Appendix : List of spots identified in the sixth week leaves of B. alboglabra by using LC/MS/MS and bioinformatic analysis. Protein
were classified according to the main the functions obtained from UniProt (www.uniprot.org)
Spot
Protein
no.
Name(s)
1
gi|15234637
Description
PSBQ/PSBQ-2/PSII-Q
MW/ pI
24.63/9.72
Peptide
%
match
Coverage
3
16
Sequences
K.AWPYVQNDLR.L
Total score
170
Function
Photosynthesis
(PHOTOSYSTEM II SUBUNIT Q-
R.YDLNTVISAKPK.E
and
2); calcium ion binding
K.YYSETVSSLNNVLAK.L
photorespiration
[Arabidopsis thaliana]
gi|157890948
oxygen-evolving enhancer protein
24.33/9.70
4
25
3-2 [Brassica rapa]
K.AWPYVQNDLR.L
91
Photosynthesis
K.LFDTINNLDYAAK.K
and
R.FYLQPLPPTEAVAR.A
photorespiration
K.IGPPPPPSGGLPGTDNSDQ
AR.D
2
gi|5732201
Photosystem I subunit II precursor
22.34/9.81
5
28
Arabidopsis thaliana
K.AQVEEFYVITWNSPK.E
214
Photosynthesis
K.EQIFEMPTGGAAIMR.E
and
R.EGPNLLK.L
photorespiration
R.VFPNGEVQYLHPK.D
K.NVSPIEVK.F
gi|131166
Full=Photosystem I reaction center
22.90/9.71
4
20
K.EQIFEMPTGGAAIMR.Q
150
Photosynthesis
subunit II, chloroplastic; altname:
R.QGPNLLK.L
and
Full=Photosystem I 20 kda subunit;
K.INYQFYR.V
photorespiration
Short=PSI-D; Flags: Precursor
R.VFPNGEVQYLHPK.D
3
gi|15228674
peptidyl-prolyl cis-trans isomerase,
28.19/8.83
6
29
K.VYFDVEIGGEVAGR.I
chloroplast / cyclophilin / rotamase /
R.IIKDFMIQGGDFTEGNGTG
cyclosporin A-binding protein
GISIYGAK.F
(ROC4) [Arabidopsis thaliana]
K.FEDENFTLK.H
222
Stress response
117
Photosynthesis
K.HVVFGQVIEGMK.L
R.TLESQETR.A
R.AFDVPK.K
4
gi|119720784
ribulose-1,5-bisphosphate
20.26/8.23
4
21
K.EVDYLLR.N
carboxylase/oxygenase small
R.YWTMWK.L
and
subunit precursor [Brassica rapa]
R.IIGFDNNR.Q
photorespiration
K.KFETLSYLPDLTEVELGK.E
gi|79013990
chloroplast ribulose-1,5-
20.25/8.23
4
21
117
Photosynthesis
bisphosphate carboxylase/oxygenase
and
small subunit precursor [Brassica
photorespiration
napus]
gi|119720808
ribulose bisphosphate carboxylase
18.43/8.23
4
24
117
[Brassica rapa]
Photosynthesis
and
photorespiration
5
gi|131391
Oxygen-evolving enhancer protein
27.91/6.84
3
11
K.AATSFSVA.-
107
Photosynthesis
2, chloroplastic; Short=OEE2;
R.EVEYPGQVLR.Y
and
AltName: Full=23 kDa subunit of
K.HQLITATVNGGK.L
photorespiration
oxygen evolving system of
photosystem II
6
gi|45451864
chloroplast carbonic anhydrase
36.18/5.43
2
5
precursor [Thlaspi caerulescens]
R.NIANMVPPFDK.V
41
K.GGYYDFIK.G
C-compound and
carbohydrate
metabolism
gi|115469918
Os06g0712500 [Oryza sativa
50.90/9.22
1
1
R.IYSVLAK.S
34
Unidentified
(japonica cultivar-group)]
7
PSBO2_AR
Oxygen evolving enhancer protein 1
ATH
2 chloroplast precursor OEE1 33
34.10/5.81
2
10.88
(K)FCFEPTSFTVK(A)
10.5351
(R)VPFLFTVK(Q)
Photosynthesis
and
kda subunit of oxygen evolving
photorespiration
system of photosystem II OEC 33
kda subunit 33 kda thylakoid
membrane protein
gi|49359169
photosystem II protein [Brassica
36.80/6.78
9
28
oleracea]
K.FLVPSYR.G
311
Photosynthesis
R.VPFLFTVK.Q
and
R.LTYDEIQSK.T
photorespiration
K.NTAASVGEITLK.V
R.GDEEELSKENVK.N
K.QLDASGKPDNFTGK.F
R.GGSTGYDNAVALPAGGR.
G
K.EEDGIDYAAVTVQLPGGE
R.V
R.GGSTGYDNAVALPAGGRG
DEEELSK.E
8
37574460
79329946
Ribulose 1 5 bisphosphate
48.81/6.58
1
2.27
(R)DPGLLLHIHR(A)
13.60
Photosynthesis
carboxylase oxygenase Pogonatum
and
aloides
photorespiration
APE2 ACCLIMATION OF
43.47/10.11
1
2.51
(K)LRRPIGAIHR(Q)
10.91
Photosynthesis
PHOTOSYNTHESIS TO
and
ENVIRONMENT triose phosphate
photorespiration
transmembrane transporter
Arabidopsis thaliana
15233246
RNA recognition motif RRM
65.96/8.43
1
1.68
(K)DSVSVAIALK(L)
-22.48
Protein
containing protein Arabidopsis
metabolism
thaliana
gi|1346967
Ribulose bisphosphate carboxylase
52.93/5.88
16
25
large chain
K.LNYYTPEYETK.D
497
Photosynthesis
K.DTDILAAFR.V
and
R.IPPAYTK.T
photorespiration
K.TFQGPPHGIQVER.D
R.GGLDFTKDDENVNSQPFM
R.W
K.DDENVNSQPFMR.W
R.LSGGDHVHAGTVVGK.L
R.ESTLGFVDLLR.D
R.DLAVEGNEIIR.E
K.EITFNFPTIDK.L
K.EITFNFPTIDKLDGQD.9
168035167
predicted protein Physcomitrella
12.20/9.41
1
11.50
patens subsp patens
115453311
Os03g0386600 Oryza sativa
(R)ALEDGASVTLVAR(N)
12.91
Unidentified
10.91
Amino acid
Phosphoryl STY (9)
6.12/12.05
1
10.91
(R)ASYLSR(S)
japonica cultivar group
148470490
maturase K Myriophyllum
metabolism
59.11/10.03
1
1.20
(K)ASYISR(Y)
-5.05
balladoniense
gi|5708095
10
gi|15221119
ATP synthase gamma chain,
metabolism
33.30/6.12
3
11
168006161
K.VALVVVTGDR.G
29
Photosynthesis
chloroplast precursor [Arabidopsis
K.YLEAGTLPTAK.E
and
thaliana]
R.ALQESLASELAAR.M
photorespiration
aminomethyltransferase, putative
44.42/8.55
2
6
[Arabidopsis thaliana]
11
Protein
Predicted protein Physcomitrella
patens subsp patens
R.VGFFSSGPPAR.S
123
K.IGEITSGGFSPNLK.K
54.76/6.38
1
1.43
(R)TPVERWK(Q)
Amino acid
metabolism
12.91
Unidentified
gi399942
Stromal 70 kDa heat shock-related
75.47/5.22
6
9
protein, chloroplastic
R.TTPSVVAYTK.N
151
Stress response
142
Stress response
86
Stress response
140
Photosynthesis
K.AVVTVPAYFNDSQR.T
R.IINEPTAASLAYGFER.K
K.HIETTLTR.A
R.TPVENSLR.D
K.NQADSVVYQTEK.Q
gi|6746592
heat shock protein 70 [Arabidopsis
77.06/5.13
7
10
thaliana]
R.TTPSVVAYTK.S
K.AVITVPAYFNDSQR.T
R.IINEPTAASLAYGFER.K
K.HIETTLTR.G
R.TPVENSLR.D
R.IPAVQDLVR.K
K.NQADSVVYQTEK.Q
12
gi|1755154
germin-like protein [Arabidopsis
21.85/6.81
2
11
thaliana]
13
gi|37361605
ribulose-1,5-bisphosphate
K.NPDQVTENDFAFTGLGK.A
K.GVLGGTN.-
46.56/6.94
4
8
K.TFQGPPHGIQVER.D
carboxylase/oxygenase large subunit
R.ESTLGFVDLLR.D
and
[Aloe plicatilis]
(R.EDTLGFVDLLR.D
photorespiration
R.VALEACRQAR.N
gi|1346967
Ribulose bisphosphate carboxylase
52.92/5.88
7
15
large chain
K.LNYYTPEYETK.D
112
Photosynthesis
K.ALAALR.L
and
K.TFQGPPHGIQVER.D
photorespiration
K.SQAETGEIK.G
R.ESTLGFVDLLR.D
R.DLAVEGNEIIR.E
K.EITFNFPTIDK.L
14
gi|3057150
CPHSC70-2EAT SHOCK
PROTEIN 70-2 (CHLOROPLAST
26.91/8.86
2
9
K.IDITVPTGAQIIYSK.Y
R.ASDVMAILS.-
44
Stress response
HEAT SHOCK PROTEIN 70-2);
ATP binding / unfolded protein
binding [Arabidopsis thaliana]
gi|15242045
CPN20 (CHAPERONIN 20);
26.79/8.86
2
9
27.48/5.40
1
5.84
44
Stress response
12.91
Glycolysis and
calmodulin binding [Arabidopsis
thaliana]
15
TPIS_STELP
Triosephosphate isomerase
(K)VASPEQAQEVHVAVR(D)
cytosolic TIM Triose phosphate
gluconeogenesis
isomerase
gi|81157955
triosephosphate isomerase
26.70/5.09
1
5
K.VVVAYEPVWAIGTGK.V
71
cytoplasmic type [Chlorella
Glycolysis and
gluconeogenesis
pyrenoidosa]
16
gi|166700
Fe-superoxide dismutase
25.41/6.30
2
6
R.AYVDNLKK.Q
31
Stress response
23
Protein
R.DFTSYEK.F
gi|238478643
myb family transcription factor
41.51/6.56
1
3
K.QQPHFFDFLGLGTA.-
(MYB117) [Arabidopsis thaliana]
17
metabolism
gi|226532092
harpin-induced protein [Zea mays]
22.67/9.08
1
5
R.QSGSGLANLPVR.F
18
Stress response
gi|33285914
putative dehydroascorbate reductase
12.03/6.15
4
42
K.ALLDELEALETHLK.T
61
Stress response
[Brassica rapa subsp. pekinensis]
K.THDGPFIAGGK.V
K.VSAVDLSLAPK.L
K.ALFSLDSFEK.T
18
147818139
Hypothetical protein Vitis vinifera
53.99/6.22
1
1.28
(R)SHNNGK(R)
13.6
Unidentified
1786115
phosphoinositide specific
62.24/6.41
1
1.82
(K)ESAEEVSSLR(E)
-2.97
Cellular
phospholipase C Vigna unguiculata
communication
and signal
transduction
gi|120675
Glyceraldehyde-3-phosphate
36.90/7.70
9
28
dehydrogenase, cytosolic
K.IGINGFGR.I
305
K.YDSVHGQWK.H
Glycolysis and
gluconeogenesis
K.TLLFGEKPVTVFGIR.N
K.KVVISAPSK.D
R.AASFNIIPSSTGAAK.A
R.SSIFDAK.A
K.AGIALSDNFVK.L
K.LVSWYDNEWGYSTR.V
R.VVDLIIHMSK.A
19
147815877
hypothetical protein Vitis vinifera
25.71/9.72
1
5.69
gi|3057150
chaperonin 10 [Arabidopsis
26.91/8.86
3
14
thaliana]
(K)EDDIVGILETDDIK(D)
K.YAGTEVEFNDVK.H
12.93
Unidentified
89
Stress response
89
Stress response
K.EDDIVGILETEDIK.D
K.TAGGLLLTETTK.E
gi|15242045
CPN20 (CHAPERONIN 20);
26.79/8.86
3
15
44.71/9.77
1
2
calmodulin binding [Arabidopsis
thaliana]
20
159464355
Chloroplast stem loop binding
(R)FIGLYLAR(D)
12.50
protein Chlamydomonas reinhardtii
115488340
Os12g0420200 Oryza sativa
Protein
metabolism
41.51/8.84
1
2.40
(K)YVTFDGLAR(A)
11.94
japonica cultivar group
Cellular
communication
and signal
transduction
gi|2765081
g5bf [Arabidopsis thaliana]
42.65/8.19
7
19
R.FIGLFLSR.I
85
K.EGHQVTLFTR.G
gi|3850621
putative RNA binding protein
[Arabidopsis thaliana]
42.13/7.71
7
20
K.LETESLLQSK.G
R.EIFNISGEK.Y
Protein
metabolism
85
Protein
metabolism
K.AGGFPEPEIVHYNPK.E
gi|15217485
CRB; binding / catalytic/ coenzyme
42.59/8.19
7
19
406727
ribulose 1 5 bisphosphate
85
K.EADFTTDDMILSK.K
binding [Arabidopsis thaliana]
21
R.DQHFFASVEK.A
20.18/8.10
6
38.12
(K)KFETLSYLPDLTDVELAK(
Protein
metabolism
13.60
Photosynthesis
carboxylase oxygenase small
E)
and
subunit ribulose bisphosphate
(K)EVDYLLR(N)
photorespiration
carboxylase Brassica napus
(K)WIPCVEFELEHGFVYR(E)
Carbamidomethyl C
(4)
(R)YWTMWK(L)
(K)LPLFGCTDSAQVLK(E)
Carbamidomethyl C
(6)
(R)IIGFDNNR(Q)
119720808
ribulose bisphosphate carboxylase
18.42/8.10
6
38.89
Brassica rapa
(K)EVDYLLR(N)
12.38
(K)WIPCVEFELEHGFVYR(E)
Photosynthesis
and
Carbamidomethyl C
photorespiration
(4)
(R)EHGSTPGYYDGR(Y)
(R)YWTMWK(L)
(K)LPLFGCTDSAQVLK(E)
Carbamidomethyl C
(6)
(R)IIGFDNNR(Q)
168023194
predicted protein Physcomitrella
39.16/8.89
1
2.94
20.21/8.23
6
32
(-)DPLTLSEVVK(S)
12.91
Unidentified
patens subsp patens
gi|266891
Ribulose bisphosphate carboxylase
small chain, chloroplastic
K.VWPPVGK.K
K.KFETLSYLPDLTEVELGK.E
178
Photosynthesis
and
K.EVDYLLR.N
photorespiration
R.EHGSTPGYYDGR.Y
R.YWTMWK.L
R.IIGFDNNR.Q
22
gi|266891
Ribulose bisphosphate carboxylase
20.21/8.23
5
24
small chain, chloroplastic
K.KFETLSYLPDLTEVELGK.E
137
Photosynthesis
K.FETLSYLPDLTEVELGK.E
and
K.EVDYLLR.N
photorespiration
R.EHGSTPGYYDGR.Y
R.IIGFDNNR.Q
gi|132156
Ribulose bisphosphate carboxylase
9.60/6.10
3
35
small chain
23
115435878
Os01g0269100 Oryza sativa
34.26/4.76
1
2.48
-.ELEHGFVYR.E
88
Photosynthesis
R.EHGSTPGYYDGR.Y
and
R.IIGFDNNR.Q
photorespiration
(R)QNLSPKMR(A)
0.77
japonica cultivar group
Cellular
communication
and signal
transduction
24
gi|1346967
Full=Ribulose bisphosphate
52.92/5.88
3
5
K.DTDILAAFR.V
30
Photosynthesis
carboxylase large chain;
R.DLAVEGNEIIR.E
and
Short=RuBisCO large subunit;
K.LDGQD.-
photorespiration
Flags: Precursor
gi|2660524
ribulose-bisphosphate carboxylase
49.32/6.24
2
4
[Empodium veratrifolium]
K.DTDILAAFR.V
27
R.DLGLEGNEIIR.E
Photosynthesis
and
photorespiration
25
2695939
cytochrome B6 F complex like
9.75/5.79
1
13.19
(K)VVFVPWVETDFR(T)
10.43
Photosynthesis
protein Hordeum vulgare subsp
and
vulgare
photorespiration
gi|9843639
Rieske FeS protein [Arabidopsis
24.33/8.80
1
51
K.GDPTYLVVENDK.T
78
thaliana]
Photosynthesis
and
photorespiration
26
27764548
polyprotein Glycine max
74.43/6.17
1
0.39
(K)YTSPPK(T)
13.42
Protein
metabolism
168024165
predicted protein Physcomitrella
74.43/6.17
1
1.18
14.86/9.19
5
32
(K)VLEDTSFR(V)
3.13
Unidentified
patens subsp patens
gi|1480014
putative delta subunit of ATP
synthase [Brassica rapa]
R.LVIDEIVK.S
97
Photosynthesis
K.RLVIDEIVK.S
and
K.ITDTQLAEVR.S
photorespiration
K.LEPPQLAQIAK.Q
K.TVLDPSLVAGFTIR.Y
27
gi|17473683
glycolate oxidase [Arabidopsis
19.06/6.74
2
21
thaliana]
R.IPVFLDGGVR.R
147
K.ALALGASGIFIGRPVVFSLA
Amino acid
metabolism
AEGEAGVR.
gi|167962794
peroxisomal glycolate oxidase
40.78/9.01
2
10
[Glycine max]
R.LPVFLDGGVR.
52
K.ALALGASGIFIGRPVVFSLA
Amino acid
metabolism
AEGEAGVR.N
28
gi|15235745
SHM1 (SERINE
57.36/8.13
11
25
R.ALEAFR.L
HYDROXYMETHYLTRANSFER
R.LDESTGYIDYDQMEK.S
ASE 1); glycine
K.SATLFRPK.L
hydroxymethyltransferase/ poly(U)
K.LIVAGASAYAR.
binding [Arabidopsis thaliana]
K.INQAVFPGLQGGPHNHTIT
GLAVALK.Q
K.AYQEQVLSNSAK.F
K.VLEAVHIASNK.
K.NTVPGDVSAMVPGGIR.M
237
Amino acid
metabolism
R.MGTPALTSR.G
K.AVTIALK.V
K.QFPTIGFEK.E
gi|163889372
serine-hydroxymethyltransferase
57.37/8.37
8
18
[Medicago truncatula]
R.ALEAFR.L
161
K.SATLFRPK.L
Amino acid
metabolism
K.LIVAGASAYAR.L
K.INQAVFPGLQGGPHNHTIT
GLAVALK.Q
K.NTVPGDVSAMVPGGIR.M
R.MGTPALTSR.G
K.LRHDVEEFAK.
K.QFPTIGFEK.S
gi|4336752
catalase [Brassica juncea]
57.38/6.75
4
7
R.APGVQTPVIVR.
52
Stress response
R.DEEVNYFPSR.Y
R.WIEALSDPR.I
29
30680844
structural constituent of ribosome
21.52/9.82
1
5.29
(K)QVVAKYSIGK(A)
12.50
Arabidopsis thaliana
77403721
168000491
ribulose 1 5 bisphosphate
Protein
metabolism
8.96/4.40
1
13.25
(R)DLAVEGNEIIR(E)
1.84
Photosynthesis
carboxylase oxygenase large subunit
and
Morus nigra
photorespiration
predicted protein Physcomitrella
98.82/6.78
1
0.89
57.36/8.13
11
22
(K)TSIKNYPK(Y)
-13.49
Unidentified
266
Amino acid
patens subsp patens
gi|15235745
SHM1 (SERINE
R.LDESTGYIDYDQMEK.S
HYDROXYMETHYLTRANSFER
K.SATLFRPK.
ASE 1); glycine
K.LIVAGASAYAR.
hydroxymethyltransferase/ poly(U)
K.VLEAVHIASNK.N
metabolism
binding [Arabidopsis thaliana]
K.NTVPGDVSAMVPGGIR.M
R.GFVEEDFAK.V
K.VAEYFDK.A
K.LKDFVSAMESSSTIQSEIAK
.L
K.DFVSAMESSSTIQSEIAK.L
K.LRHEVEEFAK.Q
K.QFPTIGFEK.E
gi|72256527
serine hydroxymethyltransferase
56.10/7.72
4
10
[Medicago truncatula]
R.LDESTGYIDYDQMEK.S
90
K.LIVAGASAYAR.L
Amino acid
metabolism
K.VLESVHIAANK.N
K.NTVPGDVSAMVPGGIR.M
gi|1345673
Catalase isozyme 1
57.03/6.97
5
11
R.GPILLEDYHLVEK.L
90
Stress response
R.APGVQTPVIVR.F
K.SLLEEDAIR.V
K.TWPEDILPLQPVGR.M
K.LASHLNVRPSI.-
30
106896808
cycloidea like protein group 1A
15.69/9.91
1
6.52
(K)QSLMSSPHK(Q)
-11.44
Others
44.94/8.12
1
2.72
(K)GCVEELMLRLK(K)
-24.11
Unidentified
57.38/6.75
8
16
R.GPILLEDYHLVEK.L
257
Lupinus bracteolaris
168049495
predicted protein Physcomitrella
patens subsp patens
gi|4336752
catalase [Brassica juncea]
R.APGVQTPVIVR.F
R.FSTVIHER.G
K.FPDMVHALKPNPK.S
K.SHIQENWR.V
Stress response
R.DEEVNYFPSR.Y
R.WIEALSDPR.I
R.SIWISYWSQADK.T
31
134142800
mitochondrial glycine
115.05/6.91
1
0.85
(R)FCDTLISIR(E)
13.58
decarboxylase complex P protein
Amino acid
metabolism
Populus tremuloides
gi|255542330
ATP binding protein, putative
68.33/9.34
1
1
K.RESLPITR.T
19
[Ricinus communis]
32
gi|15228194
SBPASE (SEDOHEPTULOSE-
Protein
metabolism
42.39/6.17
4
10
R.TTYVLAVK.G
110
C-compound and
BISPHOSPHATASE); phosphoric
R.ATFDNSEYSK.L
carbohydrate
ester hydrolase/ sedoheptulose-
K.GIFTNVTSPTAK.A
metabolism
bisphosphatase [Arabidopsis
R.FEETLYGTSR.L
thaliana]
33
1885326
phosphoribulokinase Pisum sativum
39.00/5.27
4
12.78
(R)LTSVFGGAAEPPK(G)
11.64
C-compound and
(K)ANDFDLMYEQVK(A)
carbohydrate
(K)LTCSYPGIK(F)Carbamidom
metabolism
ethyl C (3)
(K)FYGEVTQQMLK(H)
KPPR_ARA
Phosphoribulokinase chloroplast
44.44/5.63
4
10.63
(R)ANDFDLMYEQVK(A)
10.77
C-compound and
TH
precursor Phosphopentokinase
(K)LTCSYPGIK(F)Carbamidom
carbohydrate
PRKase PRK
ethyl C (3)
metabolism
(K)FYGEVTQQMLK(H)
(R)DLYEQLIANK(A)
144582611
predicted protein Ostreococcus
118.32/4.75
1
1.10
(R)SASADDVTLDSH(-)
48.47/7.70
5
11.79
(R)GLAYDTSDDQQDITR(G)
-6.91
Unidentified
lucimarinus CCE9901
34
30687999
RCA RUBISCO ACTIVASE
11.4115
Photosynthesis
Arabidopsis thaliana
(K)NFLTLPNIK(V)
and
(K)VPLILGIWGGK(G)
photorespiration
(K)SFQCELVMAK(M)
(R)VYDDEVR(K)
11994675
unnamed protein product
40.51/8.84
1
1.98
(R)QTITISR(I)
13.60
Unidentified
51.43/8.11
2
6.58
(K)VPLILGIWGGK(G)
13.60
Photosynthesis
Arabidopsis thaliana
71834884
Rubisco activase 2
Mesembryanthemum crystallinum
35
119720808
ribulose bisphosphate carboxylase
18.42/8.10
3
14.81
Brassica rapa
AF372874_1
F1O19 10 F1O19 10 Arabidopsis
(R)IPVIVTGNDFSTIYAPLIR(
and
D)
photorespiration
(K)EVDYLLR(N)
11.97
Photosynthesis
(K)TEYPNAFIR(I)
and
(R)IIGFDNNR(Q)
photorespiration
14.69/5.60
1
5.6
(K)EVDYLIR(N)
11.31
20.17/8.23
5
28
K.VWPPVGK.K
176
Unidentified
thaliana
gi|132091
Ribulose bisphosphate carboxylase
small chain F1, chloroplastic
Photosynthesis
K.KFETLSYLPDLTEVELGK.E
and
K.EVDYLLR.N
photorespiration
R.EHGSTPGYYDGR.Y
R.IIGFDNNR.Q
36
RCA_CUCS
Ribulose bisphosphate carboxylase
45.69/7.79
4
12.59
(K)NFLTLPNIK(V)
12.91
Photosynthesis
A
oxygenase activase chloroplast
(K)VPLILGVWGGK(G)
and
precursor RuBisCO
(K)SFQCELVFAK(M)
photorespiration
(R)VYDDEVR(K)
gi|266893
Ribulose bisphosphate
45.68/7.57
4
8
K.NFLTLPNIK.V
131
Photosynthesis
carboxylase/oxygenase activase,
K.VPLILGVWGGK.G
and
chloroplastic
K.FYWAPTR.E
photorespiration
R.VYDDEVR.K
37
159476666
heat shock protein 70B
71.91/5.13
1
1.33
(R)IPAVQEIVR(K)
0.62
Stress response
76.46/4.87
1
1.25
(R)IPAVQELVR(K)
0.57
Stress response
77.06/5.13
7
10
94
Stress response
113
Stress response
Chlamydomonas reinhardti
15233779
CPHSC70 1 chloroplast heat shock
protein 70 1 ATP binding
unfolded protein binding
Arabidopsis thaliana
gi|6746592
heat shock protein 70 [Arabidopsis
thaliana]
R.IAGLEVLR.I
R.IINEPTAASLAYGFER.K
K.KDEGIDLLK.D
K.DEGIDLLK.D
R.TPVENSLR.D
K.DIDEVILVGGSTR.I
100
R.IPAVQDLVR.K
K.QDITITGASTLPK.D
gi|92870233
Chaperone DnaK [Medicago
75.71/5.19
6
9
22.66/8.00
1
5.74
truncatula]
38
30681437
forkhead associated domain
(R)ITFGDTNLAIFR(V)
12.50
containing protein FHA domain
Protein
metabolism
containing protein Arabidopsis
thaliana
gi|468773
ribosomal protein L12 [Arabidopsis
19.69/5.51
1
7
K.IGSEISSLTLEEAR.I
83
thaliana]
39
gi|7525041
ribulose-1,5-bisphosphate
Protein
metabolism
52.92/5.88
4
8
R.ESTLGFVDLLR.D
121
Photosynthesis
carboxylase/oxygenase large subunit
R.DDYVEK.D
and
[Arabidopsis thaliana]
R.DLAVEGNEIIR.E
photorespiration
K.EITFNFPTIDK.L
40
42562402
acetyltransferase related
55.51/9.00
1
2.34
(R)FSLTLFAWLGK(I)
13.10
Arabidopsis thaliana
125593447
hypothetical protein OsJ 016989
Protein
metabolism
38.72/10.91
1
3.07
(-)MAATEAGGQRR(R)
13.09
Unidentified
(K)GPGLYTEIGK(K)
11.30
Unidentified
Oryza sativa japonica cultivar
group
147810375
hypothetical protein Vitis vinifera
18.55/7.97
1
5.71
gi|42601787
voltage-dependent anion-selective
29.33/8.73
4
14
channel protein [Brassica rapa]
41
157342126
unnamed protein product Vitis
K.GPGLYTEIGK.K
171
Cellular
R.DLLYK.D
communication
K.NTVVGAEVSHNLK.S
and signal
K.SFITISGEVDSK.A
transduction
34.02/4.73
1
5.14
(K)ILDEALAGDNVGILLR(G)
13.60
Unknown
46.67/5.60
1
2.12
(K)FEALVYVLK(K)
12.67
Protein synthesis
27.22/4.88
1
6.45
(K)ILDEALAGDNVGLLLR(G)
11.62
Protein synthesis
125.47/5.83
1
1.35
(K)GIPLNMLQLDWLASR(D)
7.84
Unidentified
-6.07
Protein
vinifera
218312
chloroplast elongation factor TuB
EF TuB Nicotiana sylvestris
2546952
translation elongation factor TU
Glycine max
147777433
hypothetical protein Vitis vinifera
Phosphoryl STY (14)
111145147
maturase K Nuytsia floribunda
53.38/10.18
1
2.44
(K)KNLYFQIISGR(L)
metabolism
gi|1022805
phosphoglycerate kinase
[Arabidopsis thaliana]
41.88/4.93
7
23
-.GDLTSADLK.G
R.ADLNVPLDDNQTITDDTR.I
K.FSLAPLVPR.L
K.LASLADLYVNDAFGTAHR.
A R.AHASTEGVTK.F
K.FAAGTEAIANK.L
K.GVTTIIGGGDSVAAVEK.V
158
Glycolysis and
gluconeogenesis
gi|6966930
glutamine synthetase [Brassica
47.49/6.37
6
16
napus]
R.VESLLNLDTKPFTDR.I
82
Photosynthesis
R.TLEKPVEDPSELPK.W
and
R.AAEIFSNK.K
photorespiration
R.DISDAHYK.A
K.AILNLSLR.H
K.HETASIDQFSWGVANR.G
gi|15238559
GS2 (GLUTAMINE
47.38/6.43
5
12
R.TIEKPVEDPSELPK.W
74
Photosynthesis
SYNTHETASE 2); glutamate-
K.AAEIFSNK.K
and
ammonia ligase [Arabidopsis
R.DISDAHYK.A
photorespiration
thaliana]
K.AILNLSLR.H
K.HETASIDQFSWGVANR.G
gi|226247005
3-phosphoglycerate kinase [Elymus
31.43/4.85
4
15
wawawaiensis]
-.FSLAPLVPR.L
67
R.LSELLGIEVK.K
Glycolysis and
gluconeogenesis
R.AHASTEGVTK.F
K.GVTTIIGGGDSVAAVEK.V
42
157342126
unnamed protein product Vitis
34.02/4.73
1
5.14
(K)ILDEALAGDNVGILLR(G)
13.60
Unidentified
43.62/7.89
2
5.79
(K)LQAGYLFPEIAR(R)
13.60
Unidentified
Unidentified
vinifera
10187153
unnamed protein product Fragaria x
ananassa
115464681
Os05g0497100 Oryza sativa
(R)EQLTQLVKFAK(D)
95.71/6.66
1
1.07
(R)FEMELAKAK(K)
-14.61
52.06/6.21
3
8
K.YDEIDAAPEER.A
139
japonica cultivar group
gi|2494261
Elongation factor Tu, chloroplastic
R.GITINTATVEYETENR.H
Protein
metabolism
K.ILDEALAGDNVGLLLR.G
gi|218310
chloroplast elongation factor TuA
49.70/6.09
3
7
K.YDEIDAAPEER.A
78
Protein
(EF-TuA) [Nicotiana sylvestris]
R.GITINTATVEYETENR.H
metabolism
K.FEAIVYVLK.K
gi|218312
chloroplast elongation factor TuB
46.67/5.70
3
8
(EF-TuB) [Nicotiana sylvestris]
K.YDEIDAAPEER.A
78
R.GITINTATVEYETENR.H
Protein
metabolism
K.FEALVYVLK.K
43
gi|1346967
Ribulose bisphosphate carboxylase
52.92/5.88
4
11
K.DTDILAAFR.V
134
Photosynthesis
large chain; Short=RuBisCO large
K.TFQGPPHGIQVER.D
and
subunit; Flags: Precursor
K.SQAETGEIK.G
photorespiration
R.LSGGDHVHAGTVVGK.L
K.EITFNFPTIDK.L
gi|30959094
ribulose-1,5-bisphosphate
49.37/6.22
4
12
K.DTDILAAFR.V
124
Photosynthesis
carboxylase/oxygenase large subunit
K.TFQGPPHGIQVER.D
and
[Sisymbrium irio]
K.SQAETGEIK.G
photorespiration
R.PNGLLLHIHR.A
R.LSGGDHVHAGTVVGK.L
44
116782171
unknown Picea sitchensis
35.18/5.87
1
2.48
(R)LFLTELSR(L) Phosphoryl
13.58
Unidentified
11.39
Photosynthesis
STY (7)
ATPA_POP
ATP synthase subunit alpha
EU
ATPase subunit alpha ATP
and
synthase F1 sector subunit alpha
photorespiration
ATX3_ARA
Histone lysine N methyltransferase
TH
ATX3 Trithorax homolog protein 3
10.61/10.42
102.74/7.65
1
1
13.2653
0.89
(R)IAQIPVSEAYLGR(V)
(K)KGEIIVYK(K) Phosphoryl
7.22
STY (7)
Protein
metabolism
TRX homolog protein 3 Protein
SET DOMAIN GROUP 14
168812226
putative ribulose 1 5 bisphosphate
16.38/8.58
1
4.83
(K)FYWAPTR(D)
0.32
Photosynthesis
gi|75336517
carboxylase oxygenase activase
and
alpha 2 Cupressus sempervirens
photorespiration
ATP synthase subunit beta,
53.68/5.21
5
15
chloroplastic
R.INPTTSDPAVSIR.E
126
Photosynthesis
R.IAQIIGPVLDVAFPPGK.M
and
R.IFNVLGEPVNNLGPVDTLT
photorespiration
TSPIHK.
K.VVDLLAPYR.R
R.FVQAGSEVSALLGR.M
45
gi|30678347
CA1 (CARBONIC ANHYDRASE
29.49/5.54
2
10
1); carbonate dehydratase/ zinc ion
K.YETNPALYGELAK.G
68
K.YGGVGAAIEYAVLHLK.V
carbohydrate
binding [Arabidopsis thaliana]
gi|62320917
carbonic anhydrase, chloroplast
C-compound and
metabolism
28.76/5.29
2
11
68
precursor [Arabidopsis thaliana]
C-compound and
carbohydrate
metabolism
46
47834697
AML1 Sorghum bicolor
89.18/6.14
1
0.73
(K)LSSPIR(I)
2.18
Protein
metabolism
47834695
AML6 Hordeum vulgare
99.71/6.42
1
0.65
1.98
Protein
metabolism
116061019
unnamed protein product
97.56/11.07
1
0.69
(R)LSSPLR(V)
2.08
Unidentified
65.08/6.41
1
1
K.VLVENIK.R
30
Unidentified
166.3/6.36
2
0
K.AHAVK.N
29
Protein
Ostreococcus tauri
gi|224123924
predicted protein [Populus
trichocarpa]
gi|26984133
DNA topoisomerase II [Nicotiana
tabacum]
47
gi|168013983
predicted protein [Physcomitrella
patens subsp. patens]
K.DPFIK.E
27.20/5.53
2
8
R.FFVGGNWK.C
K.VVIAYEPVWAIGTGK.V
metabolism
36
Unidentified
gi|553107
triosephosphate isomerase [Oryza
27.59/6.60
2
8
sativa]
gi|414550
cytosolic triose phosphate isomerase
K.FFVGGNWK.C
25
R.ESGSTMDVVAAQTK.A
27.14/5.24
2
7
K.FFVGGNWK.C
gluconeogenesis
24
K.NVSADVAATTR.I
48
gi|18413869
binding / catalytic/ coenzyme
27.09/6.19
3
13
binding [Arabidopsis thaliana]
gi|56554664
Chain A, X-Ray Structure Of Gene
27.04/6.19
3
13
32.63/8.99
4
14
R.TGQIVYK.K
Glycolysis and
Glycolysis and
gluconeogenesis
53
C-compound and
K.AEQYLADSGTPYTIIR.A
carbohydrate
K.DDELLQTDTK.T
metabolism
53
Stress response
195
Protein
Product From Arabidopsis Thaliana
At5g02240
49
gi|15226167
ribosomal protein S5 family protein
[Arabidopsis thaliana]
R.AIVVVGDK.Q
R.NIVQVPMTK.Y
metabolism
K.QLGSNNALNNAR.A
R.IVLEMAGVENALGK.Q
gi|75313851
30S ribosomal protein S5,
33.56/8.96
3
8
chloroplastic
R.AIVVVGDK.K
134
K.YLTFPHR.N
Protein
metabolism
K.QLGSNNALNNAR.A
gi|1050435
glyoxysomal malate dehydrogenase
36.77/6.40
2
7
[Brassica napus]
50
53749344
putative Serine threonine protein
K.LLGVTTLDVAR.A
49
R.ANTFVAEVLGLDPR.E
Glycolysis and
gluconeogenesis
96.22/5.88
1.2458
1
(R)YLVTVSGNDGK(R)
0.14
Stress response
42.77/5.60
4
9
K.VIITAPAK.G
140
Glycolysis and
phosphatase BSL1 Oryza sativa
japonica cultivar group
gi|336390
glyceraldehyde 3-phosphate
dehydrogenase B subunit
K.VLDEEFGIVK.G
[Arabidopsis thaliana]
K.AVSLVLPQLK.G
gluconeogenesis
K.GLTAEDVNEAFR.K
gi|87331025
glyceraldehyde-3-phosphate
48.60/6.11
2
3
dehydrogenase subunit B
K.VLITAPAK.G
54
K.VLDEEFGIVK.G
Glycolysis and
gluconeogenesis
[Chlorokybus atmophyticus]
51
34597332
enolase Brassica napus
47.35/5.70
4
12.16
(K)AGAVVSGIPLYK(H)
12.91
(K)HIANLAGNPK(I)
Glycolysis and
gluconeogenesis
(K)VNQIGSVTESIEAVK(M)
(R)IEEELGSEAVYAGANFR(K
)
RBL_HALR
Ribulose bisphosphate carboxylase
B
large chain RuBisCO large subunit
52.07/6.23
2
4.48
(R)DTTLGFVDLLR(D)
12.91
(R)VALEACVKAR(N)
Photosynthesis
and
Carbamidomethyl C
photorespiration
(6)
52
7240297
ribulose 1 5 bisphosphate
51.81/6.07
4
8.76
(K)LNYYTPEYETK(D)
13.60
Photosynthesis
carboxylase large subunit
(K)DTDILAAFR(V)
and
Koeberlinia spinosa
(R)FLFCAEALYK(A)
photorespiration
Carbamidomethyl C
(4)
(R)ESTLGFVDLLR(D)
157326087
ribulose 1 5 bisphosphate
50.68/6.02
4
8.91
(K)LNYYTPEYETK(D)
12.07
Photosynthesis
carboxylase oxygenase large subunit
(K)DTDILAAFR(V)
and
Brassica oleracea var botrytis
(R)FLFCAEAIYK(S)
photorespiration
Carbamidomethyl C
(4)
(R)ESTLGFVDLLR(D)
182410571
ribulose 1 5 bisphosphate
carboxylase oxygenase large subunit
54.12/6.03
3
6.16
(K)DTDILAAFR(V)
(R)FLFCAEAIYK(A)
11.41
Photosynthesis
and
Corallorhiza bulbosa
Carbamidomethyl C
photorespiration
(4)
(K)EITFDFDPVDK(L)
53
gi|186521400
ATP binding / hydrogen ion
59.59/6.13
5
11
R.LVLEVSHHLGQNVVR.T
178
Photosynthesis
transporting ATP synthase,
R.TIAMDGTEGLVR.G
and
rotational mechanism [Arabidopsis
R.IMNVLGEPIDER.
photorespiration
thaliana]
K.IGLFGGAGVGK.T
R.VGLTGLTVAEYFR.D
gi|1346967
Ribulose bisphosphate carboxylase
52.92/5.88
5
8
large chain
K.LNYYTPEYETK.D
91
Photosynthesis
K.DTDILAAFR.V
and
K.DTDILAAFR.V
photorespiration
R.DLAVEGNEIIR.E
K.EITFNFPTIDK.L
107
54
3790419
gi|134104
ribulose 1 5 bisphosphate
48.69/7.32
1
2.5
(R)DTTLGFVDLLR(V)
0.17
Photosynthesis
carboxylase large subunit Lathraea
and
clandestina
photorespiration
RuBisCO large subunit-binding
protein subunit beta, chloroplastic
62.43/6.56
13
26
K.LADLVGVTLGPK.G
266
Photosynthesis
R.EVELEDPVENIGAK.L
and
K.TNDLAGDGTTTSVVLAQG
photorespiration
FIAEGVK.V
K.VVAAGANPVLITR.G
R.GYVSPYFVTDSEK.M
K.LLLVDK.K
R.DLVGVLEDAIR.G
R.DLVGVLEDAIR.G
R.EEVGLSLDK.A
K.LSGGVAVIQVGAQTETELK
.E R.ALSYPLK.L
K.NAGVNGSVVSEK.V
K.YEDLMAAGIIDPTK.V
55
gi|15237225
HCF136 (High chlorophyll
44.08/6.79
12
33
R.GFLLGTR.Q
323
Photosynthesis
fluorescence 136) [Arabidopsis
R.QTLLETK.D
and
thaliana]
R.SIPSAEEEDFNYR.F
photorespiration
R.FNSISFK.G
K.AAIQETVSATLNR.T
R.TVSSGISGASYYTGTFSAV
NR.S R.ADGGLWLLVR.G
R.GGGLYLSK.G
R.GFGILDVGYR.S
R.SEEEAWAAGGSGILLR.T
K.AADNIAANLYAVK.F
K.GFVLGNDGVLLR.Y
gi|1169585
Fructose-1,6-bisphosphatase,
37.13/5.31
3
7
cytosolic
K.KLDVLSNDVFVK.
62
K.LDVLSNDVFVK.A
Glycolysis and
gluconeogenesis
R.TLLYGGIFLYPADK.
gi|5305145
fructose-1,6-bisphosphatase [Pisum
35.88/6.25
2
9
sativum]
56
186505986
MAT3 METHIONINE
K.LIGLAGETNIQGEEQK.K
52
R.TLLYGGIFLYPADK.K
42.47/5.72
1
3.85
(R)EIGFISADVGLDADK(C)
Glycolysis and
gluconeogenesis
11.81
ADENOSYLTRANSFERASE 3
Amino acid
metabolism
Arabidopsis thaliana
46325929
ribulose 1 5 bisphosphate
32.11/5.88
1
3.78
(R)ESTLGFVDLLR(D)
9.61
Photosynthesis
carboxylase oxygenase large subunit
and
Forchhammeria watsonii
photorespiration
gi|336390
glyceraldehyde 3-phosphate
42.77/5.60
4
13
K.DSPLEVVVLNDSGGVK.N
dehydrogenase B subunit
K.VLDEEFGIVK.G
[Arabidopsis thaliana]
R.AAALNIVPTSTGAAK.A
164
Glycolysis and
gluconeogenesis
K.GLTAEDVNEAFR.K
57
gi|15230324
PSBO-2/PSBO2 (PHOTOSYSTEM
35.00/5.92
8
19
R.GSSFLDPK.G
136
Photosynthesis
II SUBUNIT O-2); oxygen
K.FLVPSYR.G
and
evolving/ poly(U) binding
R.VPFLFTVK.Q
photorespiration
[Arabidopsis thaliana]
R.VPFLFTVK.Q
R.LTYDEIQSK.T
K.NAPPDFQNTK.L
K.EEDGIDYAAVTVQLPGGE
R.V
K.FKEEDGIDYAAVTVQLPG
GER.V
58
gi|7329685
transketolase-like protein
81.42/5.80
4
5
[Arabidopsis thaliana]
R.FLAIDAVEK.A
46
C-compound and
K.SIITGELPAGWEK.A
carbohydrate
K.TPSILALSR.Q
metabolism
R.VSIEAASTFGWGK.I
gi|77554870
retrotransposon protein, putative,
76.99/7.64
1
1
R.SPTKFLANK.T
28
unclassified [Oryza sativa (japonica
Protein
metabolism
cultivar-group)]
gi|4455274
spliceosome associated protein-like
80.64/5.51
1
0
K.RVDLLR.G
25
[Arabidopsis thaliana]
gi|42408171
2-nitropropane dioxygenase-related
Protein
metabolism
21.61/5.08
1
2
R.VRDLIR.R
25
Photosynthesis
protein-like [Oryza sativa Japonica
and
Group]
photorespiration
59
gi|1881479
gi|3790419
gi|8885622
ribulose-1,5-bisphosphate
51.61/6.13
1
2
R.CITLGFVDLLR.D
35
Photosynthesis
carboxylase, large subunit
and
[Mitchella repens]
photorespiration
ribulose-1,5-bisphosphate
48.69/7.35
1
2
R.DTTLGFVDLLR.V
35
Photosynthesis
carboxylase/oxygenase large subunit
and
[Lathraea clandestina]
photorespiration
N-glyceraldehyde-2-
31.71/5.14
2
7
phosphotransferase-like
R.LVFVTNNSTK.S
35
K.VYVIGEEGILK.E
Glycolysis and
gluconeogenesis
[Arabidopsis thaliana]
gi|186526990
PGLP1 (2-
36.45/7.52
2
6
35
PHOSPHOGLYCOLATE
Amino acid
metabolism
PHOSPHATASE 1);
phosphoglycolate phosphatase
[Arabidopsis thaliana]
gi|226491816
4-nitrophenylphosphatase [Zea
5.46/5.46
2
5
35
mays]
C-compound and
carbohydrate
metabolism
60
RCA_CUCS
Ribulose bisphosphate carboxylase
45.68/7.79
4
8.96
(K)NFLTLPNIK(V)
12.91
Photosynthesis
A
oxygenase activase chloroplast
(K)VPLILGVWGGK(G)
and
precursor RuBisCO activase RA
(K)SFQCELVFAK(M)
photorespiration
Carbamidomethyl C
(4)
(R)VYDDEVR(K)
11994675
unnamed protein product
40.51/8.84
1
1.98
(R)QTITISR(I)
13.31
Unidentified
Arabidopsis thaliana
RS3A1_AR
40S ribosomal protein S3a 1
29.83/10.17
1
1.91
(R)DIMVR(E)
10.99
ATH
168002277
Protein
metabolism
predicted protein Physcomitrella
30.66/9.98
1
2.26
(R)TLPNLK(L)
12.37
Unidentified
47.16/6.46
1
1.18
(K)DLMVR(V)
12.34
Unidentified
110.48/6.18
1
0.61
(R)YDDEVR(F)
11.03
C-compound and
patens subsp patens
168039777
predicted protein Physcomitrella
patens subsp patens
159474428
soluble starch synthase III
Chlamydomonas reinhardtii
carbohydrate
metabolism
gi|266893
Ribulose bisphosphate
carboxylase/oxygenase activase,
45.68/
5
9
7.57
chloroplastic
K.NFLTLPNIK.V
159
Photosynthesis
K.VPLILGVWGGK.G
and
R.EAADIIK.K K.FYWAPTR.E
photorespiration
R.VYDDEVR.K
61
18477662
ribulose 1 5 biphosphate
47.69/6.11
3
6.03
carboxylase Moraea verdickii
(K)DTDILAAFR(V)
-7.43
(R)AVYECLR(G)
Photosynthesis
and
Carbamidomethyl C
photorespiration
(5)
(R)FIFCAEAIYK(A)
Carbamidomethyl C
(4)
gi|37543480
ribulose-1,5-bisphosphate
51.58/5.88
4
7
K.DTDILAAFR.V
57
Photosynthesis
carboxylase/oxygenase large subunit
K.TFEGPPHGIQVER.D
and
[Purdiaea nutans]
R.DLAREGGEIIR.E
photorespiration
R.DLAREGAEIIR.E
62
gi|1346967
Ribulose bisphosphate carboxylase
large chain
52.92//5.88
9
19
K.LNYYTPEYETK.D
K.DTDILAAFR.V
213
Photosynthesis
and
K.ALAALR.L
photorespiration
K.TFQGPPHGIQVER.D
R.GGLDFTK.D
K.SQAETGEIK.G
R.LSGGDHVHAGTVVGK.L
R.ESTLGFVDLLR.D
K.EITFNFPTIDK.
gi|30959094
ribulose-1,5-bisphosphate
49.37/6.22
8
17
K.DTDILAAFR.V
174
Photosynthesis
carboxylase/oxygenase large subunit
K.ALAALR.L
and
[Sisymbrium irio]
K.TFQGPPHGIQVER.D
photorespiration
R.GGLDFTK.D
K.SQAETGEIK.G
R.PNGLLLHIHR.A
R.LSGGDHVHAGTVVGK.L
R.ESTLGFVDLLR.D
63
124112037
CF1 alpha subunit of ATP synthase
54.77/5.68
1
2.37
(R)LLESPAPGIISR(R)
11.919
Chlorokybus atmophyticus
Photosynthesis
and
photorespiration
157326087
ribulose 1 5 bisphosphate
50.68/6.02
2
4.78
carboxylase oxygenase large subunit
(K)LNYYTPEYETK(D)
11.78
(R)ESTLGFVDLLR(D)el
and
Brassica oleracea var botrytis
gi|7525018
ATP synthase CF1 alpha subunit
Photosynthesis
photorespiration
55.29/5.19
4
9
[Arabidopsis thaliana]
K.IAQIPVSEAYLGR.V
106
Photosynthesis
R.LIESPAPGIISR.R
and
R.EQHTLIIYDDLSK.Q
photorespiration
K.TLTAEAESFLK.E
gi|66276267
ATP synthase beta subunit [Coriaria
50.97/5.20
2
4
K.VVDLLAPYR.R
80
Photosynthesis
ruscifolia]
K.TVLIFELINNIAK.A
and
photorespiration
64
ATPA_MES
ATP synthase subunit alpha
V
ATPase subunit alpha ATP
54.13/6.30
2
4.95
(K)IAQIPIGESYIGR(V)
12.50
(R)LIESPAPGIISR(R)
and
synthase F1 sector subunit alpha
62861073
ribulose 1 5 bisphosphate
Photosynthesis
photorespiration
51.16/6.02
2
4.99
(R)FLFCAESIFK(S)
carboxylase oxygenase large subunit
12.25
Carbamidomethyl C
Euphorbia obesa
Photosynthesis
and
(4)
photorespiration
(K)WSPELAAACEVWK(E)
Carbamidomethyl C
(9)
gi|1346967
Ribulose bisphosphate carboxylase
52.92/5.88
4
7
large chain
K.LNYYTPEYETK.D
77
Photosynthesis
K.DTDILAAFR.V
and
R.GGLDFTK.D
photorespiration
K.EITFNFPTIDK.L
gi|1050487
ribulose-1,5-bisphosphate
53.37/6.12
4
8
carboxylase [Hamelia cuprea]
K.LNYYTPEYETK.D
67
Photosynthesis
K.DTDILAAFR.V
and
R.GGLDFTK.D
photorespiration
K.WSPELAAACWVWK.A
65
AF384106_1
ribulose 1 5 bisphosphate
49.42/5.92
2
4.93
carboxylase large subunit Nyssa
(K)DTDILAAFR(V)
-1.51
(K)WSPELAAACDIWK(D)
yunnanensis
Photosynthesis
and
Carbamidomethyl C
photorespiration
(9)
149774702
ribulose 1 5 bisphosphate
carboxylase oxygenase Huperzia
46.49/7.70
2
4.52
(K)DTDILAAFR(M)
(R)VALEACVKAR(N)
australiana
Carbamidomethyl C
(6)
6.9
Photosynthesis
and
photorespiration
gi|1346967
Ribulose bisphosphate carboxylase
52.92/5.88
5
10
large chain
K.DTDILAAFR.V
105
Photosynthesis
(K.ALAALR.L
and
R.ESTLGFVDLLR.D
photorespiration
R.DLAVEGNEIIR.E
K.EITFNFPTIDK.L
gi|7525041
ribulose-1,5-bisphosphate
52.92/5.88
5
10
K.DTDILAAFR.V
105
Photosynthesis
carboxylase/oxygenase large subunit
K.ALAALR.L
and
[Arabidopsis thaliana]
R.ESTLGFVDLLR.D
photorespiration
R.DLAVEGNEIIR.E
K.EITFNFPTIDK.L
66
18477662
ribulose 1 5 biphosphate
47.69/6.11
1
2.32
(R)FIFCAEAIYK(A)
carboxylase Moraea verdickii
4.66
Carbamidomethyl C
and
(4)
127519383
glutamate receptor Malus
104.96/7.90
1
2.54
hupehensis
(R)AIDAFFDQGGTLSFSNDSR
Photosynthesis
photorespiration
-34.16
LTQLR(G)
Cellular
communication
and signal
transduction
gi|6688796
Ribulose-1,5-bisphosphate
51.31/6.23
2
4
carboxylase/oxygenase [Mitrasacme
K.DTDILAAFR.V
32
R.VALEACRQAR.N
and
pilosa]
67
168062920
predicted protein Physcomitrella
Photosynthesis
photorespiration
114
170.77/6.11
1
0.64
(R)SISPAKVTDK(Q)
9.53
Unidentified
75.67/9.84
1
1.44
(K)AVSSPWSGRR(S)
12.50
Unidentified
30.40/9.46
4
14
patens subsp patens
68
15223059
unknown protein Arabidopsis
thaliana
gi|18412657
RRF (RIBOSOME RECYCLING
FACTOR, CHLOROPLAST
130
Protein
metabolism
PRECURSOR) [Arabidopsis
thaliana]
69
168001509
predicted protein Physcomitrella
33.63/8.38
1
7.48
patens subsp patens
gi|9843639
Rieske FeS protein [Arabidopsis
70
71
46325929
gi|1346967
PETC (PHOTOSYNTHETIC
24.33/8.80
3
16
72
154254831
AF372874_1
Unidentified
K.DALGNDVVAAEWLK.T
80
Photosynthesis
K.GDPTYLVVENDK.T
and
K.VLFVPWVETDFR.T
photorespiration
24.35/8.80
Photosynthesis
ELECTRON TRANSFER C)
and
[Arabidopsis thaliana]
photorespiration
ribulose 1 5 bisphosphate
32.11/5.88
1
3.78
(R)ESTLGFVDLLR(D)
9.59
Photosynthesis
carboxylase oxygenase large subunit
and
Forchhammeria watsonii
photorespiration
Ribulose bisphosphate carboxylase
52.92/5.88
3
6
large chain
gi|157326087
0.12
AEK(L)
thaliana]
gi|15236275
(R)LFVVLAVAIQLWTLIILFV
ribulose-1,5-bisphosphate
50.68/6.04
3
K.LNYYTPEYETK.D
86
Photosynthesis
R.ESTLGFVDLLR.D
and
R.DLAVEGNEIIR.E
photorespiration
7
Photosynthesis
carboxylase/oxygenase large subunit
and
[Brassica oleracea var. botrytis]
photorespiration
putative chloroplast ribulose 1 5
4.17/4.54
1
20.59
(K)EVDYLLR(M)
4.65
Photosynthesis
bisphosphate carboxylase oxygenase
and
small subunit Olea europaea
photorespiration
F1O19 10 F1O19 10 Arabidopsis
14.69/5.60
1
5.6
35.85/9.95
2
2
(K)EVDYLIR(N)
2.18
Unidentified
26
Unidentified
thaliana
gi|224167957
predicted protein [Populus
trichocarpa]
R.AAGPR.C
R.AGGPK.T
73
gi|131391
Oxygen-evolving enhancer protein
27.91/6.84
4
11
2, chloroplastic
gi|829289
23 kD subunit [Sinapis alba]
26.60/6.95
4
12
K.AATSFSVA.-
108
Photosynthesis
R.EVEYPGQVLR.Y
and
K.HQLITATVNGGK.L
photorespiration
K.HQLITATVNGGK.L
108
Photosynthesis
and
photorespiration
74
gi|75336517
ATP synthase subunit beta,
53.68/5.21
9
23
chloroplastic
K.IGLFGGAGVGK.T
223
Photosynthesis
K.VVDLLAPYR.R
and
K.MPNIYNALVVK.G
photorespiration
K.AHGGVSVFGGVGER.T
R.INPTTSDPAVSIR.E
R.FVQAGSEVSALLGR.M
R.VGLTALTMAEYFR.D
K.VALVYGQMNEPPGAR.M
R.IAQIIGPVLDVAFPPGK.M
gi|156530093
AtpB [Cneorum tricoccon]
51.72/5.12
8
18
K.IGLFGGAGVGK.T
188
Photosynthesis
K.VVDLLAPYR.R
and
K.MPNIYNALVVK.S
photorespiration
K.AHGGVSVFGGVGER.T
R.FVQAGSEVSALLGR.M
R.VGLTALTMAEYFR.D
R.RGLTALTMAEYFR.D
K.VALVYGQMNEPPGAR.M
75
gi|1022805
phosphoglycerate kinase
[Arabidopsis thaliana]
41.88/4.93
7
23
R.AAIPTIK.Y
-.GDLTSADLK.G
K.FSLAPLVPR.L
K.GVSLLLPTDVVVADK.F
K.GVTTIIGGGDSVAAVEK.V
161
Glycolysis and
gluconeogenesis
K.LASLADLYVNDAFGTAHR.
A
R.ADLNVPLDDNQTITDDTR.I
gi|6966930
glutamine synthetase [Brassica
47.49/6.37
9
18
napus]
R.AAEIFSNK.K
115
Photosynthesis
K.AILNLSLR.H
and
R.DISDAHYK.A
photorespiration
R.EDGGFEVIK.K
R.EDGGFEVIK.K
R.TLEKPVEDPSELPK.W
R.VESLLNLDTKPFTDR.I
R.VESLLNLDTKPFTDR.I
K.HETASIDQFSWGVANR.G
gi|21396683
3-phosphoglycerate kinase
31.32/4.88
4
17
[Hordeum vulgare subsp. vulgare]
-.FSLAPLVPR.L
102
R.LSELLGIEVK.K
Glycolysis and
gluconeogenesis
K.GVSLLLPSDVVIADK.F
K.GVTTIIGGGDSVAAVEK.V
76
gi|1169494
Elongation factor Tu, chloroplastic
52.48/6.33
3
8
K.YDEIDAAPEER.A
139
K.ILDEALAGDNVGLLLR.G
Protein
metabolism
R.GITINTATVEYETENR.H
gi|218312
chloroplast elongation factor TuB
46.67/5.70
3
8
(EF-TuB) [Nicotiana sylvestris]
K.FEAIVYVLK.K
78
K.YDEIDAAPEER.A
Protein
metabolism
R.GITINTATVEYETENR.H
gi|218310
chloroplast elongation factor TuA
49.70/6.09
3
7
(EF-TuA) [Nicotiana sylvestris]
K.FEAIVYVLK.K
78
K.YDEIDAAPEER.A
Protein
metabolism
R.GITINTATVEYETENR.H
77
gi|32746733
mRNA-binding protein precursor
44.22/6.51
3
6
[Nicotiana tabacum]
K.FELDDK.I
159
K.ADAGHVGVEK.Y
Protein
metabolism
K.QFLFISSAGIYK.S
gi|15229384
mRNA-binding protein, putative
43.90/8.54
7
14
K.FELDDK.I
151
Protein
[Arabidopsis thaliana]
R.FEEYVK.I
metabolism
K.TNLPEDLK.E
K.TVEIVHYDPK.A
K.TNLPEDLKER.F
K.QFLFISSAGIYK.S
K.DLDTVRPVVDWAK.S
78
gi|40716077
fructose-bisphosphate aldolase
38.30/6.48
2
6
[Pandanus amaryllifolius]
79
gi|15231850
gi|16226772
(S)-2-hydroxy-acid oxidase,
R.ALQQSTIK.K
R.ALQQSTIK.K
40.32/9.16
6
17
K.NFEGLDLGK.M
peroxisomal, putative / glycolate
K.AIALTVDTPR.L
oxidase, putative / short chain alpha-
R.IPVFLDGGVR.R
hydroxy acid oxidase, putative
R.FFQLYVYK.N
[Arabidopsis thaliana]
R.FTLPPNLTLK.N
AT3g14420/MOA2_2 [Arabidopsis
54
Glycolysis and
gluconeogenesis
63
Amino acid
metabolism
40.29/9.16
6
17
R.IAIQAGAAGIIVSNHGAR.Q
63
Unidentified
52.64/5.56
4
8
K.ASVGFK.A
69
Photosynthesis
thaliana]
80
gi|1292976
ribulose-1,5-bisphosphate
carboxylase/oxygenase large subunit
K.LNYYTPEYETK.D
and
K.DTDILAAFR.V
photorespiration
K.TFQGPPHGIQVER.D
gi|1088276
ribulose 1,5-bisphosphate
49.97/7.29
3
7
carboxylase [Globba curtisii]
81
gi|11133654
Malate dehydrogenase 2,
glyoxysomal
37.70/8.14
8
23
K.LNYYTPDYEDK.D
53
Photosynthesis
K.DTDILAAFR.V
and
K.TFQGPPHGIQVER.D
photorespiration
R.GFLGAK.Q
R.DDLFK.I
K.GVDFIR.K
K.LLGVTTLDVAR.A
K.AKEELAGSIQK.G
353
Glycolysis and
gluconeogenesis
R.IQNGGTEVVEAK.A
R.ANTFVAEVLGLDPR.E
K.VAILGAAGGIGQSLSLLMK
.M
82
gi|13430566
gi|30688330
putative alanine aminotransferase
53.32/6.91
4
10
R.GELYLR.A
[Arabidopsis thaliana]
R.KEVAEFIQR.R
GGT1 (ALANINE-2-
K.LLEATGISTVPGSGFGQK.E
53.27/6.49
4
10
100
metabolism
100
K.HYLSLTSGGLGAYSDSR.G
OXOGLUTARATE
Amino acid
Amino acid
metabolism
AMINOTRANSFERASE 1)
[Arabidopsis thaliana]
gi|168049239
predicted protein [Physcomitrella
52.63/7.56
3
8
patens subsp. patens]
R.GELYLR.A
67
Unidentified
52
Photosynthesis
R.LLEATGISTVPGSGFGQK.E
R.DGYPSDPENIFLTDGASK.G
83
gi|430947
PSI type III chlorophyll a/b-binding
29.09/8.61
1
4
R.WLAYGEIINGR.F
protein
and
photorespiration
84
gi|15221119
aminomethyltransferase, putative
44.42/8.55
3
10
[Arabidopsis thaliana]
R.VGFFSSGPPAR.S
83
K.IGEITSGGFSPNLK.K
Amino acid
metabolism
R.SLLALQGPLAAPVLQHLTK
.E
85
gi|18265379
ascorbate peroxidase [Brassica
27.66/5.58
3
10
oleracea]
R.QVFLK.Q
66
Stress response
63
Photosynthesis
K.EGLFQLPSDK.A
K.NYPAVSEEYQK.A
86
gi|47604682
RuBisCO large subunit [Yucca
australis]
49.67/6.23
5
8
R.GGLDFTK.D
K.DTDIIAAFR.V
and
K.DTDIIAAFR.V
photorespiration
R.FSFWAEAIYK.A
K.DDENVNSQIFMR.W
gi|28076800
ribulose-1,5-bisphosphate
49.68/5.99
4
5
R.GGLDFTK.D
60
Photosynthesis
carboxylase/oxygenase large subunit
K.DTDILAAFR.M
and
[Tellamia contorta]
K.DTDILAAFR.M
photorespiration
K.DTDILAAFR.M
87
gi|15235363
DREPP plasma membrane
24.57/4.99
1
5
K.VVETYEATSAEVK.A
54
Stress response
14.56/5.84
3
25
R.VEALNTI.-
107
Cellular
polypeptide family protein
[Arabidopsis thaliana]
88
gi|139387258
ATPase epsilon subunit [Capsella
bursa-pastoris]
R.QTIEANLALR.R
communication
R.LNNQWLTMALMGGFAR.I
and signal
transduction
89
gi|18420348
fructose-bisphosphate aldolase,
42.96/6.78
8
27
putative [Arabidopsis thaliana]
K.ANSLAQLGK.Y
384
R.TAAYYQQGAR.F
Glycolysis and
gluconeogenesis
R.AASSYADELVK.T
K.YTGEGESEEAK.E
R.ATPEQVAAYTLK.L
R.LDSIGLENTEANR.Q
R.TVVSIPNGPSALAVK.E
R.YAAISQDSGLVPIVEPEILL
DGEHDIDR.T
gi|169039
aldolase
37.75/5.47
3
10
-.SYADELVK.T
157
R.LDSIGLENTEANR.Q
Glycolysis and
gluconeogenesis
R.TVVSIPNGPSALAVK.E
gi|8272480
fructose 1,6-bisphosphate aldolase
41.90/9.01
3
8
precursor [Avena sativa]
K.ANSLAQLGK.Y
88
R.ATPEEVASYTLK.L
Glycolysis and
gluconeogenesis
R.LASIGLENTEANR.Q
90
125991529
ribulose bisphosphate carboxylase
large subunit Leucas capensis
49.26/6.61
3
6.7416
(K)LNYYTPEYETK(D)
(K)DTDILAAFR(V)
7.98
Photosynthesis
and
(R)FLFCAEAIYK(S)
photorespiration
Carbamidomethyl C
(4)
gi|46325921
ribulose-1,5-bisphosphate
38.33/6.68
5
10
K.DTDILAAFR.V
103
Photosynthesis
carboxylase/oxygenase large subunit
K.DTDILAAFR.V
and
[Forchhammeria pallida]
R.LSGGDHVHAGTVVGK.L
photorespiration
R.ESTLGFVDLLR.D
R.ENTLGFVDLLR.D
gi|157326087
ribulose-1,5-bisphosphate
50.68/6.04
7
14
K.LNYYTPEYETK.D
91
Photosynthesis
carboxylase/oxygenase large subunit
K.DTDILAAFR.V
and
[Brassica oleracea var. botrytis]
K.DTDILAAFR.V
photorespiration
K.SQAETGEIK.G
R.LSGGDHVHAGTVVGK.L
R.ESTLGFVDLLR.D
R.DLAVEGNEIIR.E
91
15230048
transferase family protein
50.19/5.77
1
1.33
47.83/5.85
5
10
(R)DRLDPK(L)
-1.85
Others
K.VPLILGIWGGK.G
124
Photosynthesis
Arabidopsis thaliana
gi|1778414
ribulose-1,5-bisphosphate
carboxylase/oxygenase activase
R.VPIIVTGNDFSTLYAPLIR.D
and
[Oryza sativa Japonica Group]
K.FYWAPTR.D
photorespiration
R.VYDDEVR.K
gi|3687652
rubisco activase precursor [Datisca
40.82/7.59
5
11
R.VYDDEVR.K
Photosynthesis
121
glomerata]
and
photorespiration
gi|266893
Ribulose bisphosphate
45.68/7.57
6
10
K.NFLTLPNIK.V
88
Photosynthesis
carboxylase/oxygenase activase,
K.NFLTLPNIK.V
and
chloroplastic
R.VPIIVTGNDFSTLYAPLIR.D
photorespiration
K.FYWAPTR.E
R.VYDDEVR.K
R.VYDDEVR.K
92
147804677
hypothetical protein Vitis vinifera
11.21/7.37
1
14
(K)LQSLLSRNQSSVPK(G)
1.28
Unidentified
Phosphoryl STY (6),
Phosphoryl STY (11)
gi|445628
RuBisCO activase
42.72/5.50
2
7
K.VPLILGIWGGK.G
64
R.VPIIVTGNDFSTLYAPLIR.D
Photosynthesis
and
photorespiration
gi|12643761
Glutamine synthetase, chloroplastic
47.32/6.16
4
10
R.VESLLNLDTKPFTDR.I
49
Photosynthesis
R.IIAEYIWIGGSGIDLR.S
and
R.AAEIFSNK.K
photorespiration
K.AILNLSLR.H
93
116054971
tRNA ISS Ostreococcus tauri
46.12/8.01
1
1.62
(-)MLASTAR(I)
Phosphoryl
0.12
STY (4)
gi|266893
Ribulose bisphosphate
45.68/7.57
3
8
carboxylase/oxygenase activase
94
gi|266893
Ribulose bisphosphate
45.68/7.57
5
11
K.VPLILGVWGGK.G
Protein
metabolism
59
Photosynthesis
R.VPIIVTGNDFSTLYAPLIR.D
and
K.FYWAPTR.E
photorespiration
K.NFLTLPNIK.V
152
Photosynthesis
carboxylase/oxygenase activase,
K.NFLTLPNIK.V
and
chloroplastic
K.VPLILGVWGGK.G
photorespiration
R.VPIIVTGNDFSTLYAPLIR.D
R.VYDDEVR.K
gi|1778414
ribulose-1,5-bisphosphate
47.82/5.85
3
9
K.GLAYDISDDQQDITR.G
119
Photosynthesis
carboxylase/oxygenase activase
R.VPIIVTGNDFSTLYAPLIR.D
and
[Oryza sativa Japonica Group]
R.VYDDEVR.K
photorespiration
95
gi|14334740
putative fructose bisphosphate
42.86/6.48
4
12
aldolase [Arabidopsis thaliana]
R.LASIGLENTEANR.Q
116
R.TAAYYQQGAR.F
Glycolysis and
gluconeogenesis
R.TVVSIPNGPSALAVK.E
R.ATPEQVASYTLK.L
gi|8272480
fructose 1,6-bisphosphate aldolase
41.90/9.01
2
6
precursor [Avena sativa]
96
gi|15221044
dihydrolipoamide dehydrogenase 1,
R.LASIGLENTEANR.Q
46
R.ATPEEVASYTLK.L
53.95/6.96
3
8
K.HIIVATGSDVK.S
mitochondrial / lipoamide
K.IVSSTGALSLSEVPK.K
dehydrogenase 1 (MTLPD1)
K.VPGVVYTHPEVASVGK.T
Glycolysis and
gluconeogenesis
62
Others
[Arabidopsis thaliana]
97
41469624
108712051
168062920
putative poly ADP ribose
26.53/5.91
1
4.55
(R)LALNLDPLPRR(A)
13.08
C-compound and
glycohydrolase Oryza sativa
carbohydrate
japonica cultivar group
metabolism
glycohydrolase family protein
5.67/4.66
1
2.16
11.6
C-compound and
expressed Oryza sativa japonica
carbohydrate
cultivar group
metabolism
predicted protein Physcomitrella
170.77/6.11
1
0.64
(R)SISPAKVTDK(Q)
12.91
Unidentified
35.00/4.65
1
3.70
(R)IQAEDLFEVKVK(I)
11.34
Unidentified
170.77/6.11
1
0.64
(R)SISPAKVTDK(Q)
12.91
Unidentified
21.43/10.04
1
4.21
(R)RTETSSSE(-)
0.02
Unidentified
51.18/6.99
1
2
patens subsp patens
134153042
unknown Brassica juncea var
tumida
98
168062920
predicted protein Physcomitrella
patens subsp patens
115433972
Os01g0101700 Oryza sativa
japonica cultivar group
gi|255084752
knox-like protein [Micromonas sp.
K.LPSSATKTLK.E
29
Protein
RCC299]
99
147798694
hypothetical protein Vitis vinifera
metabolism
87.19/8.40
1
13.60
(K)SSNAAK(V)
Phosphoryl
13.60
Unidentified
STY (1), Phosphoryl STY (2)
168062920
predicted protein Physcomitrella
170.77/6.11
1
0.64
(R)SISPAKVTDK(Q)
3.73
Unidentified
14.76/12.58
1
-8.77
(R)SGLTLK(L)
-8.77
Unidentified
patens subsp patens
33321011
unknown Sorghum bicolor
Phosphoryl
STY (4)
gi|62320917
carbonic anhydrase, chloroplast
28.167/5.29
2
11
precursor [Arabidopsis thaliana]
100
168062920
predicted protein Physcomitrella
K.YETNPALYGELAK.G
34
Stress response
R.EAVNVSLANLLTYPFVR.E
170.77/6.11
1
0.64
43.97/7.05
2
3
(R)SISPAKVTDK(Q)
12.91
Unidentified
patens subsp patens
gi|21594999
transaldolase ToTAL2 [Arabidopsis
thaliana]
101
145334919
ATLFNR1 LEAF FNR 1 poly U
K.RVEELFGK.I
34
K.IWPPPNV.-
29.67/5.81
1
4.58
(R)LVYTNDGGEIVK(G)
Glycolysis and
gluconeogenesis
11.52
binding Arabidopsis thaliana
Photosynthesis
and
photorespiration
gi|15223753
FNR2 (FERREDOXIN-NADP(+)-
41.14/8.51
1
3
R.EGQSVGVIADGIDK.N
33
Photosynthesis
OXIDOREDUCTASE 2); NADPH
and
dehydrogenase/ oxidoreductase/
photorespiration
poly(U) binding [Arabidopsis
thaliana]
gi|110225704
ribosomal protein S4 [Mesostigma
31.74/10.47
1
3
R.LDRVICQAR.F
21
viride]
102
6967045
rubisco activase Pinus halepensis
Protein
metabolism
25.09/8.62
1
6.64
(K)MCVLFINDLDAGAGR(M)
12.63
Photosynthesis
Carbamidomethyl C
and
(2)
103
gi|1346967
Full=Ribulose bisphosphate
52.92/5.88
6
12
K.LNYYTPEYETK.D
photorespiration
137
Photosynthesis
carboxylase large chain;
K.DTDILAAFR.V
and
Short=RuBisCO large subunit;
K.ALAALR.L
photorespiration
Flags: Precursor
K.TFQGPPHGIQVER.D
R.ESTLGFVDLLR.D
K.EITFNFPTIDK.L
gi|46325921
ribulose-1,5-bisphosphate
38.33/6.68
4
9
K.DTDILAAFR.V
82
Photosynthesis
carboxylase/oxygenase large subunit
K.TFQGPPHGIQVER.D
and
[Forchhammeria pallida]
R.ESTLGFVDLLR.D
photorespiration
R.ENTLGFVDLLR.D