Table S1. Genes present in a ~40kb region of the strain CT6 genome, that are expressed in the presence of phenazines, and their close homologs in
other phenazine degraders.
CT6 gene
XA26_16550
XA26_16560
XA26_16570
XA26_16580
XA26_16590
XA26_16600
XA26_16610
XA26_16620
XA26_16630
XA26_16640
XA26_16650
XA26_16660
XA26_16670
XA26_16680
XA26_16690
XA26_16700
XA26_16710
XA26_16720
XA26_16730
XA26_16740
XA26_16750
XA26_16760
XA26_16770
XA26_16780
XA26_16790
XA26_16800
XA26_16810
XA26_16820
XA26_16830
XA26_16840
XA26_16850
XA26_16860
XA26_16870
XA26_16880
XA26_16890
XA26_16900
XA26_16910
XA26_16920
XA26_16930
XA26_16940
XA26_16950
XA26_16960
XA26_16970
XA26_16980
XA26_16990
RAST annotation
hypothetical protein
Transcriptional regulator, GntR family
hypothetical protein
hypothetical protein
hypothetical protein
1H-3-hydroxy-4-oxoquinaldine 2,4dioxygenase
Salicylate hydroxylase
hypothetical protein
Transcriptional regulator, TetR family
4-hydroxyphenylacetate 3monooxygenase
UbiD family decarboxylase
hypothetical protein
Hydroxyaromatic non-oxidative
decarboxylase
transcriptional regulator, LysR family
hypothetical protein
Dihydrodiol dehydrogenase
hypothetical protein
Aromatic-ring-hydroxylating
dioxygenase, beta
Ortho-halobenzoate 1,2-dioxygenase
alpha
hypothetical protein
Carbon-nitrogen hydrolase
hypothetical protein
2-keto-4-pentenoate hydratase
Transcriptional regulator, IclR family
4-oxalocrotonate decarboxylase
2-hydroxymuconic semialdehyde
hydrolase
Pyrrolidone-carboxylate peptidase
hydrolase
2,3-dihydroxybiphenyl 1,2dioxygenase
Ferredoxin reductase
3-phenylpropionate dioxygenase
ferredoxin
Large subunit naph/bph dioxygenase
3-phenylpropionate dioxygenase beta
subunit
Pigment protein
2,3-dihydroxybiphenyl 1,2dioxygenase
NADPH-dependent FMN reductase
family
Triacylglycerol lipase precursor
4-oxalocrotonate decarboxylase
Acetaldehyde dehydrogenase,
acetylating
4-hydroxy-2-oxovalerate aldolase
4-oxalocrotonate decarboxylase
Amidase
hypothetical protein
probable oxidoreductase
hypothetical protein
M. fortuitum ATCC6841
Rhodococcus JVH1
gene
%
gene designation
%
designation
identity
(GI)
identity
MFORT_26789
61
MFORT_11821
41
497117043
46
MFORT_02809
42
396926338
38
MFORT_12486
40
MFORT_16199
98
-
Sphingomonas DP58
%
gene designation
identity
MSEDRAFT_03850
34
MSEDRAFT_05222
50
MSEDRAFT_05007
37
-
MFORT_16204
MFORT_16209
MFORT_16214
MFORT_16219
100
99
99
99
497117731
760099504
760097826
28
38
37
MSEDRAFT_00241
MSEDRAFT_05232
MSEDRAFT_02403
-
32
33
35
-
MFORT_16224
MFORT_16229
MFORT_16234
100
99
98
396930211
497121725
497121727
32
88
58
MSEDRAFT_04481
-
38
-
MFORT_16239
MFORT_16244
MFORT_16249
MFORT_16254
MFORT_16259
100
99
99
99
99
497121731
497121733
497121737
497121738
82
65
81
82
MSEDRAFT_04478
MSEDRAFT_05374
MSEDRAFT_04816
-
50
36
36
-
MFORT_16264
100
497121740
75
MSEDRAFT_04466
38
MFORT_16269
MFORT_16274
MFORT_16279
MFORT_16284
MFORT_16289
MFORT_16294
MFORT_16299
99
99
99
99
99
100
99
497121742
497121744
497121746
497121748
497121750
497121752
497121754
79
60
74
76
76
71
55
MSEDRAFT_05237
MSEDRAFT_04487
-
41
56
-
MFORT_16304
MFORT_16309
MFORT_16314
99
99
99
497121756
497121759
497121761
79
67
73
MSEDRAFT_04832
MSEDRAFT_02527
MSEDRAFT_04465
58
51
54
MFORT_16319
MFORT_16324
95
99
497121763
497121765
82
73
MSEDRAFT_04471
MSEDRAFT_04475
52
42
MFORT_16329
MFORT_16334
100
100
497121767
497121769
73
89
MSEDRAFT_04470
MSEDRAFT_04467
46
73
MFORT_16339
MFORT_16344
99
99
497121771
497121773
78
81
MSEDRAFT_04466
MSEDRAFT_00594
62
33
MFORT_16349
99
497121775
80
MSEDRAFT_04486
62
MFORT_30584
MFORT_30589
MFORT_30594
99
100
99
760099215
497117493
79
61
MSEDRAFT_01857
MSEDRAFT_04831
28
47
MFORT_15879
MFORT_30519
MFORT_30524
MFORT_30529
MFORT_14347
MFORT_14352
67
99
100
99
99
99
396929555
396929556
497115832
497116141
497109126
-
67
61
71
32
27
-
MSEDRAFT_04521
MSEDRAFT_00745
MSEDRAFT_05146
MSEDRAFT_04185
-
56
43
34
27
-