Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 Contents lists available at ScienceDirect Palaeogeography, Palaeoclimatology, Palaeoecology j o u r n a l h o m e p a g e : w w w. e l s ev i e r. c o m / l o c a t e / p a l a e o Alpha and beta diversity of encrusting foraminifera that recruit to long-term experiments along a carbonate platform-to-slope gradient: Paleoecological and paleoenvironmental implications Sally E. Walker a,⁎, Karla Parsons-Hubbard b, Suzanne Richardson-White a, Carlton Brett c, Eric Powell d a Department of Geology, University of Georgia, Athens, GA 30602, USA Department of Geology, Oberlin College, 52 W. Lorain Street, Oberlin, OH 44074, USA c Department of Geology, University of Cincinnati, Cincinnati, OH 45221, USA d Haskin Shellfish Research Laboratory, Rutgers University, 6959 Miller Avenue, Port Norris, NJ 08349, USA b a r t i c l e i n f o Article history: Received 13 August 2010 Received in revised form 21 April 2011 Accepted 21 April 2011 Available online 4 May 2011 Keywords: Beta diversity Dispersal Invasibility Ecological incumbent Encrusting foraminifera Opportunistic Carbonates a b s t r a c t The spatial and temporal distribution and diversity of sediment-dwelling foraminifera are reasonably well known, but encrusting (hard-substrate dwelling) foraminifera are little studied. Encrusting foraminifera are common in the world's oceans, attached to floating debris or marine animals in the water column to living on rocks, sand grains and organisms in benthic environments from shallow to deep marine regions. With projected ocean acidification and warming conditions, these important calcifying protists that comprise beaches, buffer sediments, and contribute to complex food webs are potentially in peril. Results indicate that calcifying foraminifera were the first to colonize experimental molluscan substrates within the first year in shallow habitats, with colonization offshore in subsequent years. Agglutinated foraminifera become more common after one year. Species richness (α diversity) remained relatively similar throughout the study, but species turnover (β diversity) was greatest within the first year and between the shelf/slope break and deeper water, following the thermocline and photic zone regions. The equivalent of the Shannon Entropy Index provided important information on β diversity and community structure. Paleobathymetric distributions can be resolved after six years into four distinct foraminiferal distributional zones: shallow shelf (15 m), outer shelf (33 m), shelf/slope break (73–88 m), and slope depths (N 213 m to 267 m). Some encrusting foraminifera are invasive, settling in high numbers within the first year, and increasing their abundance through the duration of the experiment. A foraminiferan, Discorbis bertheloti, was discovered to bioerode carbonate, and is a potentially excellent paleobathymetric indicator for 15–33 m depths. Results differ from previously reported pioneer and climax foraminiferal communities documented for Caribbean coral reefs, because long-term experiments reveal the spatial and temporal development and distribution of carbonate-producing encrusting foraminifera in these climatically-sensitive regions. © 2011 Elsevier B.V. All rights reserved. 1. Introduction Encrusting organisms that grow attached or cemented to hard substrates create communities that may reflect ambient environmental conditions. If these organisms secrete hard skeletons, they can be preserved in the fossil record and thereby become valuable tools in paleoecological and paleoenvironmental analysis (Taylor and Wilson, 2003). Because of this potential, studies have focused on encrusting organisms that recruit to corals or coral rubble (Palmieri and Jell, 1985; Gischler and Ginsburg, 1996; Hart and Kench, 2007), cavity ⁎ Corresponding author. E-mail addresses: [email protected] (S.E. Walker), [email protected] (K. Parsons-Hubbard), [email protected] (S. Richardson-White), [email protected] (C. Brett), [email protected] (E. Powell). 0031-0182/$ – see front matter © 2011 Elsevier B.V. All rights reserved. doi:10.1016/j.palaeo.2011.04.028 surfaces (Rasmussen and Brett, 1985; Holmes et al., 1997; Richter et al., 2001), molluscan shells (Driscoll and Swanson, 1973; Walker, 1988; Walker and Carlton, 1995; Parsons-Hubbard, 2005) and many other invertebrate substrates (e.g., Jackson and Buss, 1975; Osman, 1977; Sutherland and Karlson, 1977; Jackson, 1979; Mook, 1981; Greene et al., 1983; Nebelsick et al., 1997; Patil and Anil, 2000; Rodland et al., 2006). Despite these studies, there is limited knowledge about how encrusting organisms vary along environmental gradients (Martindale, 1992; Walker et al., 1998; Parsons-Hubbard et al., 1999; Lescinsky et al., 2002; Parsons-Hubbard, 2005; Mallela, 2007). Additionally, little is known about encrusting species diversity (species richness, α diversity), abundance and species turnover (β) and how these diversities vary spatially and temporally. Such studies would refine the ecological dynamics that underpin paleoecological, paleoenviromental and paleoclimatic reconstructions (Debenay and Payri, 2010). 326 S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 The present study focuses on foraminifera that encrust experimentally-deployed molluscan shells to examine diversity (species richness, α and β) and abundance with depth and time across a carbonate bathymetric gradient to determine: (1) whether assemblages of encrusting foraminifera are relatively stable, (2) how long it takes for encrusting species to recruit to the substrates (invasibility or colonization rate), and (3) whether predictions about the utility of foraminiferal encrusting associations can be made for the fossil record. Additionally, we tested various beta (β) diversity metrics, including equivalents of Shannon Entropy (Jost, 2007), to find a β metric that best captures foraminiferal species turnover. Jost (2006, 2007) cogently argued that equivalents of Shannon Entropy could represent true diversity. Following MacArthur (1965) and Hill (1973), Jost (2007) showed that most estimates of β diversity (e.g., Whittaker, 1965, βw; Lande, 1996, βadd) were biased because β did not function independently of α (local diversity). Therefore, we focused on using the equivalent of the Shannon Entropy Index (after Jost, 2006, 2007) and compared it to additive and multiplicative β diversity indices to understand the turnover dynamics of encrusting foraminifera with depth and by year. With global climate change and the resulting mass overturn of species diversity in relation to shifting food webs (Richardson and Schoeman, 2004; Frank et al., 2005; Parmesan, 2006; O'Conner et al., 2009), it is crucial to have reliable and quantifiable species diversity metrics that can be applied globally and across regions. Diversity metrics are also very important for applications to the fossil record that focus on past climate and environmental change (Olszewski, 2004; Patzkowsky and Holland, 2007; Holland, 2010; Wilson, 2011). Majorities of encrusting foraminifera are small (b1 mm) and their community dynamics may be more readily observed on smaller substrates, such as molluscan shells or rocks. They may be invaluable for evaluating ancient environments where fossilization may only preserve hard substrates and skeletal debris, such as those that occur at transgressive lags or flooding surfaces (refer to Brett, 1995; Holland, 1995). Encrusting foraminifera also contribute to the geologic record of reefs (Palmieri and Jell, 1985; Rasser and Piller, 1997; Bosellini and Papazzoni, 2003; Varrone and d'Atri, 2007) and, like benthic foraminifera (e.g., Hallock et al., 1986; Murray, 2006), they produce carbonate, but are often not considered in relation to the carbonate budget of benthic and pelagic systems. 1.1. Background on encrusting foraminifera Encrusting foraminifera include attached species (those that attach by granuloreticulopods, like Amphistigina gibbosa), cemented species (those that adhere to the substrate using an organic adhesive, such as Rosalina globularis), and cemented species that also bore into the substrate, such as Cibicides refulgens in Antarctica (Alexander and DeLaca, 1987). Encrusting foraminifera are found at all depths and in most depositional settings where suitable substrates occur, such as manganese nodules in the deep sea (Mullineaux, 1988), inside the tubes of deep-sea agglutinated foraminifera (Gooday and Haynes, 1983), on shallow water sea grass blades and algae (Hallock et al., 1986; Martin, 1986; Langer, 1993), on invertebrates (Langer and Bagi, 1994) and on floating plastic debris (Gregory, 2009) among many other substrates (Cushman, 1910; Korringa, 1951; Nyholm, 1961; DeLaca and Lipps, 1972; Gooday and Haynes, 1983; Lipps, 1983; Alexander and DeLaca, 1987; Mullineaux, 1987, 1988; Alve, 1995; Resig and Glenn, 1997; Zampi et al., 1997; Mullineaux et al., 1998; Alve, 1999; Vénec-Peyré, 2004; Murray, 2006; Richardson, 2006; Mateu-Vicens et al., 2010). Encrusting foraminifera have a fossil record dating back to the late Ordovician (Moreman, 1933), while sediment-dwelling (benthic) calcareous and agglutinated foraminifera extend to the Cambrian (Riding and Brasier, 1975; McIlroy et al., 2001; Scott et al., 2003). Shallow-water encrusting foraminifera are the most studied (Palmieri and Jell, 1985; Prager and Ginsburg, 1989; Martindale, 1992; Langer, 1993; Kitazato, 1994; Elliott et al., 1996; Gischler and Ginsburg, 1996; Beaulieu, 2001; Wilson and Ramsook, 2007), but at depths greater than SCUBA-diving depths (N25 m), much less is known about encrusting foraminifera. Indeed, unlike sedimentdwelling foraminifera (i.e., Lee et al., 1980; Buzas et al., 1989; Alve, 1999; Alve and Olsgald, 1999; Fujita, 2004) few studies have experimentally investigated the temporal dynamics of encrusting foraminifera across shelf-and-slope habitats. Experiments of less than six-months in duration have been done on encrusting foraminifera in shallow-water habitats (b30 m; reviewed by Alve, 1999; Ribes et al., 2000; Fujita, 2004); and, in deep-sea habitats, experiments have run for up to three years (N2000 m; e.g., Van Dover, 1988; Mullineaux et al., 1998). There are few experimental studies that bridge the gap between shallow shelf and deep-sea environments (Parsons-Hubbard et al., 1997; Walker et al., 1998). Benthic foraminifera are important in modern seas as indicators of water quality, pollution, eutrophication, paleoenvironments and paleobathymetry (e.g., Alve, 1995; Goldstein, 1999; Hallock, 2000; Hallock et al., 2003; Murray, 2006; Richardson, 2006; Uthicke and Nobes, 2008; Martinez-Colón et al., 2009; Sen Gupta and Smith, 2010; Gooday, in press), and encrusting foraminifera may be just as important. For example, enhanced nutrient run-off from seabird rookeries increased diversity but lowered the density of encrusting foraminifera in sea grass beds, suggesting that encrusting foraminifera could be used as indicators of eutrophic conditions in modern and past ecosystems (Richardson, 2006). Because of their long fossil record dating back to the early Paleozoic, encrusting foraminifera may be invaluable for paleogeographic, paleoecological, and taphofacies studies. In the early Eocene of Europe, encrusting acervulinid foraminifera constructed large (8 × 2 km wide) reefs (Perrin, 1987; Plaziat and Perrin, 1992). These unusual foraminifera grew much deeper than corals, extending framework reefs into the deep sea during that time (Plaziat and Perrin, 1992). Encrusting foraminifera may settle on specific locations on the host shells, indicating feeding behavior of the fossil host (Zumwalt and DeLaca, 1980) or parasitism, as in the case of Recent Cibicides refulgens that live on the shells of the Antarctic scallop, Adamussium colbecki (Alexander and DeLaca, 1987). Still, there is limited knowledge about the utility of these foraminifera in taphofacies analysis, especially how they vary along environmental gradients or among different habitats within the same ecosystem (Choi and Ginsburg, 1983; Choi, 1984; Mallela, 2007). Perhaps this is because foraminifera are generally overlooked in favor of encrusting invertebrates or algae, such as bryozoans, serpulid polychaetes and coralline algae (Debenay and Payri, 2010). This need not be the case, as we posit that encrusting foraminifera are just as important members in structuring communities on hard substrates, whether the substrates are sand grains on the sea floor or floating marine debris (see Kitazato, 1994; Gregory, 2009). 2. Methods 2.1. Study site and deployment depths Experiments were deployed in 1993 along two transects, AA and BA, located on the eastern margin (windward side) of Lee Stocking Island, Exuma Cays (Fig. 1). For this paper, only the AA experiments will be discussed (for the BA transect data, see Richardson-White and Walker, this issue). The AA transect has been used for coral reef studies since the 1970s, including research on coral bleaching (Manzello et al., 2009) and microbial bioerosion of reef substrates (Vogel et al., 2007). The AA transect is also used by the Shelf-andSlope Experimental Taphonomy Initiative project (SSETI) to examine carbonate accumulation, bioerosion, and chemical/physical factors S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 327 Fig. 1. The study area, Lee Stocking Island, is located on the southwest side of Exuma Sound. The Caribbean Marine Research Center (CMRC) provided laboratory and field support and experiments were deployed and collected along transect AA located perpendicular to the shelf edge northeast of CMRC. that affect the taphonomy of macroinvertebrate hard parts and wood (various authors, this issue). Experiments were emplaced along the AA transect by SCUBA divers at 15 m and 33 m, and below this depth, experiments were deployed by submersibles to 267 m (Nekton Delta, Nekton Gamma and Clelia) (Fig. 2). Deployment sites ranged from shallow hardground to deep aphotic slope (Table 1). Lee Stocking's carbonate platform extends approximately 2 km oceanward to the shelf/slope break at 88 m. Fringing and patch reefs are common on the platform (Kendall et al., 1989). From the shelf/slope break, topography drops precipitously (called the Exuma Wall) to approximately 200 m, then continues at a slope of 60° to 2000 m in water depth (Pitts and Smith, 1993; Smith, 2001). The shelf/slope break topography records the Wisconsin low still stand that occurred at 100 m below present mean sea level (Liddell and Ohlhorst, 1988). Circulation in Exuma Sound is dominated by large-scale gyres that extend to 200 m; water regularly exchanges between the Atlantic Ocean and the shallow carbonate banks (Colin, 1995; Stockhausen and Lipcius, 2001). Sea Surface Temperatures (SST) remain relatively stable at Lee Stocking Island: a ten-year seasonal record indicates winter temperatures of 23 °C ranging to 29 °C in summer (van Woesik et al., 2010). Marine temperatures along the AA transect rapidly change from 29 °C on the platform to 24 °C at 100 m, then decline steadily to about 19 °C at the deepest site (267 m). Salinity increases from 36.7 ppt to 37.3 ppt in the vicinity of 100 m, but returns to 36.7 ppt below 150 m (Hickey et al., 2000). The photic zone in the Caribbean region (designated as 1.0% of surface illumination) extends to 65 m, with 0.05% illumination to 110 m (Brakel, 1979; Liddell and Ohlhorst, 1988). 2.2. Experimental design Deployed shells included five replicates each of two gastropod species that were commercially available: the Philippine mud snail, Telescopium telescopium, and the conch, Strombus luhuanus. Importantly, Fig. 2. Shelf-slope deployment sites demarcated by depths along the AA transect. Sites are: shallow shelf (15 m), outer shelf (33 m), shelf/slope break (73 m, 88 m), and slope or bathyal sites (213 m, 264 m, and 267 m). 328 S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 Table 1 Description of deployment site, depth, habitat and site (substrate) description, collection interval and the burial state of the deployed mesh bags upon recovery. Site Depth (m) Habitat description Site description Collection interval Recovery state 1 year 2 years Fully exposed Fully exposed, moved a short distance by a hurricane Buried Partially buried Buried Buried Fully exposed Fully exposed Fully exposed Fully exposed Fully exposed Fully exposed Fully exposed Fully exposed Fully exposed Fully exposed Partially buried Partially buried Fully exposed Fully exposed Fully exposed AA50 15 Patch reefs, sand channels, and firm-grounds Firm ground w/ coarse carbonate sand AA100SO 33 Patch reefs and sand channels Coarse carbonate sand AA240WA 73 Steep near-vertical wall with narrow ledges Hardground ledge AA290WA 88 Steep near-vertical wall with narrow ledges Hardground ledge AA700CR 213 Talus slope with scattered allochthonous boulders Thin veneer of fine carbonate sand over hard bottom AA850CR 264 Crest of relict sand dune Fine carbonate sand AA875TR 267 Trough of relict sand dune Fine sand veneer over hard surface both species have similar microstructure and mineralogy to native species found in the area against which to compare our results (Cai et al., 2006): Telescopium is a cerith with many common Caribbean relatives such as Cerithium spp. Strombus also has a number of local relatives (Strombus gigas, Strombus gallus, Strombus pugilis). All shells were clean and deployed in mesh bags (mesh size 2 cm) and strung on weighted PVC poles for ease of recovery via submersible (Fig. 3). The 1994 data includes Telescopium that were deployed at 15 m, 33 m and 213 m; all other arrays (1995, 1999) had complete sets of Telescopium for all depths; Strombus were deployed at all depths for all years. During the six years of this study, some shell bags were buried and re-exhumed: one experiment at 15 m was moved a few meters from its original deployment site by a hurricane (Table 1). Experiments were recovered after one year (1994), two years (1995), and six years (1999) via SCUBA for shallow sites (15 m, 33 m) and via submersible for deeper sites (N33 m). Upon recovery, each shell was gently rinsed of sediment and photographed. Note: shells that were not in bags or tethered were also deployed in 1993 at AA transect sites, but none were recovered from the shallow shelf to upper bathyal sites (to 213 m). Shells from slope sites 6 years 1 year 2 years 6 years 1 year 2 years 6 years 1 year 2 years 6 years 1 year 2 years 6 years 1 year 2 years 6 years 1 year 2 years 6 years (264–267 m) were recovered, but there was no statistical difference between those shells and the bagged shells. 2.3. Taxonomic composition and alpha diversity All foraminifera were identified by the first two authors under wet and dry conditions using a dissecting scope at high magnification and a Scanning Electron Microscope (SEM). Whenever possible, foraminiferal experts (R. Martin, P. Hallock and S. Goldstein) verified species. Foraminifera were not stained with rose bengal or other live-tissue marker, so the results presented here conservatively represent live plus dead encrusting foraminifera. Rose bengal staining is an imperfect method because the stain can be retained in organic matter from foraminiferal skeletons (tests) even after the living foraminiferan has died (Boltovskoy and Lena, 1970; Murray and Bowser, 2000). The focus of our work was to treat the modern specimens as if they were already fossils, providing a snapshot of live + dead encrusting assemblages of foraminifera with time. Total abundance and average abundance of live + dead foraminiferal species that encrust Telescopium and Strombus shells were analyzed. Species richness (S, numbers of species; also a type of α diversity), Shannon Entropy Index (H), and evenness (Pielou's J) were analyzed for each year by depth. The Shannon Entropy Index is an information statistic, with lower H values indicating that the assemblage or community is affected by dominance, and higher H values indicating equitable distributions of individuals among its species. The Shannon Entropy Index is calculated as follows: S H = − ∑ pi ln pi i=1 where H is Shannon Entropy and pi is the proportion of each species in the sample (Hayek and Buzas, 1997). Evenness was calculated to determine if individuals were equally partitioned among the species per each depth using Pielou's J evenness metric: J = H = ln ðSÞ Fig. 3. Experimental array showing mesh bags tied to PVC rod. A polyethylene float is tied to one end of the rod with a 4.5 kg weight to offset the flotation. The float allows the experimental array to be easily relocated after many years on the sea floor. where J is Pielou's evenness metric, H is the Shannon Entropy Index, and S is species richness (Hayek and Buzas, 1997). Evenness (J) ranges from 0 (individuals are distributed disproportionately among the 329 S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 species, indicating dominance) to 1 (individuals are equally distributed among the species). 2.4. Beta-diversity metrics To determine the turnover of species per depth and per year, four β metrics were used and compared: (1) simple counts of turnover based on unique species that were not shared between depths or time periods, herein called “βcounts”; (2) Whittaker's β which is a multiplicative process where total diversity (gamma or γ) is divided by average local diversity (average alpha, or α̅): (βw = γ / α̅) (Whittaker, 1965); (3) additive β, which is calculated by subtracting average alpha from gamma (βadd = γ − α̅) (Lande, 1996); and (4) calculating the Shannon Entropy Index and taking its equivalent for both alpha and gamma diversity to calculate the equivalent β (herein called βJost based on Jost, 2006, 2007). Jost (2006, 2007) found that by converting the classic Shannon Entropy Index (H) to its equivalent, exp(H) (also called: e H, eH, or effective species diversity), that it represents true species richness if the samples have individuals that are equally distributed among the species. Jost's exp(H) gives an approximation of the dominant species when individuals among species within the sample or community are not equally distributed. Hence, taking the equivalent of the Shannon Entropy can approximate true diversity when all species are equitably distributed and also provides insights into community structure when individuals among species are not equitably distributed. 2.5. Density of encrusting foraminifera and distributional pattern on exposed versus unexposed shells The number of foraminifera per cm 2 was determined by taking the surface area of each shell and assuming that shell shape was roughly equivalent to a right cone (Richardson-White and Walker, this issue). Using this method, foraminiferal occurrence on each shell was corrected for surface area and presented as the number of individuals or number of species per cm 2. The mean shell surface area for Telescopium telescopium was 52.5 cm 2 (n = 63, SD = 10.8) and a mean of 34.3 cm 2 (n = 64, SD = 8.5) for Strombus luhuanus. Abundance patterns of encrusting foraminifera on exposed (i.e., portion of the shell exposed above the sediment–water interface) versus unexposed regions of the shells (i.e., portion of shell below the sediment–water interface) were analyzed using a Mann–Whitney U-test (M–W U-Test). Table 2 Species of encrusting foraminifera, their abundance (n) with depth (m, meters) for year 1994 and their diversity indices, Lee Stocking Island, Bahamas. Species 15 m 33 m 88 m 213 m 267 m Totals Acervulina inhaerens Biarritzina carpenteriaeformis Caribeanella sp. Carpenteria balaniformis Cibicides refulgens Cibicides lobatulus Cibicides sp. ?Cibicorbis sp. Cornuspiramia cf. adherens/antillarum Diffusilina/Iridia sp. Discorbis bertheloti Discorbinellidae Gypsina globularis Gypsina plana Haplophragminoides sp. Hemisphaerammina sp. Homotrema rubrum Neoconorbina terquemi Nodobaculariella sp. Placopsilina sp. Planorbulina acervalis Planorbulinella sp. Rosalina-like sp. Rotalliammina sp. Sahulia ?patelliformis Spirillina vivipara Textulariella sp. Includes: Textulariella cf. barrettii and Textulariella cf. mayori Tritaxis ?fusca Unid. Foram A Unid. Foram B Unid. Foram C Unid. Foram D Unid. Foraminifera Unid. Miliolidae Unid. Textularidae Total individuals 279 0 71 0 0 0 0 0 0 1 350 1 0 3 1 0 1 1 321 1 1 16 7 7 0 0 0 0 3 18 0 0 22 0 0 20 8 0 0 0 1 0 5 2 0 0 0 2 4 45 35 8 1 343 0 48 0 23 3 0 0 7 2 0 4 547 0 2 0 0 3 0 11 0 0 17 4 0 0 1 11 0 31 614 0 1 0 0 0 0 0 0 0 4 0 0 1 0 0 1 2 6 1 0 0 0 2 0 5 0 0 0 0 2 0 0 0 0 0 8 0 0 57 0 0 2 4 0 4 0 0 1 0 0 0 0 1 0 0 0 3 4 0 0 20 48 4 44 7 3 1 8 13 1 38 1175 1 3 60 4 5 2 0 73 17 1 1 0 1 0 1338 6 0 0 0 0 0 0 0 799 26 0 0 0 0 0 0 0 86 11 0 0 0 0 0 0 23 136 3 0 0 0 0 1 0 0 30 46 73 17 1 1 1 1 23 2389 20 1.57 4.83 0.52 – 15 1.00 2.72 0.37 13 12 1.81 6.14 0.73 14 9 1.73 5.64 0.79 12 12 2.31 10.11 0.93 9 γ = 35 Species richness (α) Shannon Entropy (H) exp(H) Pielou's J evenness Species turnover with depth, βcounts Average exp (H): 5.9 2.6. PCA distributional patterns of encrusting foraminifera with depth The distributions of foraminifera that encrusted Strombus and Telescopium shells were examined for each site using Principle Component Analysis (PCA using PC-ORD software; McCune and Grace, 2002). PCA allows for the reduction of complex data on abundance of multiple species to be reduced to fewer new variables. Six-year data, corrected for surface area of each shell substrate was used in the PCA. Species abundance data from five shells from each species (Strombus, Telescopium) per depth were analyzed; data were log transformed to minimize the effect of the few species that had unusually high abundance. 3. Results 3.1. Taxonomic composition of abundant species and α and β diversity with depth In 1994, there were 35 species representing a total of 2389 individuals for all depths pooled; most of the richness was limited to the shelf (Table 2). The Shannon Entropy values indicated that the five sites were different, reflecting more dominance on the shelf and less dominance at deeper depths. Evenness values indicate less equitability at 33 m, with the highest equitability at 267 m. The average Shannon equivalent diversity (expH) suggest that five to six species were dominant in 1994. Using this equivalent, the dominant species were those that had N50 individuals (i.e., Planorbulina acervalis, Acervulina inhaerens, Cornuspiramia adherens, Rotaliammina sp., and unidentified foram A which appeared to be newly recruited P. acervalis). Species turnover, based on counts, was relatively high for all depths examined (Table 2). The pooled equivalence (expHpooled) by depth was 29.43 species, a lower metric than counts because of the influence of dominant taxa (Table 3). Beta diversity among depths (βJost) was 5 for 1994, indicating that all five depths had unique communities (Table 3). A total of 3190 individual foraminifera encrusted the experimental shells in 1995 for all depths pooled, and the highest species richness occurred on the shelf and shelf/slope break sites. Taxonomic composition included six species with greater than 100 individuals: Planorbulina acervalis, Discorbis bertheloti, Placopsilina. sp., Rotalliammina., Tritaxis ?fusca, and Cibicides refulgens out of a total of 33 species (Table 4). The Shannon Entropy values indicated that the seven sites 330 S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 Table 3 Species of encrusting foraminifera, their abundance (n) with depth (m, meters) for year 1995 and their diversity indices, Lee Stocking Island, Bahamas. Species 15 m 33 m 73 m 88 m 213 m 264 m 267 m Totals Acervulina inhaerens Amphistegina gibbosa Ataxophragmoides sp. Biarritzina carpenteriaeformis Carpenteria balaniformis Cibicides refulgens Cibicides lobatulus Cibicides sp. Cornuspiramia cf. adherens/antillarum Discorbis bertheloti Dyocibicides ?biserialis Gypsina globularis Gypsina plana Gypsina vesicularis Haplophragminoides sp. Hemisphaerammina sp. Homotrema rubrum Neoconorbina terquemi Placopsilina sp. Planorbulina acervalis Planorbulinoides sp. Rosalina-like sp. Rotalliammina sp. Sahulia ?patelliformis Spirillina vivipara ?Sporadotrema sp. Textulariella sp. includes: Textulariella cf. barrettii and Textulariella cf. mayori Tritaxis ?fusca Unid. Foram A Unid. Foram D Unid. Foraminifera Unid. Miliolidae Unid. Textularidae Total individuals 35 1 4 0 3 16 4 0 8 233 0 19 12 0 0 6 14 0 55 596 0 2 0 0 4 0 0 0 0 0 0 41 0 1053 40 10 4 0 3 34 4 0 40 3 0 18 54 2 0 2 42 10 44 621 8 0 0 0 6 1 0 4 0 0 0 4 0 954 0 21 1 0 10 18 9 0 14 0 5 21 10 0 0 1 32 0 64 84 0 0 0 0 36 1 0 152 0 0 1 0 0 480 0 0 1 1 2 11 10 0 17 0 5 16 0 0 0 6 4 0 55 68 0 0 1 0 29 9 0 68 1 1 2 0 0 307 0 0 0 0 0 23 0 0 0 0 0 0 0 0 0 9 0 0 0 35 0 0 70 2 4 0 0 7 0 0 1 0 9 160 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0 3 0 0 0 5 0 0 85 0 0 0 4 4 0 0 0 0 16 126 0 0 0 1 0 13 3 1 0 0 0 0 0 0 3 3 0 1 0 5 0 0 51 11 0 0 0 12 0 0 0 0 6 110 75 32 10 2 18 124 30 1 79 236 10 74 76 2 3 30 92 11 218 1414 8 2 207 13 79 11 4 247 1 1 4 45 31 3190 Species richness (α) Shannon Entropy (H) exp(H) Pielou's J Species turnover with depth βcounts 17 1.459 4.301 0.52 – were different but that there was more equitability in species distribution at the shelf/slope break sites (73 m, 88 m). The average Shannon equivalent diversity (expH) indicated that six species were dominant (i.e., the species listed above). The highest equitability occurred at 213 m, with the lowest equitability at 15–33 m. Species turnover was relatively moderate for all depths except between 88 m and 213 m, where the highest species turnover occurred in 1995 (Table 4). In 1995, exp(Hpooled) was 40.72 when in fact there were 33 species that year based on species richness (Table 3). βJost for 1995 was 7, and there were seven sites at different depths, illustrating that these depths were unique in species compositions (Table 3). After six years, taxonomic composition included 11 species each with N100 individuals out of a total of 34 species and 5193 individuals (Table 5). Unlike the other two deployment years, there were three major patterns for these common species: species that were restricted to the shelf (b33 m: Acervulina inhaerens, Discorbis bertheloti), species that were restricted to the shelf and shelf/slope break (b88 m: Cornuspiramia cf. adherens/antillarum, Homotrema rubrum, unidentified Miliolidae), and species that occurred across all depths (15– 267 m: Cibicides refulgens, Placopsilina sp., Planorbulina acervalis, Spirillina vivipara, and unidentified Textularidae). The highest species richness occurred at 15 m and 88 m (Table 5). The Shannon Entropy values indicated that the six depths were slightly different reflecting more equitability of species distributions, with the 33-m site exhibiting dominance. The Shannon equivalent diversities suggest that five to ten species (average 8 species) were dominant in 1999 depending on the depth (Table 5). Evenness values were equitable among most depths, with the 33-m site having the least equability. 21 1.509 4.526 0.50 6 17 2.148 8.567 0.76 8 19 2.207 9.088 0.75 6 9 1.612 5.013 0.91 14 7 1.152 3.165 0.59 4 12 1.802 6.067 0.73 7 γ = 33 Average exp(H): 5.8 Species turnover (βcounts) was moderately high for most depths; and, like 1995, species turnover was highest between 88 m and 213 m (Table 5). βJost for 1999 was 6, representing six depths with distinguishable foraminiferal communities (Table 3). Based on exp (Hpooled) there were 45 species in 1999, yet 34 species actually occurred in 1996. What is remarkable is that the exp(Hpooled) of 1999 does reflect the total gamma diversity, 45 species, for the entire sixyear study (Table 3). In general, the encrusting foraminifera that recruited to experimental shells at 15 m were calcareous foraminifera (Plates I, II). Calcareous foraminifera also recruited to 33-m shells, with the addition of calcareous agglutinated species, like Placopsilina sp. (Plates III, IV). Encrusting foraminifera that were common at the shelf/slope break (73–88 m) included calcareous forms such as Planorbulina acervalis and Cibicides refulgens and agglutinated species like Tritaxis ?fusca, Placopsilina sp., and Rotaliammina spp. (Plate V). Textularid foraminifera were also typical below the shelf/slope break (Plate VI). Some species, like Spirillina vivipara, were distributed from the shallow shelf to slope (Plate VII). 3.2. Comparison of β-diversity metrics Four β metrics were used to compare species turnover among depths and between deployment years (Table 6). The two metrics, βcounts and βJost, provided the most ecological information for encrusting foraminiferal communities. Based on βcounts, there was more turnover among species between depths within the first year of deployment (1994), than the other two years (Table 6). Comparisons 331 S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 Table 4 Encrusting foraminifera species, their abundance (n) with depth (m, meters) for year 1999 and their diversity indices, Lee Stocking Island, Bahamas. Species 15 m 33 m 88 m 213 m 264 m 267 m Totals Acervulina inhaerens Amphistegina gibbosa Ataxophragmoides sp. Bdelloidina ?aggregata Biarritzina carpenteriaeformis Bueningia sp. Carpenteria balaniformis Cibicides refulgens Cibicides lobatulus Cibicides sp. Cornuspiramia cf. adherens/antillarum Discorbis bertheloti Discorbinellidae Dyocibicides ?biserialis Gypsina globularis Gypsina plana Haplophragminoides sp. Hemisphaerammina sp. Homotrema rubrum Neoconorbina terquemi Nodobaculariella sp. Placopsilina sp. Planorbulina acervalis Rhizammina sp. Rotalliammina sp. Sahulia ?patelliformis Spirillina vivipara ?Sporadotrema sp. Textulariella sp. Includes: Textulariella cf. barrettii and Textulariella cf. mayori Tritaxis ?fusca Unid. Foraminifera Unid. Foraminifera D Unid. Miliolidae Unid. Textularidae Total individuals 172 2 7 15 1 1 0 31 33 0 15 73 0 21 11 85 1 18 327 26 4 17 241 0 0 0 13 0 0 5 3 0 43 20 1185 70 4 8 0 0 0 0 194 23 0 8 84 0 6 18 1 4 0 2 32 0 205 897 0 0 2 64 0 0 11 0 0 49 0 1682 0 19 2 0 18 0 20 25 2 0 112 0 0 4 31 5 25 2 93 2 15 146 248 1 0 0 107 2 0 424 2 2 34 36 1377 0 1 0 0 1 0 0 60 1 1 0 0 0 3 0 0 0 4 0 0 0 19 120 1 24 0 1 0 0 55 3 0 0 43 337 0 0 0 0 3 0 0 52 4 0 0 0 4 1 0 0 2 1 0 0 0 1 58 11 33 2 1 0 0 76 1 0 0 26 276 0 0 0 0 4 0 0 79 6 0 0 0 0 0 0 0 13 0 0 0 0 35 43 0 16 3 4 0 3 106 12 0 0 12 336 242 26 17 15 27 1 20 441 69 1 135 157 4 35 60 91 45 25 422 60 19 423 1607 13 73 7 190 2 3 677 21 2 126 137 5193 Species richness (α) Shannon Entropy (H) exp(H) Pielou's J Species turnover with depth, βcounts 25 2.304 10.014 0.71 – among years using βcounts indicated that more species turnover occurred between 1994/1995 and 1994/1999. Whittaker's multiplicative βw also revealed the same trend, but not the true number of species that turned over. βadd also revealed the same trend, but species turnover was overestimated when compared to the true species turnover based on βcounts. In contrast, the βJost metric indicated that within years, the structure of the communities were distinct for all depths for each time period. When βJost was compared between years, the highest turnover also occurred in 1994/1995 and 1994–1999. Additionally, the true gamma diversity for all years pooled can be calculated using the Shannon equivalents: If the average expα is added to the average exp(H), 45 species will result (refer to Table 3). 3.3. Temporal patterns in encrusting species richness and abundance for Telescopium and Strombus Species richness slightly differed among the shell types. In 1994, species richness on Telescopium shells declined with depth from 14 species (n.b. Texturiella spp. was treated as two species here: Textulariella cf. barrettii and Textulariella cf. mayori) on the shelf to 10 species at 213 m (Fig. 4). In contrast, species richness on Strombus shells for 1994 was highest at 15 m (16 species), declined to 11 species between 33 m and 213 m, and increased to 14 species at 267 m (Fig. 4). In 1995, species richness on Telescopium shells from 15 m to 73 m varied between 16 and 18 species, respectively, and declined in species richness below 73 m. Eleven foraminiferal species 19 1.686 5.397 0.57 8 25 2.247 9.459 0.70 12 15 1.824 6.196 0.67 14 16 1.947 7.007 0.70 5 13 1.973 7.192 0.77 5 γ = 34 Average exp(H): 7.5 encrusted Strombus shells at 15 m, increasing to 17 species at 33 m and decreasing to 14 species at the shelf/slope break; thereafter, declining to 8 species at the deepest sites. In 1999, species richness on Telescopium shells was higher than that for the 1994 shells; Strombus also had higher species richness for all depths except at 33 m. Both shell types had the same species richness at the shallowest sites, and at 88 m, Telescopium had more encrusting species than Strombus. Species richness on sites b88 m was significantly different for both shell types than species richness below 88 m (MW U-test, P b 0.001 Telescopium; P b 0.0001, Strombus). Abundance differed among the depths per year. After one year of deployment at the sediment–water interface, the 15-m site had the highest abundance of foraminifera, with 597 individuals on Telescopium and 744 individuals on Strombus; abundance steeply dropped for both shell types below this depth (Fig. 5). After two years, Telescopium had 629 individual foraminifera, while Strombus had 422 individuals at 15 m; below this depth, abundance steeply declined. After six years, the pattern of abundance was remarkably different, with high abundance of encrusting foraminifera on Telescopium shells at the 33 m rather than at 15 m as seen in previous deployment years. The peak at 33 m for Telescopium in year six is largely due to an increase in abundance of two foraminiferal species, Cibicides refulgens and Planorbulina acervalis. After six years, overall abundance increased for all deployment depths in comparison to previous years. The highest abundance of foraminifera that encrusted Strombus shells occurred at 15 m, rather than at 33 m for Telescopium shells. Encrusting foraminifera on both shells increased in abundance 332 S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 Table 5 Diversity metrics for encrusting foraminifera from Lee Stocking Island, Bahamas for 1994, 1995 and 1999 deployment years. Key: S = species richness; H = Shannon Entropy; exp(H) is exponentiated H of Jost, 2006, 2007; α is average alpha based on actual species counts; expα is exponentiated H pooled and divided by 5 for the number of depths; and βjost is species turnover based on exponentiated Shannon Entropy (Jost, 2007). 1994 S 15 m 33 m 88 m 213 m 267 m Total α expα βjost Individuals H exp(H) Pielou's J 20 1338 15 799 12 86 9 136 12 30 35 unique species 2389 13.6 5.9 5 1.576 1.002 1.814 1.729 2.313 8.434 4.836 2.724 6.135 5.635 10.105 29.434 1995 S H exp(H) Pielou's J 15 m 33 m 73 m 88 m 213 m 264 m 267 m Total α expα βjost 17 1053 21 954 17 480 19 307 9 160 7 126 12 110 33 unique species 3190 14.5 5.8 7 1.459 4.301 1.509 4.526 2.148 8.567 2.207 9.088 1.612 5.013 1.152 3.165 1.802 6.067 11.889 40.727 1999 S Individuals H 15 m 33 m 73 m 88 m 213 m 264 m 267 m Total α expα βjost 25 19 – 25 15 16 13 34 unique species 18.8 7.5 6 1185 1682 – 1377 337 276 336 5193 2.304 10.014 1.686 5.397 – – 2.247 9.459 1.824 6.196 1.947 7.007 1.973 7.192 11.981 45.267 Individuals 0.52 0.37 0.73 0.79 0.93 0.52 0.50 0.76 0.75 0.91 0.59 0.73 exp(H) Pielou's J 0.71 0.57 – 0.70 0.67 0.70 0.77 Grand totals 45 unique species 10,772 individuals between years two and six at 33 m and 88 m. Below the photic zone, abundance of encrusting foraminifera stayed relatively stable for both shell substrates. 3.4. Density and averages of encrusting foraminifera per shell surface area Ten species of encrusting foraminifera contributed at least one individual/cm 2 with Planorbulina acervalis the most abundant species in 1995 per surface area (Table 7). After six years, a different foraminiferal assemblage occurred, with three species represented by at least one individual/cm 2 (Table 8). These six-year samples were dominated by Cibicides, and not by Planorbulina. Additionally, Gypsina plana first appeared as small round crusts (b4 mm diameter) within two years, but by the sixth year, Gypsina crusts were covering most of the shell surfaces. When average abundance of encrusting foraminifera was computed, the most common species often had the widest depth range, such as Planorbulina acervalis, Cibicides refulgens, and Spirillina vivipara for both two years and six years (Figs. 6, 7). Shallow water species were Acervulina, Discorbis bertheloti, Neoconorbina and an unidentified miliolid; species representing the shelf included Homotrema rubrum, Gypsina globularis, Cornuspiramia spp. and Placopsilina; deeper water genera were characteristically Rotalliammina, Tritaxis, Sahulia and unidentified textularids (Figs. 6, 7). Overall, calcareous encrusting foraminifera dominated the shallow shelf and shelf/slope break, while agglutinated species and the calcareous C. refulgens dominated the slope sites. 3.5. Encrusting patterns on exposed and unexposed shell surfaces Foraminifera that encrusted the exposed surface of the shells were significantly more common than foraminifera that attached to unexposed shell surfaces (M–W U-test: exposed = 83, unexposed = 20; P b 0.0001). When individual species of foraminifera were compared, most encrusted the exposed side of the shell (i.e., Planorbulina acervalis, Cibicides refulgens, Cornuspiramia cf. adherens/ antillarum, Placopsilina cf. bradyii, and Tritaxis ?fusca). Foraminifera that exhibited no difference between exposed and unexposed surfaces included Homotrema rubrum and Gypsina plana. 3.6. PCA of the distribution of encrusting foraminifera with depth A principle component analysis was performed on the six-year data to analyze the coherence of encrusting foraminiferal distribution patterns as an indicator of depth and location across the shelf-andslope transect. The first four eigenvalues explain 60% of the variance in the data. Fig. 8 plots the abundance of encrusting foraminifera on Telescopium shells with depth. For Telescopium shells, a plot of component 1 vs. component 2 (Fig. 8A) shows a negative association between all the sites and 88 m. The highest scores, corresponding with 15 m, are driven by those foraminifera that have their greatest abundance at 15 m (Acervulina inhaerens, Bdelloidina sp., Gypsina plana, Hemisphaeramia sp. and Homotrema rubrum). The negative scores for 88 m are driven by the encrusting species, Tritaxis and Cibicides lobatulus. Component 2 splits out the shelf/slope break sites (88 m) from the rest of the data. The foraminifera that are driving this negative loading are those that have their greatest abundance at 88 m (e.g., Amphistegina gibbosa, Biarritzina carpenteriaeformis, Carpenteria utricularis, Cornuspiramia cf. adherens/antillarum, Nodobaculariella sp., Spirillina vivipara, and Tritaxis ?fusca). In Fig. 8B, the 33-m site loads negatively, driven by the foraminifera Cibicides refulgens, Haplophragmoides sp., Placopsilina cf. bradyii, Planorbulina spp., S. vivipara, and an unidentified miliolid. The deep water samples (213–267 m) all plot together, with Rotalliammina and textularids controlling the distribution. A plot of component 2 vs. 3 (Fig. 8C) emphasizes that 15 m, 33 m, and 88 m sites all plot in separate quadrants, while all deepwater sites (213–267 m) plot together. PCA results for foraminifera on the Strombus shells have similar trends as Telescopium (Fig. 9). The first component splits the shell substrates based on depth (Fig. 9A). Unlike encrusting foraminifera on Telescopium shells, the shelf/slope break (88 m) foraminifera load positively with the sites below the photic zone (i.e., 213–267 m). The 15-m and 33-m sites load negatively on the first component. The second component splits the shelf/slope break sites from all other sites based on the foraminifera that have their peak abundance at 88 m (i.e., a similar list to that on Telescopium shells). Component 3 (Fig. 9B) separates the two shallowest sites from sites deeper than 88 m. The species, Cibicides refulgens, Placopsilina cf. bradyii, Planorbulina sp., and Neocornobina terquemi on the 33-m shells contribute to the negative loading. Foraminifera that drive the positive loading of 15-m shells are Bdelloidina sp., Gypsina plana, Homotrema rubrum, Planorbulina acervalis, Dyocibicides biserialis, and unidentified textularids. When component 2 was plotted against component 3, a clear separation of the three photic zone sites occurred (i.e., shallow shelf, outer shelf, and shelf/slope break sites) based on foraminiferal frequency and distribution (Fig. 9C). S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 333 Plate I. Photomicrographs of common encrusting foraminifera at shallow shelf depths (15 m). From left to right, top row: Homotrema rubrum, Planorbulina acervalis, Acervulina inhaerens; bottom row: Gypsina plana, Discorbis bertheloti, Gypsina globularis (top) and Neoconorbina terquemi (bottom). 4. Discussion 4.1. Alpha diversity and taxonomic composition of encrusting foraminifera Species richness of encrusting foraminifera remained remarkably similar for all three sample years varying from 35 species in 1994 to 34 species in 1999 (average 33 species). The number of abundant taxa (those with N100 individuals) increased over the duration of the experiment, from 3 taxa in 1994, 6 taxa in 1995 to 11 taxa in 1999. This pattern follows the overall increase in total abundance of encrusting foraminifera, increasing from 2389 individuals in 1994 to 5193 individuals in 1999 (for all sample dates pooled: 10,772 individuals). The most abundant encruster for all three sample years was Planorbulina acervalis. Planorbulina first colonized in large numbers on the shelf, and after two years, it became common at the shelf/slope sites; by six years it was common at the deepest sites. The deep-water sites are located within a dune field, which may experience geostrophic currents (after Stockhausen and Lipcius, 2001); these currents may increase mixing and help to introduce and advect larvae at these depths. Planorbulina acervalis is known from the Gulf of Mexico and Caribbean Sea, and is a common shallow-water encruster (Cushman, 1922). Planorbulina also encrusts relatively protected regions of reefs (Gischler and Möder, 2009) and exposed blades of sea grasses, such as Thalassia and Syringodium (Wilson, 1998). We found it to encrust carbonate-to-slope experimental shells, and it appears to be opportunistic. Perhaps P. acervalis is more tolerant of varying environmental conditions than previously known or it may represent a species complex like Cibicides refulgens (see Schweizer et al., 2009); once genetic analyses are done, the environmental differences may be parsed out. Planorbulina does not harbor photosymbionts, and this may explain why its distribution was not depth limited in our study. Rather, P. acervalis may consume microalgae (diatoms) and bacterial biofilms by using its reticulopods (after Langer, 1993; Richardson, 2004). Another taxon, Acervulina inhaerens, was very abundant in 1994 and 1999. Acervulinids are more common in deeper water, where competition for space may be reduced (Rasser and Piller, 1997). Acervulinids are also significant framework-builders in Recent and fossil reef environments, and A. inhaerens, is known to make nodules (or macroids) in its adult stage up to 10 cm in diameter (reviewed by Perrin, 1994). These nodules are most common on deep-reef slopes (Perrin, 1994). It is possible that this species is Gypsina plana, as there has been some confusion in the literature about these species: In some treatments, A. inhaerens may be called Gypsina inhaerens (Hohenegger, 2006). In our study, however, Acervulina was restricted to the two shallowest depths for all three sample years. Di Camillo et al. (2008) report Acervulina inhaerens encrusting hydroids in very shallow water from the Mediterranean and Peebles et al. (1997) found it in sediments from the carbonate platform of the northern Nicaraguan Rise (Caribbean Sea). At these shallow depths, interactions among encrusters are more common and could lead to competition (refer to Richardson-White and Walker, this issue). This species did settle in large numbers within the first year of our experiment, and may act to exclude other encrusting organisms via niche incumbency. Niche incumbency occurs when species settle first and maintain their spatial distribution, at both modern and geological time scales; and, they resist invasions of new taxa over time (Bambach et al., 2002; Foote et al., 2007; Valentine et al., 2008). It is quite possible that both Planorbulina acervalis and A. inhaerens are important ecological incumbents for tropical carbonate environments, but this awaits further study. 334 S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 A B 1 2 C D Plate II. Scanning electron micrographs (SEMs) of 15 m encrusting foraminifera: A, Discorbis bertheloti; B, Neoconorbina terquemi; C, Acervulina inhaerens (with Cornuspiramia cf. adherens noted by the number 1 and an unidentified foraminifera denoted by number 2); and D, Gypsina globularis. Homotrema settled on the experimental shells within the first year, but did not become very abundant until the sixth year. In our study, it was restricted to water depths of less than 88 m. Homotrema is reported from high-energy shallow-water settings (Langer, 1993; Gischler and Ginsburg, 1996; Gischler and Möder, 2009) and is known to settle in cryptic habitats, such as the underside of boulders and corals (Cushman, 1922; Emiliani, 1951). Homotrema has at least five morphotypes that are known from Bermudian reefs (i.e., hemispherical, globose, knobby, encrusting and globular; Elliott et al., 1996). The encrusting form is relatively rare (i.e., 12.3%, n = 4002 tests) from Bermudian settings and may be representative of juvenile forms (Elliott et al., 1996). In our study, Homotrema were either crusts or globose forms, consistent with exposed vs. unexposed surfaces of the shells, respectively. Homotrema was also most common at the shallowest site (15 m) and the shelf/slope edge (88 m), where water energy during tidal exchange is greater. Likewise, Hauser et al. (2007) reported Homotrema rubrum from bivalve shells retrieved from reef crest sediments associated with coral atolls from Belize. Therefore, it appears that H. rubrum may be an excellent indicator of high energy water conditions for shallow near shore and shelf/edge (88 m) habitats in tropical and subtropical environments. An unusual bioeroding foraminiferan, Discorbis bertheloti, was very abundant in 1995 and 1999. Until this study, it was not known that this species bioerodes carbonate substrates. Discorbis bertheloti is very small and can be overlooked unless high magnification is used S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 335 Plate III. Photomicrographs of common encrusting foraminifera at outer shelf depths (33 m). Top row, from left to right: Acervulina inhaerens, Cibicides refulgens, Placopsilina cf. bradyii; Bottom row, from left to right: Planorbulina acervalis, Cibicides lobatulus. (N200×). We found that it bored holes within the internal apertural area of the experimental gastropod shells, and thus appears to be a cryptic species that bioerodes carbonate substrates. Because it makes small (b.001 mm) round traces in carbonate, its trace can be used as a bio-depth indicator for shallow tropical water (b33 m). In 1994, it occurred only at the 15-m site, but by 1995 its abundance had increased by five times at that site, while it was rare at 33 m; in 1999 it was common at both sites and never occurred deeper than 33 m. Discorbis bertheloti appears to be an opportunistic species with initial high abundance, and it also maintained high abundance during the six years of the experiment, despite other spatial competitors. This species appears to be an opportunistic ecological incumbent, like the other foraminifera in this study that colonize rapidly in high numbers yet maintain their abundance through time, rather than have population crashes as true opportunistic species are known to do (refer to Levinton, 1970). Discorbis bertheloti is a cosmopolitan species (Loeblich and Tappan, 1988) and is reported from sediments associated with sea grasses (Brasier, 1975). This species is also reported from sediments along the upper continental slope of Florida and is known by various names (185 m; i.e., Rosalina floridana = Rosalinia floridensis = D. bertheloti var. floridensis, Sen Gupta et al., 1981; also Discorbinella bertheloti, see Loeblich and Tappan, 1988). It is also known from the Miocene of Jamaica (Cushman and Jarvis, 1930). Three other calcareous taxa were abundant: Cornuspiramia cf. adherens, Cornuspiramia antillarum and Placopsilina cf. bradyii. Cornuspiramia antillarum is an encrusting milioline with a tubular branching test. This species is considered a bio-indicator of eutrophic waters if its abundance is N70% of the encrusting foraminiferal community that lives on sea grass blades (Richardson, 2006). Richardson (2006) worked in sea grass beds proximal to bird rookeries in Belize, where runoff from nutrient-rich guano occurred, especially in the rainy season. These nutrient-rich waters in Belize had low sea-grass inhabiting foraminiferal diversity, but had high abundance of C. antillarum species. At Lee Stocking Island, Cornuspiramia did not exceed the high percentages reported by Richardson (2006), indicating relatively normal oligotrophic waters. Importantly, Cornuspiramia antillarum has rapid growth rates and is thought to reproduce by asexual fragmentation and multiple fission (Arnold, 1967). This reproductive mode may explain why Cornuspiramia was very common on our first-year experimental arrays. Therefore, in oligotrophic waters, Cornuspiramia may be a pioneer species that can settle quickly, but it is not an ecological incumbent like Planorbulina acervalis or Acervulina inhaerens because it does not maintain its abundance through time. Cornuspiramia was also restricted to shallow shelf depths less than 88 m. Our findings are in agreement with those of Hauser et al. (2007) who reported that C. antillarum was an abundant encrusting taxon of empty bivalve shells and was indicative of wave and current activity in coral atolls from Belize. Placopsilina cf. bradyii only settled on the shallow-water experimental arrays within the first year, then increased in abundance and colonized shelf/slope sites in the second year (to 88 m). By the sixth year, P. cf. bradyii was found at all depths, with its greatest abundance (N100 individuals) at 33 m and 88 m. This species is an agglutinated foraminiferan, and is known from abyssal depths (Gooday and Haynes, 1983). The fossil record of Placopsilina starts in the Middle Jurassic, and some species have commensal or mutualistic associations with Cretaceous bioeroding sponges (Bromley and Nordmann, 1971; Loeblich and Tappan, 1988). While we did not see Placopsilina associations with bioeroding sponges (formerly named as clionid sponges, now called “clionaid” sponges, after Rützler, 2002), we did see a similar agglutinated 336 S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 A B C Plate IV. SEMs of outer shelf in 33 m) encrusting foraminifera: A, Planorbulina acervalis; B, Cibicides lobatulus, and C, Placopsilina cf. bradyii. species, Bdelloidina ?aggregata, that was associated with clionaid holes at the 15-m site in 1999. In 1999, clionaids were much more common than in previous years (Brett, this issue), perhaps facilitating the settlement of Bdelloidina on the shells. Bdelloidina co-occurs in the fossil record with Entobia, a trace fossil for bioeroding sponges like clionaids (Bromley and Nordmann, 1971). Additionally, fossil Bdelloidina is a rare encruster of coral reefs from the Upper Eocene of Italy (Bosellini and Papazzoni, 2003). In the Recent, Bdelloidina is rare in coral reefs from the east and west Flower Garden in the Gulf of Mexico (Poag and Tresslar, 1981). Its rarity may be related to its cryptic habit, encrusting mollusc shells and corals in tropical regions; the deepest it has been reported is 110 m, dredged from those depths during the Challenger Expedition (Chapman, 1900). 4.2. Spatial and temporal difference in β diversity and β-metric comparisons Two metrics, βcounts and βJost, provided the most ecological information for the encrusting foraminiferal assemblages in our study. Based on βcounts, there was more turnover among species between depths within the first year, than the other two deployment years. Comparisons among years using βcounts indicated that more species turnover occurred between the first and second year (1994 to 1995), and between the first and sixth year (1994 to 1999). Whittaker's multiplicative βw revealed the same trend, but not the true number of species that turned over. βadd also revealed a similar trend to βcounts and βw, but species turnover was overestimated when compared to the true species turnover based on βcounts. In contrast, the βJost metric indicated that within years, the structure of the communities were distinct for all depths for each time period. When βJost was compared between years, the highest turnover also occurred from 1994 to 1995, and from 1994 to 1999. Additionally, the true gamma diversity can be calculated using the equivalents of the Shannon Entropy Index: if the average expα is added to the average exp(H), 45 species will result. Thus, βJost is a very important beta diversity metric, comparable to βcounts, but giving more information about community structure, such as the relative number of dominant species and whether sites are similar or different in species composition. S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 337 Plate V. Photomicrographs of common foraminifera below 73 m, from left to right, top row: Planorbulina acervalis, Rotaliammina spp., Placopsilina sp.: bottom row, left to right: Cibicides refulgens and Tritaxis ?fusca. 4.3. Encrusting patterns on exposed and unexposed shell surfaces Foraminifera that attached to the exposed side of the shell occurred with greater frequency than those that occurred on the unexposed surfaces of the shell. Foraminifera that showed no significant difference between exposed and unexposed surfaces included Homotrema rubrum and Gypsina plana, two generally shallow-water taxa. Gypsina plana may harbor photosymbionts (Prager and Ginsburg, 1989), and thus it is likely that its initial attachment occurred on the upper surfaces of the shells (but see Section 4.4.1.). In contrast, several taxa were significantly more frequent on the exposed surfaces (i.e., Planorbulina, Cibicides refulgens, Cornuspiramia, Placopsilina, and Tritaxis). Recognizing these taxa on fossil shells should allow for reliable designation of original orientation of shells in fossil assemblages. 4.4. Common guilds of encrusting foraminifera with depth and time with remarks on dispersal capabilities Species richness and abundance varied slightly by shell type (Section 3.3), consequently, results were pooled to discuss the common species (N20 individuals) that constitute the encrusting foraminiferal guild for each depth. Environmental factors, such as waves, currents, substrate type and the presence of marine grasses and algae are known to affect the distribution and diversity of benthic foraminifera in reef environments (Martin and Liddell, 1988, 1989; Culver, 1990; Lee and Hallock, 2000; Murray, 2006; Gischler and Möder, 2009), and these factors may apply to encrusting foraminifera as well. Additionally, it is well known that populations of benthic foraminifera vary seasonally in shelf-and deep-sea habitats (Duijnstee et al., 2004; Duchemin et al., 2007), and our experiments may include these seasonal variations. 4.4.1. Shallow-water encrusting foraminiferal guild (15 m) By the first year (1994), the most common encrusting foraminifera for the 15-m site were all calcareous species: Acervulina inhaerens, Cornuspiramia cf. antillarum and Cornuspiramia cf. adherens, Discorbis bertheloti, Gypsina globularis, Planorbulina acervalis, and presumably just settled P. acervalis (as unidentified foraminifera A) (Table 9). This shallow guild is composed of foraminifera that may feed using their reticulopods to dislodge bacteria, bacterial biofilms and/or diatoms from the shell substrate (refer to Richardson, 2006). The encrusting foraminifera from this shallow guild are not known to harbor photosymbionts (see Lee and Anderson, 1991; Hallock, 1999; Lee, 2006). Most of the first year guild continued into the second year (1995), except for the addition of the agglutinated species, Placopsilina cf. bradyii, and an unidentified miliolid (Table 9). Placopsilina is not known to harbor photosymbionts, and may possibly acquire food from the shell surface using its reticulopods. By the sixth year, guild associations increased with the addition of the calcareous species, such as Cibicides lobatulus, Dyocibicides ?biserialis, Gypsina plana, Homotrema rubrum, and Neocornobina terquemi, and by the addition of agglutinated textularids. Gypsina globularis (n.b., systematics are varied, some suggest G. globula var. vesicularis: Poag and Tresslar, 1981) is known to attach 338 S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 A Plate VII. SEM of Spirillina vivipara, a species found from the shallow shelf to slope sites. B Plate VI. SEMs of deep-water agglutinated species: A, Textulariella cf. barrettii; B, Textularia cf. mayori. to hard substrates and is hemispherical to spherical in shape (Poag and Tresslar, 1981). In the West Flower Garden Reef (Gulf of Mexico), this species was found attached to coralline algal nodules, reef rubble and reef framework (Poag and Tresslar, 1981). In Poag and Tresslar's study, G. globularis was covered with a dark green biofilm, but in our study, this species was black in color and always spherical in shape making it easy to distinguish from all other foraminifera. Gypsina plana makes relatively large crusts (up to several centimeters in diameter) and is an important component of reef frameworks (Perry and Hepburn, 2008). In reef environments, G. plana recruits to cryptic areas, and is known to encrust coral rubble in patch reefs and lagoons (Perry and Hepburn, 2008). It is also known to occur on exposed substrates in fore-reef environments (Martindale, 1992; Perry and Hepburn, 2008) and can be an epiphyte (Debenay and Payri, 2010). With coralline algae, Gypsina plana may form large (2–15 cm in size) nodules in the eastern Caribbean, usually between 30 and 60 m in water depth (Reid and Macintyre, 1988; Prager and Ginsburg, 1989). These nodules can produce a considerable amount of carbonate: an estimated 391 tons of organic carbon per year may form on the platform of the San Salvador Seamount, Bahamas, from these protists (Littler et al., 1991). From our work, it takes at least six years for G. plana to become common to start the process of nodule formation in these regions. Gypsina plana is cosmopolitan, reported from tropical/subtropical regions in the Indopacific, Caribbean, and Gulf of Mexico (Poag and Tresslar, 1981; Loeblich and Tappan, 1988). In our study, G. plana rarely occurred in 1994, but became somewhat more common in 1995; by 1999, G. plana was very common at 15 m. This species appears to colonize at a slower rate than the other encrusting species, suggesting its dispersal capabilities are limited. 4.4.2. Outer shelf encrusting foraminiferal guild (33 m) The number of common encrusting species for the outer-shelf guild increased from three species within the first year to nine species by the sixth year (Table 9). In 1994, there were only three common species that encrusted the shells at 33 m: Acervulina inhaerens, Placopsilina cf. bradyii and Planorbulina acervalis. In 1995, four more common species were present in addition to the three species from 1994: Cibicides refulgens, Cornuspiramia adherens/antillarum, Gypsina plana, and Homotrema rubrum. In 1999, nine species were common: Table 6 Beta diversity comparisons for species turnover of encrusting foraminifera at Lee Stocking Island within and between years. Type of beta diversity Within years 1994 1995 1999 1994–1995 Between years 1994–1999 1995–1999 βcounts βw (γ / α̅) βadd (γ − α̅) βJost 12 3 24 5 7 2 20 7 8 2 16 6 13 2.8 25.1 12.0 15 2.0 16.9 11.1 9 1.7 11.9 8.5 Key: within years is β diversity calculated in relation to a depth gradient, where βcounts means the species turnover among depths; between years is a comparison of β diversity metrics between sample dates; βcounts: actual counts of species that are unique between the years compared; βw: Whittaker's β diversity calculated by total diversity (γ divided by average alpha (α̅) diversity, and is a measure of turnover along a spatial gradient, in this case, along a depth gradient; βadd, Lande's β diversity, where α̅ is subtracted from γ Lande, 1996); βJost is based on Jost (2007) equivalent diversity: Hγ/Hα̅ (see also Anderson et al., 2011). Numbers were rounded when appropriate. S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 Fig. 4. Change in species richness for encrusting foraminifera on molluscan shell substrates deployed along the shelf and slope, AA transect. A) Richness values for foraminifera encrusting Telescopium shells after one year, two years, and six years of exposure at the sediment–water interface. B) Richness values for foraminifera encrusting Strombus shells after one year, two years, and six years of exposure at the sediment–water interface. The number of different taxa is high on the platform shelf and remains high down to the shelf/slope break at 88 m. Below the thermocline (at 100 m), species richness is significantly less. A. inhaerens, C. refulgens, Cibicides lobatulus, Discorbis bertheloti, Neocornobina terquemi, P. cf. bradyii, P. acervalis, Spirillina vivipara, and an unidentified miliolid. The temporal recruitment patterns may reflect the variation in dispersal and biogeographic-range capabilities of the foraminifera. Cibicides lobatulus is a cosmopolitan species found in shallow-to-outer shelf depths depending on latitude (e.g., Corliss, 1991; Freiwald, 1995; Buck et al., 1999). Cibicides refulgens is also a cosmopolitan species, living in tropical to polar regions (Alexander and DeLaca, 1987; Javaux and Scott, 2003). Cibicides lobatulus is known to graze diatoms and bacteria using reticulopod extrusion and also may suspension feed (Freiwald, 1993). This species (or a related species) may extract extrapallial fluid from its host (Adamussium colbecki) in Antarctica (Alexander and Delaca, 1987; see Schweizer et al., 2008). Both C. lobatulus and C. refulgens were present in 1994, but their populations increased after two and six years at the sediment–water interface. Foraminifera are considered to be opportunists if they have high reproductive rates and good dispersal capabilities (Lipps, 1983), and the two species of Cibicides are opportunists in this sense. Opportunists have short generation times and low competitive abilities, but both species of Cibicides increased in abundance at the same time as other space-using species increased in abundance (i.e., Planorbulina acervalis, Gypsina plana). Therefore, it is possible that Cibicides are 339 Fig. 5. Abundance of individual encrusting foraminifera on shell substrates after one-, two-, and six years of exposure on the sea floor. A) Foraminifera on Telescopium shells: greatest number of individuals occurred at 15 m. Year six shows a peak in abundance at 33 m largely due to the abundance of Cibicides refulgens and Planorbulina). B) Foraminifera on Strombus shells. Peaks in abundance occur at the shallowest depth (15 m) with abundance decreasing with increasing depth. Overall abundance above the 100-m thermocline increased significantly between year two and year six on the outer platform and upper slope. opportunistic ecological incumbents. It is known that Cibicides lobatulus is motile before it attaches, and this ability may allow it to colonize rapidly if their propagules are in the area (Nyholm, 1961; Zumwalt and DeLaca, 1980; Beaulieu, 2001). Neocornobina terquemi is reported from a wide variety of depths from very shallow (Goubert et al., 2001) to deep bathyal (Culver, 1988). This species is also present in inland saline lakes of Egypt (Abu-Zied et al., 2007) and from lagoons to reefs in Bermuda (Javaux and Scott, 2003). It is also known as an epiphyte (Langer, 1993). In 1994 and 1995, N. terquemi was not very common on the shallow shelf, but by 1999, it was relatively common on the shallow shelf and rare at the shelf/slope break. This species is cosmopolitan in distribution (Loeblich and Tappan, 1988), yet it appears to have slower dispersal capabilities in comparison to the other encrusting taxa in our study. Spirillina vivipara is unusual in that its test is free, and it is rarely attached to the substrate (Loeblich and Tappan, 1988). The specimens that we examined were gently attached to the substrate, and thus, we could be underestimating its true abundance if the specimens detached during retrieval and processing of the samples. In 1994, this species was very rare at 15 m and 88 m, but by 1995, its highest abundance occurred at the shelf/slope break; in 1999, its highest abundance was at 33 m and 88 m. This species has been reported in nearshore lagoons and reefs near Bermuda (Javaux and Scott, 2003), reefs in the Gulf of Mexico (Poag and Tresslar, 1981), and from cooler water regions (Green, 1960). 340 Table 7 Mean abundance per cm2 of the top fifteen foraminiferan species that encrust Telescopium shells collected in 1995, AA transect, Lee Stocking Island, Bahamas. Note: Cibicides spp. includes Cibicides lobatulus and Cibicides refulgens; Cornuspiramia spp. includes: Cornuspiramia cf. adherens and Cornuspiramia cf. antillarum; Tritaxis spp., includes Tritaxis ?fusca and unidentified Tritaxis spp. Depth Planorbulina acervalis Placopsilina cf. bradyii Rotaliammina sp. Tritaxis ?fusca Cibicides spp. Spirillina vivipara Cornuspiramia adherens/antillarum Acervulina inhaerens Unid. Miliolidae Homotrema rubrum Gypsina globularis Hemisphaerammina spp. Gypsina plana Discorbis bertheloti Carpenteria utricularis 1995 1995 1995 1995 1995 1995 1995 Mean 15 30 73 88 213 264 267 105 67 4 11 5.5 0.6 1 27.8 12.25 7.4 6.8 6.6 0 0 0 4.7 0 0 0 0.2 10 14.6 7.8 4.6 0 0.4 13 13.4 0.25 0 0.6 3.9 4.25 5.6 4.2 3.6 4 1 1.8 3.4 1 1.2 6.2 3.8 1 0 0 1.8 1.25 7.4 2.8 1.6 0 0 0 1.8 7 5.6 0 0 0 0 0 1.8 9.75 0.4 0 0 0 0 0 1.4 3.25 0.8 4.6 0 0 0 0 1.2 3.75 1.4 2 1.2 0 0 0 1.2 1.5 0.4 0.2 0.8 0.5 0.2 0.6 0.6 2.75 0.6 0.8 0 0 0 0 0.6 3.75 0 0 0 0 0 0 0.5 0.75 0 1.4 0.4 0 0 0 0.3 Table 8 Mean abundance per cm2 of the top fourteen species of foraminifera that encrust or attached to Telescopium shells collected in 1999, AA Transect, Lee Stocking Island, Bahamas. Note: Cibicides spp. does not include Cibicides lobatulus and Cibicides refulgens; Cornuspiramia spp., includes: Cornuspiramia cf. adherens and Cornuspiramia cf. antillarum. Year Depth (m) Cibicides spp. Bdelloidina ?aggregata Gypsina plana Ataxophragmoides sp. Carpenteria balaniformis Cibicides lobotulus Discorbinellinae Biarritzina sp. Cornuspiramia spp. Discorbis bertheloti Amphistigina gibbosa Cibicides refulgens Gypsina globulus Gypsina vesicularis 1999 1999 1999 1999 1999 1999 Mean 15 30 88 213 264 267 0 0.8 1.4 0.6 21 0 3.9 0 6 2.4 2.4 1.9 0 2.1 11.6 2 1 0 0 0 2.4 0 1.4 1.4 1.8 0.2 0 0.8 0 0.4 0 0.6 0.8 0 0.3 0.2 0 0 0 1.4 0 0.2 0 0 0 0.2 0.6 0 0.1 0 0 0 0 0.8 0 0.1 0 0 0 0 0.8 0 0.1 0 0 0 0 0.6 0 0.1 0.2 0 0 0 0.2 0 0.06 0.2 0 0 0 0.1 0 0.03 0.2 0 0 0 0 0 0.03 0.2 0 0 0 0 0 0.03 S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 Year S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 341 Fig. 6. Depth ranges of the average number of encrusting foraminifera on Telescopium shells after two years on the sea floor. The width of the bars represents the average number of individuals of each species. Foraminifera with very low occurrences and unclear taxonomic affiliation are not depicted on these figures. Spirillina vivipara is one of the few foraminifera whose life cycle is known. At least twelve young can be asexually produced from one individual, and these young can pair up and produce six young each (Meyers, 1933). Thus, from one founder S. vivipara, many individuals can be produced. Just a few founder S. vivipara may have generated most of the individuals that were present on our experimental shells. Dispersal in this species could be limited because it does not produce biflagellated gametes, rather, the gametes are amoeboid and break out of a cyst (Meyers, 1938) suggesting that S. vivipara could be localized in their distributions, as they appear to be in our samples, unless their tests, amoeboid gametes, or asexually-produced propagules are moved by tidal currents, storm activity or other factors. 4.4.3. Shelf/slope break encrusting foraminiferal guild (73–88 m) The common members of the shelf/slope break guild included calcareous and agglutinated foraminifera. In the first year, only two Fig. 7. Depth ranges of encrusting foraminifera on Telescopium shells after six years on the sea floor. The width of the bars represents the average number of individuals of each species occurring at each depth over the five deployed shells at each depth (these are total pooled raw numbers from the five shells, not corrected for surface area). Foraminifera with very low occurrences and unclear taxonomic affiliation are not depicted on these figures. 342 S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 groups of encrusting species were common, Cornuspiramia adherens/ antillarum and Tritaxis ?fusca (Table 9). By the second year, Cornuspiramia was not as common, but T. ?fusca increased its abundance six times than that reported for 1994. In 1995, these two species were also joined by Amphistegina gibbosa, Cibicides refulgens, Gypsina globularis, Homotrema rubrum, Placopsilina cf. bradyii, Planorbulina acervalis, and Spirillina vivipara. The species that were common in 1995 were also common in 1999, joining Biarritzina carpenteriaeformis and Carpenteria utricularis. Of these foraminifera, only A. gibbosa is an attached form that possesses photobionts (Hallock, 1981). Amphistegina gibbosa occurs in reefs, and is (or was) one of the most abundant photosymbiont-bearing foraminiferan in tropical habitats around the globe (Williams et al., 1997). Amphistegina ranges from shallow water to 120 m (Hallock, 1999). It reproduces asexually in the spring (Hallock, 1999), so propagules should have been present when we deployed our experiments in 1993. However, off Florida in 1993, the juveniles of this species were anomalously missing (Williams et al., 1997), and thus, the propagules may not have been available to settle on our experiments. The A. gibbosa population decline may stem from an increase of solar irradiance (UVB radiation; Williams et al., 1997). The recovery of the shallow-water A. gibbosa populations off Florida has been slow, while deeper water A. gibbosa recovered faster. Williams et al. (1997) findings may explain why A. gibbosa were more common in our shelf/slope break sites in 1995 and 1999, than at shallower sites. Biarritzina is a cosmopolitan tropical genus (Loeblich and Tappan, 1988) and is known to encrust valves of the tiny brachiopod, Tichosina floridensis, located in 119 m off Florida (Zumwalt and DeLaca, 1980). Not much is known about Biarritzina, but it is most likely a suspension feeder or is a commensal on brachiopod or other filter-feeding organisms (see Zumwalt and Delaca, 1980). In our study, Biarritzina carpenteriaeformis was very rare in 1994, with one Fig. 8. Principle component plots of foraminifera encrusting Telescopium shells collected in year six. The analysis is based on the total community of foraminifera and their abundance per square centimeter of shell area. A) Shells from below the photic zone (circles) plot higher on component one than all other shells. The separation of photic from aphotic shells is likely based on greater abundance of foraminifera within the photic zone. Component two separates shells from 88 m from other shells based on a suite of foraminifera that peak in abundance at 88 m. B) Component three plots the shallowest encrusters on shells (15 m) highest on the graph and 33 m plots negatively. C) Plotting component 2 vs. component 3 results in the three photic zone sites being plotted in three separate quadrants of the graph. S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 occurrence at the deepest site (267 m). In 1995, one B. carpenteriaeformis was present at both the 88 m and 267 m sites, but in 1999, B. carpenteriaeformis became common at 88 m, with a rare occurrence below this depth. One individual also occurred at the shallowest site (15 m). It appears that this species is a shelf/slope break and deeper species. Carpenteria is a cosmopolitan tropical genus (Loeblich and Tappan, 1988), and is known from shallow water (b10 m) in cryptic habitats (Martindale, 1992) and from fore-reef sites (Perry, 1999). It is an important contributor to reef framework by encrusting cryptic recesses (Perry, 1999). In our study, Carpenteria utricularis was rare between 15 and 33 m in 1994; in 1995 it was still rare, but it had colonized the shelf/slope break; in 1999 it was somewhat common at the shelf/slope break and occurred at no other site during this time. Based on our samples, it is quite possible that this species is not a good spatial competitor and is very patchy in its distribution. 343 Tritaxis is thought to only occur off England (Loeblich and Tappan, 1988). Clearly Tritaxis is widespread in tropical and polar regions (this study; Schönfeld, 1997; Wissak and Rüggeberg, 2006; Martin, 2008) and may be just overlooked. Tritaxis fusca encrusts foraminiferal tests on the outer shelf off Washington, USA (Martin, 2008). Wissak and Rüggeberg (2006) found that T. fusca was a common encrusting foraminifera on PVC and carbonate substrates, but was restricted to waters between 5 and 17 m. In our study, T. ?fusca was widely distributed, from 33 m to 267 m within the first year, although it was only common at the shelf/slope break. In 1995, it was very abundant at the shelf/slope break sites, although it occurred at all sites except 15 m. In 1999, T. ?fusca occurred at all depths, with a peak abundance at 88 m and was very common below this depth. It appears that T. ? fusca's center of abundance is at the shelf/slope break, with recruitment to other depths from this area. Nothing is known about its reproductive biology or its dispersal mechanisms. Fig. 9. Principle component plots of foraminifera encrusting Strombus shells collected in year six. The analysis is based on the total community of foraminifera and their abundance per square centimeter of shell area. A) Encrusting foraminifera from below the photic zone (circles) plot in a tight group separate from all photic zone encrusters. The separation of photic from aphotic encrusters is likely based on greater abundance of foraminifera on the shallow-water shells. Component two separates 88-m shell substrates from other shells based on a suite of foraminifera that peak in abundance at 88 m. B) Component three plots the shallowest shells (15 m) highest on the graph and 33 m plots negatively. This is the same trend as seen on Telescopium shells (Fig. 9). C) Plotting component 2 vs. component 3 again results in the three photic zone sites being plotted separately, but the deep-water shells and the 15 m shells seem to overlap in this plot. 344 S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 Table 9 Common (N20 individuals per species) encrusting foraminifera species guilds with depth and time, carbonate platform and slope, Lee Stocking Island, Bahamas. 1995 1999 Acervulina inhaerens Discorbis bertheloti Acervulina inhaerens Cibicides lobatulus Placopsilina cf. bradyii Planorbulina acervalis Unid. Miliolidae Cibicides refulgens Discorbis bertheloti Dyocibicides ?biserialis Gypsina plana Homotrema rubrum Neoconorbina terquemi Planorbulina acervalis Unid. Miliolidae Unid. Textularidae I. Inner shelf (15 M) 1994 Acervulina inhaerens Cornuspiramia cf. adherens/antillarum Discorbis bertheloti Gypsina globularis Planorbulina acervalis Unid. Foram A (possibly new recruits of P. acervalis) II. Outer shelf (33 M) 1994 Acervulina inhaerens Placopsilina cf. bradyii Planorbulina acervalis Acervulina inhaerens Cibicides refulgens Cornuspiramia cf. adherens/antillarum Gypsina plana Homotrema rubrum Placopsilina cf. bradyii Planorbulina acervalis Acervulina inhaerens Cibicides refulgens Cibicides lobatulus Discorbis bertheloti Neoconorbina terquemi Placopsilina cf. bradyii Planorbulina acervalis Spirillina vivipara Unid. Miliolidae III. Shelf/slope break (73–88 M) 1994 Cornuspiramia cf. adherens/antillarum Tritaxis ?fusca Amphistigina gibbosa Homotrema rubrum Placopsilina cf. bradyii Planorbulina acervalis Spirillina vivipara Tritaxis ?fusca Biarritzina carpenteriaeformis Carpenteria balaniformis Cibicides refulgens Cornuspiramia cf. adherens/antillarum Gypsina globularis Haplophragminoides Homotrema rubrum Placopsilina cf. bradyii Planorbulina acervalis Spirillina vivipara Tritaxis ?fusca Unid. Textularidae Unid. Miliolidae IV. Upper bathyal (213 M) 1994 Cibicides refulgens Rotalliammina sp. Unid. Textularidae Cibicides refulgens Planorbulina acervalis Cibicides refulgens Planorbulina acervalis Rotalliammina sp. Tritaxis ?fusca Unid. Textularidae V. Middle bathyal (264, 267 M) 1994 Cibicides refulgens Rotalliammina sp. Unid. Textularidae Cibicides refulgens Rotalliammina sp. Unid. Textularidae Cibicides refulgens Placopsilina cf. bradyii Planorbulina acervalis Rotalliammina sp. Tritaxis ?fusca Unid. Textularidae 4.4.4. Slope encrusting foraminiferal guild (213–267 m) At this depth, there was a mix of calcareous and agglutinated taxa (Table 9). Cibicides refulgens and Planorbulina acervalis were the common calcareous species at this depth, and were discussed previously. The agglutinated taxa, in contrast to the calcareous taxa, are not as well known biologically. The genus Haplophragmoides is cosmopolitan, while Rotaliammina appears to be subtropical to tropical in distribution (Loeblich and Tappan, 1988). In our study, Haplophragmoides had variable colonization on the experimental shells. In 1994, this genus was very rare, occurring only between 213 and 267 m. In 1995 it was still rare, but only occurred at 267 m; in 1999, it was present at all depths, with its peak in abundance at the shelf/slope break. It appears that this species, or species complex, has episodic reproduction and doesn't recruit readily to new substrates. In contrast, Rotaliammina, with its orange color and agglutinated spicules, was very common at 213 m within the first year. By the second year, it was very common at all bathyal sites between 213 and 267 m. In 1999, it was still common at those sites, and was not present at depths shallower than 213 m. Rotaliammina, then, is a good indicator of bathyal depths. 4.5. PCA of foraminiferal species distribution with depth The total foraminiferal assemblage, when examined by PCA, indicates three otherwise relatively similar euphotic localities (15 m, 33 m, and 88 m) that can be distinguished on foraminifera distribution alone. Between these shelf and shelf/slope break sites, the taxonomic make-up of the foraminiferal community seems to drive the PCA-component loading. In particular, taxa that have a peak in abundance at a specific depth, drive the clustering of the samples. For example, Cornuspiramia and Tritaxis are most frequently found at 88 m, even though their overall range spans all three shallow sites for the former and the entire depth range of the study for the latter. Taxa with preferences for given depths are weighted most heavily by the analysis, for instance, 88-m encrusting foraminifera plot separately from either 15-m or 33-m foraminifera. The results of the PCA indicate that there were no discernable differences among the encrusting foraminiferal communities on shells from the three deepest (aphotic) sites (213 m, 264 m, and 267 m) despite differences in bottom type (hard ground at 213 m and 267 m vs. fine carbonate sand at 264 m) and differences in species abundance. The most likely factor controlling the split between deep and shallow samples is the overall abundance of foraminifera and species composition that are in turn influenced by light, nutrient levels, water energy, and time. 5. Concluding summary 5.1. Alpha diversity of encrusting foraminifera, stability, dispersal and successional bypass Diversity patterns for encrusting foraminifera at Lee Stocking Island were similar to those found in reef macroinvertebrate studies, where high species diversity can occur in outer shelf and shelf/slope break habitats, but declines below 100 m in water depth (Huston, 1985; Liddell and Ohlhorst, 1988). Foraminiferal species richness was highest in the photic zone, and decreased below the shelf/slope break (88 m) at Lee Stocking Island, Bahamas. The patterns reported here for encrusting foraminifera nearly parallels coral species diversity across shelf-to-slope transects in tropical regions. For example, coral diversity fluctuates in very shallow waters (~15 m), is highest at 30 m, and decreases below this depth (Huston, 1985). This change in coral distribution roughly parallels the distribution of the photic zone, as many coral species harbor photosymbionts (Huston, 1985; LaJeunesse, 2002; van Woesik et al., 2010). Unlike corals, most of the encrusting species in our study did not possess photosymbionts and may be cueing in on food resources tied to the photic zone. Previously, little was known about encrusting foraminiferal species diversity (α), and species turnover (β) and how these diversities vary with depth and time. Knowing such information could provide more coherent paleoecological, paleoenviromental and paleoclimatic reconstructions of these organisms (Debenay and Payri, 2010). We found that the units of species diversity (α) remained relatively the same throughout the study (that is, 33–35 species), with a majority of the species becoming common (N20 individuals) and a S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 few species becoming very abundant (N100 individuals) with time. Thus, there appears to be a remarkable stability in taxonomic units (i.e., counts of species) within the first six years of this study, regardless of the dominance of a number of encrusting species. Species diversity decreases with depth after 213 m, and this decrease is not related to the loss of photosymbiont-bearing taxa because only two taxa in this entire study are thought to harbor photosymbionts (i.e., Amphistegina gibbosa, and Gypsina plana). There is a remarkable increase in the depth range of individual species with time: Many taxa that appeared to be limited to the shallow photic zone in year two had spread to sites below 100 m by year six. Reasons for this long-term range extension can only be speculated. Dispersal modes for attached foraminifera are limited to the release of biflagellate gametes into the water column and alternatively, some taxa have a meroplanktic life stage (Alve, 1999). Both of these methods lead to short-lived propagules, so only local dispersal is expected. Thus the jump in species richness from year 2 to year 6 may be the result of 1) slow recruitment at depth due to a smaller pool of foraminifera producing new individuals at any one time, 2) the ocean thermocline at 100 m acting as a semi-permeable filter to the introduction of shallow-water propagules, or 3) intermittent introduction of reef rubble and debris into deep water by hurricanes or slumps and thereby transporting encrusters with them (that may then reproduce and colonize new substrates at depth). Alternatively, colonization of new substrates by foraminiferal propagules may be faster in areas with high current velocities (Alve, 1999). In these areas, foraminiferal communities may bypass the typical ecological successional stages starting with pioneer species; pioneer communities are more likely to occur in areas with lower currents, and therefore, slower dispersal times (Alve, 1999). It appears that this relatively “fast” dispersal capability is occurring with the encrusting foraminifera in our study, suggesting that the earliest pioneer stages are by-passed, favoring diversity that is maintained by ecological incumbents, spatially and temporally. Whatever the mechanism, the importance of long-term studies cannot be overemphasized. 5.2. Taxonomic composition with depth differs from previous research in this region Our taxonomic composition of encrusting foraminifera differ from those reported by Choi and Ginsburg (1983) and Choi (1984) who reported that Planorbulina, Homotrema rubrum and Gypsina were the pioneer species that encrusted cryptic coral reef habitats. Two of those taxa, Planorbulina and Homotrema, were common in our first year deployment period on the experimental molluscan substrates, but Gypsina plana was rare. Additionally, H. rubrum, Planorbulina spp., G. plana and Carpenteria are important secondary framework builders in reef systems (Perry and Hepburn, 2008). We found that this secondaryframework group took time to assemble, and did not occur within the first year: Planorbulina and Homotrema were common in year one; Planorbulina common in year two; and G. plana and Carpenteria were common in year six, suggesting a successional or community replacement change over the time period of our study for these secondary framework builders. Choi (1984) reported that a climax stage for coral rubble includes overgrowth by tunicates. In our study, G. plana was the end member colonizer of these shell substrates and not tunicates. Temporal and biogeographical differences in reef associations may exist, and this needs to be furthered addressed to understand the development of secondary framework contributors to reef ecosystems. 345 the encrusting foraminifera in this study do not possess photosymbionts and the very abundant foraminifera (Cibicides refulgens, Planorbulina acervalis) do not appear to be limited by light. At 268 m, the deepest site in this study, the light intensity was expected to be 0.0005% of the surface, well below the photic zone for this region (Liddell and Ohlhorst, 1988). However, in other Caribbean studies, light sensitive organisms, such as coralline algae and bioeroding cyanobacteria (Ostreobium) can occur to 268 m and 210 m, respectively (Littler et al., 1985). Rather, a steep decline in species diversity below the shelf/slope break could be related to a lack of trophic resources (e.g., diatoms), or other factors. Abundant species (C. refulgens, P. acervalis) that are putatively suspension feeders colonized the bathyal sites by six years, and it may be that long-time spans (N5 years) are needed to capture the full extent of the species in this deeper region; but, there must be food resources at this depth, perhaps brought in with deep geostrophic currents and the Exuma gyre. By years, the highest turnover of taxa occurred between the first and the sixth year (1994/1999: 15 taxa) and between the first and the second year (1994/1995: 13 taxa). Species turnover reflects approximately 25–40% of the encrusting foraminiferal assemblage in these waters, depending on time on the seafloor, with greater species turnover occurring within the first two years of recruitment to the experimental shells. 5.4. Jost's, (2006, 2007) method was one of the best metrics for assessing β diversity The Jost beta diversity metric based on the Shannon Entropy Index equivalent (βJost; Jost, 2006, 2007) in addition to βcounts (based on actual counts of species) were deemed the best indicators of species turnover in this study. Based on βJost, all of the depths had unique species associations for all three sample periods. Between years, the βJost indicated that the greatest species turnover occurred in the first year and between the first and sixth year of the study, a similar result as βcounts. The Jost method takes into consideration the abundance of the species, and is based on equivalents which, if all species are equitably distributed, will give true species diversity. If there are dominant species, then βJost indicates which time periods were more affected by dominance. We found, for low evenness assemblages, that the approximate number of dominant species was indicated by the βJost metric; it did not work for high evenness assemblages, only stating which depths (or sites) were unique. A modified version of Jost's Shannon Entropy equivalent was used on Pleistocene and Late Quaternary benthic foraminifera from the eastern Caribbean Sea to discriminate diversity differences between biozones (Wilson, 2011; Wilson and Costellow, 2011). 5.5. Abundance and density of encrusting foraminifera decreases below the shelf/slope break For both one and two years on the sea floor, the shallowest site (15 m) had the highest abundance of encrusting foraminifera. After six years on the sea floor, the maximum amount of individuals doubled from the early deployments, and the highest abundance on the shells occurred at 33 m and declined steeply below the 33 m depth. Density of encrusting foraminifera changed between two and six years of exposure on the sea floor. After two years of deployment, ten species of encrusting foraminifera made up at least one individual/cm 2 with Planorbulina sp. being the most abundant. After six years, a different assemblage occurred, dominated by Cibicides spp. 5.3. Species turnover (beta diversity) by depth and year 5.6. A new species of bioeroding foraminifera was discovered By depth, beta diversity (βcounts) was highest between the shelf/slope break and the upper bathyal, where species composition changed with the addition of agglutinated foraminifera. Except for one calcareous species (Amphistegina gibbosa and perhaps Gypsina plana), all Discorbis bertheloti made very small (b0.001 mm) holes in cryptic regions of the experimental gastropod shells. This species was restricted to 15–33 m on the Lee Stocking carbonate platform, 346 S.E. Walker et al. / Palaeogeography, Palaeoclimatology, Palaeoecology 312 (2011) 325–349 although it is known to have a wider geographic distribution based on its occurrence within sediments. long-term studies are needed to assess the spatial and temporal resolution of encrusting foraminifera across biogeographic provinces and shelf-to-slope regions. 5.7. Dispersal capabilities and time influence invasibility of encrusting foraminifera Dispersal mechanisms are not well known for benthic foraminifera (Alve, 1999; Goldstein, 1999). Some species may have a passive dispersal phase where the juveniles (zygotes, embryonic juveniles which have the same density as sea water) may account for longerrange dispersal; and, adult tests may be advected by water currents (reviewed by Alve, 1999). Shorter-range dispersal (within meters) for other benthic foraminifera can be mediated by biflagellated gametes (Alve and Goldstein, 2003). From our study, some species are much better at dispersing than others, and must have propagules in the water column at all times or have high reproductive rates. Planorbulina acervalis and Cibicides refulgens, among others, appear to be highly invasive foraminifera with relatively rapid colonization rates. They act like opportunistic species, but unlike opportunistic species, they maintain their spatial distribution and increase in population size over time. Thus, these species may be opportunistic ecological incumbents, where they invade new territory relatively quickly with high numbers of propagules, but rather than have population crashes like true opportunistic species, they increase their abundance through time. Some encrusting foraminifera appear to have a source area with high relative abundance, and over time, spread to shallow and deeper water from that source area. For example, Tritaxis ?fusca, has high abundance at the shelf/slope break and spreads to both shallow and deeper water over the years of our study, but still maintained its highest abundance at the shelf/slope break. These recruitment patterns would not have been seen without the long-term experimental arrays distributed along a bathymetric gradient. 5.8. Encrusting foraminifera have important applications for the fossil record Out of 16 genera of encrusting foraminifera found in this study, two genera extend back to the Paleozoic, seven extend to the Mesozoic, three have records to the early Cenozoic; only four are known from the Recent and this may be because they haven't been found as yet in the fossil record (Table 10). Given the limited coverage of encrusting foraminifera in the literature, many of these fossil ranges will be extended as more work is done on them. Therefore the utility of modern encrusting foraminiferan communities to studies of paleodepth, paleoclimate, and paleoecology have great potential but Table 10 Known stratigraphic ranges of the encrusting foraminiferal genera in this study. All ranges are derived from the Treatise on Invertebrate Paleontology or from Loeblich and Tappan (1988) unless otherwise noted. Genus Stratigraphic range Hemisphaerammina Haplophragmoides Placopsilina Bdelloidina Rotaliammina Tritaxis Spirillina Cornuspiramia Discorbis Neoconorbina Cibicides Planorbulina Acervulina Gypsina Amphistegina Carpenteria Middle Devonian–Recent Carboniferous–Recent Middle Jurassic–Recent Paleocene–Recent Recent Recent Triassic–Recent Recent Eocene–Recent Recent Cretaceous–Recent Eocene–Recent Jurassic–Recent (Hanzawa, 1939) Cretaceous–Recent Upper Cretaceous? Eocene–Recent Upper Cretaceous–Recent 5.9. Encrusting foraminifera are an underutilized resource in deciphering the environment of deposition of fossil hard-skeletal substrates Four guilds of encrusting foraminifera composed of abundant and common species delineated depth distributions in this carbonate platform-to-slope region. Shells from four different depths (15 m, 33 m, 88 m, and deeper than 213 m) were distinguished by foraminiferal species that reached their peak in abundance at specific depths. Similar distributional patterns are known for reef macroinvertebrates from subtropical to tropical carbonate regions (Liddell and Ohlhorst, 1988). The advantage of the encrusting foraminiferal communities is that these communities develop over time, which can give a time stamp to skeletal debris that enter the fossil record. These encrusting species and their abundance are also useful as paleodepth and paleoenvironmental indicators. And, lastly, because they cement to skeletal or other surfaces they have an excellent chance of entering the fossil record with their host substrate providing important ecological forensic information beyond which their host substrate could provide. 5.10. Calcifying foraminifera are essential to reefs Calcifying foraminifera were the first to colonize experimental molluscan substrates within the first year in shallow habitats, with colonization offshore in subsequent years; agglutinated foraminifera become more common after the first year. Many of these calcifying foraminifera are important in building and maintaining coral reef frameworks, from shallow to shelf/slope break depths; some are important for carbonate nodule formation. One attached species, Amphistegina gibbosa, harbors photosymbionts that are sensitive to increased ultraviolet light, and this species may shift its distribution to deeper water in response to the intensity of UVB (Williams et al., 1997). Therefore, these important reef associates could be greatly affected by the predicted warming of oceans and acidification scenarios, and may be just as sensitive to these predicted changes as their planktonic counterparts (see Moy et al., 2009; Lombard et al., 2010). Not only are corals in peril, but all the carbonate-secreting organisms that contribute to the formation of reefs, including the important encrusting foraminifera. Acknowledgments Submersible work for this study was made possible through a series of grants from the National Science Foundation (EAR-0345618 and EAR-9909317) and NOAA's National Undersea Research Program at the Caribbean Marine Research Center. We are deeply indebted to the pilots and support crews of the Nekton Delta, Clelia and Nekton Gamma submersibles. We thank the CMRC staff at Lee Stocking Island and the NURP personnel from CMRC who made our field program possible. We also thank S. Goldstein, R. Martin, and P. 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