Complete list of Chris Bowler’s published contributions to scientific research *Top 20 most significant 1. Hussain, K., Bowler, C., Roberts, L. M. and Lord, J. M. Expression of ricin B chain in Escherichia coli. FEBS Lett. 244: 383-387 (1989). 2. Bowler, C., Alliotte, T., De Loose, M., Van Montagu, M. and Inzé, D. The induction of manganese superoxide dismutase in response to stress in Nicotiana plumbaginifolia. EMBO J. 8: 31-38 (1989). 3. Bowler, C., Alliotte, T., Van Den Bulcke, M., Bauw, G., Vandekerckhove, J., Van Montagu, M. and Inzé, D. A plant manganese superoxide dismutase is efficiently imported and correctly processed by yeast mitochondria. Proc. Natl. Acad. Sci. USA 86: 3237-3241 (1989). 4. Bowler, C., Van Kaer, L., Van Camp, W., Van Montagu, M., Inzé, D. and Dhaese, P. Characterization of the Bacillus stearothermophilus manganese superoxide dismutase gene and its ability to complement copper/zinc superoxide dismutase deficiency in Saccharomyces cerevisiae. J. Bacteriol. 172: 1539-1546 (1990). 5. Van Camp, W., Bowler, C., Villarroel, R., Tsang, E. W. T., Van Montagu, M. and Inzé, D. Characterization of iron superoxide dismutase cDNAs from plants obtained by genetic complementation in Escherichia coli. Proc. Natl. Acad. Sci. USA 87: 9903-9907 (1990). 6. Bowler, C., Slooten, L., Tsang, E. W. T., Van Camp, W., Van Montagu, M. and Inzé, D. Oxidative stress in plants. In: Plant Molecular Biology 2 (NATO ASI Series) R. G. Herrmann and B. A. Larkins (Eds.). New York, Plenum Publishing Corp., 695-705 (1991). 7. Bowler, C., Slooten, L., Vandenbranden, S., De Rycke, R., Botterman, J., Sybesma, C., Van Montagu, M. and Inzé, D. Manganese superoxide dismutase can reduce cellular damage mediated by oxygen radicals in transgenic plants. EMBO J. 10: 1723-1732 (1991). 8. Tsang, E. W. T., Bowler, C., Hérouart, D., Villarroel, R., Van Camp, W., Genetello, C., Van Montagu, M. and Inzé, D. Differential regulation of superoxide dismutases in plants exposed to environmental stress. Plant Cell 3: 783-792 (1991). *9. Bowler, C., Van Montagu, M. and Inzé, D. Superoxide dismutase and stress tolerance. Annu. Rev. Plant Physiol. Plant Mol. Biol. 43: 83-116 (1992). 10. Neuhaus, G., Bowler, C., Kern, R. and Chua, N.-H. Calcium/calmodulin-dependent and independent phytochrome signal transduction pathways. Cell 73: 937-952 (1993). 11. Hérouart, D., Bowler, C., Willekens, H., Van Camp, W., Slooten, L., Van Montagu, M. and Inzé, D. Genetic engineering of oxidative stress resistance in higher plants. Phil. Trans. R. Soc. London B 342: 235-240 (1993). 12. McKersie, B. D., Chen, Y., de Beus, M., Bowley, S. R., Bowler, C., Inzé, D., D'Halluin, K.and Botterman, J. Superoxide dismutase enhances tolerance of freezing stress in transgenic alfalfa (Medicago sativa L.). Plant Physiol. 103: 1155-1163 (1993). 13. Bowler, C., Caplan, A., Inzé, D. and Van Montagu, M. Innovative approaches to crop improvement. In: New Frontiers in Rice Research, K. Muralidharan and E. A. Siddiq (Eds.). Hyderabad, Directorate of Rice Research,:192-197 (1993). 14. Neuhaus, G., Bowler, C. and Chua, N.-H. Elucidation of phytochrome signal-transduction mechanisms. In: Molecular Botany: Signals and the Environment D. J. Bowles, P. M. Gilmartin, J. P. Knox and C. G. Lunt (Eds.). London, Portland Press: 277-284 (1994). 1 15. Van Camp, W., Willekens, H., Bowler, C., Van Montagu, M., Inzé, D., ReupoldPopp, P., Sandermann, H. Jr. and Langebartels, C. Elevated levels of superoxide dismutase protect transgenic plants against ozone damage. Bio/technology 12: 165-168 (1994). 16. Bowler, C., Neuhaus, G., Yamagata, H. and Chua, N.-H. Cyclic GMP and calcium mediate phytochrome phototransduction. Cell 77: 73-81 (1994). 17. Bowler, C., Van Camp, W., Van Montagu, M. and Inzé, D. Superoxide dismutase in plants. CRC Crit. Rev. Plant Sci. 13: 199-218 (1994). 18. Bowler, C., Yamagata, H., Neuhaus, G. and Chua, N.-H. Phytochrome signal transduction pathways are regulated by reciprocal control mechanisms. Genes & Dev. 8: 2188-2202 (1994). 19. Bowler, C. and Chua, N.-H. Emerging themes of plant signal transduction. Plant Cell 6: 1529-1541 (1994). 20. Nakayama, M., Masuda, T., Sato, N., Yamagata, H., Bowler, C., Ohta, H., Shioi, Y. and Takamiya, K.-i. Cloning, subcellular localization and expression of CHL1, a subunit of magnesium-chelatase in soybean. Biochem. Biophys. Res. Comm. 215: 422-428 (1995). 21. Bowler, C., Neuhaus, G. and Chua, N.-H. Transduction of light signals in plants. In: Physical Stresses in Plants S. Grillo & A. Leone (Eds.). Berlin, Springer-Verlag, 201-210 (1996) 22. Bowler, C. The transduction of light signals by phytochrome. In: Signal Transduction in Plants P. Aducci (Ed.). Basel, Birkäuser-Verlag AG, 137-152 (1997). 23. Neuhaus, G., Bowler, C., Hiratsuka, K., Yamagata, H. and Chua, N.-H. Phytochrome-regulated repression of gene expression requires calcium and cyclic GMP. EMBO J. 16: 2554-2564 (1997). 24. Yamagata, H. and Bowler, C. Molecular cloning and characterization of a cDNA encoding Early Light-Inducible Protein from soybean (Glycine max L.). Biosci. Biotech. Biochem. 61: 2143-2144 (1997). 25. Mustilli, A. C. and Bowler, C. Tuning in to the signals controlling photoregulated gene expression in plants. EMBO J., 16: 5801-5806 (1997). 26. Bowler, C., Frohnmeyer, H., Schafer, E., Neuhaus, G. and Chua, N.-H. Phytochrome and UV signal transduction pathways. Acta Phys. Plant. 19: 475-483 (1997). 27. Frohnmeyer, H., Bowler, C. and Schafer, E. Evidence for some signal transduction elements involved in UV-light-dependent responses in parsley protoplasts. J. Exp. Bot. 48: 739-750 (1997). 28. Frohnmeyer, H., Bowler, C., Zhu, G.-K., Yamagata, H. and Chua, N.-H. Different roles for calcium and calmodulin in the light-regulated expression of chalcone synthase. Plant J. 13: 763-772 (1998). 29. Yamagata, H., Nakajima, A., Bowler, C. and Iwasaki, T. Molecular cloning and characterization of a cDNA encoding asparagine synthetase from soybean (Glycine max L.) cell cultures. Biosci. Biotech. Biochem. 62: 148-150 (1998). *30. Mustilli, A. C., Fenzi, F., Ciliento, R., Alfano, F. and Bowler, C. Phenotype of the tomato high pigment-2 mutant is caused by a mutation in the tomato homolog of DEETIOLATED1. Plant Cell, 11: 145-158 (1999). 31. Falciatore, A., Casotti, R., Leblanc, C., Abrescia, C. and Bowler, C. Transformation of nonselectable reporter genes in marine diatoms. Marine Biotech. 1: 239-251 (1999). 2 32. Leblanc, C., Falciatore, A. and Bowler, C. Semi-quantitative RT-PCR analysis of photoregulated gene expression in marine diatoms. Plant Mol. Biol. 40: 1031-1044 (1999). 33. Bowler, C. and Fluhr, R. The molecular basis of cross tolerance. Trends Plant. Sci. 5: 241-246 (2000). *34. Falciatore, A., Ribera D’Alcalà, M., Croot, P. and Bowler, C. Perception of environmental signals by a marine diatom. Science 288: 2363-2366 (2000). 35. Bowler, C. Flowering or wilting? Europe has to find a new way to continue basic research in plant science. EMBO Rep. 1, 7-9 (2000). 36. Bowler, C. Arabidopsis thaliana, l’erbaccia più importante del mondo. L’Informatore Agrario 2: 29-31 (2001). 37. Malakhov, M. and Bowler, C. Phytochrome and regulation of photosynthetic gene expression. In “Advances in Photosynthesis and Respiration. Vol 11: Regulation of Photosynthesis” B. Andersson and E.-M. Aro (Eds.) Kluwer Academic Publishers. 51-66 (2001). 38. Bowler, C. Passato, presente, e futuro del pomodoro San Marzano. L’Informatore Agrario 24 (2001). 39. Bowler, C. and Gilmartin, P. M. (Eds) Molecular Plant Biology, Volume 1 Practical Approach Series Oxford University Press (April 2002). 40. Bowler, C. and Gilmartin, P. M. (Eds) Molecular Plant Biology, Volume 2 Practical Approach Series Oxford University Press (April 2002). 41. Falciatore, A., Formiggini, F. and Bowler, C. Reporter genes and in vivo imaging. Molecular Plant Biology, A Practical Approach, Vol. 2 Oxford University Press 265-283 (April 2002). 42. Scala, S. and Bowler, C. Molecular insights into the novel aspects of diatom biology. Cell. Mol. Life Sci. 58: 1666-1673 (2001). 43. Zurzolo, C. and Bowler, C. Exploring bioinorganic pattern formation in diatoms. Plant Physiol. 127: 1339-1345 (2001). 44. Falciatore, A. and Bowler, C. Revealing the molecular secrets of marine diatoms. Annu. Rev. Plant Biol. 53: 109-130 (2002). 45. Scala, S., Carels, N., Falciatore, A., Chiusano, M. L. and Bowler, C. Genome properties of the diatom Phaeodactylum tricornutum. Plant Physiol. 129: 993-1002 (2002). 46. Navazio, L., Moscatiello, R., Bellincampi, D., Baldan, B., Meggio, F., Brini, M., Bowler, C. and Mariani, P. The role of calcium in oligogalacturonide-activated signalling in soybean cells. Planta 215: 596-605 (2002). *47. Benvenuto, G., Formiggini, F., Laflamme, P., Malakhov, M. and Bowler, C. The photomorphogenesis regulator DET1 binds the amino-terminal tail of histone H2B in a nucleosome context. Curr. Biol. 12:1529-1534 (2002). 48. Schäfer, E. and Bowler, C. Phytochrome-mediated photoperception and signal transduction in higher plants. EMBO Rep. 3: 1042-1048 (2002). 3 49. Liu, Y., Roof, S., Ye, Z., Barry, C., Van Tuinen, C., Vrebelov, J., Bowler, C. and Giovannoni, J. Manipulation of light signal transduction as a means of modifying fruit nutritional quality in tomato. Proc. Natl. Acad. Sci. USA 101: 9897-9902 (2004). 50. Bowler, C., Benvenuto, G., Laflamme, P., Molino, D., Probst, A., Tariq, M. and Paszkowski, J. Chromatin techniques for plant cells. Plant J. 39: 776-789 (2004). 51. Davuluri, G. R., Van Tuinen, A., Mustilli, A. C., Manfredonia, A., Newman, R., Burgess, D., Brummell, D., King, S., Palys, J., Uhlig, J., Pennings, H. and Bowler, C. Manipulation of DET1 expression in tomato results in photomorphogenic phenotypes caused by post-transcriptional gene silencing. Plant J. 40: 344-354 (2004). 52. Grandillo, S., Mustilli, A. C., Parisi, M., Morelli, G., Giordano, I. and Bowler, C. Tecniche avanzate per la valutazione qualitativa del pomodoro: il caso Campania. Agroindustria 3: 151-159 (2004). 53. Fritsch, O., Benvenuto, G., Bowler, C., Molinier, J. and Hohn, B. The INO80 protein controls homologous recombination in Arabidopsis thaliana. Mol. Cell 16: 479-485 (2004). *54. Armbrust, E.V., Berges, J.B., Bowler, C., Green, B.R., Martinez, D., Putnam, N.H., Zhou, S., Allen, A.E., Apt, K.E., Bechner, M., Brzezinski, M.A., Chaal, B.K., Chiovitti, A., Davis, A.K., Demarest, M.S., Detter, J.C., Glavina, T., Goodstein, D., Hadi, M.Z., Hellsten, U., Hildebrand, M., Jenkins, B.D., Jurka, J., Kapitonov, V.V., Kröger, N., Lau, V.V.Y., Lane, T.W., Larimer, F.W., Lippmeier, J.C., Lucas, S., Medina, M., Montsant, A., Obornik, M., Schnitzler-Parker, M., Palenik, B., Pazour, G.J., Richardson, P.M., Rynearson, T.A., Saito, M.A., Schwartz, D.C., Thamatrakoln, K., Valentin, K., Vardi, A., Wilkerson, F.P. and Rokhsar, D.S. The genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism. Science 304: 79-86 (2004). 55. Montsant, A., Maheswari, U., Bowler, C. and Lopez, P.J. Diatomics: toward diatom functional genomics. J. Nanosci. Nanotech. 5: 5-14 (2005). 56. Maheswari, U., Montsant,, A., Goll, J., Krishnasamy, S., Rajyashri, K.R., Morawala Patell, V. and Bowler, C. The Diatom EST Database. Nucl. Acids. Res. 33: D344-D347 (2005). 57. Montsant, A., Jabbari, K., Maheswari, U. and Bowler, C. Comparative genomics of the pennate diatom Phaeodactylum tricornutum. Plant Physiol. 137: 500-513 (2005). 58. Falciatore, A. and Bowler, C. The evolution and function of blue and red light photoreceptors. Curr. Topics Dev. Biol. 68: 13-63 (2005). 59. Lopez, P.J., Desclés, J., Allen, A.E. and Bowler, C. Prospects in diatom research. Curr. Op. Biotech. 16: 1-7 (2005). *60. Davuluri, G. R., Van Tuinen, A., Fraser, P.D., Manfredonia, A., Newman, R., Burgess, D., Brummell, D.A., King, S.R., Palys, J., Uhlig, J., Bramley, P.M., Pennings, H. and Bowler, C. Fruitspecific RNAi-mediated suppression of DET1 enhances carotenoid andflavonoid content in tomatoes. Nature Biotechnol. 23: 890-895 (2005). 61. Fankhauser, C. and Bowler, C. Biochemical and molecular analysis of signaling components. In Photomorphogenesis in Plants and Bacteria. 3rd Edition. E. Schafer and F. Nagy (Eds.). Springer Publishers, the Netherlands 379-406 (2006). 62. Davuluri, G. R. and Bowler, C. Commercial applications of photomorphogenesis research. In Photomorphogenesis in Plants and Bacteria. 3rd Edition. E. Schafer and F. Nagy (Eds.). Springer Publishers, the Netherlands 627-640 (2006). 4 *63. Vardi, A., Formiggini, F., Casotti, R., De Martino, A., Ribalet, F., Miralto, A. and Bowler, C. A stress surveillance system based on calcium and nitric oxide in marine diatoms. PloS Biol. 4: e60 (2006). 64. Allen, A.E., Vardi, A. and Bowler, C. An ecological and evolutionary context for integrated nitrogen metabolism and related signalling pathways in marine diatoms. Curr. Op. Plant Sci. 9: 264-273 (2006). 65. Van Tuinen, A., de Vos, C.H.R., Hall, R. D., van der Plas, L. H. W., Bowler, C. and Bino, R. J. Use of metabolomics for identification of tomato genotypes with enhanced nutritional value derived from natural light-hyperresponsive mutants. Plant Genetic Engineering, Vol. 7: Metabolic Engineering and Molecular Farming. P.K. Jaiwal (Ed.). Studium Press, LLC, Houston, Texas, USA. pp. 339-356 (2006). 66. Bernhardt, A., Lechner, E., Hano, P., Schade, V., Dieterle, M., Anders, M., Dubin, M. J., Benvenuto, G., Bowler, C., Genschick, P. and Hellmann, H. CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana. Plant J. 47: 591-603 (2006). 67. Derelle, E., Ferraz, C., Rombauts, S., Rouze, P., Worden, A. Z., Robbens, S., Partensky, F., Degroeve, S., Echeynie, S., Cooke, R., Saeys, Y., Wuyts, J., Jabbari, K., Bowler, C., Panaud, O., Piegu, B., Ball, S. G., Ral, J. P., Bouget, F. Y., Piganeau, G., De Baets, B., Picard, A., Delseny, M., Demaille, J., Van de Peer, Y. and Moreau, H. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc. Natl. Acad. Sci. USA 103: 11647-11652 (2006). 68. Oudot-Le Secq, M.-P., Grimwood, J., Shapiro, H., Armbrust, E. V., Bowler, C. and Green, B. V. Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: Comparison with other plastid genomes of the red lineage. Mol. Gen. Genom. 277: 427-439 (2007). 69. Palenik, B., Grimwood, J., Aerts, A., Rouze, P., Salamov, A., Putnam, N., Dupont, C., Jorgensen, R., Derelle, E., Rombauts, S., Zhou, K., Otillar, R., Merchant, S. S., Podell, S., Gaasterland, T., Napoli, C., Gendler, K., Manuell, A., Tai, V., Vallon, O., Piganeau, G., Jancek, S., Heijde, M., Jabbari, K., Bowler, C., Lohr, M., Robbens, S., Werner, G., Dubchak, I., Pazour, G. J., Ren, Q., Paulsen, I., Delwiche, C., Schmutz, J., Rokhsar, D., Van de Peer, Y., Moreau, H. and Grigoriev, I. V. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc. Natl. Acad. Sci. USA 104: 7705-7710 (2007). 70. Montsant, A., Allen, A. E., Coesel, S., De Martino, A., Falciatore, A., Heijde, M., Jabbari, K., Maheswari, U., Mangogna, M., Rayko, E., Siaut, M., Vardi, A., Apt, K. E., Berges, J. A., Chiovitti, A., Davis, A. K., Hadi, M. Z., Lane, T. W., Lippmeier, J. C., Martinez, D., Parker, M. S., Pazour, G. J., Saito, M. A., Thamatrakoln, K., Rokhsar, D. S., Armbrust, E. V. and Bowler, C. Identification and comparative genomic analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana. J. Phycol. 43: 585-603 (2007). *71. De Martino, A., Meichenin, A., Shi, J., Pan, K. and Bowler, C. Genetic and phenotypic characterisation of Phaeodactylum tricornutum (Bacillariophyceae) accessions. J. Phycol. 43: 9921009 (2007). 72. Siaut, M., Heijde, M., Mangogna, M., Montsant, A., Coesel, S., Allen, A., Manfredonia, A., Falciatore, A. and Bowler, C. Molecular toolbox for studying diatom biology in Phaeodactylum tricornutum. Gene 406: 23-35 (2007). 73. Jiroutová, K., Horák, A., Bowler, C. and Obornik, M. Tryptophan biosynthesis in stramenopiles: eukaryotic winners in the diatom complex chloroplast. J. Mol. Evol. 65: 496-511 (2007). 5 74. Merchant, S. S., Prochnik, S. E., Vallon, O., Harris, E. H., Karpowicz, S. J., Witman, G. B., Terry, A., Salamov, A., Fritz-Laylin, L. K., Maréchal-Drouard, L., Marshall, W. F., Qu, L. H., Nelson, D. R., Sanderfoot, A. A., Spalding, M. H., Kapitonov, V. V., Ren, Q., Ferris, P., Lindquist, E., Shapiro, H., Lucas, S. M., Grimwood, J., Schmutz, J., Cardol, P., Cerutti, H., Chanfreau, G., Chen, C. L., Cognat, V., Croft, M. T., Dent, R., Dutcher, S., Fernández, E., Fukuzawa, H., González-Ballester, D., González-Halphen, D., Hallmann, A., Hanikenne, M., Hippler, M., Inwood, W., Jabbari, K., Kalanon, M., Kuras, R., Lefebvre, P. A., Lemaire, S. D., Lobanov, A. V., Lohr, M., Manuell, A., Meier, I., Mets, L., Mittag, M., Mittelmeier, T., Moroney, J. V., Moseley, J., Napoli, C., Nedelcu, A. M., Niyogi, K., Novoselov, S. V., Paulsen, I. T., Pazour, G., Purton, S., Ral, J. P., Riaño-Pachón, D. M., Riekhof, W., Rymarquis, L., Schroda, M., Stern, D., Umen, J., Willows, R., Wilson, N., Zimmer, S. L., Allmer, J., Balk, J., Bisova, K., Chen, C. J., Elias, M., Gendler, K., Hauser, C., Lamb, M. R., Ledford, H., Long, J. C., Minagawa, J., Page, M. D., Pan, J., Pootakham, W., Roje, S., Rose, A., Stahlberg, E., Terauchi, A. M., Yang, P., Ball, S., Bowler, C., Dieckmann, C. L., Gladyshev, V. N., Green, P., Jorgensen, R., Mayfield, S., Mueller-Roeber, B., Rajamani, S., Sayre, R. T., Brokstein, P., Dubchak, I., Goodstein, D., Hornick, L., Huang, Y. W., Jhaveri, J., Luo, Y., Martínez, D., Ngau, W. C., Otillar, B., Poliakov, A., Porter, A., Szajkowski, L., Werner, G., Zhou, K., Grigoriev, I. V., Rokhsar, D. S. and Grossman, A. R. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318: 245-250 (2007). 75. Bowler, C. and Allen, A. E. The contribution of genomics to the understanding of algal evolution.In: Unravelling the Algae, Ed. J. Brodie & J. Lewis, p. 331-340. CRC Press (2007). 76. Kroth, P. G., Chiovitti, A., Gruber, A., Martin-Jezequel, V., Mock, T., Schnitzler Parker, M., Stanley, M. S., Kaplan, A., Caron, L., Weber, T., Maheswari, U., Armbrust, E. V. and Bowler, C. A model for carbohydrate metabolism in the diatom Phaeodactylum tricornutum deduced from whole genome analysis and comparative genomic analyses with Thalassiosira pseudonana and other photoautotrophs. PLoS ONE 3: e1426 (2008). 77. Dubin, M. J., Bowler, C. and Benvenuto, G. A modified Gateway cloning strategy for overexpressing tagged proteins in plants. Plant Methods 4: 3 (2008). 78. Vardi, A., Bidle, K. D., Kwityn, C., Hirsh, D. J., Thompson, S. M., Callow, J. A., Falkowski, P. and Bowler, C. A diatom gene regulating nitric-oxide signaling and susceptibility to diatom-derived aldehydes. Curr. Biol. 18: 895-899 (2008). *79. Allen, A. E., LaRoche, J., Maheswari, U., Lommer, M., Schauer, N., Lopez, P. J., Finazzi, G., Fernie, A. R. and Bowler, C. Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation. Proc. Natl. Acad. Sci. USA 105: 10438-10443 (2008). 80. Coesel, S., Obornik, M., Varela, J., Falciatore, A. and Bowler, C. Evolutionary origins and functions of the carotenoid biosynthetic pathway in marine diatoms. PLoS ONE 3: e2896 (2008). *81. Bowler, C., Allen, A. E., Badger, J. H., Grimwood, J., Jabbari, K., Kuo, A., Maheswari, U., Martens, C., Maumus, F., Otillar, R. P., Rayko, E., Salamov, A., Vandepoele, K., Beszteri, B., Gruber, A., Heijde, M., Katinka, M., Mock, T., Valentin, K., Vérret, F., Berges, J. A., Brownlee, C., Cadoret, J. P., Chiovitti, A., Choi, C. J., Coesel, S., De Martino, A., Detter, J. C., Durkin, C., Falciatore, A., Fournet, J., Haruta, M., Huysman, M., Jenkins, B. D., Jiroutova, K., Jorgensen, R. E., Joubert, Y., Kaplan, A., Kroeger, N., Kroth, P., La Roche, J., Lindquist, E., Lommer, M., MartinJézéquel, V., Lopez, P. J., Lucas, S., Mangogna, M., McGinnis, K., Medlin, L. K., Montsant, A., Oudot-Le Secq, M. P., Napoli, C., Obornik, M., Petit, J., Porcel, B. M., Poulsen N., Robison, M., Rychlewski, L., Rynearson, T. A., Schmutz, J., Parker, M. S., Shapiro, H., Siaut, M., Stanley, M., Sussman, M. R., Taylor,A., Vardi,A., von Dassow, P., Vyverman, W., Willis, A., Wyrwicz, L. S., Rokhsar, D. S., Weissenbach, J., Armbrust, E. V., Green, B. R., Van de Peer, Y., Grigoriev, I.V. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature, 456: 239-244 (2008). 6 82. Maheswari, U., Mock, T., Armbrust, E. V. and Bowler, C. Update of the Diatom EST Database: a new tool for digital transcriptomics. Nucl. Acids Res. 37: D1001-1005 (2009). 83. Bowler, C., Karl, D. M. and Colwell, R. R. Microbial oceanography in a sea of opportunity. Nature, 459: 180-184 (2009). 84. Usman, A., Brazard, J., Martin, M. M., Plaza, P., Heijde, M., Zabulon, G. and Bowler, C. Spectroscopic characterization of a (6-4) photolyase from the green alga Ostreococcus tauri. J. Photochem. Photobiol. B: Biol. 96: 38-48 (2009). 85. Heijde, M. and Bowler, C. Genomics of algae. In: Encyclopedia of Life Sciences (ELS). John Wiley & Sons, Ltd: Chichester, UK. (September 2009). 86. Saade, A. and Bowler, C. Molecular tools for discovering the secrets of diatoms. BioScience, 59: 757-765 (2009). 87. Coesel, S., Mangogna, M., Ishikawa, T., Heijde, M., Rogato, A., Finazzi, G., Todo, T., Bowler, C. and Falciatore, A. Diatom PtCPF1 is a novel cryptochrome/photolyase family member with DNA repair and transcription regulation activity. EMBO rep., 10: 655-661 (2009). 88. De Riso, V., Raniello, R., Maumus, F., Rogato, A., Bowler, C. and Falciatore, A. Gene silencing in the marine diatom Phaeodactylum tricornutum. Nucl. Acids Res., 37: e96 (2009). 89. De Martino, A., Amato, A. and Bowler, C. Mitosis in diatoms: rediscovering an old model for cell division. BioEssays, 31: 874-884 (2009). *90. Moustafa, A., Beszteri, B., Maier, U. G., Bowler, C., Valentin, K. and Bhattacharya, D. Genomic footprints of a cryptic plastid endosymbiosis in diatoms. Science, 324: 1724-1726 (2009). 91. Cominelli, E., Galbiati, M., Tonelli, C. and Bowler, C. Water, the invisible problem. EMBO rep., 10: 671-676 (2009). 92. Guidi-Rontani, C., Maheswari, U., Jabbari, K. and Bowler, C. 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