Genes that were included in the rabbit gene chip
GenBank ID
Gene Name
DQ529234
NM_001082135
AY005131
AB021298
EF472882
EF472883
EF472884
EF472885
EF472886
EF472887
EF397306
D82875
AB042195
AB021296
AB021297
J03462
B-cell CLL/lymphoma 2 protein (Bcl-2)
BCL2-like 1 (BCL2L1), nuclear gene encoding mitochondrial protein
Bcl-X
B-type Fas antigen
Caspase 1
Caspase 11
Caspase 14
Caspase 2
Caspase 7
Caspase 9
Caspase 10
Deoxyribonuclease I
DRAK1
Fas antigen
Fas antigen spliced variant
Fast skeletal muscle troponin C
Apoptosis
1.
2.
3.
4.
5.
6.
7.
8.
9.
10.
11.
12.
13.
14.
15.
16.
Blood coagulation cascade
17.
18.
19.
20.
21.
22.
L12139
U77477
AF003200
AF395821
S73493
AF080065
Alpha-1-antitrypsin
Factor VII
Factor X
Factor XI
Heparin cofactor II=plasma thrombin inhibitor
Prothrombin precursor
23.
24.
25.
26.
27.
M81396
AY138902
NM_001082291
NM_001101714
S61902
Thrombin
Thrombomodulin precursor
Tissue factor
Tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)
Tissue factor pathway inhibitor=Kunitz-type protease inhibitor
Cell adhesion
28.
29.
30.
31.
32.
33.
34.
35.
36.
37.
38.
39.
40.
41.
42.
43.
44.
45.
46.
47.
X62075
U82750
U82751
EF472915
NM_001082677
EF472878
S80206
M55442
S77513
AY195896
AF184591
M73781
DQ356265
U28945
S82979
U26535
D16544
U39446
AF454919
AY212510
Cell cycle control
Alpha-actinin
ADAM 6d
ADAM 6e
ADAM 10
ADAM 2
ADAM 9
Fibronectin
Fomesticus vitronectin
Integrin alpha 5
Integrin beta 1
Integrin beta3
Integrin beta 8 subunit
Kit ligand
Ksp-cadherin
Laminin beta 2 subunit
L-selectin precursor
Osteopontin
P-selectin
Thrombospondin 2-like protein
Vascular cell adhesion molecule (VCAM-1)
48.
49.
50.
51.
52.
53.
54.
55.
56.
57.
58.
59.
60.
61.
62.
U24656
AF012745
AF510726
AF041421
AF042497
AF412307
AF413111
D14906
D14905
AF495878
NM_001081999
NM_001082756
X90592
AB010995
U16821
Annexin I
Annexin VIII
Annexin XIIIb
Bone morphogenetic protein 2
Bone morphogenetic protein 4
Bone morphogenetic protein 5
Bone morphogenetic protein 7
Calmodulin-dependent protein kinase II-delta
Calmodulin-dependent protein kinase II-gamma 2
Caveolin
Cyclin-dependent kinase-like 2 (CDC2-related kinase)
p21-activated protein kinase I (PAKI)
p53 protein
p97 protein
Particle major protein p50
Cell signaling
63.
64.
65.
66.
67.
68.
AF089893
AF089895
AF274319
AF076969
NM_001082746
NM_001082655
69.
70.
71.
72.
73.
X75345
Z30163
AF247647
AF333177
AF333178
cAMP-dependent protein kinase subunit R1 alpha
cAMP-dependent protein kinase subunit R2 beta
cGMP-dependent protein kinase II (cGK-II)
cGMP-dependent protein kinase type 1 alpha
Heme-regulated eIF-2a kinase
Inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complexassociated protein (IKBKAP)
MAP kinase activated protein kinase 2
MAP kinase kinase 1
Osteonectin
Receptor tyrosine kinase ErbB1
Receptor tyrosine kinase ErbB2
74.
75.
76.
77.
78.
79.
80.
81.
AF333179
AF333180
AF136242
U42424
AB073102
AF323272
AF139639
DQ356266
Receptor tyrosine kinase ErbB3
Receptor tyrosine kinase ErbB4
Retinoic acid receptor RXR alpha
Rho-associated-ser/thr kinase
ryk mRNA for tyrosine kinase-related protein
Secreted frizzled-related protein 2
Serum and glucocorticoid-regulated protein kinase (Sgk)
Transmembrane tyrosine kinase receptor (c-kit)
Chemokines/Cytokines/Inflammation/ Immune response
82.
83.
84.
85.
86.
87.
88.
89.
90.
91.
92.
93.
94.
95.
96.
97.
98.
99.
NM_001082195
NM_001089311
NM_001089312
NM_001082207
M96942
D21835
D21832
AF169170
AF169176
AF068058
AF068057
L24445
EF112476
M28161
M57440
M57439
AF123437
M12845
CD14 molecule
CD1a molecule
CD1b molecule
CD28 molecule
Class II (HLA-DOB gene homologue)
Interleukin 1 beta
Interleukin 1 receptor antagonist
Interleukin 4 variant IL-4delta 2
Interleukin 6
Interleukin 10
Interleukin 2
Interleukin 8 receptor subtype B
Lefty
MHC class II RLA-DR-alpha
Monocyte chemoattractant protein-1 (MCP 1)
Neutrophil attractant/activation protein-1 (NAP 1)
Neutrophil-activating peptide 78 (ENA 78)
Tumor necrosis factor (TNF)
Growth factors and related molecules
100.
101.
102.
103.
104.
105.
106.
107.
108.
109.
110.
111.
112.
113.
114.
115.
116.
117.
118.
119.
120.
121.
122.
123.
124.
125.
126.
AB217855
AF333181
AH012916
AF474181
AF013269
L12034
AF184968
AF020291
U06470
U12310
NM_001082342
NM_001082636
AF333182
U75390
AF022961
AB010386
AF049241
AY553907
AY421758
U82163
AF487889
AY347260
AB020215
X04793
X04795
M19338
X04796
Connective tissue growth factor
Epidermal growth factor
Fibroblast growth factor 5 (FGF 5)
Fibroblast growth factor 8b (FGF 8)
Fibroblast growth factor 9
Fibroblast growth factor mRNA
Fibroblast growth factor receptor 2 (FGFR 2)
Fibromodulin
Galectin 3
Gro homolog
GRO protein (GRO)
Growth hormone receptor (GHR)
Heparin-binding epidermal growth factor
Insulin-like growth factor 1 precursor (IGF 1)
Insulin-like growth factor IB (IGF IB)
Interferon gamma
Keratinocyte growth factor (KGF)
Midkine
Neuregulin 1 alpha isoform
Oncogene rsc
Osteoglycin
Platelet derived growth factor D
Platelet-derived growth factor beta
Protein kinase C alpha
Protein kinase C beta
Protein kinase C delta
Protein kinase C gamma
127.
128.
129.
130.
131.
132.
133.
134.
135.
136.
137.
138.
139.
140.
U78768
M20014
AF243516
M86381
M25664
DQ013342
AF333183
AF000133
U66205
AY429466
AY196796
DQ221768
AF453570
AB017155
Protein kinase c zeta
Protein kinase C-n
Putative epidermal growth factor receptor
Serum and growth factor-inducible gene Ps4e
Synovial cell activator
Thrombopoietin receptor
Transforming growth factor alpha
Transforming growth factor beta 1
Transforming growth factor induced protein
Transforming growth factor-beta 2
Vascular endothelial growth factor (VEGF)
Vascular endothelial growth factor receptor 1
Vascular endothelial growth factor receptor 3
VEGF receptor-2/Flk-1
Metabolism/ Enzymes/Others
141.
142.
143.
144.
145.
146.
147.
148.
149.
150.
151.
152.
153.
J05041
L23202
M12046
AF541960
AF541961
D10883
NM_001082239
M91004
AF245469
AY421757
AF311974
X59931
AY159324
Angiotensin converting enzyme
Angiotensin-converting isozyme
Atrial natriuretic polypeptides
Calcineurin A alpha
Calcineurin A beta
Calcyclin-associated protein (CAP 50)
Creatine kinase, muscle (CKM)
Endothelial leukocyte adhesion molecule I
Endothelin B receptor
Endothelin converting enzyme
Endothelin receptor type A
Endothelin 1
FK506 binding protein 12.6
154.
155.
156.
157.
158.
159.
160.
161.
162.
163.
164.
165.
166.
NM_001082027
AF202899
AF339158
AF404277
Z49747
M64656
M64657
NM_001082118
NM_001082698
NM_001082303
Y00701
M17250
NM_001082240
H+,K+-ATPase alpha 2c subunit
Heat shock protein 47
Mannose-6-phosphate/insulin-like growth factor II receptor
Phosphatidic acid phosphatase type 2A
Phospholipase C
Phosphorylase kinase alpha subunit
Phosphorylase kinase beta subunit
Potassium voltage-gated channel, Shal-related subfamily, member 2 (KCND2)
Protein phosphatase 1A (formerly 2C), magnesium-dependent, alpha isoform
Protein phosphatase regulatory subunit (RG1)
Protein phosphatase-1 catalytic subunit
Tryptophan hydroxylase
UDP-glucuronosyltransferase
Oxidative stress/ Oxidoreducatases
167.
168.
169.
170.
171.
172.
173.
174.
175.
176.
177.
178.
179.
180.
Z97654
NM_001082282
M96556
X69799
AJ002388
Y15406
L12405
NM_001082681
NM_001082388
AF332576
L10912
AB008784
M19917
M36538
12-Lipoxygenase
15-Lipoxygenase
5-Lipoxygenase-activating protein
Alcohol dehydrogenase, class I
Alcohol dehydrogenase, isozyme 1
Alcohol dehydrogenase, class III
Copper/zinc-superoxide dismutase
Cyclooxygenase-1 (COX-1)
Cyclooxygenase-2 (COX-2)
Cytochrome P-4B1 isoform
Cytochrome P-450 2B-Bx
Cytochrome P450 2D/I
Cytochrome P-450 isozyme 6
Cytochrome P-450 LM4
181.
182.
183.
184.
185.
186.
187.
188.
189.
190.
191.
192.
193.
194.
195.
196.
197.
198.
199.
200.
Z67878
NM_001082285
NM_001082246
NM_001082784
NM_001082284
NM_001082245
AY340972
X13837
L23766
AY421756
S61699
AB016237
L28808
AJ012536
E01314
U91584
AY179960
U85094
AF200350
BR000301
Extracellular superoxide dismutase
Flavin containing monooxygenase 1 (FMO1)
Flavin containing monooxygenase 3 (FMO3)
Flavin containing monooxygenase 4 (FMO4)
Flavin containing monooxygenase 4 (FMO4)
Flavin containing monooxygenase 5 (FMO5)
Forkhead transcription factor L2 (FoxL2)
Glutathione peroxidase
Glutathione S-transferase
Heme oxygenase 1
Heme oxygenase 2
LOX-1 mRNA for lectin-like oxidized LDL receptor
Manganese superoxide dismutase
NADH-ubiquinone oxidoreductase chain 2
NADPH-cytochrome P450 reductase
Nitric oxide synthase, constitutive
Nitric oxide synthase, endothelial (NOS3)
Nitric oxide synthase, inducible (NOS2)
Nitric oxide synthase, neuronal (NOS1)
NOX5 mRNA for predicted NADPH oxidase 5
Proteases and their inhibitors
201.
202.
203.
204.
205.
206.
207.
M13364
M13363
NM_001082059
AF148956
NM_001082264
M16476
EF472888
Calcium-dependent protease
Calcium-dependent protease large subunit mu-type
Calpain 3, p94
Calpain L, p82
Calpain, small subunit 1
Calpastatin
Cathepsin B
208.
209.
210.
211.
212.
213.
214.
215.
216.
217.
218.
219.
EF472890
AF458078
AF506008
AF346415
U46069
EF472908
L08418
AF020710
AF074325
AF097708
AY029518
AY453856
Cathepsin D
Cathepsin L
Cysteine protease CPP32
Eppin
Fertilin alpha subunit
Plasminogen activator inhibitor 2
Procathepsin E
Protein inhibitor of neuronal nitric oxide synthase (PIN)
Putative plasminogen activator inhibitor-1
Serine protease (HTRA)
Tissue-type plasminogen activator
Urokinase plasminogen activator (uPA)
Receptors
220.
221.
222.
223.
224.
225.
226.
227.
228.
L01700
AF145438
AF451328
NM_001082683
D49842
NM_001082208
M58021
AY275542
AF182217
Adenosine receptor A1
Adenosine receptor A3
Angiotensin receptor 2
CD38 molecule
CD86
CD86 molecule
IL-8 receptor
Metabotropic glutamate receptor 6
Pregnane x receptor (NR1I2)
Structural molecules
229.
230.
231.
232.
S83371
D49399
D83228
L01477
Collagen, pro alpha 1 type III
Collagen, type I alpha 2
Collagen, type II
Collagen, type IV
233.
234.
235.
236.
237.
238.
239.
240.
241.
242.
243.
244.
245.
246.
247.
L47283
AF451331
J05042
AF247705
S78179
M17820
F059201
AF056312
AF170528
AF170529
AB004812
U32574
M21983
M76233
X64696
Collagen, type IV alpha 3
Collagen, type V alpha 1
Collagen, type VIII alpha-1
Collagen, type X alpha 1
Collagen, type XII
Collagenase-1 precursor (MMP-1)
Collagenase-3 precursor
Coronin
Glycoprotein IIb (GPIIb)
Glycoprotein IIIa (GPIIIa)
Large aggregating cartilage
proteoglycan core protein
Myosin heavy chain (MHC)
Myosin light chain 2
Smooth muscle myosin light chain kinase
Titin
Transcription factors
248.
249.
250.
251.
252.
253.
254.
255.
256.
257.
258.
259.
AJ291306
AJ291307
AJ291320
AF035178
U09823
X74728
U47663
X68142
AF404275
AF404276
AY273790
AJ291311
c-jun transcription factor (c-jun gene)
c-myc transcription factor (c-myc gene)
Early growth response 1 zinc-finger transcription factor (egr-1 gene)
Elongation factor 1 A2 (EEF1A-2)
Elongation factor 1 alpha (Rabefla2)
Elongation factor 1 beta
Elongation factor 1 delta (Rabef1D)
Elongation factor 1 gamma
Endothelial differentiation gene 1
Endothelial differentiation gene 7
Hypoxia inducible factor 1 alpha
Nuclear factor of activated T-cells (nfatx gene)
260.
261.
262.
263.
AY166781
U66564
AF003894
AF003895
Peroxisome proliferator-activated receptor gamma 3 (PPAR gamma 3)
RUSH-1 alpha
Upstream stimulatory factor 1a
Upstream stimulatory factor 1b
Transporter/Carrier molecules
264.
265.
266.
267.
268.
269.
270.
271.
272.
273.
274.
275.
276.
277.
AF407578
NM_001082389
X06659
U10695
U39356
L42979
M36603
AF118852
AY339876
AF372520
NM_001082260
NM_001082063
X68071
U18344
Acyl CoA binding protein
Alpha-hemoglobin
Apolipoprotein A-I
Apolipoprotein B mRNA editing protein
Apolipoprotein C-IV
Apolipoprotein D (apoD)
Apolipoprotein E
Apolipoprotein J/clusterin
Glucose transporter type 4 (GLUT4)
Haptoglobin
Hemoglobin, beta
Hyperpolarization-activated cyclic nucleotide-gated channel 1
Ras-related protein (Rab2)
Serum albumin precursor
Vascular remodeling
278.
279.
S76584
J04712
280.
281.
282.
283.
EF472901
EF472902
AB006779
D63579
Decorin=proteoglycan
Hyperoxia induced (HI) 1 gene encoding a tissue inhibitor of
metal proteinases (TIMP)
Matrix metalloproteinase 10
Matrix metalloproteinase 11
Matrix metalloproteinase 12
Matrix metalloproteinase 2
284.
285.
286.
287.
288.
289.
290.
291.
292.
293.
294.
D26514
U73940
U83918
EF472903
EF472904
EF472905
EF472906
R86534
AF069713
AF069714
AF069715
Matrix metalloproteinase 9
Membane-type 1 metalloproteinase precursor (MMP 14)
Membrane-type 1 metalloproteinase
Membrane-type 2 matrix metalloproteinase
Membrane-type 3 matrix metalloproteinase
Membrane-type 4 matrix metalloproteinase
Membrane-type 5 matrix metalloproteinase
Metallo-elastase
Tissue inhibitor of metalloproteinase-2 (TIMP 2)
Tissue inhibitor of metalloproteinase-3 (TIMP 3)
Tissue inhibitor of metalloproteinase-4 (TIMP 4)