxylin, eosin and Carmine’s etc must follow the assessment and laboratory Quality Assurance expectations. Staining procedures and chemical preparations for making the required staining solutions play a crucial role in final interpretation of the stained tissue section of the slide and must be considered as a Quality Assurance tool. Still for a better Quality Assessment/Assurance proper functioning and maintenance of tissue processors, TissueTek® systems and routine inspections of instruments and equipment maintenance are a must and should follow according to the standards and guidelines of CLSI (Clinical and Laboratory Standard Institute) and CAP or CRCP [American college of pathologists and Canadian College of Pathologists]. Quality Assurance scheme for stain preparation and quality may be done by checking the archival section in the department or participating in an external quality control scheme/program/audit or using the schedules of ISO 9000 international Quality Control standards. These are for establishing a better quality management system. In this regards CLSI (Clinical and Laboratory Standard Institute) previous NCCLS (National Committee on Laboratory Standards) can be a source of data acquisition for the quality management, and assurance purposes. Histotechnologists scientists/technologists and technicians must be accredited/member by/of CMLTO 562 (College of Medical Laboratory Technology of Ontario), CSMLS or OSMT (Canadian Society for Medical Laboratory Science & Ontario Society for Medical Technologists) or by other US regulatory bodies (ASCP, American College of Clinical Pathologists, and National Certification Agency/NCA & CNC)/ (Paget G E et al.). Instrumentation Histopathology Lab in (Kennedy A et al) Today histopathology laboratory is equipped with many sophisticated instruments and equipments such as TissueTek® embedding system(s), tissue processors, tissue sorter, computer attaché to the system equipment, microtome(s), and cryostat, microscopes ( & stereomicroscope) and even electronic microscope for research purposes, tissue floatation water-bath, slide warmer, paraffin wax trimmer, convection ovens and microwave heater. Although in large, in some laboratories, most of the processes are still done manually such as preparing solutions for stains, staining solution changes, reception of the specimen, processing of specimen, interpretation and reporting of results. The idea of a total automation in this part of clinical laboratory is not universally crystalized. The area of specimen reception uses skilled technicians to handle the primary aspect of correct reception and identification of the specimen and labeling of slides and the processing of tissues by a histotechnologist/assistant pathologist, still seems to be not fully automated and is done by these personnel. The interpretation of results which mandates a pathologist is still the same as before. However these processing lines in some advanced surgical pathology lab have fairly fulfilled this promise to some extends in the pathology departments. Instruments as tissue processors are of two kinds the one with old rotary system used before 1980s and the new type of tissue which is manufactured and utilized after 1980s: it is known as “fluid change systems”. In the rotary system or carousel type, the pumping fluid is done through each changing cycles for tissue-cassettes in each bucket/basket/chamber with pumping tubes/pipes supplied for each cycles and the basket rotates to reach the system pumps at different stages. Whereas in the fixed pumping fluid system (fluid exchange) handles and processes tissue cassettes in one single bucket/basket with all reagents pumped into that the same basket with exchanging fluids. In the latter system the fixing solutions, dehydrants, clearing agents and infiltrating medium are exchanged in the same basket, nevertheless in former system basket moves to different stages or stepping cycles to have the said processing solutions. The following figure (Fig. 1-1) is the new fluid exchange system type from KD-TS3D: KEDEE system®, automated tissue processor shown, other as technicon processor® by Technicon incorporation are also marketed in the US, Canada and elsewhere. 563 the tissue holding cassettes for embedding and a TissueTek system for wax dispensing. Fig. 1-1: Fluid exchange automatic tissue processor, KD-TS3D® courtesy of KEDEE systems. In fluid exchange system, once the fluid is in the system/chamber, penetration is aided by means of various methods such as vacuum-pressure, vacuum only or alternating cycles, etc. unique to the manufacturers. Once the samples are fed into the chamber the lid is airtight and process commences. At the last sequence which is the evacuation of paraffin wax from the chamber: the system must be rinsed with cleaning solution to avoid build ups of the paraffin wax which is incompatible with the fixing solution at the next run/stage. The processor is capable of alarming and alerting the staff of the situation which therefore may prevent the hanging and drying of the tissue blocks during a black-out or burnout. (A) (B) Next instrument is the TissueTek® paraffin dispenser or Embedder, which is a great help in embedding the tissues in paraffin wax or so. The technologist will embed the processed tissues for the next step in tissue processing and staining. Tissue is placed in the cassettes and then into the baskets for paraffin dispensing. The following figure (Fig.1-2) is an example of Fig. 1-2: (A) the different types of tissue cassettes used in tissue embedding, and (B) a Sakura TissueTek® wax dispensing system: courtesy of Rankin Biomedical Incorporation®. In this department (pathology) the next instrument candidate to mention will be 564 microtomes. Ultra-microtome uses in tissue processing, cutting and sectioning of tissue blocks in Scanning and Transmission Electron Micrograph/Microscope (SEM & TEM) and is a research tool this will not be any further cite here in this part of the textbook. Nonetheless different types of normal tissue blocks with different classes of microtomes for routine microtome cutting of tissue block, all will be covered in this part of instrumentation. The microtome divides into the following classes according to the ultrastructure and function of this instrument and is used for the purpose of tissue blocks embedded in the paraffin section and the paraffin section cutting will be done by these microtomes: 1. Rocking Microtome (Cambridge Rocking Microtome® is named for its simple lever action and is good for paraffin wax embedded and used in first cryostats. Block size and consistency matters in this type microtome) 2. Rotary Microtome (most popular, and is good for routine works. Flexible with tissue size and tissue hardness/tough consistency it is known as Minot microtome after the inventor). 3. Based sledge microtome. 4. Ultra-microtome (for SEM & TEM) 5. Sliding microtome and, 6. Rotary rocking microtome. I will explain shortly the most popular and flexible microtomes for routine works: the rotary microtome. This microtome is capable of coping with hard consistency tissue blocks and hard tissues and flexible with their sizes. It cuts at 3 mm with accuracy and precision. The electric type of this microtome is used to control the section-ribbon cutting. The blade of microtome that cuts the tissue paraffin sections is disposable ones and need no longer to do stropping and or strapping (and honing) for routine cutting with heavy duty blades, just like cryostats it has antiroll plate that prevent rolling of tissue ribbon section back on the knife or this is especially true with frozen sections on cryostat. The new blades and microtomes have magnetic blade that attach with the microtomes knife holder or chuck and cut accurately and precisely, the tissue sample in paraffin blocks will be held in the paraffin block chuck. Additionally, the blades are sharp to the extent that they can easily cut section to thickness of 2-4 μm from a tissue block. Figure 1-3 shows a new class of rotary microtome. Fig.1-3; shows a rotary microtome during operation, courtesy of Leica biosystem®. Microtomes are used for cutting tissue sections for determination and diagnosis of the diseases by histologic studies. Caution! When operating any microtomes caution must be exercised not to trap the operator’s finger(s) between the blade and the chuck this mishap can be disastrous and 565 may result into severing of the hand and digitals of the operator. The next instrument is the cryostat that has an important function in the surgical pathology lab and need a thorough understanding of its operation (Fig. 1-4, shows a cryostat microtome). Fig. 1-4: shows a cryostat microtome for frozen section and emergency/stat tissue section such as malignant tissue submission: Courtesy of Leica Inc®. This is used for frozen section where the emergency or urgent tissues are cut and prepared in sections and stained rapidly so that the result will be ready for critical cases in operating room (OR) or emergency room (ER). The cryostat tissue sections tissue while it’s frozen: it will be cut thinly to the aforementioned sizes for rapid, urgent diagnosis (on-table diagnoses): the tissues depending on their type require following temperatures by different methods: 1. Liquefied nitrogen (-190°C) 2. Isopentane cooled by liquid nitrogen (-150°C) 3. Carbon dioxide (Cardice) at (70°C) 4. Carbon dioxide gas (-70°C) and, 5. Aerosol spray (-50°C) The last pieces of equipment in the histology and histopathology lab (and cytology) is the new version of cytology cell sorters and processor such as T-2000- & T-5000® thinprep and thick prep processor for gynocologic and non-gynocologic cytology slide preparations, (for Papanicolaou/pap smears and other body fluids). Relevantly these cytology cell sorters usually are manufactured in such a way that are capable of distinguishing the prepared slides of different cytology and histology nature and normal cells, although cannot distinguish and identify the abnormalities. This cytopathology advancement has been cited here just for presentation and is not the concern of the histopathology works, cytology and cytotechnology is a separate specialty/discipline in laboratory medicine program (lab techs) as with clinical genetics, this current textbook is focused in general practice specialty in laboratory medicine program (generalist specialty). Although laboratory technician are trained for some aspects of cytotechnology and cytology, but, I escape this heading. Safety in histotechnology and histopathology lab (Kennedy A et al & Paget et al) 566 Safety is always a refresher topic in clinical and anatomical pathology, which need special attention while working in this section of laboratory. This is due to sensitivity of the job especially when we are dealing with cuts, lacerations, infections and or mutilation of parts or burn and explosion. When we are in the pathology laboratory all these mishaps may happen and need a full attention during work and practice. The PPE (personnel protective equipment) and other protective alternatives must be in place to reduce the chances of becoming ill or injured. In risk management anything which is unlabeled or unidentified such as jars, vials or bottles, solution containers should be separated and later disposed. Chemical inventory has its own requirement in which the chemical should be categorized according to the chemical reactivity, corrosives, explosives, acids, and bases must be stored in the chemical cabinets according to the height and weight of the vessels. The heaver solutions containers should be stored at the back row of the cabinet and the lighter ones at the front row in lower shelves. The management and classification of the chemicals should be applied for chemicals that need to be stored in such a way that reactive chemical should not be in storage with flammables and ignitable chemicals, acids must not be stored with the bases and the other halogens. The glassware such as beakers and cylinders should be stores in the lower levels of the cabinet. And taller vessels must be placed at the back row and the smaller containers (e.g. as beakers, vials and flasks, pipettes) stores at the front row, it is advisable that when opening the dried picric acid jars, due to the explosive nature of this substance and stain at that stage (dried form beneath the lid). There might be explosion because of improper handling of the dried jar lid, exercise caution in handling of this chemical and mercuric chloride [including azide solution (containing nitrogen atoms): do not drain, or pour down the sink. There is possibility of exploding in the sink drainage tubing] in preparation of some stains formula can be dangerous due to their explosive nature and other incompatible chemicals. The chemical handling must be done in a fumehood in an isolated area of the department. The same precaution must be in place for other acids, alkalis and other class A, B, C, D (division 1 & 2) E and F hazardous chemical and biological classifications (WHIMS). The same should be done and consulted with manufacturers’ MSDS (Material Safety Data Sheets) and WHIMS [Work Place Hazardous Information System (refer to Part 1, clinical chemistry and hematology part 2 of this textbook)]. The laboratory must have chemical hygiene plan and schedules to follow. Of the most toxic, corrosive and carcinogenic and teratogens used in pathology department some of a long list may be named as Dioxane: a dehydrating agent, hydrochloric and sulfuric acids used in dye’s formulary, and benzene and carbon tetrachloride (CCL4) as toxic and narcotic dehydrating and clearing respectively. Some advantages and disadvantages of several chemical used in pathology faculty will be further discussed under tissue processing section of chapter two part five/current part. Microtomes blades and knives should be placed with the edge down in the blade 567 holder, during waxing of the microtome’s knife care must be exercised not to chip the blade and injure you. In case of stropping and honing (strapping) the heavy duty blade caution must observed to prevent incising hand or inflict other injuries to the person performing the stropping although disposable blades are more popular now. As aforesaid, the microtome operation must be taken serious for possibility of trapping hand and fingers between the blade and tissue holder chucks (vide supra). Glassware although mostly are disposable and of the plastic ware types, and these are replaced for glassware nonetheless if in any circumstance glassware (with tendency to break) used it will be a source of tissue injuries to the operator. It is recommended to use plastic ware in all time if feasible. (Turgeon M L et al). During performance-lines of fixation, dehydration, clearing and staining (tissue processing) always it is a good practice to wear appropriate PPEs including goggles, masks to reduce exposure to toxic gases and fumes of the fixing and dehydrating and clearing agents such as formalin, alcohol and acetone, etc. Exposure to these toxic gases can be hazardous in the pathology setting and should be maximally harnessed by limiting exposure by utilizing a safer chemical. Some of the dangers lure in the pathology labs are irritants, corrosives, sensitizers, carcinogens, teratogens, toxicants, highly toxics, oxidizers and biohazards. During body and corporeal and arterial embalming at autopsy department care must be used to prevent cut or injuries to the technician/technologist or the pathologist for there are accident reports of infection and mortality due to careless and sloppy autopsy performance. Solution preparation for stain must be considered and radiation control by intuitions/intelligence must be in place to prevent mishaps and risky situations: it’s ideal to have a thought for a second time before performance of a risky procedure. It is also recommended when severing the bones for bone pathology to consider when big chunks of bone either biopsied or autopsied, be severed with appropriate tools and caution be taken due to toughness nature of the bone before fixing the desired sections and cutting. radiation emission sign and biohazard signs must be posted in all The blood, body tissues and body fluids areas (where biohazard & radioisotopes manipulation are engaged) and in radiation emitting areas, when staying in this area the personnel must wear radiation badges or dossier. The following signs are the radiation and biohazard signs for restricted areas (Fig. 1-5), isotopes are used in conjugation process to trace metabolic events in tissues. They can be conjugated with enzyme, antigens and antibodies to generate signal and detect proteins and other metabolites of interests in tissue sections. The clinical pathology and anatomical/surgical pathology labs must be restricted only to authorized personnel. The area must be periodically survey with a survey-meter/dossier or radiation detectors (GM tube/Gieger mulller tube/counter) and in cases of critical radiation threshold, radiation containment team must be summoned. 568 (A) (B) Fig. 1-5: (A) biohazard signs indicating presence of possible biological contamination, and (B) the radiation emission hazard, indicating danger of exposure to fast penetrating radiation energy such as radioisotopes. In these departments food, beverages and smoking is prohibited, hair should be tied at the back, chewing on pens are not allowed and hands must be off the face to prevent accidental contamination either from the live or fixed tissues, and the books and belonging related to the lab must be minimized. Care must be taken when severing or grinding, mincing and centrifuging to prevent aerosolization of materials from the tissue /fluid particles. HEPA (High Efficiency Particulate Air) filter in biological safety cabinet must be on and the sash half open during tissue manipulation: working with these materials must be performed under the safety hoods/safety cabinet and the section premise must be assisted with a proper ventilation system called HVAC (or Heat Ventilation with Air Conditioning) aside from hoods and safety cabinets. This is to clear and circulate the internal atmosphere and aeration of the lab space, the section must have negative air pressure to prevent escape of infectious particles from the entrances of the pathology section to outside, by the availability of the negative pressure inside as the air current flow inside once the entrances are open. Thus this prevents escapes of the air through the doors and air conditioning will be handled by internal ventilation inside the lab section just to prevent dissemination of infectious particles. Engineering controls of premise and ergonomics are important aspects to personnel’s states of health: these should be used maximally to help maintain the hazards associated with lack of these principles. To counter-intelligent the problem we should be prepared for any mishaps or accidents occurring in the lab space and act by training in the first-aid courses/programs. The spillage of the toxic and chemically and biologically hazardous substances must be contained by means of chemical and alkalis neutralizer kits and biological spill kits available on site respectively. Chemical disposal of hazardous substances must be handled efficiently and by a trained personnel and a 569 waste disposal management systems. Before disposal all contract with biological wastes and chemical wastes must be collected and disinfected on site through autoclaving and storing in an isolated segment of the lab along with container of chemical wastes and finally by removal by the external waste management systems contractors. Some substances can be washed and drained in the sink: i.e. detoxified formalin in prior, or acid and bases can be neutralized and subsequently disposed or drained in the sink. However all chemical must be stored and removed according to the OSHA/OHSA (occupational safety and health act/agency) and local regulatory bodies. Description of all chemicals safety issues is out of the scope of this text and for more information refer to the sole textbook references at the end of the part five (current part) and MSDS with WHMIS. Personnel must be acquainted with the location of safety blankets, showers and eye-fountains for the emergency burn, fire or eyes affliction due to chemical spillage and splashes. Working with cytospin and tissuecentrifuges or other type centrifuges must be done with lid closed and essentially not to use the break (this to slowing down its velocity). The nails and hairs must be short or as said tied at the back. The safety plan must be reviewed periodically and personnel awareness of the regulation must be trained at certain periods and these programs have to be documented to update the program schedules and the training contents. Incident report is essential for the prevention of the same occurring problem and has to be presented in a format or form that contains comprehensible information of the accident be reflected in that report. Report keeping and document maintenance is indispensable for further referral and compliance with government agencies and US department of health and human services and Health Canada. The following is the figure (Fig. 1-6) of cytospin assembly for smear preparation. (A) (B) Fig. 1-6: (A) schematic presentation of a cytospin, courtesy of springer-images®, and (B) the actual centrifugal bowl of cytospin 570 detached from the main centrifuge set and note the slides position in for absorbing materials from the centrifugation, courtesy of thermo-scientific®. Collection and reception of specimen and preparing for specimen process in front end aspect (Bancroft et al) The first point where the reception starts in pathology lab works is the receiving of the specimen after arrival at reception: the specimen should be either receives in jar, vials with proper amount of fixatives or it may be in the form of fine needle biopsy or touch print on the slide/smear with alcohol or other preservative/fixation aerosol sprayed on it so that it is fixed. The identifiers of the specimen must be checked as name of the patient, birthdate, address and the third: hospital or institution number including the ward it is originated (OR, ER and CCU or the mortuary etc.) with MRN (Medical Record Number) attached and written on the pathology Requisition Paper and on the bottle or jar or vial and other vessels where the specimen is fixed (as label) with sufficient amount of fixatives and have screw-capped. The labels may be computer generated with bar codes or manually written, the labels must be placed onto the requisition paper and the vials for further processing. The amount of fixatives must be 15-20 times of that specimen, and the container must be screw capped as mentioned. The sample collection and reception from operating room as surgical specimen will be in form of whole or part of an organ, or another specimen from regular minor surgeries in O.R (operating rooms) including biopsies. Or the specimen may be from nursing units as in pleural fluids or other fluids (rarely) and or originates from out-patient department (OPD): lastly these specimens may be referred from postmortem department (morgue). There are few formats that specimen arrives in the histology lab whether it is fixed with 10% solution of formalin in a clean non-breakable vessel, 2nd in form of wax block third as in unstained section on smear and lastly stained sections on slide. All specimen arrives in the pathology/histology department must be fixed with 10% formalin excepts for bacteriological, virological and toxicological specimen that should not be fixed, other specimens’ fixation must be as quick as possible after death or biopsy to prevent tissues putrefaction and decay and the specimen in the jar must have proper labeling which its info must match with the requisition. Forensic specimen for chain of custody must be sealed in every step to prevent tampering with it. And lastly for electronmicroscopy the specimen should be fixed rapidly with glutaraldehyde with phosphate buffer at PH 7.2 to 7.4. After reception and fixation and checking all criteria for proper reception, it must be given an accession number, name, date of fixation and type of tissue, physician name, diagnosis, patient’s location whether in the ward or OR (Operating Room) or ER (Emergency Room) must be indicated on the label and request paper along with request for the type of processing such as frozen section or routine processing. 571 Subsequent to all these it should be given accession number and the data should be entered into the accession log manully or electronically. All data must be entered in to the manual logs or computer terminal. Specimens that do not conform with the info (identifiers) written on the vessel’s label and request paper must be checked before discarding if the specimen is of critical and urgent nature/value therefore it must be consulted with the ward and persons in charge and come to the advice of supervisor. The non-urgent specimen should not be accepted at all due to discrepancy and must be discarded. Specimens that arrive at the weekend where regular personnel (day shifts) are not available must be left in a moistened cloth or gauze with normal saline/ NSS (normal saline solution) and left in fridge temperature until the regular shift starts, if the specimens are small enough. The specimen should never be frozen or left long at surrounding temperature or hangup to dry and shrink. It must be optimally and immediately be fixed, preserved and ready for processing. electrolytes and its pathology in clinical chemistry part one of the textbook) and thus results into hardening of these tissues. In connection to preparing for specimen and processing, stains and dyes must be filtered before staining is performed. Alcohol solutions/dips for dehydration must be changed on periodic schedule and acetone or other clearing agent must be changed and refreshed on certain timescale. Buckets for washing and rinsing of the stains and the slides must be changed as well at the end of every batch or run. If using tissue processors for processing maintenance is important this is consistent with washes/flushes with xylene followed by an alcohol rinse: this is usually done automatically. Toxic hydrocarbons generated in the air and tubing by the tissue processing in the tissue processor must be cleaned by carbonfilter(s) assembled/build-in to counter act the accumulation of these noxious substances and their vapors. Bone specimens must be severed and sawed and then decalcified after fixation. Calcium ions must be removed from tissues containing this ion. Example of these calcified tissue are atheroma tissues, bone (calcified), teeth and tissues that sustain damaged (necrotized) and are classified as epithelium and thyroid tissues, cardiac valves and kidneys, etc. These tissues harden and calcify due to resorption and deposition of calcium ions and other salts: calcium ions along with phosphates in tissues such as dystrophic calcification, metastatic calcification and calcinosis. This process is a quite complicated, however in short is due to imbalance of calcium ion in the tissues (refer to calcium ion as Fixation and fixatives used in Histotechnology (Bancroft et al) Chapter Two (2) F ixation comes before any other processing of tissues and in bone decalcification which all fixations come first. The purposes of fixation are to prevent the tissue from autolysis, putrefaction and decay for a better observation under the microscope, the preservation and hardening the tissue, solidifying the colloidal materials and a better visual or optical differentiation of structures. There are many ways of fixing a tissue section as examples we have heat, chemicals and microwaves treatment or for 572 some tissue fluids and secretions by means of alcohol and air. The most important substances that can be fixed and stained to screen for their tissue pathology are proteins, lipids (depending on like frozen sections), and carbohydrates that may be found in different combination in different tissues. These chemical substances come into combinational interplay so to create molecules of different shape, size and properties such as sphingomyelin, sphingolipids, lipoproteins or phospholipids, etc, fixing of these substances are crucial in histopathology: the most important substances in histopathology, however, are proteins from the histopathological aspect/perspective or point of view. Proteins are the main building blocks of all substances such as proteins, enzymes, glycoproteins, lipoproteins and proteoglycans, etc. Fixations have profound effect on the next stages of tissue processing as it may affect dehydration, clearing and staining. Fixation can affect lipid and this is almost always lost during tissue fixation, on-thecontrary, there are some treatments before fixation that can take place to preserve and save lipids somehow. Fixatives are divided into aldehydes (formaldehyde, glutaraldehyde, etc.), oxidizing agents (osmium tetroxide, potassium permanganate and potassium dichromate) and protein’s denaturing agents as alcohols and acetic acid. Also mercuric chloride, picric acid and heat and microwave are other substances and methods to fixing tissues. In microwave technology fixation of tissues can cause oscillation of biopolar molecules in interaction with microwaves. This idea will be extended under microwave fixation later. However, the interaction of chemical fixation with DNA and RNA requires heating to 65°C and 45°C respectively to uncoil these molecules for a better fixation and staining. Nevertheless it does not react under normal thermal condition (room temperature, etc.). Similar situation is observed with glutaraldehyde as well. In Carnoy’s solution, alcohols such as methanol and ethanol are used as fixatives. These alcohols can uncoil DNA and therefore preserve it. As said lipids usually are lost during fixation even by the use of glutaraldehyde, this fixative can fix phospholipids with binding to some definitive amino groups. Nonetheless formalin has been shown to fix unsaturated fatty acids: lipids may be examined with frozen sections. Carbohydrates fixation may accomplish as well with the use of alcoholic solutions and are recommended. Alcohol formaldehyde is better fixative for human skin tissue than neutral buffered formalin (NBF). At last, the use of fixatives-cocktail or mixture has some advantages and disadvantages in fixation of variety of tissue sections, such as glutaraldehyde-paraformaldehyde for electron microscopy or glutaraldehydeosmium tetroxide for the same purpose. These cocktails may produce artifacts in staining process and it is better to be used sequentially especially glutaraldehydeossium tetroxide. Fixatives may coagulate tissue (and proteins) to some extend however it may not affect the examination and tissue processing: it may have a none-coagulating property 573 or a coagulating property. The nonecoagulating fixatives cause a little distortion or breakage of the tissue called “soft fixation”, however, the coagulating one is capable of hardening the tissue and is breakable or fragile it is known as “hard fixation”. popular fixatives is 10% formalin which is cheap and easy to prepare, and is the best fixative for the nervous system, it does not cause so much hardening of the tissues. Also fixation with 10% formalin staining can be easily carried out, tissue block preserved by formalin does not require washing before processing along with others properties as it penetrates the tissue reasonably well and natural color of the tissue can be restored. There are a few disadvantages for 10% formalin (40% formaldehyde and NBF/Neutral Buffered Formalin) as it may cause dermatitis and asthma and as an irritant to the skin and nostrils. Old unbuffered formalin may cause dark brown pigment(s) due to buffered formalin in bloody tissues (artefacts). In addition the hematin with combination with formalin/paraformaldehyde may form dark pigments of Acid Formaldehyde Hematin (AFH) nature: spleen and liver and blood vessels (blood forming tissues) are the most likely candidates for this problem, it may be removed by saturated picric acid solution. This is an undesirable situation for tissue sections and can be troubleshot and prevented by buffering the fixative (formaldehyde). The most The chemical fixation as formaldehyde may have certain effects on staining that is these combination may act as mordant: this is when the tissue will look more brilliant due to action of dye and tissue in selective staining. In reception of the tissue and unlikeliness of fixation and if the tissue section is not fixed immediately cover the surface of the tissue precisely with gauze and moisten it with NSS and leave it in the fridge until attended. Fixative volume must be 10-20 times the size of the tissue/specimen. In this regard fixatives are toxic and once come in contact with skin or inhalation or swallowing it may irritate and damage tissues once this occur wash the skin with copious amount of water, and seek medical attention for the other routes as per se . Their vapor might be the source of toxicity and a well-ventilated room is essential as well. In this connection we can use biohazard cabinet and fumehood for biohazards and chemical hazard purposes respectively. Other fixatives such as mercuric chloride may bind to some amino acids residues in proteins to fix the tissues and it is used as a secondary fixative (post-fixation). Postfixation of mercuric chloride of ultrastructural preservation would be poor nevertheless use of trichrome staining works well in this regards many immuneperoxidase methods are satisfactory. As with Microwave fixation, it may produce poor staining due to under-heating the tissue or overheating (>65°C) may cause tissue distortion and vacuolation. Therefore an optimum temperature is ideal: this may be from 44-55°C. Poor quality sectioning is a cause of under-fixation with under-heating. In over-staining due to overheating the cell cytoplasm will be overstained and nuclei may be pyknotic. This utility of microwave in fixation process is a good tool in routine fixation and processing 574 with well tissue preservation and thus is adequate. The use of routine fixation with microwave give reasonably good result in many staining procedures or methods such as neuropathology with Bielschowsky, Bodian and Nissl methods or immunohistochemistry applications and enzyme histochemistry including several others. Microwave technology can be used in electron microscopy with osmium tetroxide fixative or with some other cocktail fixatives (vide supra). In this method post-fixation with microwave may produce a satisfactory result. In respects to the factors that may affect the fixation of tissue, we have hydrogen ion concentration, time and duration of fixation, penetration of the fixative into the tissue, osmolality of the surrounding and concentration of fixative and the temperature, all can be critical: in short, duration of fixation is critical when too lengthy fixation may result into overstaining and distortion while under fixation is the result of under-staining. The fixation’s effects of PH are the best shown in optimal tissue fixation between PH= 6-8. Outside range is detrimental to the tissue processing. Some procedures as detection of adrenaline and noreadrenaline mandates specific PH as PH=6.5 for chromaffin reaction. Other example for specific PH is the gastric mucosa preparation and optimal fixation that needs to be fixed at PH= 5.5. As for penetration factor, the tissue size is important: the thinness or the thickness must be considered for fixative penetration. It also matters that tissue packing and cellularity affects penetrations of the fixatives (as kidneys and pancreas), dehydrating agents, clearing and impregnating wax and even the stain. Example of the tissue size: large organs as uterus must be toast rack and spleen must be opened and sliced thinly. For brain tissue with thick grey matter: the neuroanatomical relationship must be maintained by preserving whole organ suspended in 15% NBF (normal buffered formalin) for 3 weeks to obtain a satisfactory fixative-tissue penetration In addition for osmolality the hypertonic or hypotonic solutions may rise to tissue shrinkage or swelling accordingly (hypoand hypertrophy respectively). Isotonic properties are likely optimal. Fixative concentration of 10% for formalin and 3% for glutaraldehyde may be ideal but it varies with PH of the vehicle. The last factor that affects the tissue fixation is the temperature during which the tissue is fixed. Room temperature is carried out for routine fixation for surgical pathology specimen however electron-microscopy (EM) may be fixed between 0-4°C with exception of some tissues under this kind of study: i.e. mast cells need room temperature. Also frozen sections mandates for emergency situation applies with freezing temperature (-20°C or lower). Other factor may be in need during tissue fixation and processing such as the use of detergents, substances added to the vehicle and changes in volume of the fixative solutions. During fixation of tissues we may use a primary and secondary (post-fixation) fixation with some fixatives may produce artifact as well such as pigments or precipitates with the formalin’s artefacts (vide supra): these precipitate have already been discussed. 575 Of some others artefacts, delocalization of artifact or the precipitates to other parts of tissue sections (spreading) is also likely, a good example for delocalization (false localization) is the effect of glycogen and enzymes to other part of the tissue section: (vide infra/enzyme section) these are called “streaming artefacts.” Fixatives as mentioned vary and are for different purposes, fixatives such as formaldehyde fixatives are good for routine purposes, and it can preserve almost most of the molecular species in the tissue sample with different intensities/concentrations. Carbohydrates, proteins and lipid may be fixed properly. The different formulas are used in formalin preparation to fix tissues. Examples are formal saline, alcohol formaldehyde, formal calcium, and NBF (neutral buffered formalin). Other kinds of formula exist for tissue fixation such as paraformaldehyde and phenol formaldehyde. Out of alcoholic formaldehyde, the Carnoy’s fixatives are the best for preservation of glycogen. Once the alcohol has been added to formaldehyde it increases the fixability character of the fixative solution for a better fixing. As the names of different mentioned formaldehyde solution indicate these are added with particular substances such as saline, alcohol, buffer, calcium or phenol etc., these augment the fixing abilities of solution and make them more specific in action (Bancroft et al). Picric acid solution have different formulary such as Bouin’s with glacial acetic acid added, or Gendre’s fluid with different percentage of formaldehyde and picric acid solution plus glacial acetic acid, also the last but not the least is Rossman’s fluid (most popular for carbohydrates) with picric acid saturated with alcohol and neutralized formalin. These are good by binding to histones and proteins and glycogen as well. The addition of picric acid solution to the formula adds and conveys a yellow color hue to the tissue section and may be removed by treatment of lithium carbonate or another acid dyes. Mercuric chloride fixation formularies consist of a few fluids such as Helly’s fluid with potassium dichromate and mercuric chloride, or Susa’s fluid added with trichlroacetic acid, dichromate and glacial acetic acid. The buffered formaldehyde sublimated contains mercuric acid sodium acetate and formaldehyde and lastly among the mercuric chloride formulas are Zenker’s fluid, with some potassium dichromate, formaldehyde and glacial acetic acid contents. Mercuric chloride fixing fluids utilizes in fetal brain anatomopathologic examination. It has poor penetrability and produce black pigmentations (except Susa’s) are its disadvantages: pigments can be removed by 0.05% iodine solution before staining (during deparaffinization). As in protein demonstration NBF and formaldehyde vapor can be used and for lipids, Baker’s formal calcium is used for phospholipids and for general lipid screening cryostat section (frozen sections) are adequate although in routine and in most cases lipids are lost during processing. Elfman’s fluid is good preservative for lipids in electron microscopic examination. It contains mercuric chloride and potassium dichromate. 576 For general purpose carbohydrates fixation and demonstration, Rossman’s fluid and or cold absolute alcohol are suitable. Immunohistochemistry and immunoenzymatic methods has the same principles that have been discussed in the clinical chemistry section part one, although the principles may apply to histopathology and histotechnology a little differently. Tissues are processed and enzyme or antigen/antibody tagged tissues will be studied under microscopes by fluorescence, or labeled or tagged enzymes-tissue with radioactive substance to trace required metabolic activity or substances or tagged with immunologic signal chemicals/molecules generating (e.g. immunoperoxidase, or other antigen/antibody conjugates labeled with enzymes or labeled isotopes) may be used to detect proteins, carbohydrates and lipids, such as antithyroid antibodies or antinuclear antibodies. Concerning immunohistochemistry fixation, fixation is used for few seconds with formaldehyde and tissue may be prepared by paraffin sections. As with enzyme histochemistry fixation in any form is not recommended: only each enzyme’s detection indicates its own characteristics: this should be considered. Therefore for general purposes we can use 4% formaldehyde or formal saline overnight and do frozen sections. Generally frozen sections and cryostats are ideal to study enzymes some may need to be fixed in acetone or formaldehyde. Scanning Electron Micrography (SEM) and Transmission Electron Micrography (TEM) are used for research purposes and is not cover in here part five, which advocated for routine light microscopy. Flowcytometry is used in histopathology department for determination and identification of peculiar substances. Organs as brain, renal biopsies, GIT (gastrointestinal tract), liver, eyes, lungs, heart and lymphoid tissues/ and nodules or laparoscopic specimen and other organs must be fixed and slide sections prepared for further study in paraffin blocks. For example eyes and liver may be fixed in buffered formaldehyde or kidney tissue sections (percutaneous) may be preserved in NBF for routine embedding. In regard to EM studies (electron-microscope) tissues may be fixed with glutaraldehyde. Buffered formaldehyde and NBF are routinely used for different organs fixation. Application of microwave and tissue processing (Leong et al, Shi et al & Bancroft et al) In 1991 Landmark discovered that antigens can be retrieve by utility of microwave, special stains can be introduced after tissues safely were fixed and sustain with no damaged subsequent to microwave treatment. This application practically do not break or damage bonds between molecules and safely delivers fixation to the tissue in which optimal staining can be obtained. The main operating scheme has a built-in magnetron which produces the microwaves inside the microwave oven. The waves are in pulsate manner with hot and colds characters. This disadvantage is remedied by carousel or rotor built onboard to counteract the pulsate waves of the oven to expose the specimen to constant heats. This method distributes heat and thus the wave equally to every section of the tissue and therefore fixation may take place. 577 Principles involved are the dipolar or any polar molecules in protein or other chemical with the same property once hit with these waves they (these molecules) can rotate to 180° with a force of 2.45 billion cycles, thus heating up the specimen. This heating up helps to fix the tissue with different components easily and fast. The advantages and uses of microwave technology in histotechnology include 1) low volume of specimen needed while in conventional fixation tissue volume is much more than the microwave technology, 2) short time of processing and fixation, 3) used in Masson Fontana method for silver staining of tissues with rapid fixation and processing these also facilitate silver impregnation, 4) demonstrates other components with other methods such as Periodic Acid Schiff (PAS) and Perl’s Prussian Blue (PPB), and 5) can be used for enzyme chemistry such as ACP and ALP (acid and alkaline phosphatase) and others. Some of the disadvantages are: the temperature should be adjusted so that to accommodate faster result. For getting a better result either the time must be lengthen or voltage/power be increased. In this volume of solution must remain constant. The maintenance includes periodic checks for the instrument, and some of the solutions are not usable after usage, e.g. Perl’s PB. There must be stirring the mixture to produce convection current, this is due to pulsate heating of the contents (vide supra). There is probability of precipitation of sliver in cases of too long standing in microwave of silver. At last, there might be some explosion if treated with some chemicals such as chromates and chromic acid. The applicability of the microwaves has been demonstrated by heating the striated muscle (roasted beef) sized and cut 2x2x2 cm 3 in 100% ethyl alcohol at 70°C: one section placed in microwave and other placed in common and conventional ovens over 5 minutes fixation. The beef in the microwave showed gray and all the way dry through its thickness while the one with ordinary oven show only surface grayness and the core was red and unfixed (J. D. Bancroft et al). The following picture (Fig. 2-1) shows microwaves treated fixation in a human tissue. Fig. 2-1: On the left (pictures: A, C and E) are formol fixed tissues, and on the right (pictures: B, D and F) are fixed with microwaves, note the clarity of tissues sections as corneous layers in subsequent pictures. In addition to the above advantages core biopsies/biopsies may be done with less than 30 minutes of operation of the microwave and tissue section smaller than 2 mm in cross section may be done less than one hour. This is much faster and better than any fixation in tissue processors. Antigen 578 retrieval can be done quickly by microwave processing and addition of citrate phosphate buffer to the tissues. This leads to unmasking of antigen in the tissues (Leong et al). Tissue Processing (Paget GE et al) Following fixation (this is antecedent to decalcification of bone tissue/slabs and the first step in all tissues processing), we have to dehydrate the tissue block that have been fixed this may be accomplished by using chemical agents to take out or extract the water molecules from the aqueous solution of fixed tissue. The dehydrating agents are 1) ethyl alcohol/ethanol (with concentration gradient 70-100%, which is the most popular and common tissue dehydrant: it shrinks the tissues and is miscible with water and replaces water entirely: this is somehow inexpensive dehydrating agent, 2) butyl alcohol, a slow dehydrant and miscible with paraffin but causes less shrinkage of tissues, 3) acetone, is a volatile and flammable dehydrant with strong odor, 4) methanol, may be a substitute for ethanol, 5) isopropyl alcohol, a good substitute for ethanol, may cause shrinkage and hardening of tissues section, celloidin is insoluble in isopropyl alcohol and cannot be used for this purpose. There are other dehydrating agent conventionally used in the past and are not used in histolab any longer these are 1) ethylene glycol-mono-ethyl-ether (Cellosolve); it is hygroscopic and no need of graded solution, 2) tetrahydrofuran; quickly evaporates and is a nontoxic agent, 3) dioxane (no longer in use in histopathology labs), it is toxic and causes tissue distortion. The factors involve in proper dehydration are: 1) the nature of dehydrant, 2) the fixative in use, 3) the number of the pieces of tissue suspended in the cassette, 4) the size and type of tissue (density), and 5) the volume and the amount of dehydrating solution. The inadequate fixation and dehydration ultimately results in insufficient clearing and wax impregnation. Therefore, it is a must to optimize all tissue processing from the time of fixation to dehydration, clearing and waximpregnation. To have a well stained tissue section the followings may be involved and controlled: the tissue section may have incomplete dehydration due to tissue thinness or thickness, the inadequate immersion into the dehydrating agent as timing schedule(s), or low volume dehydrating agent, next would be the size of tissue as too many pieces of tissue blocks may hinder the proper clearing and staining, also the erring in alcohol gradients (grades) may affect the clearing stages, and lastly the expiration of the strength of alcohol or dehydrating agents may result into improper staining. Next step in the tissue processing would be clearing there are several clearing agents used for this purpose, the purpose of clearing is to increase the brilliancy, clarity and augment the optical density and render tissue transparent. If the clearing is insufficient, it would ultimately affect the wax-impregnation and embedding or staining quality. The agents used for clearing include namely as: 1) xylene, this is the best and it is rapid and easily clears from the wax, it’s somehow a bit expensive, however it is flammable and mild irritant, 2) benzene, it is a rapid clearing agent with minimal tissue shrinkage however, it is carcinogenic (very toxic), flammable and 579 rapidly volatile, 3) toluene, is a rapid clearing agent, with quick elimination from wax, only alcohol must be used as dehydrating agent although the fumes are toxic and it is narcotic in nature, 4) chloroform as a clearing agent is good for large size tissue blocks, nonetheless it is toxic and is anesthetic naturally, it is hydroscopic as absorbs the air moistures, 5) methyl benzoate, it is a tolerant clearing agent and clear quickly however it is toxic, 6) cedar-wood oil, extremely tolerant clearing agent and does not extract aniline dye, but it is a slow agent and difficult to remove from paraffin-wax, and lastly; 7) carbon tetrachloride or known as (CCL 4 ). As for processing and clearing the tissue with xylene in spite of unavailability of xylene the other clearing agents mentioned may be utilized although there are other clearing agent called ”xylene substitutes” their example is as citrus extract, nonetheless these substitute are toxic with strong odor and have not been commonly adopted in histology due to their disadvantages overweigh their advantages (Kernan et al). In handling the clearing agents the histotechnologist must be vigilant of drawbacks of these substances and they should use more environmentally and physically friendly clearing agent to reduce their toxicities, they should avoid exposure of these substance to sun light, also handle these agent with mechanical instrument than with sole hands, they may use full PPEs at all time and keep all caps and lids of the reagent vessel tight and closed. For disposal of toxic chemicals consult MSDS and WHMIS, federal government of Canada and US have regulatory bylaws and commission for proper disposal of all toxic substances including histopathology chemical wastes, recycling may be used as a way of immediate disposal. Subsequent to dehydration and clearing we precede with infiltration and impregnation, in impregnation, some impregnation mediums impart strength to the tissue section these are in forms of wax so that in microtome cutting the tissue may have torque and proper consistency/texture to prevent tissue collapse during microtomy. The followings are the most common impregnating medium, 1) the most popular and common is the paraffin wax which available and cost effective, the temperature of the surrounding may dictates the type of paraffin wax some are considered soft wax at 45-50°C and others are hard wax are at 52-60°C. The best wax for temperate climates are between 54-58°C can stand this environmental temperature with good quality section cutting. 2) Combination of different wax such as beeswax, rubber, and polymers are being used in tissue processing which are hardeners of the wax. The fact is that addition of polymers waxes to the paraffinwax will give a uniform texture and a better ribbon sectioning of the tissue section 3) (undecalcified bone section make use of MMA/GMM impregnating agents/ refer to bone histopathology section further ahead in chapter three/vide infra). 4) There are others infiltrating and impregnating waxes such as carbowax and nitrocellulose which I will escaped explanation in here as the text is considered routine practice and the most common wax would be paraffin as cited. The decalcification of bone subsequent to fixation and processing will be considered as a part of tissue processing however I deal 580 with this section in chapter three (title bone processing and staining)(Bancroft et al). Specific tissue and body site for processing and staining may include spleen and lymph nodes (will be discussed in chapter four under heading of immunohistochemistry of query lymphomas), bone marrow, kidney, trans-bronchial, open lung biopsies and bronchial biopsies and nerve biopsies (this will be considered in neuropathology section of chapter four histopathologic techniques in neurology). As with bone marrow biopsies and aspirates, a smear is made from the aspirates and sent to hematology department for further processing as well the trefine portion is retained in the histology department and fixed either by B-5 or Zinker’s solution (Bouin’s fixatives/vide supra) and it should be mentioned prior to processing, it must be decalcified and then process either by paraffin section or plastic impregnation. Due to size of the bone and care must be taken to prevent overdecalcification. Check frequently [refer to bone section of chapter four (4)] As in kidney biopsies the purpose of the biopsies are either for kidney pathology or kidney transplantation either in form of core biopsies or percutaneous sampling as FNAB (fine needle aspiration biopsy). In either cases fix the kidneys in formalin as other tissues and do paraffin waxing as for other tissues, for electron microscopies glutaraldehyde may be used: refer to the fixation at chapter two (2), for cryostat sections the Sudan red stain may be used. Concerning the open lung and transbronchial biopsies the need for rapid processing in cases of pneumonia and cancer warrants sampling and rapid processing especially in HIV patients. This is an urgent or priority, stat specimen must be acted on appropriately. For urgent tissue frozen sectioning is ideal and aspirates may be processed according to the need as in smear for cytology or imprints: touch imprints and crush smear are made from specimen obtained by transbronchial endoscopy. This is done by applying a bit of tissues obtained by this procedure and crushed in between the slide and fixed by formalin fixative and proceeds accordingly to the standard of practice. Nerve biopsies will be tangibly covered in chapter four (4). The last section in tissue processing is microtomy and tissue mounting onto slides. The microtomy is done by microtome: once the paraffin wax have been blocked out by TissueTek® processor and ready, we place the paraffin blocks made by either tissue processor or manual processing (TissueTek), the paraffin block will be placed in the microtome chucks and then by considering all precautions the technologist attempts to cut tissue ribbon sections. This is done by vertical rise and fall of the microtome blade perpendicular to tissue paraffin block thus a tissue ribbon may be obtained/formed. Subsequently the water bath is used to fish-out the floating tissues that has been selected form the ribbons and floated on the water bath. For further expansion and quality of the fished out tissue (picking up tissue section) sections from the water bath, a surfactant (which increase surface tension) such as 30% alcohol or acetone (1:10-1:5 ratio), or gelatin may be used in the water bath to 581 expand and dissolve the paraffin wax and for a better adhesion on the mounting slide can be used. Sometimes at this stage a warmer plate may do the melting residual paraffin wax in the tissue that has been picked up and this does increase the adhesion to the slide Then once the selected tissue section are mounted on the slide it will be once more now reverseally decerated/hydrated by immersing the tissue section into xylene and alcohol grades accordingly (a reverse alcohol grades of dehydrating). After this hydrating, we attempt to dehydrate with increasing alcohol and acetone grades respectively, just like the beginning of the tissue processing at the final steps. Lastly it is stained (vide supra) and a mountant such as resinous mountants or albumin applies to the section and cover-slipped and will be kept for further studying. The final step in tissue processing is to assign the accession number, tissue source and the technologist initials to the silde (s). Attention: some of the troubleshooting points in microtomy includes as followings: 1) When ribbon and consecutive sections are curved; -The cause may be the block is not parallel to the chuck and blade (trim with sharp scalpel until parallel. - blade is blunt in one area (use different part of the blade or replace) -surplus area of wax at one side (trim away excess wax) -tissue varying in consistency (reorient block by turning 90° or treat and cool block with ice cube, or mount individual sections) 2) Alternate sections thick and thin; -wax is too soft for tissue or conditions (cool block, or use a higher melting point wax) -block or blade loose (tighten the block or blade) -insufficient clearing angle (increase slightly the angle) -mechanism of microtome faulty (check for the faults, pawls may be worn) 3) Section role in tight coils; -blade blunt (change blade or use different side) -too little rake angle (reduce blade tilt, if clearance angle excessive) -section thickness too great for wax (reduce section thickness or slightly higher the melting point wax, while cutting breathe into the section). 3) Section will not make ribbons; -wax too hard for sectioning (breathe into or re-embed in lower melting point wax) -debris on blade edge (clean with xylene moisten cloth) -knife angle too steep or too shallow (adjust the optimal angle) 4) Calcified areas in the sections; -nick in the blade (use different part of the blade or replace) -hard particles in the tissue (if calcium deposits; decalcify or remove with sharp point scalpel) -hard particles in the wax (reembed in fresh filtered wax): for other important details of section troubleshooting, refer to the terminal references in this textbook. Microscopy (Turgeon et al) The light microscope or photomicrograph was discovered by Antony Leeuwenhoek in 1677, the structure has unique properties to 582 study cells and tissues sections (for ideas how to adjust the microscope by means of Köhler illumination refer to clinical chemistry: part one of this textbook). The microscope is composed of eye piece lenses (oculars), body tube, carousel with objective lenses built-in, condenser, stage with clips and vernier scale, aperture iris diaphragm, course and fine adjustment knobs, arm, stage adjustment, rheostat, field diaphragm, condenser focus knob, interpupillary distance adjustment, diopter adjustment, source of light, switch on and off and base or stand. There are different kinds of microscope that uses in clinical and pathology laboratory: these are light microscope (bright-field microscope), phase-contrast microscope, interferencecontrast microscope, polarizing microscope, dark-field microscope, fluorescence microscope and electron microscopes (EMs). In these types of microscope the light microscope has somehow modified to adjust to the need of the study, except in EMs, for example in dark-field microscope, light microscope has modified with a special sub-stage condenser to allow visualization in the dark field or with polarizing microscope the light microscope has been modified with polarizing lenses or filters The following figure (Fig. 2-2) is the ultrastructure of a bright-field microscope. Fig. 2-2: the ultrastructure of a histology bright-field photomicrograph (microscope) The illumination system of light microscope has been discussed in clinical chemistry section of part one and no longer will mention in here. There are few term need to be cleared in microscopy and are the 1) magnification of the microscope, 2) resolving power or resolution, and 3) NA or numerical aperture. The magnification of a microscope refers to the number of times the objective lens or lenses can be multiply to the ocular(s), this means that if high power objective is 40x [the magnification is inscribed on the metal body of the lens (-es)], once this number times to ocular which is 10x we will have a total magnification of 400x; with oil immersion lens it is a total of 1000x. For the resolving power or resolution of microscope this would be the ability of the microscope lenses to resolve image. This is the ability to distinguish the closest distance two objects can be close together and still be distinguished, mathematical configuration of this concept is in term of numbers and 583 indices (ratio). This is NA (numerical aperture) which is the index or the ration of this phenomenon of resolving power. The human eye resolution (resolving power) is 0.25 mm, for light microscope is 0.25 μm and electron microscope (EM) is 0.5 nm. In empty magnification there is no clarity or resolution between the two objects close to each other and they may appear as dumbbell. The most important of microscope is the condenser and I will explain a little about this structure in the microscope. Condenser (for the microscope image refer to diagnostic hematology, part two of this textbook) commonly known as Abbé-type. This is a piece of equipment in the microscopes that have built on-board and is responsible for focusing the beam of light into the slide and to the objectives and then into the oculars. It is a significant part in Köhler illumination and correction (adjustment) of the light path. This is composed of two linearly adjusted pieces of lenses (condenser lenses) which can be manipulated by means of condenser focusing knob and condenser centering adjustment knob. It has direct relationship with the iris diaphragm and field diaphragm where the light intensity and amount of light will be controlled by opening or closing of the iris diaphragm passing the light there into the condenser. Still in regards to microscope some terms usually we hear related to the objectives and these are achromatic objectives, apochromatic objectives and planachromatic objectives. Accordingly the achromatic objectives refer to correction of chromatic aberration and most of the brightfield microscope have been made this way, it has sharp focus at the center of the lens and lens periphery are out of focus, also apochromatic objectives means the correction had been made for the chromatic and spherical aberrations and finally the planachromat objectives is the objectives that lens in this is flat and it is better for 40x and 100x magnifications: this is because the lens is in focus and flat as cited. It is more expensive in comparison to other condenser lenses. In these lenses chromatic aberration which is the short blue light focus through glass or lens in comparison to red band of light in the spectrum of white light has been corrected in these achromatic, apochromatic (with spherical correction has also been done/vide supra) and panachromat lens corrections. The manufacturers of lenses make these types of lenses to produce a high quality lenses and to correct these lens defects. For more information of light properties and lenses such as refraction, retardation, angle of incidence, refractive index, total internal reflection, angle of refraction and light waves characters such as amplitudes, wavelength, frequency, coherent and noncoherent waves and other details of different microscopies as well refer to J. D. Bancroft et al. or other text books cited/Turgeon et al: (physics of lens and the light waves) (Bancroft et al). Staining principles (Kennedy et al and Kedrnan et al) Staining tissue is for studying cells and other tissue components: this was introduced by Leeuwenhoek in 1714. He was the discoverer of microscope as well. There are two types of dyes used in histotechnology and histopathology. The first are the natural dyes which are obtained from biological sources, plants and seeds and the second are the synthetic dyes, artificially prepared by dye industry. Natural dyes are further exemplified by saffron, hematoxylin, orcein and mucicarmine or 584 commonly known as carmine. The synthetic dyes example is aniline dye which was the first synthetic dyes: other synthetic dyes are derived from coal-tar, which are the extracts and modifications of coal-tar. Now-a-days biologic stain commission (BSC) handles the upgrading and regulation for the dye industry and the dye are classified according to the color index number (CI) which is a number unique to each batch of dyes or stains manufactured to avoid pitfalls of common names in dyeing industry it consists of 5 digit number: i.e. (32643); as with history of stains, it is interesting to know that Henry Perkin’s is renowned for synthesizing the first artificial dye in 1856. benzene. The Figure 2-3: shows the Stains Fig. 2-3: shows the benzene molecular structure a predecessor molecule to different coal-tar and subsequently different synthetic dyes. The most important natural and synthetic dye used in histotechnology is hematoxylin it is used in combination with synthetic dye as eosin for tissue staining. Other natural dyes also are used for the same purpose in histotechnology as this is a choice of the histotechnologist for dyeing purposes. Additionally, Hematoxylin is obtained from the logwood tree “Hematoxylin campechianum”: hematoxylin in itself is not a dye and must be oxidized to acidic hematein to become a dye with its properties. Also carmine is derived from cochneal: it is a red crystalline purification product of this dye (Gamble et al). As with other dyes, natural dyes are obtained from plant sources such as orcein or saffron. As said in relation to synthetic dyes, these dyes are derived from or manufactured from transformation of coal-tar derivatives. Coal-tars are derivatives of hydrocarbon molecular structure of benzene. Benzene can transform into electrophilic aromatic substitution as nitration, sulfanation, halogenation and acylation. These changes and transformations reflect dyes molecules transformation and substitutions. Quinone or quinoid compounds absorb light in the visible spectrum however this molecule is derivative of benzene (without any chromophore and itself is a chromogen) and benzene only absorb light at UV (ultraviolet) region and has no color, nevertheless a molecule such as trinitrobenzene has a yellow color and is a chromophore: a derivative of benzene, in this series, next sequence also point that if trinitrobenzene attaches to a auxochrome such as –OH radical (hydroxyl radical), it will become trinitrophenol or commonly known as picric acid, a yellow dye used in histologic staining. 585 The following terms are essential to histotechnologist: 1) Chromophore, 2) Chromogen and auxochrome, and 3) Cationic and anionic dyes. Chromophore is a substance in the dye that can confer the dyeing properties to the dye and to other substances, these substances (group of atoms) can attach to chromophore to able the chromphore to become coloring and dyeable or absorb light. The molecular structure that has chromophore in it, is called chromogen: this is the colored component of a dye: this is although colored but has no dye property, if there are more chromophore molecules in the dye, it will have a denser and more defined coloration or staining properties. Therefore we have distinguished between colored substance(s) and the dyes. Chromophores are electron accepting groups while auxochromes (another types of molecules in the dye) are electron donating groups. Nevertheless there are three distinctive forms of molecules in dyeing and staining: 1) Chromophore, 2) Auxochrome and 3) the Chromogens. Combination of chromogen and auxochrome enables the production of a conjugated system as chromophore. We have different types or electron acceptors (chromophores): 1) ethylene (C=C), 2) carbonyl (C=O), 3) thiazol (C=S), 4) cyanic (C=N), 5) azo (N=N), 6) nitroso (N=O), 7) nitro (NO2) and 8) quinoid. Also we have three types or classes of dyes 1) Quinoid group, 2) Azo group, and the 3) Nitro group. In this respect, there are two quinoid forms 1) paraquinoid, and 2) orthoquinoid. The examples of these (quinoid group) types of dyes are: basic fuchsin, acid fuchsin, eosin, hematein (hematoxylin), pararosaniline, aniline and crystal violet. The next is the nitro (group) dyes: picric acid and Martius yellow are of these exemplary dyes. Azo dyes examples are: orange G, chromophore 2R, panceau 3R, sudan IV, methyl red, congo red, oil red O, luxol-fast-blue tartarazine, scarlet B (biebrich scarlet) and metanil yellow (Bancroft et al and Kiernan et al) and 3) nitro dyes as trinitrophenyl. Respectively ionizing radicals in auxochrome enables chromogen (chromophore bearing molecule) to attach to opposite charges, an cationic auxochrome attaches to anionic (acidic) portion of the tissue constituents such as nucleus, RNAs etc. or vise-versa an anionic auxochrome attaches to cationic (basic) portion of the tissue constituents as cytoplasm. Dyes are classified according to their basic (cationic) or acidic (anionic) properties and the way they attach to acidic or basic parts of tissue components and these dye properties are used in general or special tissues staining. Dye modifiers are molecules or chemicals that alter the dye intensity such as methyl groups (CH 3 ), or aryl group (C 6 H 5 ) or ethyl group, etc. Dyes are called as basophilic (like anionic tissue components) attaches to acidic tissue components: i.e. nucleus and acidophilic dyes (like basic components of tissues) attaches to basic tissue components such as cytoplasm. In neutral dyes both components such as anionic and cationic (ionizing components/auxochromes) are present: example is Romanowsky stain for neutrophils. 586 Amphoteric dyes act either as an acid (–) or as a base (+). This depends on PH of the surrounding tissues or the medium. Above the IEP (isoelectric point) they act as an acid and below as a base: i.e. as hematein in red cells/erythrocytes and eosinophils. Attention: It must be mentioned and noted that PH indicators are colored but they are not dyes they change color due to proton transfer, but they do not confer dye properties to other substances. Basophilic tissues are divided into the following tissues: they like cationic/basic dyes and these tissues exemplified by basophils, chromatin of the nucleus, DNA, RNA, muscles, cartilages, and nucleic acid. Acidophilic tissues like anionic/acidic dyes and these tissues are exemplified by, erythrocytes, collagen, eosinophils, carboxylated, sulfated mucosubstances and cell’s cytoplasm or etc. In tissue staining principles and mechanisms, there is coloration with dyes, sliver impregnation methods, in situ hybridization procedures, vital staining, histochemical procedures, etc. here I will explain only tissue coloration with hematoxylin and esoin. For the rest a proper textbook in histotechnology and histopathology should be consulted. In dye coloration the most popular stains are hematoxylin and eosin stains that apply to the tissues. The steps involve include regressive staining and progressive staining: in regressive staining we decolorize and differentiates the satins with acid alcohol for differentiation (by acid differentiation or mordant differentiation and or by solvent differentiation) following the initial stages of staining by washing with Scott’s water or bluing agent to have a better and brilliant staining however in progressive staining the stain will be used in few step procedures without decolorization and differentiation. Hematoxylin is usually performed by regressive staining (Gamble et al & Kiernan et al). Tissue staining In direct staining of tissues, the use of such stains as eosin for tissue accomplishes with only one dye and the color varies with the different shades of the same single color with a simple single staining steps or procedures, in this the staining/dye is in an alcoholic or aqueous solution, while in indirect staining the stain uses a mordant to form tissue-mordant-dye complex to form a lake. The mordant complex is not soluble in the alcohol or aqueous solution, in indirect staining the tissue is stained once (primarily) and then it is differentiated with some means (as mentioned/vide supra) to remove the general staining of tissue section except the component specifically retained the stain. In addition to staining mechanisms we have different terms operating in this laboratory specialty area thus we have accentuators, accelerator, trapping agents and argyrophil (Greek: love silver) and argentaffin (Greek: neighboring silver) reactions. As for some of them the short definition are as follows: accentuators increase the staining power of the dye; the accelerators used in metallic impregnation and are the same as accentuators. With respect to argentaffin it means that it (this type of cells) reduces ammoniacal sliver nitrate solutions to metallic silver nitrite rapidly and spontaneously. It does not need the help from reducing substances as cellular 587 examples we have melanin (skin), and entrochromaffin cells (i.e. as chromaffin cells, such as pheochromes or pheochromocytes, enteroones are especially located in the intestine/ carcinoid cells of the GIT/gastrointestinal epithelium and cells of adrenal medulla are also chromaffin cells and the related tumors, i.e. pheochromocytomas can be used for screening tissue sections for these tumors) to reduce the ammoniacal sliver nitrate solution to metallic silver nitrite, this is accomplished by Masson Fontana method. With respect to argerophil reaction, in this method we do need the use of reducing substances or light to reduce silver nitrate solution to metallic silver (nitrite), i.e, reticulin cells, the techniques is as in Bielschowsky method: the reduction of silver solution is done by the dye itself which contains reducing substances. In addition to factors that affect staining quality are: PH of the medium, mordant, temperature, ionic strength, tissue concentration and tissue density. Changes in these parameter and factors obviously affect the outcome of staining, for example tissue density can trap the dye outside and to some extend will not allow the dye to penetrate the tissue and a reverse is true as well. The temperature may affect staining in such a way that it may over-stain or understain the selected tissue (s). For concepts of metachromasia and its types and leuco-compound refer to J.D. Bancroft et al. or other sources available in references. In short in metachromasia the stain coloration by some tissue components stains differently from original dye color (ation), example aniline dyes or toluidine blue that changes color to dark pink when dyeing the cartilage. In leuco-compound the dye lose its dye properties due to destruction or reduction of its chromophore due to some tissue reduction characters and there will be no coloration or dyeing, I put it simply as this is a colorless compound formed by reduction of the dye: these dyes may retain their original dye color or character by oxidation (using atmospheric oxygen) or by other means. The following discussion is how the procedure of hematoxylin-eosin staining can take place in tissue staining. Usually when the H & E (hematoxylin and eosin) staining is performed the hemotaxylin stain would be done first commonly in regressive form of staining (vide supra) and then followed by eosin staining. The hemotoxalyin stain as with other dyes must be filtered before the staining procedure and should be ripened or oxidize to hematein to form a lake with tissue and the mordant, called “tissuemordant-dye”. This ripening or oxidation may be by air or atmospheric oxygen or by chemical means (chemical oxidizers). The hematoxylin must be in a light and sunny place with complete exposure to room air and sun’s light to ripen/oxidizes: this may take 1-2 months as it is a slow process. This may take up to 3 months to fully oxidize, note that over-oxidation will result into darker staining and even might disqualified the stain from routine staining. Mordant is used to attach the dye hematein to the tissue and hematein on its own cannot stain the tissues, therefore there is a need of chemical or atmospheric oxidation and thus mordant is to part/confer the properties of tissue staining/dye to hematein. The chemicals such as aluminum, ferric ion, chromium and copper may acts as mordant and forms cationic lakes with the tissue components, also anionic lakes can be formed by the action of mordants such as 588 phospho-tungstic acid and both (cationic and anionic dyes) convey the staining properties to the tissues. Figure 2-4 shows the molecular structure of hematoxylin and hematein with oxidation stage. Fig.2-4: the molecular structures of hematoxylin and hematien: with oxidation sequence. In this respect the combination of aluminum and hematein will form hemalum or dyemordant-tissue complex (a lake) commonly known as “aluminum lake”, this binds to the phosphorly group of DNA as a cationic lake and dyes the cellular nucleus as blue. The hemalum stains tissues a blue-lake. However the binding of ferric salts to hematein forms “ferric lake”: (iron hematoxylin/blue-black lake), may stain the nucleus as blue-black as contrasted with hemalum. Once the oxidizer is acid such as mentioned (phosphor-tungstic acid) it may form an anionic lake. The principles of cationic dyes and anionic dyes mentioned above are applicable for hematoxylin and eosin staining. In general hematoxylin stain is an acid dye as it changes to cationic dye by means hemalum or other cationic lakes, although with phosphotungstic acid may form anionic lake. In fact it is mostly used in form of hermalum. In this respects eosin is an acid stain used for cytoplasmic staining. The physicochemical explorations of staining are out of scope of this text. For further explanation refer to the terminal references. There are different types of hematoxylin stains with different chemicals and components namely for Alum hematoxylin we have as: 1) Mayer’s hematoxylin, 2) Harris’s hematoxylin, 3) Cole’s hematoxylin, 4) Garrazzi’s hematoxylin, 5) Gill’s hematoxylin; for Iron/ferric hematoxylin we have: 1) Weigert’s iron hematoxylin, 2) Heidenhain’s iron hematoxylin, 3) Verhöeff’s iron hematoxylin; and lastly the Tungsten hematoxylin as: 1) Phophotungstic Acid Hematoxylin (PTAH); and for Molybdenum hematoxylin, we have 1) Phosphomolybdic acid stain. For routine H & E (Hematoxylin & Eosin) staining we use Alum hematoxylin sloutions. Attention: If the tap water is not alkaline use Scott’s bluing substitutes as bluing agents and all stains/dyes must be filtered before application in staining methods, this will clear impurities and contaminants at one time. Staining of H and E may be accomplished by regressive or progressive staining. In progressive all basophilic tissues such as nuclei are blue in color as stain with hematoxylin, at next stage if water is not alkaline used bluing agent (such as Scott’s), and then wash and check microscopically for proper staining of the tissue elements, proceeds with buckets of eosin stain: once stained with eosin rinse with tap water and dehydrate, clear in 589 xylene and mount the slide with tissue and coverslip, the cytoplasm looks pink with eosin. The regressive is the most popular and common in comparison with progressive. The staining proceeds with the same sequence of staining with progressive staining only when hematoxylin stain is applied, it will be followed by microscopic differentiation with acidalcohol solution (decolorizer). The rest remains with eosin steps. Follow the incumbent laboratory schedules and timing for H & E staining protocols, the following figure (Fig. 2-5) is the molecular structure of eosin as a histologic dye (Kiernan et al) strength, and 4) Fixation quality. As an example PH factor may affects staining quality by using dyes such as amphoteric dyes, or a leuco-compound and tissue metachromasy, while other stains may need an act of staining at an optimal and certain PH to result in an optimum quality as clarity; stain purity/or impurities and brilliant staining outcome. The type of fixation may as well affect the staining quality this is the same for dehydration and clearing which all have critical effects on staining properties. Chapter Three (3) A ll the following stains reagents and methods/procedures have been taken from the following original on line Web sources (URL): (http://www.histologycourse.com/Pigment% 20%26%20Mineral%20Staining.pdf) Staining of mucins (Gamble et al, Lamar et al & Bancroft et al.) Fig. 2-5: the molecular structure of eosin Other stains/dyes such as phloxine B, erythrosine (tetraiodofluorescein), eosin Y (tetrabromofluorescein), eosin B, biebrich scarlet (scarlet B) and orange G are used in histotech lab for the staining purposes of cytoplasm. Lastly there are factors that affect staining quality by optimization of the staining process these enumerates namely as: 1) Tissue components, 2) PH of the mordant, 3) Ionic Mucin or mucins (which indicate a more complex nature of mucin) are carbohydrates containing macromolecules such as glycogen, and mucosubstances. Other glycogen and carbohydrates substances (polysaccharides) found in the in the body and typed as mucins include mucins in cartilages known as chondroitin sulfate, lyoglycogens and desmoglycogen all are various types of mucins, they can be found in epithelial cell lining of intestinal tract, or respiratory and reproductive tract and or in pancreas and breast. In this respect the proteoglycons are not mucins and will not 590 discuss further in this section. The purpose of tissue demonstration of such substances is indicated in tumor and glycogenoses detection and study in such tissues, there are several tissues staining techniques used in the demonstration of mucins. As we can name there are staining procedures/techniques such as alcian blue, PAS (Periodic Acid Schiff), mucicarmine/carmine, and colloidal iron techniques. There is specific amino acid core or protein core in mucins with tandem repeats in its molecular structures which these repeats depend on the size and variation in amino acids of the mucins molecule. These are typed as MUC 1 (with distribution of episialin in ovaries, pancreas and breast), MUC 2 (with larger distribution in large and small intestines), MUC 3 (within Jejunum) and MUC 4 (distribution within transbronchial mucosa), etc. MUC (Mucin) genes codes for these different genetically distinct forms of glycoproteins/mucosubstances. The staining property and histochemical reactivity can be applied to carbohydrate moiety of the molecules not the protein portion or the core. There are two types of mucins, one is acid mucins: its divisions are such as strongly sulfated (as in connective tissues and epithelial cells); weakly sulfated, carboxylated sialomucin and sulfated sialomucin (such as in hyaluronic acid). The second one is neutral mucins with no subdivisions. Mucins special stains have cationic charged group (vide supra) in solutions at specific PH. Stains such as alcian blue and muncicarmine has cationic properties and joins/attach to anionic portion of anionic carboxylated or sulfated polysaccharide chain of mucins molecules in the tissues by means of electrostatic forces, thus conveying the coloration properties. Figure 3-1, indicates Alican blue/PAS staining of rat colon, note the coloration of nucleus and cytoplasm with dark blue stains for mucins. Combination of alcian-blue and PAS can differentiate between neutral mucins and acid mucins. In most protocols we stain with standard alcian-blue and subsequently stain with Periodic Acid Schiff (PAS). This subsequent staining with PAS stains neutral mucins are bright magenta. The tissues and cells that contain both mucins color dark blue or purple coloration. Fig. 3-1: the alcian-blue/PAS technique in staining rat colon: showing blue and magenta color of nucleus and cytoplasm respectively: note the accumulation of blue color at the periphery of the epithelial glandular crypts of Lieberkühn. Staining of connective tissue (Lamar et al) 591 Connective tissues provide maintenance and support of other types of tissues in the body. There are different types of connective tissues. It connects and support as a matrix of other cells and tissues as per se. These include osseous bone (as will be covered in bone staining section), and organs such as pancreas, heart and kidney that need support by connective tissues, these connective tissue substances and components include, collagens, elastic fibers (which imparts strength to the connective tissue), reticulin (reticular fibers). The cells in the connective tissues are mast cells, histocytes, fibroblasts, mesechymal cells, plasma cells, blood cells, adipose (adipocytes) and fat tissues and marcrophages (as histocytes etc.). The best tissue stains for connective tissue fibers as collagen may consist of Masson, Gomori and van Gieson techniques. The reticulin fiber as a sort of collagen may be detected by means of argyrophilic reaction/techniques as mentioned earlier in staining methods. For screening of elastic fibers as a kind of connective tissue which gives strength and elasticity to the tissues are Verhoeff, van Gieson, Weigert and Gomori’s stains, as well H & E stains are the routine staining techniques for these fibers. Accordingly collagen is the most common connective tissues fibers. It is normally stained with classification such as collagen type I, II, II, and etc. These may be named as Collagen type I would be the most common collagen, type II is the articular cartilage and type III collagen would be of granular tissues, type IV is the basal lamina, etc. The most popular stain for collagen is the Masson trichrome stain. The reaction of this stain is based on the three dyes as: 1) Weigert’s hematoxylin, 2) Beibrich Scarlet/acid fuchsin, and 3) aniline blue. In this reaction nuclei are black, keratin, cytoplasm and muscle fibers are red and collagen and mucous is blue. The following are the Mason trichrome stains reagents and procedures and Figure 3-2 shows the staining properties of Masson‘s trichrome in a tissue: All the procedure and reagent protocol presented in this part of the text is taken from Web address referred in the references. Masson’s Trichrome Stain Purpose of the stain: To differentiate between collagen and smooth muscle in tumors and to identify increases in collagenous tissue in diseases such as cirrhosis of the liver. Principle of the stain: This reaction is based on a three dye stain. Fixatives: Bouin’s solution is preferred, but 10% Neutral Buffered Formalin (NBF) may be used. Sectioning: Paraffin sections at 4-5 microns. Controls: Every tissue has an internal control, but uterus, small intestine, appendix or fallopian tube will be good material. Reagents: 1. Bouin’s Solution: Picric acid saturated formaldehyde & Glacial acetic acid. 2. Weigert’s Iron Hematoxylin: Solution A: Hematoxylin & 95% Alcohol; & Solution B: 29% Ferric chloride, Distilled water & glacial acetic acid. Mix equal parts of solution A & B. 3. Biebrich Scarlet-Acid Fuchsin Solution: 1% Biebrich Scarlet, 1% Acid Fuchsin & Glacial acetic acid. 592 4. Phosphotungstic/Phosphomolybdic Acid solution: Phosphomolybdic acid, Phosphotungstic acid & distilled water. 5. Aniline Blue solution: Aniline blue dye, Glacial acetic acid & distilled water. 6. 1% Acetic acid solution: Glacial acetic acid & distilled water. Procedure: 1. Deparaffinize and hydrate slides to water. 2. Rinse slides well in water. 3. Place sections in Bouin’s solution for 1 hour at 56 degrees Celsius. This step is where we the tissue is be mordanted. 4. Rinse slides in running tap water. This step is necessary for the total removal of the yellow coloring on the sections. 5. Stain sections in Weigert’s hematoxylin for 10 minutes. This step is where we are staining the entire nucleus. 6. Rinse slides in running water for 10 minutes. This step helps with the removal of excess Weigert’s Hematoxylin Stain. 7. Stain slides in Biebrich Scarlet-acid fuchsin for 2 minutes. This step will stain the cytoplasm of the tissue and other tissue elements. 8. Rinse slides in running tap water to remove any excess staining. 9. Place slides in the Phosphotungstic/Phosphomolybdic acid solution for 10 to 15 minutes. This step removes any staining that has occurred in areas not cytoplasmic. 10. Stain slides in Aniline blue solution for 5 minutes. This is recommended for small amount of collagen. For large amount of collagen Light green counterstain is recommended. This step is the collagen staining step. 11. Place slides in 1% acetic acid solution for 3 to 5 minutes. . This is a differentiating step. 12. Dehydrate slide with 95% alcohol, 100% alcohol, clear in xylene and coverslip with a resinous mounting media Results: Nuclei…..………………………………… …………..…….. Black Cytoplasm, keratin, muscle fibers…………………………... Red Collagen and Mucous………………………..…………… ….Blue Fig. 3-2: shows the nuclei black, cytoplasm red and collagen blue by Mason trichrome stain in a tissue, it stains fibers in heart, kidneys, lungs and other connective tissue bearing organs. Elastic fibers are produced by fibroblasts and smooth muscle cells of connective tissues of arteries it expands and stretches to give flexibility to the organs. These are bundles of proteins. The chosen stain for the elastic fibers are Verhöeff elastic stain, aldehyde fuchsin elastic stain. The Verhöeff staining procedure and reagent are presented in the following; Figure 3-3 shows the Verhöeff staining of elastic fibers. Verhöeff’s Elastic Fiber Stain 593 Purpose of the stain: Demonstration of elastic fibers in target tissue. Principle of the stain: The tissue is over stain with a solution of hematoxylinferric chloride - iodine solution. Ferric chloride and iodine serve as mordant, but they also have an oxidizing function in helping the conversion of hematoxylin to hematein. Fixatives: Any well-fixed tissue may be used, 10% Neutral buffered formalin or Zenker’s is preferred. Controls: Aorta embedded on edge or a cross section of a large artery. 1. Lugol’s iodine: iodine, potassium chloride and distilled water. 2. 10% Ferric chloride: Ferric chloride & Distilled water no 3. Alcoholic Hematoxylin, 5%: Hematoxylin & 95% Ethanol 4. Verhoeff’s Elastic stain: 5% alcoholic hematoxylin, 10% Formal Lugol’s Iodine. Van Gieson Solution 6. 5% Sodium thiosulfate: Sodium thiosulfate & distilled water. : Procedure 1. Deparaffinize and hydrate slide to water 2. Place sections in Verhoeff’s Elastic stain for 1 hour, this solution must be prepared fresh and in the order given, otherwise poor staining may result. . 3. Wash slides in 2 changes of distilled water. This step will remove excess Verhoeff’s Elastic stain. 4. Differentiate section in 2% Ferric chloride until elastic fibers are distinctive and the background is colorless or light gray. If sections are differentiated too far, re-stain in the Verhoeff’s elastic stain. This step is a critical step, since we are dealing with the differentiation of elastic fibers. 5. Rinse slides in distilled water. 6. Place sections in Sodium Thiosulfate for 1 minute. This step will remove any nonspecific staining from the tissue section. 7. Wash slides in running tap water for 5 minutes. 8. Counterstain slides in van Gieson solution for 1 minute. This step will allow for the staining of collagen, muscle and cytoplasm. Differentiate slides in 95% alcohol. 9. Differentiate slides in 95% alcohol. 10. Dehydrate slide 100% alcohol, clear in xylene and coverslipe in rezinous mounting media. Results: Elastic fibers.............................................................. ........Blue-black to black Nuclei............................................................. ...................Blue to black Collagen....................................................... .....................Red Other tissue elements........................................................ Yellow 594 Fig. 3-3: the Veroeff-VanGieson stains of elastic fibers of the Aorta, for coloration results refer to text. Reticular fibers technique Figure 3-4 shows staining with silver nitrate staining of reticular fibers: Silver Techniques for Reticular Fibers 1. Oxidation: Changes of the glycol group to the aldehyde groups. - Phosphomolybdic acid - Potassium permanganate - Periodic acid 2. Sensitization: Usually is a metallic impregnation step. Impregnation is the deposition of metallic salts on or around, but not in, the tissue element to be demonstrated. The exact chemical reaction is not understood. The sensitizing metal is then replaced by silver. - Uranyl nitrate -Ferric ammonium sulfate -Dilute solution of silver nitrate 3. Silver Impregnation: Involves treating tissue with an ammoniacal or diamine silver complex. 4. Reduction: The silver is reduced into a visible metallic state. - Formaldehyde 5. Toning: Term used when bound metallic silver is treated and the color of the impregnated component changes from brown to black. The metallic silver is being replaced by metallic gold. Gold Chloride (toning agent) 6. Unreduced silver: This step prevents any non-specific bound silver remaining in the section from being reduced by a later exposure to light. - Sodium Thiosulfate (Hypo) 7. Counterstain: May or may not be used, is up to the laboratory procedures. - Nuclear Fast Red (If counterstain is used) Fig. 3-4: silver nitrate staining in rat pancreas: the stain is used for neuroendocrine, paracrine and neurofibrillary tangles in CNS, in response and reactivity to chromaffin cells in these tissues, also positive in entrochromaffin 595 cells of GIT (gasrrointestinal pheochromaffin cells): it is an excellent detection tool in tumors of neurofibrillary and endocrine cells such as pheochromocytomas. Gomori Stain for Reticular Fibers Purpose of the stain: Demonstration of reticular fibers in tissue sections. A change of normal pattern as seen in some liver diseases, is also an important diagnostic finding. Principle of the stain: The tissue will be oxidized converting the sugar group to aldehyde followed by a sensitizing step for metallic salts. Impregnation of with silver will follow, then it will be reduced to a metallic visible state by formaldehyde. Gold chloride is applied as a toner which will change the bound silver from a brown color to a black color. A hypo solution will follow in order to remove any unreduced silver, and if desired a counterstain is applied. Fixatives: 10% Neutral buffered formalin is preferred. Sectioning: Cut paraffin sections from 4 to 5 microns. Controls: Liver is a very good control tissue. Reagents: 1. 10% Silver nitrate: silver nitrate & distilled water. 2. Potassium hydroxide solution: potassium hydroxide & distilled water. 3. Ammoniacal silver solution: 10% silver nitrate & potassium hydroxide. Concentrate ammonium hydroxide is added drop by drop until it becomes slightly cloudy and then clear again. 4. 0.5% Potassium permanganate: potassium permanganate & distilled water. 5. 2% potassium metabisulfite: Potassium metabisulfite & distilled water. 6. 2% ferric ammonium sulfate: Ferric ammonium sulfate & distilled water. 7. Formalin solution: Formaldehyde, 37 to 40% & distilled water. 8. 0.2% Gold chloride: Gold chloride and distilled water. 9. 2% Sodium thiosulfate: Sodium thiosulfate & distilled water. 10. Nuclear Fast Red Procedure: 1. Deparaffinize and hydrate slides to water. 2. Place slides in 0.5% potassium permanganate solution for 1 minute. This step is changing the glycol group to aldehyde group. 3. Rinse slides in tap water for 2 minutes. 4. Place slides in 2% potassium metabisulfite for 1 minute. This step will remove the purple color from the tissue section. 5. Rinse slides in tap water for 2 minutes. 6. Place section in 2% ferric ammonium sulfate for 1 minute. This is the sensitization step. 7. Rinse slides in tap water for 2 minutes. Followed by two changes of distilled water. 8. Place section in the Ammoniacal silver for 1 minute. This is the impregnation step. 9. Rinse slides in distilled water for 20 seconds. 10. Place slides in formalin solution for 3 minutes. This is the reduction step. 11. Rinse slides in tap water for 3 minutes. 596 12. Place slides in 0.2% gold chloride solution for 10 minutes. This is the toning step. 13. Rinse slides in distilled water. 14. Place slides in potassium metabisulfite for 1 minute. 15. Place slides in 2% sodium thiosulfate. This is the step where the unreduced silver is removed. 16. Rinse slides in tap water for 2 minutes. 17. Counterstain if desired with Nuclear Fast Red for 5 minutes. 18. Rinse well in tap water. 19. Dehydrate slide with 95% alcohol, 100% alcohol, clear in xylene and coverslip with a resinous mounting media. Results: Reticulin fibers.........................................................Bl ack Collagen......................................................... ...........Taupe PTAH for Cross-Striations and Fibrin Purpose of the stain: For the demonstration of cross-striations and fibrin. Crossstriations are a diagnosis feature of rhabdomyosarcomas or tumors arising from striated muscles figure 3-5, shows PTAH staining of muscle fibers.. Principle of the stain: This stain has been referred to as a polychrome stain because one solution can give two major colors. Fixatives: Zenker’s solution is preferred, but 10% NBF can be used. Sectioning: Cut paraffin sections from 4 to 6 microns. Controls: Skeletal or cardiac muscle for cross-striations or a section with fibrin for fibrin demonstration, or cerebral cortex for glial fibers demonstration. Reagents: 1. PTAH solution: Hematoxylin, Phosphotungstic acid, distilled water. 2. Gram Iodine: Iodine, Potassium Iodide & distilled water. 3. 5% Sodium thiosulfate & distilled water. 4. 0.25% Potassium Permanganate: potassium permanganate & distilled water. 5. 5% Oxalic acid: oxalic acid & distilled water. Procedure: 1. Deparaffinize and hydrate slides to water. 2. If tissues are formalin fixed, mordant in Zenker’s solution containing 5% acetic acid overnight at room temp. 3. Place slides in tap water. 4. Place slides in Gram Iodine for 15 minutes. 5. Rinse slides in tap water. 6. Place slides in 5% sodium thiosulfate solution for 3 minutes. 7. Rinse slides in tap water for 10 minutes. 8. Place sections in 0.25% potassium permanganate for 5 minutes. 9. Rinse slides in tap water. 10. Place slides in 5% Oxalic acid for 1 minute. 11. Wash slides in running tap water for 10 minutes. 12. Stain slides in PTAH solution overnight at room temperature. 13. Dehydrate rapidly through two changes of 95% alcohol, 100% alcohol, clear in xylene and coverslip. Results: Cross striations and Fibrin.......................................................Blu e Nuclei............................................................. .........................Blue 597 Collagen......................................................... .........................Red Brown Fig.3-5: the striated muscles (skeletal muscles) appear blue with red cells and the perivascular collagen appears reddish brown in PTAH staining for distinction of rabdomyosarcoma: a malignant tumor of muscle fibers. Jones Method (Periodic Methenamine Silver) Acid Purpose of the stain: This procedure best delineates the glomerular basement membrane Fig. 3-6, shows methenamine sliver stain in tissues of glomerular basement membrane. Principle of the stain: Methenamine silver demonstrates the carbohydrate component of basement membrane by oxidizing the carbohydrate to an aldehyde. The tissue will be oxidized converting the sugar group to aldehyde followed by a sensitizing step for metallic salts. Impregnation of with silver will follow. Gold chloride is applied as a toner which will change the bound silver from a brown color to a black color. A hypo solution will follow in order to remove any unreduced silver, and light green is applied as a counterstain. Fixatives: 10% Neutral buffered formalin is preferred. Sectioning: Cut paraffin sections from 2 microns. Controls: Kidney has an internal control. Reagents: 1. Stock Methenamine Silver: 3% methenamine solution & 5% silver solution. 2. 5% Borax solution: Sodium borate & distilled water. 3. Working Silver: Stock methenamine silver, Borax solution and distilled water. 4. 1% Periodic acid solution: Periodic acid & distilled water. 5. 0.02% Gold Chloride Solution: Gold chloride & distilled water. 6. Light Green Solution: Stock light green solution & distilled water. Procedure: 1. Deparaffinize and hydrate slides to water. 2. Place slides in 1% Periodic acid solution for 15 minutes. This is the oxidizing step where is changing the glycol group to aldehyde group. 3. Rinse slides in tap water for 2 minutes. 4. Place section in the Methenamine silver for 15 to 20 minute. This is the impregnation step. 5. Rinse slides in heated distilled water. 6. Place slides in 0.2% gold chloride solution for 2 minutes. This is the toning step. 7. Rinse slides in distilled water. 8. Place slides in 2% sodium thiosulfate for 1 minute. This is the step where the unreduced silver is removed. 9. Rinse slides in tap water. 10. Counterstain in light green solution for 1 1/2 minutes. Dehydrate slide with 95% alcohol, 100% alcohol, clear in xylene and coverslip with a resinous mounting media. 598 Results: Basement Membranes................................................. ........Black Background.................................................... .....................Green Fig. 3-6: methenamine sliver stain (MST) of glomerular basement membrane in a case of renal failure: indicates proliferative, necrotizing sclerosis of basement membrane with vasculitis and extravasation of red cells in the bowmen’s capsule: note the black basement membrane and bluish green of background. Oil Red O Method for Neutral Fats Purpose of the stain: Demonstration of neutral lipids in frozen sections, Figure 37, presents fat cells demonstration with oli red O staining techniques. Principle of the stain: This is a physical stain and the dye used must be more soluble in the tissue lipid than in the solvent in which it is dissolved. Must not be water soluble. Must be strongly colored, and must act with tissue constituents only by solution. Fixatives: 10% NBF or calcium formol, because of lipid dissolving abilities, no alcoholic fixatives should be used. Sectioning: Cut frozen sections at 10 microns. Controls: Most tissue contains fats, normally no control is needed. Reagents: 1. Oil Red O Stock solution: Oil Red O, Isopropanol, 98%. 2. Oil red O Working solution: Oil Red O Stock solution & Distilled water. Mix well and let stand for 10 minutes before using. Procedure: 1. Cut frozen sections and fix in 40% formaldehyde for 1 minute, and wash well in tap water. Blot off excess water. If the tissue has been previously fixed, then there is no need of fixation. 2. Stain slides in Working Oil Red O solution for 10 minutes. 3. Wash sections in tap water. 4. Stain slides in Harris’ hematoxylin with acetic acid for 1 minute. This step will stain all the nuclear details of the tissue. 5. Wash slides in running tap water for several minutes. 6. Blue slides in ammonium water. 7. Wash slides in tap water. 8. Mount sections with an aqueous mounting medium. 9. Seal edges with fingernail polish. Results: Fat ........................................................................ .Intense Red Nuclei............................................................. ........Blue 599 Pigments are coloring agents that may deposit in cells or tissues as cytoplasmic and they are granular in nature. As above, these (pigments) are divided into artifacts, hematogeneous and non-hematogeneous in origin. Artifacts are artifactual debris and these are deposited in the cells and tissues during dyeing or other chemical manipulation of tissues such as mercury deposits, formaldehyde pigments and chrome pigments. Exogeneous pigments are made outside of the body and due to contamination or processes they appear internally, i.e are carbon, asbestos fibers, and tattoo pigments. Endogenous pigments being mentioned already and they are originated internally. . Fig. 3-7: reddish neutral fat stained with oil red O, note the blue nuclei in the matrix. Staining of pigments (Bacroft et al) Endogenous pigments are either hematogeneous or non-hematogenous. Hematogeneous is divided to hemoglobin with hem (as the pigment part) and globin portion as protein portion (in amino acid pool). Hem is further divided to iron and bile pigment. In here bile pigment is biliverdin (with bilirubin its further product.). In addition iron can be reused in the hemoglobin or be broken down to hemosiderin Endogenous hematogeneous pigments such as hemoglobin is stained with eosin stain, or hemosiderin as found in conditions such as hemosiderosis would be stained with Perl’s Prussian Blue stain (PPB). Also bile pigment, biliverdin and bilirubin found in jaundice may be stained with Hall’s stain for bile pigment with Fouchet reaction. In consideration of endogenous nonhematogeneous pigments we have melanin as a pigment or chemical bound to proteins and lipofuchsin as for lipid pigments. Regarding the melanin it is found in hair shafts, skin, retina, iris and certain parts of CNS (central nervous system) and is a brown to black pigment. It is stained with bleaching and 10% potassium permanganate. With regards to lipofuchsin as said we have wear and tear pigments as lipofuchsin and are found in heart, liver and neurons. To detect lipofuchsins and lipidic pigments we utilize Oil Red O or Sudan black B (SBB). 600 For endogenous deposits we have urea deposited in tissues as in gout tophi and Gout. Other ions such as cupric, ferrous and ferric, calcium, phosphate and carbonate may deposit in tissues and interfere with normal interpretation of the histopathology slide(s) these may be normal constituents of bodily tissues electrolytes or so. Whereas minerals such as silver, lead, copper and gold are heavy metallic deposits and are always pathologic/heavy metal toxicity/poisoning. The other most known pigments of cytoplasmic granular in origin include ‘C” cells of thyroid, pancreatic endocrine cells and entrochromaffin cells of intestines along with adrenal chromaffin cells and neuroendocrine cells of nervous system and endocrine system. These are being demonstrated by means of argyrophils (need a reducer) and argentaffin techniques as mentioned in pervious sections (vide supra). Some of the special stains reagents and procedures are included in here: Prussian Blue Stain for Ferric Ion (Fe+3) Purpose: The detection of ferric iron in tissue. Found normally in spleen and bone marrow. Principle: Detects the loosely bound protein complexes (As in hemosiderin). Strong bound iron will not react. Sections are treated with an acidic solution of potassium ferrocyanide and any ferric ion present will react in a bright blue pigment called Prussian Blue. Fixative: Alcohol or 10% Neutral buffered formalin. Technique: 4 to 5 μm paraffin sections. Control: a section containing ferric iron must be used. Reagents: 2% Potassium Ferrocyanide: Potassium ferrocyanide & distilled water 2% Hydrochloric acid Solution: Concentrated hydrochloric acid & distilled water Nuclear Fast Red solution: Nuclear fast Red, Aluminum sulfate, distilled water & Thymol Procedure: 1. Deparaffinize and hydrate slides to water 2. Place slides in a freshly prepared solution of a 50:50 mixture of 2% potassium ferrocyanide & 2% hydrochloric acid for 20 o minutes at 60 C. 3. Wash slides thoroughly in water. 4. Counterstain slides in Nuclear fast Red solution for 5 minutes. 5. Rinse slides in running tap water for 1 minute. 6. Dehydrate sections in 95% alcohol and two changes of absolute alcohol. 7. Clear slides in three changes of xylene and mount in a synthetic resin mounting media. Results: Nuclei & hemofuchsin ……………………………………………… …...…Bright Red Hemosiderin (iron)……………………………………… ……………….….Blue Background………………………………… ………………………….…….Pink Following figure 3-8 is the staining pattern of Prussian blue of bone marrow deposits of iron. 601 ferricyanide, pH to 2.4 with 1N hydrochloric acid Mayer’s Mucicarmine Solution Metanil Yellow: Metanil yellow, distilled water & glacial acetic acid Procedure: Fig. 3-8: Perl’s Prussian Blue (PPB) staining of bone marrow for iron deposits, blue deposits indicates iron deposits. Note the fat/cell ratio. Schmorl’s Technique Reducing Substances for Purpose: The detection of ferrous iron in tissue. Principle: Detects the ferrous iron in tissue. Sections are treated with an acidic solution of potassium ferricyanide and any ferrous iron present will react to form an insoluble bright blue pigment called Turnbull’s blue (ferrous ferricyanide). Fixative: 10% Neutral buffered formalin. Technique: 4 to 5 μm paraffin sections. Control: a section containing melanin or argentaffin granules. Reagents: 1% Stock ferric chloride: Ferric chloride & distilled water 0.1% Potassium Ferricyanide: Potassium ferricyanide & distilled water Ferric chloride-Potassium ferrocyanide: 1% ferric chloride & 0.1% Potassium 1. Deparaffinize and hydrate slides to water. 2. Place slides in a freshly prepared ferric chloride - potassium ferricyanide solution and stain for 3 changes of 7 minutes each. 3. Rinse sections in distilled water. 4. Stain slides in working Mayer’s Mucicarmine for 1 hour. 5. Rinse slides rapidly in distilled water. 6. Counterstain slides in Metanil yellow for a few seconds. 7. Rinse slides rapidly in distilled water. 8. Dehydrate sections in 95% alcohol and two changes of absolute alcohol. 9. Clear slides in three changes of xylene and mount in a synthetic resin mounting media. Results: Reducing Substances.……………………………… ………..………………Blue-green Goblet Cells, mucin……………………………………… …………….……Rose Background………………………………… ……………………………….Yellow-green Following figure (3-9) is for Schmorl’s technique of tissue for reducing substances. 602 the DNA bonds at 60°C then the exposed aldehyde is demonstrated with PSA (Schiff reagent) . Fontana Masson for Melanin and Argentaffin granules Fig.3-9: indicates chromaffin cells in adrenal medulla of mice stained with Schmorl’s potassium ferricyanide techniques. It is out of the scope of this text to present all stains reagent and procedure with regard to pigments and other tissues although I will name the stain procedures for each pigment in here to know the detail techniques and staining protocol refer to the terminal references. In addition to the above we use FontanaMasson technique for argentaffin substances, cells (tissues), for argyrophil cells (need reducing substances) we apply Grimelius’ argyrophil staining technique. Also for the same substance detection, Churukian-Schenk argyrophil technique may be added to this staining protocol. In concern of urates the ideal staining method is Gomori’s methenamine silver stain. As mentioned for bile (salts) staining Hall’s techniques are available (also modified Fouchet/reaction staining technique is the classical staining techniques for liver bile salts/pigments). For detection of calcium Von Kossa and Alizarin red S stains are used in routine staining of calcium deposits. And lastly rhodamine stain is used for copper with Feulgen reaction for DNA (deoxyribose) staining: in this acid is used to breakdown Purpose: Demonstration of argentaffin substances such as melanin, argentaffin granules of carcinoid tumors, and some neurosecretory granules. Principle: Some processes are argentaffin meaning they have the ability to bind silver from a silver solution and to reduce it to the visible metallic silver without the need for a separate reducing agent. Fixative: 10% Neutral buffered formalin (NBF), alcoholic fixative should be avoided since it tends to dissolves the argentaffin granules. Technique: 4 to 5 μm paraffin sections. Control: a section of skin for melanin, appendix or small intestine for argentaffin granules. Reagents: 10% Silver Nitrate Fontana Silver Solution: 10% Silver Nitrate & Ammonium hydroxide Gold Chloride (toning agent) Sodium Thiosulfate Nuclear Fast Red Procedure: 1. Deparaffinize and hydrate slides to water. 2. Place slides in silver nitrate solution in water bath at 56 degrees. For 1 hour. 3. Rinse sections in distilled water. 4. Immerse slides in gold chloride for 10 minutes. 5. Rinse slides rapidly in distilled water. 6. Place slides in sodium thiosulfate for 5 minutes. 7. Rinse slides in distilled water. 8. Counterstain slides in Nuclear fast Red for 5 minutes. 603 9. Wash slides for at least 1 minute in distilled water. 10. Dehydrate sections in 95% alcohol and two changes of absolute alcohol 11. Clear slides in three changes of xylene and mount in a synthetic resin mounting media. Results: Melanin .………………………….………………… ……….............................…Black Argentaffin granules…………………………………… …………………………Black Nuclei………………………………............. ....………………………………….Pink Figure 3-10 shows staining of tissue with Masson-Fontana technique for melanin and argentaffin cells. Fig. 3-10: Masson-Fontana staining of melanin in epithelium for demonstration of argentaffin cells in the tissue section: note that the detections are used for diagnosis of chromaffin cell carcinoids and cancer of the said tissues such as pheochromocytoma of adrenal and skin/intestine neuroendocrine glands. and Grimelius’ Argyrophil Stain Purpose: Demonstration of argyrophil granules in neurosecretory tumors. Principle: Some processes are argyrophilic meaning they need a reducing agent in order to bring the silver to a visible metallic form. Fixative: 10% Neutral buffered formalin (NBF). Technique: 4 to 5 μm paraffin sections Control: an argyrophilic-positive carcinoid tumor is preferred, but a section of small intestine can be used. Glassware should be chemically cleaned. Reagents: 1% Silver Nitrate: Silver nitrate & Distilled water 0.2M Acetic acid: Glacial Acetic acid & Distilled water 0.2M Sodium Acetate: Sodium acetate & Distilled water Working Silver Solution: Acetic acid-acetate Buffer, 1% Silver nitrate & Distilled water Reducing Solution: Hydroquinone, Sodium sulfite & Distilled water Nuclear Fast Red: Nuclear Fast Red, Distilled water & Thymol Procedure: 1. Deparaffinize and hydrate slides to water. 2. Place slides in working silver nitrate solution in water bath at 60 degrees for 1 hour. 3. Drain slides briefly. 4. Place slides in freshly prepared reducing solution preheated to 40 - 50 degrees Celsius for 1 minute. 5. Rinse slides well in distilled water. 6. Repeat step 2 for 10 minutes. 7. Drain slides briefly and place in reducing solution again for 1 minute. 8. Rinse slides in distilled water for 2 minutes. 604 9. Counterstain slides in Nuclear Fast Red solution for 5 minutes. 10. Dehydrate sections in 95% alcohol and two changes of absolute alcohol 11. Clear slides in three changes of xylene and mount in a synthetic resin mounting media. Results: Argyrophil granules.……………………......................... .................................…Dark brown to black Argentaffin granules…………………………………… ……………………..…Dark brown to black Nuclei……………………………............... …………………………………… Red Background………………………………… …………………...………………Paleyellow-brown Figure 3-11 presents the staining of argyrophil granules by the Grimelius argyrophil stains. Fig. 3-11: Grimelius argyrophil staining for pancreatic endocrine cells. Compare with the result of staining for the said technique. Churukian-Schenk Method for Argyrophil Granules Purpose: Demonstration of argyrophil granules in neurosecretory tumors. Principle: Some processes are argyrophilic meaning they need a reducing agent in order to bring the silver to a visible metallic form. Fixative: 10% Neutral buffered formalin. Technique: 4 to 5 μm paraffin sections Control: an argyrophilic-positive carcinoid tumor is preferred, but a section of small intestine can be used. Glassware should be chemically cleaned. Reagents: 0.3% Citric acid: Citric acid & distilled water Acidified water: Distilled water and enough 0.3% Citric acid solution. 0.5% Silver Nitrate: Silver nitrate & Distilled water Reducing Solution: Hydroquinone, Sodium sulfite & Distilled water (Prepare just before use) Nuclear Fast Red: Nuclear Fast Red, Distilled water & Thymol Procedure: 1. Deparaffinize slides through xylene and alcohol's to acidified water, pH 4.0 to 4.2. 2. Place slides in 0.5% silver nitrate solution in a 43 degrees water bath for 2 minutes. Transfer to a 58 degrees water bath for 2 hours. 3. Rinse slides in three changes of distilled water. 4. Transfer slides to reducing solution already heated in the 58 degrees water bath for 30 to 60 minutes. 5. Rinse sections in three changes of distilled water. 6. Return sections to the same silver nitrate of step 2 at 58 degrees for 10 minutes. 7. Rinse slides in three changes of distilled water. 8. Place slides in the same reducing solution of step 4 at 58 degrees for 5 minutes. 9. Rinse slides in three changes of distilled water. 605 10. Counterstain slides in Nuclear Fast Red solution for 3 minute. 11. Rinse slides in three changes of distilled water. 12. Dehydrate sections in two changes of 95% alcohol and two changes of absolute alcohol. 13. Clear slides in three changes of xylene and mount in a synthetic resin mounting media. Results: Argyrophil granules.……….……………………….… …………....................Black Argentaffin granules…………………………………… ………………………..…Black Nuclei………………………………………. ..............…………………………… Red Background………………………………… .……………………...………………Yellow -brown Figure 3-12 presents staining of tissue with Churukian-Schenk technique for argyrophil cells. Fig. 3-12: indicates churukian-Schenk argyrophil staining of tissue: Compare the results of the technique with the method’s coloration. Bile Stain reaction (Hall)/Fouchet Purpose: Demonstration of bilirubin in tissue. Principle: Bilirubin is oxidized to biliverdin in an acid medium. This oxidation reaction is rapidly accomplished by ferric chloride in trichloroacetic acid medium. Fixative: 10% Neutral buffered formalin Technique: 4 to 5 μm paraffin sections Control: a section containing bile must be used as a control. Reagents: 10% Ferric chloride: Ferric chloride & Distilled water Fouchet’s Reagent: Trichloroacetic acid, 10% Ferric chloride & distilled water. Van Gieson’s solution: 1% acid fuchsin & Saturated Picric acid. Procedure: 1. Deparaffinize and hydrate slides to distilled water. 2. Wash sections well in distilled water. 3. Stain sections in freshly prepared Fouchet’s solution for 5 minutes. 4. Wash slides in tap water, then rinse in distilled water. 5. Stain sections in Van Gieson’s solution for 5 minutes. 6. Place slides directly into 95% alcohol and rinse well. 7. Clear slides in three changes of xylene and mount in a synthetic resin mounting media. Results: Bile or Bilirubin…………………………………… ………...…….…Emerald green to olive drab 606 Background………………………………… ………...………………Yellow Figure 3-13 shows the Von Kossa staining of tissue. Fig. 3-13: shows tissue staining with Von Kossa’s staining method for tissue section staining. 1. Deparaffinize and hydrate slides to 50% alcohol. 2. Rinse slides rapidly in distilled water. 3. Place sections in alizarin red S staining solution. Check the reaction microscopically and remove slides when an orange-red lake forms (30 seconds to 5 minutes). 4. Shake off excess dye and carefully blot the sections. 5. Dehydrate in acetone (10 to 20 seconds) and in acetone-xylene mixture (10 to 20 seconds). 6. Clear slides in three changes of xylene and mount in a synthetic resin mounting media. Results: Calcium deposits……………………………….…… …………………....…….…Orange-red Figure 3-14 shows the alizarin red S staining of calcium in tissues. Alizarin Red S Calcium Stain Purpose: To identify the presence of calcium in tissue. Principle: Alizarin red S will react with the cations calcium, magnesium, manganese, barium, and strontium, but normally only calcium is present in tissue in sufficient quantities for demonstration. Calcium forms an alizarin red s-calcium complex in a chelation process. Fixative: Alcoholic fixatives or 10% Neutral buffered formalin. Technique: 4 to 5 μm paraffin sections Control: a section containing calcium must be used as a control. Reagents: Alizarin Red S Staining solution: Alizarin Red S & Distilled water; Mix the solution and pH to 4.1 to 4.3 with 0.5% ammonium hydroxide. The pH is critical. Procedure: Fig. 3-14: alizarin red S method for calcium deposits (orange red deposits). Rhodanime Method for Copper 607 Purpose: To detect copper in tissue, especially in liver in Wilson’s disease. Principle: This procedure is more sensitive than the rubeanic acid method; however, it has suggested that Rhodanine demonstrates the protein to which the copper binds rather than the copper itself. Therefore, although considered more sensitive, it may be less specific than the rubeanic acid methods and false-positive results may be obtained. Fixative: 10% Neutral buffered formalin. Technique: 4 to 5 μm paraffin sections Control: a section containing copper must be used as a control. Reagents: Saturated Rhodanine solution: Rhodanine & absolute alcohol Working Rhodanine solution: Saturated Rhodanine solution & distilled water. Filter before use. Diluted Mayer’s Hematoxylin; Mayer’s hematoxylin & distilled water. 0.5% Sodium borate: Sodium borate & distilled water. Procedure: 1. Deparaffinize and hydrate slides to distilled water. 2. Using plastic coplin jars, place slides in 50 mL of working Rhodanine solution. Leave 18 hours at 37 degrees. 3. Rinse slides well in distilled water. 4. Stain slides in Mayer’s hematoxylin for 10 minutes. 5. Rinse slides in distilled water. 6. Rinse slides quickly in 0.5% sodium borate solution. 7. Clear slides in three changes of xylene and mount in a synthetic resin mounting media. Results: Copper………………………….………… ……………………....…….…Bright red to red yellow Nuclei………………………..…………… ……………………………….Light blue Figure 3-15 represents a tissue staining of rhodamine for copper deposits. Fig. 3-15: indicates hepatolenticular degeneration (Wilson’s disease) of liver stained with Rhodamine techniques for copper deposition as seen here with bright red deposits. These are the accumulation of copper in the aforesaid disease/tissues. Bone processing and staining (Schenk et al) Bone slabs come in two forms, 1) cortical type bone and the other, 2) is the compact bone. These are very strong bones such as femur (i.e for the cortical bones) or exterior surface of the flat bones such as ribs, skulls, trabecular bones, cancellous bones, epiphysis, marrow cavities, vertebrae and or the center of the flat bones (for the compact bones). These are used in bone processing and bone tissues studies received in the histology lab and must be processed accordingly. Physiologically and hiostologically remodeling of bone takes place more frequently in young but much less frequently in old ages: this is a process of constant dying and repairing of the osseous tissue 608 may be a facilitated process as in pathology or a normal trend. The remodeling of the osseous tissue is followed by restoration and deposition of minerals so that this process manufactures the bone matrix. Bone consists of elements that needed for its development such as cells and organic extracellular matrix. Failure of these destruction and repair/remodeling processes result into disease states that damages bone structural remodeling such as osteoporosis or osteodystrophy. Available percentages of these cells to minerals consist of 70% minerals to 30-33% organic matters/cells. An important part of bone is collagen fibers which is distinctly different from other tissues collagens. Bone collagen is mineralized and banded as in form of lamellae. Respectively cement lines the proteoglycan ground substance of the bone where it outlines the fibers. Thus lamellae (contains concentric layers of bone surrounding the Haversian system) demonstrate the micro-anatomic structure/pattern of the bone and other structures such as Haversian canals, canaliculi and lacunae (contains osteocytes) in compact bones, Recalling from our histology and anatomy for the purpose of the bone tissue structural visualization: we have the Haversian and non-Haversian systems each consists of lamellae roughly parallel to the surface of the bone and concentrate channels of Volkmann’s canals contains one or more blood vessels respectively; figure 3-16 shows a Haversian system in osseous tissue This figure shows a system of osteon, Volkmann’s canals, and bone cells in lamellae in cross section. Fig. 3-16: a photomicrograph of Haversian system in osseous tissue in compact bone, a system of osteon, canaliculi, lacunae, lamellae and black spaces containing osteocytes. Note the haversian/canal/system of osteonic tissue in cross sections. Magnification 100x decalcified bone. Histologically there are three different kinds of bone cells: 1) osteoblast responsible for making bone, 2) osteoclasts for bone destruction, and 3) osteocytes which are the bone maintaining cells. These cells are responsible for bone remodeling and their interplay result into remodeling of bone. The osteocytes reside in a place called “lacunae” within the bone. Still with regards to these cells, we have ACP (Acid Phosphatase enzyme), which is found in the osteoblasts, and ALP (Alkaline Phosphatase) found exclusively in osteoclasts (refer to clinical chemistry/enzymes part one) detectable in bone with aids from histochemistry enzyme studies we demonstrate tumors associated with the ACP and ALP enzymes and their cell origin. In this respect bone minerals include calcium (as in calcification), phosphate 609 where it admixes or combines with hydroxyl ions to form hydroxyl apatite, which is the chief structural element of bone. Additionally, due to presence of 38% minerals such as calcium in bone, amorphous phosphate would form. If we add hydroxyl ions to amorphous phosphates there will be formation of hydroxyl apatite. This may be a form of crystal lattice formation (spherulite) in which citrate, carbonates and fluoride ion (as others such as magnesium and potassium, including other minerals etc.) may be substituted or included as for phosphates. Ossification (bone formation) is the process of bone formation and development is divided into the following two classifications: 1. Intramembranous ossification (i.e. skull, sternum and pelvic bone) and, this occurs in flat bones, its mesenchyme cells transforms into osteoblasts with subsequent bone formation. 2. Endochondral ossification (i.e. long bones and major parts of skeleton). This occurs in most long bones of the skeleton and the mesenchyme cells differentiate in this type of ossification. This develops and lay down in cartilage forms and then develops into final shape of the bone itself. Additionally, with tissue processing techniques, bone technique is more difficult than other tissue procedures (due to hardness of bone and its processing) and should be attended with care. With regard to bone techniques: for the decalcified bone, frozen sections, paraffin and celloidin sections must be used. For mineralized bone (containing minerals), frozen section, plastic tissue blocks must be used for microtomy or saw/ground/grinding section. In this connection mineralized bone sections can be used for microradiographic and histomorphometric studies. Bone biopsies are applications that use for identification of metabolic bone diseases (MBD), tumors (osteosarcoma), hematopoietic diseases, infections, osteomalacia/rickets, osteoprosis and osteodystrophy. Bone slabs and amputations routinely uses for tumors, gangrene, chronic osteomyelitis and osteochondritis. Respectively, resection specimens are mostly used for benign or low-grade malignant osteoid. And finally mineralization is determined for the purpose to ascertain the type of treatment is available to offset these above changes. Bone processing (Schenk et al & Bancroft et al) For bone processing decalcification of tissue slabs must be done, this must occurs before tissue cutting and microtomy or after tissue fixation. Most of time, this is done subsequent to fixation. This can be accomplished by a mild or strong acid such as formic acid, nitric acid or hydrochloric acid, etc. Before this process began tissue have to be fixed by 10% NBF (Neutral Buffer Formalin). NBF fixative is suitable for MMA (metamethyl acrylic waxes) sections as well. Some fixatives such as Zenker’s solution, Carnoy’s fluid or B-5 are toxic to the tissue and may damage it. Therefore must not be used. In regards to sawing of the bone slabs in preparation to subsequent processing stages, this can be processed by selecting a type of or handyman’s bench band saw, etc: with this the first cut is done through the 610 mid-plane of the bone and then this can be proceeded by cutting parallel to the first cut: a 3-5 mm thick slabs are cut and prepared. The tendons and soft tissues attached to the bone taken from the diseased patient must be removed before sawing/cutting the slabs and can be fixed additionally to 24-48 hours of fixation. A saw guide plate or a wood block held against the first cut edge insures an even slice. After fixation we decalcify bone by immersing it into a weak/or strong acid as cited above. The purpose of decalcification is to remove calcium from the tissue and leave it with a minimum artifacts and an ease on microtomy. Calcium (The American heritage science dictionary) is found in teeth, bone and other calcified tissues such as T.B. (tubercle, bacilli affected tissues), atheroma or atherous tissues (as in atheromatosis), and in tissue infarction such as Gandygamn phenomenon and cardio vascular calcification (Miller et al). The 33% of the osseous tissue is composed of cells, fibers and ground substance as collagen (vide supra) and the rest are other elements occupying the bone matrix as calcium, phosphate or etc. Decalcification may be done by formic acid, nitric acid or hydrochloric acid. Decalcifying fluids are employed for such purpose and is composed of different solutions. This decalcifying fluid are named as Godding’s Stewart’s fluid with formic acid content and formalin, or van Ebner with hydrochloric acid and or EDTA (chelating substance) known as “versenen or squestrene”. It will take a long time to decalcify however EDTA can result in an excellent decalcification. The ratio of tissue to decalcifying agent must be maintained at 20-50 times (X) of the size of the specimen. An optimal decalcifying solution must have the following properties: 1. Act quick on the bone 2. Not interfere with subsequent process of staining procedures, etc. 3. Must not damage tissue, it should be as little damaging as to the tissue(s) as possible, 4. As thoroughly remove the calcium, To test bone decalcification is important and it is crucial to know the end-point of decalcification as well. This may be done by the following procedures: 1. Radiographic x-ray of the tissue (excellent) 2. Chemical end-points such as saturated lithium carbonate solution or 5-10% sodium bicarbonate solution for several hours or sodiumoxalate solution 3. Probing and needling the decalcified tissue (the worst) As with chemical end-point following decalcification, tissue may be rinsed with running tap water, this may take for small tissue sections for 30 min to 1-4 hours for large pieces. The most popular chemical end-point testing for decalcification in Canada and or North America is sodiumoxalate: in this technique: the end of the decalcification (end-point) will be performed when decalcification has reached, this procedure applies when the end point has reached and we follow as: to 5.0 ml of decalcifying fluid, add concentrated NaOH or NH 4 OH to pH = 8-10 and then add 1.0 ml of K or Na oxalate: therefore if there is any cloudiness in the solution it indicates presence of calcium ion. The 611 following chemical formula (Eq. 1-1) explains this chemical process: Eq. 1-1: O 4 + 2Na Ca + Na 2 C 2 O 4 → CaC 2 By addition of alkali there may be cloudiness, indication of presence of calcium ion: if the solution is clear it indicates complete decalcification. Tissue photoradiograph is an excellent form of end-point testing however it is expensive and is radiopaque with tissue treated with mercury fixatives. There are chemical decalcifying agents available commercially and are known as RDO®, Cal-Ex® and decalcifying fluids etc. Physical testing of end-point examination such as probing and needling are not recommended and are damaging to the tissue section. Attention: Bone fixation for metabolic bone disease studies need to be fixed with formaldehyde fixatives using Millonig buffer (sucrose, NaOH, NaHPO 4 or NaH 2 PO 4 /sodium monophosphate or sodium diphosphate) and un-decalcified bone is assayed. Employ agitation for decalcification process: this included in factors that affects a better decalcification which are the temperature (best is at room temperature), agitation, and complete suspension of bone into the decalcifying fluid to increase the rate of decalcification. Still with bone processing we have, subsequent to fixation of the bone sections and decalcification we do dehydrate the bone tissue sections with the aforesaid dehydrating fluids/agents (such as grades of alcohols). Next after this we have clearing of the tissues with clearing agent mentioned above (such as xylene and acetone or xylene substitutes) in here the best suited for the situation is xylene or acetone or xylene substitutes. This step leads to microtomy where paraffin with added plastic resins polymers (i.e. iliac crest trefine biopsies) may use paraffin sections and embedding whereas undecalcified bone slabs may be embedded with/in MMA/Methamethyl Acrylate, when MMA has been added with ethylene glycol it is known as GMM (Glycol Methamethyl Acrylate), the undecalcified bone procedure are for the purpose of studying bone with the its minerals components intact. Therefore there is no need of decalcification procedures mentioned for the decalcified bones: the knife or blade is special in these types of sectioning and cutting, we used tungsten carbide tipped blades/knife for undedalcified bone. For processing of the undecalcified bone tissues we can utilize acrylic resins or plastics as MMA or GMM (kernacs et al). These are firmer in consistency and hold the hard tissues reasonably well without any breaking down of the paraffin wax or other conventional waxes used for other tissue processing. In here the general principle of microtomy as the next stage in the process of the bone tissue sectioning and ribbon sectioning will be covered. This part of microtomy is similar as other tissues cuttings, nevertheless, due to nature of this tissue obviously proper care must be applied: longitudinal sections of the cortical bone may section better when bone is oriented at right angle to the blade/knife and “cut along the grain” for this type of tissue a sharp blade is mandatory and is the key to easy ribbon sectioning, following microtomy, tissue ribbon sections must be selected and floated into the water-bath with flattening and adhesion: for mounting, resinous mountant (mounting media) such 612 as resin polymers, or poly-lysine coated slides are popular. The following terminal concept of bone tissue section would be hydrating and dehydrating for the subsequent stages and finally staining of the tissue sections, a couple of staining techniques are included in here (most common methods): this embraces the decalcified bones and mineralized bones (undecalcified). The compilation names of staining methods for decalcified bones compasses H & E staining, staining for collagen and staining for mucopolysaccharide as mentioned under mucosubstances, these stained include PAS and reticulin staining methods, the above decalcified staining methods can be processed and stained as mentioned for other tissue processing sections. Figure 3-.17 is H & E staining of the decalcified bone section viewed under photomicrograph. Also it follows the most common staining bone Fig. 3-17: A 5 micron thick section of H & E staining of mature bone. Specimen was decalcified in a 5% formic acid prior to paraffin embedding. The hematoxylin section stained with Gill’s II hematoxylin and counterstained with Eosin Y/phloxine stain (H & E). This is a popular staining method in histopathology and histotechnology lab. Tissue sections with undecalcified mineralized bone sections: these include such staining methods as frozen section staining with H & E stains and for MMA sections (for mineralized sections): we have the availability of H & E, solo-chrome cyanine method and modified Von Kossa staining method (mentioned below/vide infra) for undecalcified bones. Following the undecalcified stains citation, I will mention the mineralized bone staining procedure as in modified Von Kossa methods, these are described subsequently. Figure 3-18 shows the staining of undecalcified bone sections with the Von Kossa staining method (Villanueva et al). Fig. 3-18: Von Kossa staining of undecalcified mineralized bone sections with MMA/GMM embedding with demonstration of black field showing mineralization areas of the healing bone with two micron thickness. 613 Modified Von Kossa's methods (for calcium deposits modified for plasticembedded sections of bone/un-decalcified bone) Fixation: 70% alcohol, 10% buffered formalin. Solutions Aqueous silver nitrate, 5% Aqueous sodium thiosulfate, 5% Mayer's hematoxylin Basic fuchsin in 70% ethanol, O.l% Procedure l. Deplasticize in xylene for 4 hours at 55° C. 2. Transfer to 100% ethanol 100% ethanol 95% ethanol 95% ethanol 75% ethanol Distilled water 3. Incubate in silver nitrate solution at room temperature under ultraviolet light for a minimum of 6 hours. 4. Wash thoroughly in distilled water for 3 to 5 minutes. 5. Rinse in the sodium thiosulfate solution for 2 to 3 minutes. 6. Wash thoroughly in distilled warer for 3 to 5 minutes. 7. Stain in Mayer's hematoxylin for 15 minutes. 8. Wash in distilled water for 5 minutes. 9. Transfer to 70% alcohol for 1 minute. 10. Stain in 0.l% basic fuchsin for 15 to 30 seconds. 11. Dehydrate and clear in the following: 95% alcohol l0 dips 100% alcohol 15 dips L00% alcohol 15 dips Xylene 20 dips Xylene 20 dips Xylene 1 min. 12. Mount in Eukitt's mounting medium. Result Calcium deposits-dark brown to black Osteoid seams-bright pink Nuclei-purple Cytoplasm-pink Fluorescein labeling also is used in bone tissue screening and staining, the antibiotics (tetracycline/with fluorescent property) may be labeled with calcium to fluoresce in the tissue section as the principle tenet of the fluorescein staining method. A short description of morphometry of bone will be mentioned in here; this is as one of the special techniques for assessing the bone minerals, it consists of quantitative and qualitative assessment. As a major advantage of this method is to study and evaluate Metabolic Bone Diseases (MBDs) such as post-menopausal osteoporosis, osteomalacia, osteitis deformans and osteodystrophy. The fluorescent techniques mentioned previously involves in these evaluation, once the fluorescent dye in form of tetracycline antibiotic injected into subject/patient with MBDs prior to sampling (iliac crest biopsy) at a certain time, the fluorescent labeled conjugate will be found in the bone tissue (after the iliac or sternal biopsies): this fluorescent antibiotic parts with the calcium and other minerals and fluoresces in the sample: therefore a subtle study may be performed to measure the minerals. This is called “bone histomorphometric analysis.” During histomorphometric analysis, an assessment of relative amount of trabeculae, osteoid, restoration and deposition (apposition) can be made through photomicrgraphic observation and 614 analysis. These studies may be done with manual, or semi-automated or fully automated instruments. With this method we can relatively estimate the degree of remodeling due to changes in osteoblasts, osteocytes and osteoclasts and minerals: cells and elements responsible for remodeling of bone tissues. Amyloid substance staining Amyloid substance is a derivation from some proteins and carbohydrate in partly of immunoglobulin nature. The carbohydrate nature consists of polysaccharide and mucoploysaccharides contents of 1-5 %. The substance historical discovery was marked by the work of Virchow (1853) demonstration of the amyloid materials known to that day by name “waxydegeneration”. Today it is quite recognized that there are different types or classes of amyloid. The classification of amyloid substance still not straight forward and is haphazard, but although exists. Amyloid substance such as “amyloid-P and amyloid-A” (P derived from plasma and serum amyloid A) or “amyloid-S” (derived from serum) are widely recognized along with other numerous amyloid substances indicated by their location of affection or origin. Amyloids are fibrous proteins and carbohydrate with molecular structure forming β-pleated sheets. The following criteria apply to detection of amyloid materials (Bancroft et al & Kiernan et al): 1. These are amorphous materials that are predominantly extracellular, eosinophilic substance 2. Upon detection with Congo red stain, it gives an apple green positive birefringence (faintly refractile) matter with emission action of polarizing light 3. It has a beta-pleated sheet structure, and 4. Has a fibrillary ultrastructure pattern. Amyloid substance traditionally used to cover and deposits in organs and tissue after their long term formation in disease states as in syphilis and T.B patient in the past nevertheless in twentieth first century its transformation commonly occurs in diseases such as chronic inflammatory conditions: i.e. tuberculosis, rheumatic arthritis (RA), rheumatic fever and heart disease (RF/RHD), diabetes and in most recent era the debilitating illness such as Alzheimer’s disease. The amyloid term was originally coined to signify the reaction of amyloid substance with iodine dye reaction which ultimately used to yield a “violet color” with carbohydrate and mucopolysaccharide, thus the term “amyloid” was named for such materials and reaction with amyloid. Amyloid substance due to its long duration of occurrence is quite difficult to detect and identifies during the affected person’s life span/time nevertheless tissue biopsies from the affected organs which are safely biopsyable (such as kidney, liver, spleen or etc.) may provide a mean to diagnosis the condition, although organs such as brain and heart are quite difficult to be biopsied and therefore escape the detection option. Therefore a solid detection cannot be established in such cases for inaccessibility to biopsy them. Recently a heavy accumulation of such materials in certain organs such as rectum (rectal mucosa) can be obtained through rectal mucosal biopsies or so on. The fact is that if the test 615 (histochemical staining) is negative this will not preclude the presence of the illness/amyloid substance due to error in sampling as it always exists. This substance has a unique fibrillary structure aside from other fibers, which is independent from the original anatomic site. For classifying amyloid substance: a current classification includes 1) primary amyloidosis or amyloids, this is a localized deposition in some mesodermal tissues origins such as kidneys, heart, liver and skin. And 2) secondary amyloidosis or amyloids affecting a preexisting pathological conditions such as chronic inflammatory conditions, diabetes, rheumatism (as in RF, RHD and RA) or in recent era with Alzheimer’s disease, which may lead to a systemic involvement and deposition. In Alzheimer’s disease it may manifests to organ involvement and neurofibrillary tangles (this is covered in neuropathology and neurohistotechnology at the next chapter (4) in this part five/vide infra) and may form in addition to yielding of dementia and amentia, with ultimate organ failure, with many years prior to the commencing of acute and clinical apparent disease. Pathophysiology of amyloidosis include self-aggregation and polymerization of the amyloid proteins due to the presence of large proportion of beta-pleated sheets secondary to conformation after the precipitation events, this may be evident in such disease as Huntington disease, α 1 antitrypsin deficiency, the plasma Serpin disease, prion diseases, and certain hemoglobin and neurofibrillary degenerative diseases (Bancroft et al.). Diagnosis depends upon biopsies of the biopsy-able organs and processing and staining of tissues obtained in such a way by special histochemisrty stains such Congo red and Sirius red stains. as As said it is an amorphous, extracellular, eosinophilic, faintly refractile substance or aggregates in the affected tissues or organs. The following figure 3-19 shows a closely taken (close-up) photomicrograph picture of an amyloid substance in specific tissue section as in bone (Highman’s Congo red is specific histochemical stain for amyloids). Sirius red technique may be used as well to stain this substance. A control slide must run with the test slides so as to avoid the fainting of character of the substance after primary stain preparation. As for immunohistochemistry the use of immunoperoxidase/DAB (Diaminobenzedine Hydrochloric Acid/which is carcinogenic) method may be applied for such staining study purposes in tissue sections. Fig. 3-19: (a) is the photomicrograph of amyloid substance stained with Congo red and (b) is the cross polarization of tissue with polarizing microscope: note the apple 616 green, faintly refractile (birefringence) of the amyloid fibrils substance present in the sections of decalcified bone (spherulites/liquid crystalline structure). Chapter Four (4) Histopathology techniques in neurology (staining properties) (Kiernan et al and Bancroft et al) I n the past due to numerous histologic staining methods used in histopathology and histotechnology in science of neurology confusion existed, however today several more reliable techniques have been introduced in histotechniques to overcome the drawbacks of conventional histochemical staining methods. These new generations of tests are known today as immunohistochemical staining methods. Diseases such as dementia, amentia, and neurodegenerative diseases routinely are investigated in pathology laboratory to diagnose these pathologic entities therefore I will explore these abnormalities with a short description. The approach will be a general definition of tissue processing, staining and petite elaboration of neuropathological states as would be a part of the histology texts. regard silver impregnation techniques in neuropathology is a cliché method in comparison to immunohistochemistry nonetheless is still considered an elaborate and invaluable procedural tool in histotechnology of nervous system and used in many labs. In this Gold toning with gold chloride added in some times in the past to silver nitrate staining methods still is a common techniques employed in this method for nervous system staining (Formmann -1864 and Ranvier 1868). Metal impregnation however is a strong tool in the hand of histotechnologist for microanatomical investigation into neurological pathology. A short description of the nervous system as far as it is needed to impart these ideas to histotechnology will be covered and will be reviewed and warranted in here; Nervous system mainly composed of neurons, which is the single cellular unit of nervous system, neurons are divided into 3 main aspects, 1) is the body cells, 2) dendrite, and 3) axons. As will be briefly elaborated, these are constituents of the nervous system. The cell body is the cellular dimension of neurons as it is composed of cytoplasm, nucleus, pigments, inclusion bodies and Nissl granules. Nissl granules are in fact the RNAs resides on the rER (rough endoplasmic reticulum) in the cytoplasm of the neurons. Due to its acid nature RNA would be studied with basic dyes and demand to be stained by basophilic stains such as basic dyes, including the followings: neutral red; cresyl-fast-violet; toluidine; thionin; pyronin and methylene blue (for vital staining). The following terms applies to cell body and its contents at normal and abnormal states: chromatolysis apply to the dislocation of Nissl granules from its normal nuclear periphery to surrounding cytoplasmic periphery, which is an abnormal phenomenon, other inclusions such as pigments: i.e. neuromelanine and lipofuchsin are found in the cell body along 617 with substantia nigra and lipofuchsin can be found in old age individuals respectively. With spanning to dendrites and axons, dendrites are ramified extension or processes of the cell body as divisions so as to receive electric signals from the axon of another neuron(s) passing the signals through cell body’s fibers toward cell body axon. The junction between axon with other axons or dendrites are connected by means of a space called” synaptic cleft”, where the electric signals transforms to chemical signals by means of neurotransmitters. Along the axon-fiber exists the Schwann’s cells and myelin sheet with connecting node called “node of Ranvier”. The axons and dendrites (neurofibriles) are coated with myelin sheet and Schwann’s cells, which breaks at the node of Ranvier. In a neurodegenerative disease such as Alzheimer neurofibrillary plaques and tangles forms and it occupies and affects all internal cell body fibers along with external fibers with deposition of amyloid substance. After this brief anatomic and pathophysiology of the nervous system comes tissue processing and staining techniques for Nissl granules and neurofibrillary materials. These include techniques as H & E method with routine tissue processing (vide supra). This may be Van Gieson staining method which are popular and demonstrate a crispy cytoplasm. Vascular changes as well as advantages of staining the myelin sheet are satisfactory. Quality of staining and detection of Nissl granules staining techniques as mentioned above as with other staining techniques depends on factors such as temperature of the reaction, PH of the surrounding, the duration or length of differentiation in regressive staining of these tissues. As with staining the anterior horn of the spinal cord as one of the main part of the CNS, it may stain by the above (stains for Nissl) stains. In addition the nervous tissue fixed with alcohol may be stained particularly well with thionin stain. Figure 4-1, indicates anterior horn of spinal cord staining (vide supra). This structure is rich in Nissl granules. Fig. 4-1: Anterior horn of spinal cord with silver staining: note the dorsal root gangilion. The following Creysl-fast- violet stain procedures and method is for paraffin sections: Staining of Nissl granules with cresyl-fast violet: Procedure Nissl substance staining Nissl granules are distributed in the cytoplasm and dendrites of neurons. Nissl granules can be demonstrated with many basic dyes: Neutral Red Methylene Blue 618 Toludine Blue Cresyl Fast Violet Staining with Cresyl Fast Violet Depending on the pH level of the cresyl violet stain and the extent of differentiation, this stain is able to highlight Nissl substance only or include the nuclei of neurons and glia. Method for Fixed/paraffin embedded tissue Cresyl Violet Solution Cresyl Fast Violet 0.025gm Distilled water 100ml pH to 3.8 with Glacial Acetic Acid If using cryostat sections, fixed in 10% Neutral Buffered Formalin for 5 minutes before staining. There is no need to dewax! Dewax slides and bring to water Place sections into cresyl violet acetate solution pH3.8 at 37ºC-10 minutes Differentiate in 95% ethanol Dehydrate, clear and mount in DPX Note: Cresyl Violet Acetate and Cresyl Fast Violet ARE THE SAME. Results: Nissl Granules-Purple In immunohistochemistry cellular markers in tissues can be utilized for immunohistochemical stains, these can differentiate neuroendocrine tissues on the basis of immune-reactivity with the corresponding antibodies. Some of these markers include: first the normal cytoskeletal proteins such as NF 70 (L), and or NF150 (L), etc. these markers are filaments specifically to nerve cells with their corresponding antiobodies. The second group of markers is named cytoplasmic specific protein for nerve cells such as PGP9.5 and the neuron specific endolase (NSE), this marker is not solely specific for nervous tissue. The third groups of markers are neurosecretory granules associated proteins, (i.e. as chromogranin and synaptophysin), these are associate with neurosecretory granules and synaptic membranous glycoprotein respectively. Antibodies to these markers are well distinguished and are available for immnuohiostochemstry by several manufacturers. In regard to axons and dendrites there are some specific immunohistochemcial staining methods as Bielschowsky’s silver nitrate staining for the neuronal processes. This method uses ammoniacal silver nitrate solution (vide supra). The Palmgren’s method is primarily used to staining the axons of the peripheral nerves (palmgren-1948). As with degenerative nerve fibers, we have formalin fixed specimen with uranyl nitrate before impregnation with silver nitrate in an alcoholic solution treatment: this is for detection of plaques and tangles in Huntington’s disease and Alzheimer’s disease. The method use this treatment includes silver nitrate staining as in Eager’s staining technique. Degenerative axons also may be detected by teased fibers: these fibers may appear in cluster of gray to black globules. Nerve fibers may also stain by vital staining with methylene blue as similar to other tissue vital staining. With addition to myelin staining, the myelin is formed from oligodendrocytes and Schwann’s cells in CNS (central nervous system). Myelin is made up of cerebrosides and lipids. A good example chemical staining method for myelin staining may be Weil’s method for myelin staining as a candidate. This is a hematoxylin technique at the end. Still with oligodendrocytes (of nervous system) as mentioned earlier are located in the white matter of the brain and are myelinated, for this we can make use of the 619 staining properties of Penfield’s combined method for oligodendrocytes and microglial cells as well. With other parts of nervous system such as staining for microglial cells, ganglial cells and astrocytes (majority are located in the cerebral cortex/gray matter) which are the supporting cells of the CNS (Central Nervous Sysytem), we have Cajal’s gold impregnation and staining (as in Cajal’s gold sublimate) method. These cells are important in neuropathology for their malignant and benign tumor forming capacity. Another stain for supporting cells is PTAH (Phosphotangstic Acid Hematoxylin stain) for astrocytes recovery in the tissue sections. Figure 4-2 presents astrocytes stained with PTAH. Fig. 4-2: Cajal’s gold impregnation and staining of astrocytes as stained black, more details in the text (vide supra) The following is the procedure for astrocytes: Cajal staining Astrocytes: Cajal Stain Purpose of the stain: The demonstration of astrocytes. This method has been replaced to a great extent by immunohistochemical procedures. Principle of the stain: Astrocytes are selectively stained with the Cajal gold sublimate method on frozen sections. Fixatives: Formalin ammonium bromide for no less than 2 days and no more than 25 days. If the tissue has been fixed originally in 10% Neutral Buffered Formalin, wash and place in formalin ammonium bromide for 48 hours before proceeding with the technique. Sectioning: Cut frozen sections at 20-30 microns. Do not pick up on slides; the section should be free-floating for this technique. Tissue will section better if washed in tap water for 30 minutes before freezing. Controls: Use a section of cerebral cortex (not spinal cord) for the demonstration of astrocytes. Reagents: 1. Formalin Ammonium Bromide: Ammonium bromide, Formaldehyde 3740% & Distilled water. 2. Gold Sublimate: 1% Gold Chloride, 1% Mercuric chloride & Distilled water. 3. 5% Sodium Thiosulfate (Hypo): Sodium thiosulfate & Distilled water. Procedure: 1. Wash the free-floating frozen section in several changes of distilled water. 2. Transfer the sections to gold sublimate solution, and leave in the dark for 4 hours. The sections should be purple. 3. Wash well in distilled water. 4. Treat with 5% Sodium thiosulfate for 2 minutes. 5. Wash section well in several changes of distilled water. 6. Carefully mount the sections on slides, blot with bibulous paper, and dehydrate in 95% & 100% alcohols. 620 7. Clear in xylene and mount in synthetic resin. consult one of the references cited at the end of this section. Results: Astrocytes with perivascular feet….……………………………………… …………..Black . Looking into dementia and amentia: they occur mostly in neuronal degenerative diseases as Huntington’s disease or Alzheimer’s. Dementia is classified into three types: 1) vascular dementia due to cerebral infarcts, 2) dementia due to presence of Lewy bodies or known as “cortical Lewy bodies”, this happens in Alzheimer’s and possess cerebral-cortexinclusion-bodies, the cortical Lewy bodies is the term applied for this condition, and 3) dementia of frontal and temporal lobes with neural loss in these anatomic areas. For Alzheimer’s silver nitrate impregnation as in Bielschowsky technique is superior although underestimates amyloid in sections. Immunohistochemistry may help to obtain and catch up with these histochemical staining shortcomings. Neurofibrillary tangles and plaques may be demonstrated with application of thioflavin-S method: in this we use fluorescent dye(s). Still with neuropathology staining, modified Bielschowsky has good application. Other staining methods such as methanamine silver staining for the detection and presence of amyloid substance may be used however detects few tangles, but is not tangle sensitive. At this end I suggest for the detail coverage of the topics in regards to specimen handling, organ cutting and preparation as brain, spinal cords and peripheral nervous system biopsies and processing Neuroendocrine staining and related stains (Kimura et al and Soga et al) The neuroendocrine system Neuroendocrine system is a diffused system of endocrine glands and nervous system. This system is composed of vesicular membrane glycoproteins in nature that facilitate inter and entracellular communications. This is accomplished through an organized system of glandular tissue organs and nerve cells. Most common organs and tissues involved in the process and in endocrine system are classified as skin, brain, large and small intestines (enterochromaffin cells/EC serotonin stained with Masson trichrome), pancreas, adrenal glands, pituitary gland (hypophysis) and thyroid gland. Originally nerve fibers signal the electrical impulses in a space called “synaptic cleft” or pre-synaptic vesicular granules through chemicals known as “neurotransmitters”. The released substances now called neurotransmitters acts physiologically and functionally as signal conductors with amine or peptides in nature, i.e as tryptophan when decarboxylated to 5hydroxytryptomine or commonly known as “serotonin”. These neurosecretory peptides may be found in autocrine (exocrine) or paracrine (endocrine) glands distributed throughout in the above cited organs and tissues. Regulatory functions of neurosecretory granules glycoprotein peptides and amines are to coordinate and organize bodily functions and tissue 621 communications: this includes classical neurotransmitters of neuronal tissues. These tissues and organs are regulated by means of this collateral and mutual collaboration between nervous system and endocrine system. In this regards, the regulatory peptides and amines released form the neurosecretory vesicles inner membrane are distinguished and classified as the followings: 1) Amines, 2) peptides (as tryptophan), 3) chromogranin A, 4) synaptophysin, 5) NSE or NeuronSpecific Endolase, 6) GPG9.5 (or commonly known as protein gene product 9.5, and lastly 7) intermediate filaments [these classification has been mentioned in neuropathology section of this part five (chapter 4)]. Neuroendocrine cells sometimes used to be named as APUD or Amine Precursor Uptake Decarboxylation for they show L-Dopa and 5hydroxydecarboxylates and they produce serotonin and catecholamines. neurohypophysis secretory granules and its peptide products such as oxytocin and vasopressin (ADH/Antidiuretic Hormon) may be stained by the performic acid-alcian blue stain or technique. The modified Gomori-chrome hematoxylin and aldehyde thionin will stain these glandular product portions of neurohypophysis as well. As in the adenohypohysis stains such as PAS and OFG (orang G acid- fuchsin green) differentiates acidophilic and basophilic cells in the pituitary (these are three types of cells: Chromophobe cells, acidophilic and basophilic cells, 1) acidophilic cells are GH and prolactine, 2) basophilic cells are thyrotrophs, corticotrophs and gonadotrophs, and 3) chromophobes are mixtures of the other two however show no cytoplasmic staining with a little differences. The stain such as MSB (Martius Scarlet Blue) will stain both acidophilic and basophilic cells with no differentiation. A cocktail of stains such as performic acid-alcian blue-PAS-OG The following endocrine organs and tissues have proceeding histochemical stains (such as silver nitrate techniques for neuroendocrine cells) characteristics/reactions. Pituitary gland consists of pars distalis, pars intermedialis, and pars tuberalis (or known as anterior, pituitary, stalk and posterior respectively). The gland is divided into posterior, middle and anterior portion, which are respectively called, adenohypophysis, stalk and neurohypophysis. With adenohypophysis we have secretion of peptide hormones such as, GH, FSH, LH , TSH, ACTH, and prolactin (for detail refer to clinical chemistry section part one chapter in organ systems), Additionally neurohypophysis contains neuronal fibers originating from the hypothalamus through pituitary stalk to these posterior end of the gland. In (orang G) and carmoisine staining techniques may differentiate cells to basophilic and acidophilic class respectively. In this connection these staining are significant in detection of adenomas of the pituitary gland: these specific stains for somatotroph and lactotroph cells include acid stains and carmoisine erythrocin with positive results. As for corticotroph cells stains with PAS and bromine-AB (alcian blue) and finally the thyrothrophs and gonadotrophs cells are stained variably with PAS: these cited staining reactions embrace adenohypohysis portion of pituitary gland. Also pancreas (Soga et al) is named as a neuroendocrine organ it consists of endocrine (paracrine) and autocrine 622 (exocrine) cells. The secreting cells of endocrine cells are located in the “Islet of Langerhans” originating in B-cells or βcells producing insulin, as where A2cells or α-cells secreting glucagon and Dcells or delta cells or A1 cells/gamma cells making the somatostatin hormone. (Remember C- cells or colloidal cells are located in thyroid parafollicular cells/colloidal cells/ these are stained with Sevier-Munger technique: this tissue is engaged in making iodine for calcium production in situ). Somatostatin is produced and secreted by other endocrine organs or tissues such as brain, hypothalamus and pituitary. These hormones can be demonstrated by means of histochemical stains as silver (Ag) techniques (Grilmelius/ Rudbeck laboratory et al), or aldehyde fuchsin and or chrome- alum- hematoxylinphloxine. Immunohistochemistry may be used to detection of pancreatic hormones. The other organ which is an endocrine gland is the adrenal glands they contain neurosecretory cells busy making adrenaline and noreadrenaline hormones (refer to clinical chemistry part one chapter on organ systems). This has been discussed under neuropathology, etc. (vide supra) and in short this gland has made of chromaffin cells that stain with argerophil and argentaffin techniques. It is used for identification of tumors of chromaffin producing cells, these tumors are as; 1) pheochromocytoma (tumor of adrenal medulla), and 2) neuroblastoma (highly malignant tumor), this tumor originates from primitive neuroblasts. In this respect cartoid bodies and lung tissue are also both engaged in endocrine activity. Both have neurosecretory granular reactions. Tumors of carotid bodies such as paraganglioma and for lung, oat cell carcinoma may be differentiated on the basis of histochemical reactions and based on specific stains. Carcinoids (Soga et al) are tumors of a low grade malignant cancer like tumors/cancers arising from gut/intestinal tissues and rarely may derive from lung or other likely tissues these are benign and malignant tumors or neoplasms of endocrine system enterochromaffin cells which rise to carcinoid tumors was identified first by Kulchitsky in 1897, although they may be found in other tissues. The malignant carcinoids may metastasize to liver which this may release many amines and peptides in the systemic blood stream/circulation, NETs (Neuroendocrine Tumors) are incorrectly subsumed as carcinoids. This is called “carcinoid syndrome” with certain specific signs and symptoms. Figure below (Figure 4-3 shows neuroendocrine tumor (NET) and Squamous Cell Carcinoma (SCC) of the esophagus both in the same tissue section stained with H & E stain). Fig. 4-3: presents the neuroendocrine tumor & carcinoma (NET or NEC) on the left and squamous cell carcinoma (SCC/on the right) of esophagus with H & E staining reactivity. 623 For some of the staining options in neuroendocrine glands refer to chapter three (3) of this textbook part five. The following is two types of H & E staining techniques for an example, one regressive and the other is the progressive. Histology: Routine Hematoxylin and Eosin Staining The Progressive stain is shorter and is the most frequently used method on automated staining instruments. The Regressive stain is longer, uses an acidalcohol differentiator and is the most frequently used manual method. Progressive Method for Sections Xylene Substitute Xylene Substitute Xylene Substitute Absolute Alcohol Absolute Alcohol 95% Alcohol Regressive H&E Method for Paraffin Sections Xylene Substitute 3 minutes Xylene Substitute 3 minutes Xylene Substitute 3 minutes Absolute Alcohol 2 minutes Absolute Alcohol 1 minute 95% Alcohol 1 minute 70% Alcohol 1 minute DI Water 1 minute Hematoxylin* 6-8 minutes Tap Water 45 seconds Acid/Alcohol 30-45 (Differentiator)* seconds H&E Paraffin 3 minutes 3 minutes 3 minutes 2 minutes 1 minute 1 minute 70% Alcohol 1 minute DI Water 1 minute Hematoxylin* 2-5 minutes Tap Water 45 seconds Bluing Agent 30 seconds to 1 minute Tap Water 1 minute Tap Water 2 minutes Eosin Y 20-40 Alcoholic** seconds 95% Alcohol 30 seconds Absolute 1 Alcohol minute Absolute 1 Alcohol minute Xylene 1 Substitute minute Xylene 1 Substitute minute Xylene 1 Substitute minute * Use either Mercury Free Harris Hematoxylin, or Gill II Modified Hematoxylin, **Use Eosin Y Alcoholic, 1% PDC, * DI Water Bluing Agent DI Water Tap Water Eosin Alcoholic** 95% Alcohol Y Absolute Alcohol Absolute Alcohol Xylene Substitute Xylene Substitute Xylene Substitute Running Water 1 minute 1 minute 1 minute 2 minutes 20-40 seconds 30 seconds 1 minute 1 minute 1 minute 1 minute 1 minute Routine immunohistologic stains in Histopathology The first action in immunohistochemistry (IHC) is the preparation of the tissue and its fixation. Preservation needs a prompt and careful preparation with adequate tissue fixation. This must be sufficiently fixed so that does not affect subsequent procedures for antibody binding and conjugation. A universal fixation technique does not exist and in general paraffin fixation may be an ideal fixative. The development of antigen retrieval techniques and microwave treatment and availability of the corresponding antibodies are new way of 624 quality control of the process and may demand careful manipulation. The most common fixatives for immunohistochemistry include, 1) 4% paraformaldehyde in 0.1M phosphate buffer, 2) 2% paraformaldehyde with 0.2% picric acid in 0.1M phosphate buffer, 3) PLP fixative: 4% paraformaldehyde, 0.2% periodate and 1.2% lysine in 0.1M phosphate buffer, 4) 4% paraformaldehyde with 0.05% glutaraldehyde (TEM immunohistochemistry). Under normal conditions some antigens may be lost due to fixation or the processing even in a very small amount of aldehyde fixatives, therefore the tissue should be rapidly fresh frozen in liquid nitrogen (vide supra) and cut by the cryostat microtome without infiltrating with sucrose. The section must be kept frozen at -20°C or lower until fixation with cold acetone or alcohol. Subsequent to fixation, we may stain it with standard staining protocols with immunocytochemistry stains and procedures. The processing and sectioning may be done by fixation usually by formalin and conventional paraffin sections and impregnation for most antigens with the current date antigens retrieval technique. As mentioned some antigens may not process and survive by these normal fixations and paraffin sectioning and infiltration, thus can be done by frozen section however this methods has the following disadvantages: 1) Poor morphology 2) Poor resolution at higher magnifications 3) Special storage needed, and 4) Limited retrospective studies and cutting difficulty over paraffin sections. In this regards vibratome [definition – Vibrotome.com reference 21: A vibratome is an instrument that is similar to a microtome but uses a vibrating razor blade to cut through tissue. The vibration amplitude, the speed, and the angle of the blade can all be controlled. Fixed or fresh tissue pieces are embedded in low gelling temperature agarose. (Some have had success without using the agarose to embed..) The resulting agarose block containing the tissue piece is then glued to a metal block and sectioned while submerged in a water or buffer bath. Individual sections are then collected with a fine brush and transferred to slides or multiwell plates for staining/ Fig. 4-4 shows a contemporary virotome] may be used for some sectioning which as the advantages of no high heat required or no organic solvent is needed, these can destroy the antigen. In addition the vibratome will not affect the tissue morphology and in comparison with freezing it may prevent constant freezing and thawing of the tissue sections and thus help preservation of morphology. Vibratome sections are often used for floating immunostaining, especially for preembedding EM immunohistochemistry. The following are the disadvantages of vibratome: 1. The sectioning process is slow and difficult with soft and poorly fixed tissues, and 2. Chatter marks or vibratome lines are often appeared in the sections. part is whole mount preparation, this include small tissues sections (5 mm thick) as whole mount. The The last 625 advantage is that in whole mount the three dimensional information is possible without reconstruction from the section. The disadvantage may be: 1. antibody penetration may not be complete in the tissue, resulting in uneven staining or false negative staining Nevertheless the use of Triton X-100 or saponin treatment routinely for whole mount immunohistochemistry may enhance penetration of the antibody. Fig.4-4: A cryogenic equipment preparation for tissue sections, note the virbrotome in the photo operates on the bases of vibrating razor blade to cut tissues for fixed or frozen sections. More detail in the text. Immunohistochemistry uses the properties of antigen and corresponding antibodies to screen the tissue sections with application of conjugate stains as cited before in histochemistry. Tissue antigens of breast pathology and or neuroendocrine antigens (and other tissues/vide infra) and or neuropathologic proteins as protein gene 9.5 or chromogranin A or synaptophysin and intermediate filaments may be used as antigen and the antibody to these antigens. These can be conjugated to test system dye applied to tissue may specifically stains the target antigens of the labeled/stained tissue. These immunohistochemical markers may include the following tissues: breast, with markers such as estrogen receptors progesterone receptor; or liver as in CAM 5.2 (Cell Adhesion Molecule), AFP (alpha Feto-Protein), HBsAg (Hepatitis B Surface Antigen); or thyroid such as thyroglobulin (as in papillary and follicular); and calcitonin; and prostate as in PSA (Prostate Specific Antigen), PAP (Prostate Acid Phosphatase), Leu 7; or in ovaries with such markers as estrogen and progesterone receptors; or lungs as in CEA (Carcinoembryonic Antigen). In addition, colorectal antigens as CEA and CK20 (Cytokeratin for Bladder Cancer) are others, also other antigens such as the neuroendocrine and neurological markers cited above. Immunohistochemistry is accurate and sensitive in detecting the labeled antigen with antibody and on-going bases and has been utilized in histopathology for screening the antigens in the tissues sections. Breast antigens and marker such as cytokeratines and antibodies to these antigens are now routinely been used in breast pathology of many tumors and malignant masses in variety of tissues (which are non-epithelial in nature) such as synovial sarcoma, Schwannomas, glial tumors and malignant melanoma, and some lymphomas. Antibodies such as CAM 5.2 (Cell Adehision Molecule for Cervical cancers/Pan Cytokeratine) and AE1 (Anti Epidermis Antibody) and or AE3 (or 626 EMA/Epithelial Membrane Antigens), or breast specific markers also myoepithelial markers (Dewar et al. as examples S100 protein or antigen, basement membrane markers, or smooth muscle actin) may be used in detection of the corresponding antigens in the afflicted tissues: example consists of AE1 for epithelial tissues as breast epithelial tissues. The cocktail of these antibodies has usefulness in these detection systems. Other protein of interest specific for tissues is NSE [Neuron Specific Endolase (not specific for neurons)] and its antithetical antibody with other tissue antigens are purified and uses in detection of routine immunohistochemistry. The availability of these antibodies screening of cells and tissues are in wide practical with immunohistochemistry and so many of them has been recovered and manufactures by pharmaceutical industries, the list of these antigens are quite long and is out of the scope of this section. Figure 4-5 shows an epidermal adenosquamous carcinoma positive for cytokeratin by immunohostochemical staning with cytokeratin 7 antigen. Fig. 4-5: a positive cytokeratin in a epidermal adenosquamous carcinoma, note the squamous cell tumor with keratinization and gland formation in goblet cells (goblet cells show no staining in this silde with cytokeratin 7) and stromal response, the immunohistochemical staining with cytokeratin 7 shows a prominent staining of cytoplasmic and nuclear staining. These antibodies can be as well used in conjunction with enzymes and radionuclei and fluorescent techniques (as fluorescein dyes) to visualized specific tissues substituents and therefore detect and diagnose variety of tumors, malignancies and anomalies of the ablated tissues sections. Immunohistochemistry also make uses of enzymes such as ALP, ACP or ALT and AST (Alanine & Aspartate Aminotransferase) or hormones as FSH (Folicule stimulating Hormone), glucagon, etc. (such as the Immunoperoxidases/IPO). This is to investigate the histopathology of these tissue organs with corresponding hormone, cytokines, and lymphokines production in situ. The used of radioisotopes and radionucleotides (radiolabelled) is been utilized in such as settings. The use of cocktails or combinations of these methodologies has been warranted in tissues section screening and detection in immunohistotechnology and immunocytotechnology. For more detail and elaborate discussion of the immunohistechnology staining methods refer to external other sources or the references at the end. The following (table 4-1) list is an elaborate list of antigenantibody markers used in immunohistochemical and immunocytochemical staining (Bacroft et al): Table 4-1: the most up-todate immunohistotechnoloic 627 and immunocytotechnologic tissue marker in Pathology Alpha-1 c-erbB-2, Her monoclonal c-erbB-2, Her 2, (FISH) Breast Cancer CEA (Carcinoembryonic Adenocarcinoma, Antigen), monoclonal metastatic carcinoma unknown primary Histiocytic marker Antichymotrypsin, CD1a, monoclonal Thymic T-cells, thymoma, Langerhans cells CD2, monoclonal Lymphoma/leukemia typing CD3, monoclonal Lymphoma/leukemia typing CD4, monoclonal Lymphoma/leukemia typing CD5, monoclonal Thymic carcinoma CD7, monoclonal Lymphoma/leukemia typing CD8, monoclonal Lymphoma/leukemia typing CD10, monoclonal Lymphoma typing, metastatic carcinoma unknown primary CD15, monoclonal Lymphoma typing, mesothelioma vs. adenocarcinoma polyclonal Alpha-Synueclein 2, Breast Cancer Alzheimer Disease ACTH (Adreno Pituitary tumors Corticotrophic hormone), polyclonal Actin Muscle (HHF35), Smooth and Skeletal monoclonal muscle Actin Muscle, smooth, Smooth muscle monoclonal AFP (Alpha- Hepatoma, Germ cell Fetoprotein), polyclonal tumors ALK-1, monoclonal ALK-1 lymphoma Ber EP4, monoclonal Mesothelioma Adenocarcinoma vs B72.3, monoclonal Mesothelioma adenocarcinoma vs. BCL-2, monoclonal Lymphoma typing, soft tissue tumors CD20, monoclonal Lymphoma/leukemia typing BCL-6, monoclonal Lymphoma typing CD21, monoclonal CA19-9, monoclonal Metastatic carcinoma unknown primary Follicular cells, typing CA-125, monoclonal Mesothelioma adenocarcinoma CD23, monoclonal Lymphoma/leukemia typing CAm5.2 Adenocarcinoma CD30, monoclonal Lymphoma typing Calretinin, monoclonal Medullary thyroid carcinoma CD31, monoclonal Vascular differentiation Calcitonin, polyclonal Medullary thyroid carcinoma CD34, monoclonal Calponin Smooth muscle differentiation, myoepithelial cells Soft tissue tumor classification, leukemia typing CD43, monoclonal Lymphoma/leukemia typing CD45RB, monoclonal Recognition of lymphohematopoetic tumors C-Kit, monoclonal positive vs. CD117, Gastointestinal stromal tumors mast cells dendritic lymphoma 628 CD45RO, monoclonal Lymphoma typing (same as UCHL-1) CD56, monoclonal Lymphoma typing, neuroendocrine differentiation CD57, monoclonal Lymphoma typing, neuroendocrine differentiation CD68, monoclonal Histocytic/ myeloid/monocytic marker Estrogen receptor Breast cancer prognostic marker, metastatic carcinoma unknown primary Factor VIII-Related Megakaryocytic Antigen, polyclonal marker, endothelial marker Factor XIII-A-subunit, Dermatofibroma polyclonal DFSP Fascin, monoclonal vs. Hodgkin's Lymphoma FSH (Follicle Pituitary tumors Stimulating Hormone), polyclonal CD79a, monoclonal Lymphoma/leukemia typing CD99, monoclonal Soft tissue classification CD123, monoclonal Lymphoma/leukemia typing CD138, monoclonal Plasma Cells (also stains many epithelial tumors) Chromogranin, monoclonal Neuroendocrine differentiation Clusterin, monoclonal Anaplastic Large Cell Lymphoma HCG (Human Chorionic Choriocarcinoma Gonadotropin), polyclonal CMV (Cytomegalovirus), monoclonal Cytomegalovirus infection Herpes Simplex Virus Herpesvirus I and II Type I, polyclonal infection Cyclin D1, monoclonal Mantle cell lymphoma Herpes Simplex Virus Herpesvirus I and II Type II, polyclonal infection tumor Cytokeratin monoclonal 7, Metastatic carcinoma unknown primary Cytokeratin monoclonal 20, Metastatic carcinoma unknown primary Desmin, monoclonal Smooth and skeletal muscle differentiation EBER (ISH) Epstein Bar Virus E-Cadherin, monoclonal Lobular vs. Ductal breast carcinoma EGFR, monoclonal Sweat gland carcinoma, squamous tumors EMA (Epithelial Metastatic carcinoma Membrane Antigen), of unknown primary, monoclonal Lymphoma typing Epstein (CSI-4) Barr Virus Epstein Bar Virus Gastrin, polyclonal Gastrinomas GFAP (Glial Fibrillary Glial tumors, salivary Acid Protein), gland tumors monoclonal GH (Growth Hormone), Pituitary tumors polyclonal Glucagon, polyclonal Pancreatic tumors endocrine Hepar Hepacellular Carcinoma HHV-8 Kaposi Sarcoma HMB-45 Melanoma marker, angiomyolipoma IgA (Alpha Chains & Plasma Secretary subclassification Component),polyclonal cell IgG (Gamma Chains), Plasma polyclonal subclassification cell IgM (Mu polyclonal Chains), Plasma subclassification cell Plasma subclassification cell IgD Insulin, (GP) monoclonal Pancreatic tumors endocrine 629 Keratin, AE1 Epithelial Tumors Pax 5, monoclonal Keratin, AE3 Epithelial Tumors Keratin 903 Prostate marker Placental Alkaline Germ cell tumors Phosphatase, polyclonal Kappa light polyclonal chains, Plamsa cell clonality Ki67, monoclonal Proliferative fat cells fraction, Lambda Light Chains, Plamsa cell clonality polyclonal Laminin Skeletal muscle LH (Lutenizing Pituitary tumors Hormone), polyclonal Lysozyme (Muramidase), polyclonal Myeloid and histiocytic marker MART-1 Melanoma, adrenal cortical, sex cordstromal tumors Mast Cell Tryptase Mast Cell Tumors MLH-1 Colon Adenocarcinoma PMS2 B-Cell Lymphoma Colon Adenocarcinoma Progesterone Receptor, Breast monoclonal marker Prolactin, polclonal prognostic Pituitary tumors PSA (Prostate Specific Prostate marker Antigen), monoclonal Racemase Prostate marker S100, monoclonal Spitz nevus Seratonin, monoclonal Carcinoids Somatostatin, polyclonal Pancreatic tumors Spirochete Spirochete Synaptophysin, monoclonal Neuroendocrine differentiation TCRbf1 Lymphoma typing TIA-1 Lymphoma typing endocrine MLH-2 Colon Adenocarcinoma TDT Lymphoma/leukemia typing MLH-6 Colon Adenocarcinoma TTF-1 Myogenin, monoclonal Rhabdomyosarcoma Lung & thyroid marker, also some neuroendocrine Myosin Skeletal muscle Thyoid carcinoma MUM-1, monoclonal Lymphoma Marker Thyroglobulin, monoclonal Myeloperoxidase Acute Leukaemias N-Cadherin Metastatic caricnoma unknown primary Neurofilament 160 Neural tumors (NN18), monoclonal NSE (Neuron Specific Pancreatic Enolase), monoclonal tumors endocrine p16 Cervical dysplasia (correlates with high risk HPV) p53, monoclonal Breast Carcinoma Pan Keratin AE1/AE3 Epithelial Tumors Parathyroid Hormone Parathyroid Tumors (PTH), polyclonal TSH (Thyroid Pituitary tumors Stimulating Hormone), polyclonal Vimentin, monoclonal Metastatic Carcinoma Unknown Primary *The source of the list: The Histology and Immunohistochemistry Laboratory Department of Pathology, The University of Texas Health Science Center at San Antonio 630 Immunohistochemistry staining and markers (IHC) of Lymphomas There are two broad classifications of lymphomas by WHO (World Health Organization) with the lymph-node involvement. The first classification is Hodgkin’s Lymphoma (HL) and the second classification is non-Hodgkin’s lymphoma, Chapter under lymphoproliferative disorder has cited both of these lymphomas in part two of diagnostic hematology in this textbook however we will consider these topic on the bases of immunohistochemical staining which had been partly included in diagnostic hematology section. WHO further classify Non-Hodgkin’s Lymphoma (NHL)/ (Martin et al) according to the maturity (differentiated) and immaturity (undifferentiated) of the cells lines and the lymphatic tissues itself (cells of origin) using the basis either on immune cells such as T cells, B-cells and or Natural Killer Cells (NK). As with specimen collection and transport we have to understand the correct handling of the specimen in the laboratory on its arrival in the laboratory. This is crucial to successful sample reporting. Although many diagnoses can be reached using routinely processed tissue, ancillary tests are essential for some diagnoses such as Burkitt lymphoma. Tissue Fixation: Lymph node specimens larger than 0.5 cm in diameter need to be sliced on arrival in the pathology department, this allows proper fixation. The tissue sample in paraffin blocks must be 3 mm thick. If possible, one section should be placed in each cassette since multiple pieces make immunostaining more difficult. We should be certain that the slices of lymph node remain flat, incorporate sponges into the cassettes to help prevent folding. The blocks need to be fixed for 24-48 hours; less than this leads to poor preservation of cytological detail and can make the tissue uninterpretable. Standardization of fixation makes immunochemistry more reliable, since heat and protease recovery time will be similar. Prolonged fixation makes immunochemistry more difficult and recovery of DNA (Deoxy Ribonucleic Acid) from paraffin blocks unreliable for cytogenetic and molecular studies. Flow Cytometry If the sample is to be analyzed promptly, a dry fresh sample should be provided to the appropriate histotechnology laboratory. If this is not possible due to transport times, consideration should be given to disaggregating and fixing the sample prior to transport for analysis. Bone marrow aspiration and trephine biopsy Bone marrow aspiration is useful for morphology, FC (Flowcytometry), PCR (polymerase Chain Reaction), FISH (Fluorescent In Situ Hybridization) and occasionally conventional cytogenetic analysis if no lymph node material is available. In spite of aspiration, the value of bone marrow trephine biopsy in the diagnosis and staging of lymphoma is well established (Bartl, et al, Burkhardt, et al, Munker, et al). The trephine biopsy core can preferably be taken from the posterior iliac crest with multiple sections taken from various dimensions. As in collection and preparation of bone marrow trefine biopsy the sample should be collected into 4% formalin as this fixative allows the subsequent use of most staining and 631 molecular techniques (Le Maitre, et al). The sample may then be stored for 72 hours or more before preparation, sufficient for samples to be posted to the reporting laboratory where necessary (Krenacs, et al). Subsequent preparation will depend on the preferred method of the laboratory. Bone marrow trephine (Beakstead et al) sections should always be stained with H & E and with a reticulin stains; a Giemsa stain can also be helpful. Each slide should be examined initially for cellularity, the trephine core being the best sample for assessing this. Light microscopy alone cannot be relied on to distinguish nonneoplastic follicles or lymphoid hyperplasia from lymphoma infiltration. However, it is possible, when no other tissue is available, to diagnose lymphoma solely based on a trephine biopsy specimen, provided the appropriate immunostaining protocol. In this regard, immunostaining should be requested as a panel of antibodies rather than individual tests so appropriate comparisons can be made. It can be performed by FC, (Flowcytometry) which readily identifies single cell populations. Paraffin/ plastic section immunochemistry has the advantage that the histologically abnormal cells can be seen to express or lack a particular marker as in phenotyping. If all tissue blocks are similar, immunostaining needs to be performed on one block only, otherwise blocks need to be selected to demonstrate all suspected diagnoses in a patient; i.e. the presence of diffuse large Bcell lymphoma on a background of follicular lymphoma. When selecting panels for immunohistochemistry and immunocytochemistry it is important to include antibodies that are expected to give negative as well as positive results. In addition, lymphoma diagnosis may be made from a number of different specimens depending on the presenting clinical features. Histotechnologist in the histology laboratories may expect to receive lymph nodes, bone marrow aspirates, trephine biopsy cores and peripheral blood for processing of tissue block and section for diagnosis by the pathologist as well as other fluids such as Cerebrospinal Fluid (CSF), ascitic fluid and pleural aspirates. In other hospitals, tissue samples may be received by the cellular pathology department. The number of pathological tests needed for the precise diagnosis and classification of hematological malignancies means that whole lymph node samples are preferred, rather than needle cores or Fine Needle Aspirate Biopsy (FNAB) cytology. Core biopsy is useful in the diagnoses of tumors which are not accessible such as those in the retroperitoneum but the diagnosis of tumors where the architecture is important, especially low grade Non-Hodgkin Lymphoma (NHL) (Martin et al) and Nodular Lymphocyte Predominant Hodgkin Lymphoma (NLPHL) can be difficult from these samples. The easiest way to achieve ideal/optimal results is to arrange for lymph nodes to be immediately submitted fresh to the laboratory. This allows not only collection of fresh tissue samples for immediate analysis, but also optimum fixation for paraffin/ plastic embedding and processing, and the preparation of imprint cytology specimens (for detail tissue processing refer to the beginning of the chapters 3 & 4). Staining with different immunochemical stains and conjugation with different batteries of antibodies may help visualization of the tissue labeled/tagged sections. As mentioned in the previous section the markers and antibodies are cited in the long comprehensive list for different tissues. 632 In general on the level of tissue anatomic alteration and pathology these may consist of change in morphology of the lymphocytes or the affected cells of nodal origin from normal tissue structures such as B-cell follicles, mantle or peripheral tissue textures or on T-cells intra-follicular region or sinus zones. All aspects of cell morphology may be considered in this so that a correlation may be made to diagnosis, such as cytoplasmic texture and inclusions or nuclear appearance, pigments and cytoplasmic and nuclear chromatic appearance may be clue to the right diagnosis. Parameters such as cell size as large or small or polychromatic or monochromatic cell population may be used in diagnosis as well. The occurrence of the proliferation is generally due to arrest of differentiation stages of cell and subsequent proliferations at different stages of development. In immunohistochemistry of the lymphomas we chose a panel of markers based on morphologic differential diagnosis (no single marker is specific): these consist of Leukocyte Common Antigen (LCA), B-cell markers (CD20 and CD79a), T-cell markers (CD3 and CD5/cluster of differentiation 3 & 5) and other markers etc. The beginning IHC panel may include antibodies against/to B-cell (CD20) and Tcell (CD3) antigens; κ and λ light chains (if numerous plasma cells are present); and D45, CD15, and CD30, this is when large dysplastic cells are seen. Based on morphology, if there is changes/alteration of B-cell zones, antibodies against some of the markers as CD5, CD10, CD23, etc. could also be useful primarily characterize the staining process for identification. If interfollicular areas expanded and a T-cell lymphoma is a consideration, antibodies against CD2, CD4, CD5 and some other may identify the subset distribution and if pan–T-cell antigens are abnormally lost (US-Canadian division of international academy of pathology). B-cell and T- cell markers and follicular dendritic cell markers can distinguish conditions such as T- cell and B-cell leukemia, T-cell and B-cell lymphoma, or small cell carcinoma and urothelial carcinoma and rarely endometrial and breast cancers. Angioimmunoblastic T-cell lymphoma may be a cause of follicular dendritic cells proliferation. With regards to Immunohistochemistry staining procedures is less sensitive than flowcytometry, due to FC accurate and precise identification and sorting of tissue and cells. The immunoglobulin light chains may be stained to differentiate abnormal clonal cell populations. Hodgkin’s Lymphoma (HL) is diagnosed by screening for Reed-Steenberg cells (RS)/(refer to diagnostic hematology chapter on lymphproliferative disorders, part two of the textbook). The parameter to consider is the cells, inflammatory background and immunophenotyping of the RS cells. Figure 4-6 shows Reed-Sternberg cells stained with immunocytochemical stains in diagnosis of HL. 633 1. Solving common diagnostic dilemma, 2. Tumor typing and subsequent diagnosis, and 3. Analysis of prognostic markers, i.e. ER (erstrogen). Therefore I will expand the idea of immunstaining of tissues of some classes of breast pathological entities with their relevant antigens and antibodies utilized in here further below, the examples are (I start with fist category the dilemma): Fig. 4-6: Reed-Stenberg cells (four at the center) in Hodgkin’s lymphoma by H & E staining with 400x magnification, the section has been treated with immunochemical stain for CD30 positive: source lung tissues. Immunohistochemistry staining and markers Breast pathology of 1. Benign tumors vs. malignant tumors, 2. Epithelial proliferations, and 3. In situ vs. microinvasion. The second one tumor typing may be divided into the following types: 1. Typing of tumor (e.g. ductile vs. lobular, or basal vs. myoepilthelial), 2. Metastases of lymph-nodes, and 3. Demonstration of epithelial cells in necrotic materials, and others, etc. (Dewar et al & Bancroft et al) It is clear that H & E staining of the breast tissue section although would be reliable for the diagnosis nevertheless the diagnosis could not be based solely upon it. However one of the new although accurate and precise methods of diagnosis of breast pathology may be obtained from immunohistochemical evaluation of breast tissue or acquired breast cells in immunocytochemistry (we will not focus in here on immunocytochemistry). Immunohistochemical approach can respond to the queries that might arise from H & E staining. The main purposes of the immunhistochemical staining are: The third category analysis of prognostic markers (i.e. ER) 1. Receptor studies and assessment of these such as ER/PGR and Her-2 receptor(s) 2. FISH testing for Her-2 (This will not be covered as being solely a clinical genetic specialty). There are several antigens as list continues to expand we may have the category of immunostains to use in immunohistochemistry and breast pathology which are popular in approach, these are (with many others have been cited later): 634 1. Myoepithelial markers (CK 5 & 6 and P63)/ these are benign in orign), 2. Lobular vs. ductile (as Cadherin) and, 3. Receptors such as ER (estrogen), PGP and Her-2 receptors. For the above details refer further below (vide infra). We receive some different specimen and tissue types of breast tissues sections in histothechnology lab for breast pathology these include, preoperative specimen as FNAB and core biopsy, and the next are the operative tissue specimen such as excision biopsies, mastectomies and lymph-nodes. Investigation may be carried out for benign and malignant lesions such as fibroadenoma or other fibroadenoma tumors, also papilloma, or inflammations, abscesses, necrotic foci, radiation injuries or mammary duct fistula, or so on; for malignant lesions with grading (cancer in situ) we have ductal and lobular carcinoma in situ (not invasive), invasive carcinoma, invasive lobular and tubular carcinoma, and invasive mucinous carcinoma (MUC-1). As with fibromatosis, immunohistochemical staining uses for core biopsy include beta-catenin which is supportive for diagnosis. Staining may be patchy: for differential diagnosis a positive result with beta-catenin which may be positive rarely and uncommonly in differentiation of malignant tumor types. This can be found positive in fibromatosis. To detect myoepithelial cells in the mammaries we utilize immunostain markers of high specificities and sensitivities such as smooth muscle myosin heavy chains and calponin P75, P63, Pcadherin, basal cytokeratin, maspin and CD-10 these antigens may be detected with corresponding antibodies with an ease of interpretations: these markers may be positive or negative in carcinoma in situ. These may cross react with reduced expression of myoepithelial cells in borderline conditions as with in situ carcinoma (Dewar R. et al). As mentioned earlier myoepithelioma markers are benign in origin and may be distinguished by such immunohistochemcial marker as cytokeratin 19, 18 and 8 are diagnostic (vide infra). Immunological and histochemical markers for staining methods such as cytokeratins (19, 18 and 8) can be found in epithelial tumors these antigens may have antibodies such as CAM 5.2, AEI and AE3 etc. these can be used in such conditions as myopithelioma of breast and these cytokeratins may as well be found as a result of cross reactivity with non-epithelial derived tumors [as cited in routine immunohistologic stains used in histotechnology and histopathology section under this chapter (4)]. Nonetheless, other markers such as epithelial membrane proteins (EMP/ its use have been reduced during recent time) may provide a good diagnostic decision in adenocarcinoma (Fig. 4-7) and shows positive expression. Antigens such as breast specific markers as Gross Cystic Disease Protein Fluid 15 (GCDPF 15) is found in fibrocystic changes as well and is an excellent marker for detection of such changes. Still with other antigens we may include Smooth Muscle Actin (SMA) and S100 protein. SMA may be detected in skeletal muscles, smooth muscles and cardiac muscle. For S100 protein which is detected in variety of tissues tumors such as 635 schwannoma, epithelioma (islet of Langerhans cells of epidermis), melanoma, also in heart muscles, chondrocytes and lipocytes and histiocytes, this marker can be used in breast pathology as well as in other tissues and may be detected and originate in breast tissue sections afflected with the corresponding tumors or conditions. Other antigens of importance are calponin, caldesmin, cytokeratin 14 and 5, caspin, and P-cadherin. Basal membrane proteins or components such as laminin or collagen IV with their correspondent antibodies may be utilized in investigation of differentiation in situ epithelial tumors versus invasive carcinomas, these are positive in former condition due to possession of intact epithelial membrane (in situ). In addition neuroendocrine markers, neuronal specific antigens and proteins (markers) including other markers as chromogranin A and sypatophysin that had been cited in the previous preceding sections may play a significant role in detection of these type tumors of breast and its pathology (vide supra/Bancroft, et al.). Fig. 4-7: presents Epithelial Membrane Antigen (EMA) staining of a case of adenocarcinoma of the breast in a tissue section. In respect to the above markers I have to explain little about the MUC-1 a glycoprotein (or MUC 2 & 3 & 8 and mucinous carcinoma), as a mucinous marker, we have a molecule such as epithelial membrane mucins (MUC2/glycoproteins, etc.) which once present can be an indication of mucinous carcinomas of mammaries. These are trans-membrane proteins that are the components of breast and other epithelial cells that produce milk during lactation. These may be mucins present in glandular epithelial cells and mucins detections with corresponding antisera led to the discoveries of antigens such as EMP, MM or PEM (Polyepithelial Mucins) and episialin. These mucins have thought to be produced in the breast glandular epithelial cells. These MUC-1 glycoprotein and their 20 amino acids core antibodies (prepared antisera) may bind to the breast cancers antigens showing homology. Therefore MUC-1 and other mucins may play a role in breast cancer pathology. Other antigens of interest may be growth factors and their receptors: such as epithelial cell growth factors (EGF/a Epithelial Peptide Growth Factor) which may function as autocrine or juxtacrine growth factors in breast epithelial cells and are regulated by estrogens (as a hormone). Tyrosine kinase growth factor receptors such as Her-2, Her-3, etc, have been found to play role in breast cancer and its induction as well. Therefore may be used in breast cancer detection (the list of markers mentioned in early this chapter may be used to investigate some of the tumor markers mentioned in this section.). 636 Histochemistry by enzyme applications (Beckstead et al & Burstone et al) It is currently becoming popular and mandatory to study major part of the tissue block or sections arriving at laboratory by stains with either enzyme application in histotechnology or immunohistochemical stains however still tissue processing such as fixation, dehydrating, clearing and impregnation with paraffin or MMA and GMM has important applications in histopathology. With this application (paraffin impregnation) we can use enzyme or immunstains. With enzymes processing it still would be similar to doing fixation of the slide or the tissue with formalin and applying alcohol or acetone for dehydration and clearing along with impregnation with paraffin, MMA or GMM. The sections that are 2 micron thick (depending on the type of tissue) must be incubated at 4°C with peroxidase, or naphthol AS-D chloroactetate esterase, alpha naphthol butyrate esterase (positive in myelomonocytic, monocytic leukemia and weakly in megakaryoblastic leukemia/ these are specific and non-specific esterases respectively) and alkaline phosphatase (ALP) or acid phosphatase (ACP) with ancillary reactions. This may be used to investigate for different purposes such as hematologic and other cancers or leukemia. In 48 hours the result will be investigated and read according to the protocol. This method can be used in focal lesion studies of bone marrow such as inflammation and neoplasia or similarly myelofibrosis of the bone marrow may show increase number of alkaline phosphatase. Other enzymes may also be used aside from the above enzyme to detect other disorders (Beckstead. JH et al.). In regard to enzymatic methods we also can make use of aceytlcholenstarease enzyme E method in fresh frozen section to localize the AchE in the neuronal tissues. Development of techniques in enzyme histochemistry would enable the pathologist to search for the correspondent enzyme in the tissue sections and observe their distribution pattern and their localization in a particular tissue biopsy. The aim of enzymes histochemistry is to study the effects of various substances as enzymes by the aid of enzyme labeling of different tissues to study their effects on the cellular and tissue level. Respectively enzymes such as horse reddish peroxidase may be substituted in enzyme-histotechniques for fluorescein in immunohistochemistry. For the definition and pathophysiology of enzyme refer to clinical chemistry section part one of this textbook. Classically enzymes are divided into six classes: 1) oxidoreductase, 2) transfereases 3) hydrolases, 4) lyases, 5) isomerases, and 6) ligases. And majority of enzymes lay under these categories. The following factors may influence the demonstration of enzymes in tissues: 1) temperature, this is important for localization of each enzyme and may need special attention to the enzymes surrounding temperature, 2) PH of the surrounding, 3) inhibitors, these may block the enzyme activity, 4) activator, this may promote enzyme activity, and 5) circadian rhythm: seasonal and daily variation in enzyme amount may eventually affect the localization and its detection. As for detection of enzymes, fresh frozen 637 sections are ideal for localization and preservation of such substances. Specimen preparation In here there may be no optimal fixation preparation for each particular enzymes and tissue may be processed either as fixed or unfixed fresh frozen or paraffin embedded according to some tissue sections and staining protocol. Since enzymes are sensitive and denaturable by heat and fixatives the idea of fresh frozen sections may warrant. In these, unfixed frozen sections have their own disadvantages as diffusion of enzyme, cofactors and activators from their initial site in the tissue. This may cause false interpretation of results either false positive or false negative. The preparation and cutting may be done by cryostat microtome as like other tissues and other procedure mentioned earlier. The freezing may accomplish either by cryostat freezer or liquid nitrogen or isopentane (this is particularly good for muscle tissue). Aside from fresh frozen sections for preservation and detection of soluble enzymes we need to be aware that this may show diffusion artifacts. In this method there is less progressive enzyme loss. The disadvantage of this method (fixed sections) is deactivation of the target enzyme and dissolution of certain enzymes in the fixative. In some method prefixing or post fixation of the tissues in cold formal calcium prior to or after cryostat may necessitate. Frozen sections finally may be method of choice and tissue may be picked on slide and stained on coplin jar. The blood or bone marrow fixation with formal-methanol and or citrate buffered acetone solution may be used for slide fixation and tissue section preparation along with controls to track false negative or false positive reactions (due to enzyme diffusion and delocalization or splitting of activator or the possibility of presence of inhibitors). The most common enzymes used in enzyme histochemistry are: alkaline phosphates (ALP/tissue and smears), acid phosphatase (ACP/tissue and smears), ATPase (Adenine/-nosine Triphosphatase, aminopeptidase, phosphorylase, G6PD, succinic dehydrogenase, peroxidase, NADHase (Nicotinamide Adenine diphosphatase), NADPH along with naphthol AS-chloroacetate and alpha naphthol butyrate esterase. The difference between ACP and ALP is their PH differences while the reaction is typically similar (clinical chemistry section chapter and part one). I will explain few of these enzymes here with their specificities: the ALP can be found in areas such as brush border of convoluted tubular cells of the kidney and the brush borders areas of jejunum as well as blood and bone marrow also we have them in bladder, liver, breast, adrenal glands and ovaries. It can give a strong positive reaction (ALP) in bone tumors (such as Ewing’s sarcoma, osteogeneic sarcoma) or in monocytic leukemia and or leukemoid reactions Figure 4-8 shows staining pattern with ALP enzyme staining. As with ALP we can use TRAP method (Tartrate Resistance Alkaline Phosphatase) to screen for the enzyme. 638 and histiocytes stain positive with ACP staining method therefore may be used as control (there is no need of control for the test slide), this is used as a natural internal control. The purpose of enzyme staining include incubating medium pH 4.7 - 5.9 for ACP or 9.0 for ALP the positive enzyme site indicates inflammatory cells. Methyl green (methyl green, veronal acetate buffer) may be used as background counterstain. Sites of acid phosphatase activity will be red (indicates necrotizing or inflammatory myopathy). Background shows a green color. Fig. 4-8: ALP enzyme staining of bone tissue showing red as osteoclast with TRAP staining (Tartrate Resistant Acid Phosphatase), brownish red for chondrocytes and internal cell membranes stained with ALP immune-enzymatic staining and bluish green for nuclei with nuclear staining, this is a normal bone features. Equally with ACP, it is found mostly in disease originating from prostate such as prostate cancer or benign prostate hypertrophy (BPH) in these tissue sections. Some inhibitors such as low level tartrate, fluoride (uninhibited with formalin inhibitor) may affect the enzyme. These enzymes methods need to be used either by fresh frozen sectioning or by fixed tissue sections. Both demonstrations of ALP and ACP need the use of Azo dyes in tissues. The acid phosphatase stain indicates the presence of inflammatory cells in the biopsy as well; acid phosphatase is considered a marker enzyme for lysosomes. Muscle fibers in acid maltase deficiency also show an increase in acid phosphatase. Additionally, frozen sections of unfixed tissue are desirable. With regards to ACP, leukocytes As with the ALP we use this enzyme for detection of regenerating muscle fibers. Mechanism includes alkaline phosphatases hydrolyze esters bonds of orthophosphoric acid at alkaline pH (see above). After hydrolysis, the alcohol residue of the substrate (naphthol AS-BI phosphate) is reacted with fast red violet to produce a colored insoluble Azo dye (simultaneous coupling method): after the two coupling reaction (not cited) a red Azo dye forms. Equally with the sections there is no need of fixation (an unfixed) and a fresh frozen section is applicable. As with skeletal muscles staining we must have a positive and negative control sections because the blood and vessel walls have small amount of ALP in them. The stains may be done with Mayer’s or Harris’ hematoxylin. Site of enzyme activity shows pink to red colors with nuclei blue. As per NADH the enzyme may be used for demonstration of abnormalities in mitochondria, Z-band material and sarcoplasmic reticulum. With NADH enzyme a NADH diaphorase (a flavoprotein found in mitochondria to mediate conversion of NAD) staining techniques 639 may be used and the result for this method shows sites of enzyme activity to be a dark purple deposits. Z-band material, sarcoplasmic reticulum & mitochondria all react strongly with the method. Normal skeletal muscle shows a checkerboard pattern of type I fibers (dark purple) and type II fibers (light color). Architectural changes in muscle are indicated with this procedure including central cores, target fibers, nemaline rods and targetoid fibers. Central core disease is when the central area of the muscle fiber is devoid of mitochondria and oxidative enzyme activity however the peripheral zone is normal. The presence of many target fibers is diagnostic of a neuropathic disease process. Regarding the succinic dehydrogenase, this is to further identify the source of NADH diaphorase (sweat induction by this enzyme/vide infra as in flavoprotein) activity, because only mitochondria show positive SDH activity, this stain is used to demonstrate mitochondrial proliferation and to distinguish between oxidative and non-oxidative fibers. As for this enzyme (SDH) unfixed fresh frozen tissue sections are preferred. Staining for SDH do not need control sections as it has naturally an internal control. Site of ADH activity shows blue color and the only inclusions stained are mitochondria. In this regards oxidative type (I) and non-oxidative type (II) fibers show dark and light fibers respectively. As with naphthol AS-D acetate esterase a fresh frozen tissue or fixed cryostat sections may be cut and suited for preparation of the enzyme staining procedures: one of the enzyme staining mechanism include the enzyme may hydrolyze indoxyl acetate substrate to free indoxyl. This soluble product of enzyme hydrolysis transform into insoluble indigo blue dye. This indigo blue dye trandformation is attained by the addition of ferrocyanide or potassium ferricyanide oxidizers. This will result into indigo blue dyed tissue sections with good localization. The sources of enzyme include organs such as kidney and liver. This esterase contains in lysosomes of leukocytes and identifies granulocytes (eosinophils & basophils) to distinguish leukemia and granulocytic sarcomas found in acute myeloid leukemia known as chloromas. The enzyme hydrolyses esteric bonds (by esterase), they could be specific or non-specific. This esterase AS-D acetate is a specific enzyme and can be performed on paraffin sections (this is a rare enzyme capable of performing on paraffin embedding). As in alpha naphthol acetate esterase can react with pararosaniline to give an Azo dye reaction resulting into Azo dye color. For fixing the section we can use alcohol (methanol) or formaldehyde or EDTA for decalcified bone studies. Paraffin sections may be processed to the slide and dried overnight in an incubator or room temp. Subsequent to staining with hematoxylin the nuclei will be blue. The positive slide may indicate granulocytes, mast cells and myelogenous leukemic cells specific for myeloid series. The alpha naphthol acetate esterase (αnaphthol acetate esterase) is a nonspecific esterase stain is most useful for differentiating between different types (I & II) of atrophy (myopathy) and neurogenic atrophy (neuropathy); because in neuropathy denervated muscle fibers stain dark and in myopathy type II do not. Motor endplates as in neuromuscular junction and lysosomes in inflammatory cells are also 640 demonstrated. This enzyme hydrolyzes ester bonds and either specifically or nonspecifically. This can stain marcophages or histiocytes or other macrophages of organ and tissue interests such as microglial cells, or splenic and liver macrophages (i.e. kupffer cells) and lysosomes, etc. In Azo reaction the product of hydrolysis of alpha naphthol with diazonium salt will induce Azo dye as a dark red brown coloration in localizing tissue. Source of esterase activity may be found in kidney, stomach and jejunum and the liver. With ATPase, we may identify type I, IIA and IIB fibers and aids in classification of myopathies or neuropathic origin of this enzyme by this tissue marker. In short after several enzymatic and biochemical reaction to follow a visible black percipitate of cobalt-sulfide will be demonstrated indicating, presence of ATPase in the tissue section. The screening for ATPase need a fresh frozen unfixed tissue section cut by the cryostat application. The above procedure is PH dependent and the specific PH may indicate the specific type of the tissue enzyme. Last to mention is the modified Gomori trichrome stain uses for detection of pathological changes in muscles and connective tissues with a good staining properties of muscles and nerves system. Architectural alterations in muscle fibers such as nemaline rods or other changes can differentiate pathological inclusion bodies in the sarcoplasm (cytoplasm of striated muscle fiber). 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