Visualizing the Genetic Landscape of Arabidopsis Seed
Performance
by Ronny Viktor Louis Joosen, Danny Arends, Leo Albert Jan Willems, Wilco
Ligterink, Ritsert C. Jansen, and Henk W.M. Hilhorst
Plantphysiol
Volume 158(2):570-589
February 3, 2012
©2012 by American Society of Plant Biologists
Overview of traits in this study and the harvest(s) used for the measurementsThe indicated color
code is used in all figures throughout this paper.
Joosen R et al. Plantphysiol 2012;158:570-589
©2012 by American Society of Plant Biologists
R/qtl output for the effect of 100 mm NaCl on the maximum germination without stratification.
Joosen R et al. Plantphysiol 2012;158:570-589
©2012 by American Society of Plant Biologists
Correlation between all trait values (bottom left panel) and between all LOD profiles (top right
panel).
Joosen R et al. Plantphysiol 2012;158:570-589
©2012 by American Society of Plant Biologists
A clustered heat map showing the LOD profiles of the measured traits.
Joosen R et al. Plantphysiol 2012;158:570-589
©2012 by American Society of Plant Biologists
Cytoscape marker-trait network.
Joosen R et al. Plantphysiol 2012;158:570-589
©2012 by American Society of Plant Biologists
Epistatic interaction network.
Joosen R et al. Plantphysiol 2012;158:570-589
©2012 by American Society of Plant Biologists
Genome scan for QTL×E effects for seed germination.
Joosen R et al. Plantphysiol 2012;158:570-589
©2012 by American Society of Plant Biologists
Confirmation of QTLs with a HIF approach.
Joosen R et al. Plantphysiol 2012;158:570-589
©2012 by American Society of Plant Biologists
Different increases in seed size during the start of imbibition for Bay-0 (green), Sha (blue),
HIF103/Bay-0 (red), and HIF103/Sha (purple) seeds.
Joosen R et al. Plantphysiol 2012;158:570-589
©2012 by American Society of Plant Biologists