1 TITLE 2 A compilation of quantitative functional traits for marine and freshwater crustacean zooplankton. 3 AUTHORS 4 Marie-Pier Hébert1‡*, Beatrix E. Beisner2*, and Roxane Maranger1* 5 1 6 Montréal, QC, H3C 3J7, Canada 7 2 8 ville, Montréal, QC, H3C 3P8, Canada 9 *Groupe de Recherche Interuniversitaire en Limnologie et en Environnement Aquatique (GRIL) 10 ‡ Département des Sciences Biologiques, Université de Montréal, C.P. 6128, Succ. Centre-ville, Department of Biological Sciences, University of Quebec at Montreal, C .P. 8888, Succ. Centre- [email protected] 11 12 ABSTRACT 13 This data compilation synthesizes 8609 individual observations and ranges of 13 traits from 201 14 freshwater and 191 marine crustacean taxa belonging to either Copepoda or Cladocera, two 15 important zooplankton groups across all major aquatic habitats. Most data were gathered from 16 the literature, with the balance being provided by zooplankton ecologists. With the aim of more 17 fully assessing zooplankton effects on elemental processes such as nitrogen (N), phosphorus (P) 18 and carbon (C) stocks and fluxes in aquatic ecosystems, this data set provides information on the 19 following traits: body size (length and mass), trophic group, elemental and biochemical corporal 20 composition (N, P, C, lipid and protein content), respiration rates, N- and P-excretion rates, as 1 21 well as stoichiometric ratios. Although relationships for zooplankton metabolism as a function of 22 body mass or requirements have been explored in the past three decades, data have not been 23 systematically compiled nor examined from an integrative and large-scale perspective across 24 crustacean taxa and habitat types. While this contribution likely represents the most 25 comprehensive such assembly of traits for both marine and freshwater species, this data set is not 26 exhaustive either. As a result, this compilation also identifies knowledge gaps; a fact that should 27 encourage researchers to disclose information they may have to help complete such databases. 28 This trait matrix is made available for the first time in this data paper; prior to its release, the data 29 set has been analyzed in a meta-analysis published as a companion paper (Hébert et al. in press). 30 These data should prove extremely valuable for aquatic ecologists for trait-based characterization 31 of plankton community structure as well as biogeochemical modeling. These data are also well- 32 suited for deriving shortcut relationships that predict more difficult to measure trait values, most 33 of which can be directly related to ecosystem properties (i.e., effect traits), from simpler traits 34 (e.g., body size), and for exploring patterns of trait variation within and amongst taxonomic units 35 or ecosystem types. Overall, this data set is likely to provide new insights into the functional 36 structure of zooplankton communities and increase our mechanistic understanding of the 37 influence of these pivotal organisms on aquatic ecosystems. 38 39 INTRODUCTION 40 Over the past three decades, the importance of individuals in regulating ecosystem processes, 41 such as consumer-driven nutrient cycling, has been increasingly recognized. In aquatic 42 environments, zooplankton represent a central and key component of food webs, exerting a 2 43 strong influence on other trophic groups and energy fluxes or material. Several species’ 44 characteristics have been pointed out as being good indicators, or predictors, of the effect of 45 zooplankton on their environment, including individual body size, corporal stoichiometry, and 46 specific physiological rates (Peters 1983, Ikeda 1985, Ikeda et al. 2001, Sterner and Elser 2002); 47 most of such descriptors can also be termed “functional traits”. While the use of traits has 48 recently gained popularity amongst aquatic community ecologists (e.g., for zooplankton, Barnett 49 et al. 2007, Barnett and Beisner 2007, Merico et al. 2009, Kiørboe 2011, Litchman et al. 2013, 50 Barton et al. 2013), few have concretely applied this approach to mechanistically link 51 zooplankton community structure to ecosystem functioning (e.g., extrapolate relative effects of 52 species traits on ecosystem processes). One obstacle toward developing a fully quantitative trait- 53 based assessment of community structure is that many traits require much effort or investment to 54 measure, especially for physiological traits such as respiration or excretion. An alternative 55 approach to direct trait measurement consists of using published taxon-specific trait values from 56 the literature (e.g., Barnett et al. 2007), but much of this trait information is dispersed in different 57 journals and/or is published in literature that is less accessible (e.g., older journal volumes, 58 undigitized books, institutional reports, Ph.D. theses, etc.). 59 Here, we provide a compilation of (mostly) quantitative trait data for crustacean zooplankton 60 species from both marine and freshwater habitats, gathering 8609 empirical observations on 392 61 different taxa (including 341 copepod and cladoceran species) in a single database. We mostly 62 focus on species-level trait values, contributing either directly or indirectly to elemental 63 processes, i.e., N, P, and C cycling. Including trait information on species from both freshwater 64 and marine ecosystems, this data set is of equal interest to limnologists and oceanographers. The 65 wide scope of our trait matrix allows for the quantification of large-scale trait patterns among 3 66 diverse taxa and between habitat types. For instance, in the companion meta-analysis (Hébert et 67 al. in press), we describe significant differences in zooplankton allometry and respiration 68 between major aquatic ecosystems, with freshwater species having lower length-specific mass 69 and three times higher mass-specific respiration rates. 70 While the main purpose of this database is to render trait information more readily available to 71 aquatic ecologists, this data set is also useful to highlight knowledge gaps in the literature, such 72 as an unbalanced research effort relative to trait type or aquatic field (Hébert et al. in press), and 73 thus to direct future research efforts. For example, this data set could be used to identify 74 underrepresented taxa within Copepoda and Cladocera in the trait literature. 75 This metadata file outlines the structure of the data set and provides references for all reported 76 observations. In spite of data limitations, this database allows for a more complete assessment of 77 trait relationships and trade-offs, promotes novel functional grouping/classification of species, 78 and may facilitate a trait-based characterization of community structure for further species- 79 ecosystem linkages. The release of this trait compilation, along with its companion meta-analysis 80 (Hébert et al. in press), aims to stimulate a search for general patterns amongst zooplankton taxa 81 and aquatic habitats, and to provide a better integration of plankton community ecology and 82 biogeochemistry through the use of effect traits. 83 METADATA 84 Class I. Data set descriptors 85 A. Data set identity 4 86 Title: A compilation of quantitative functional traits for marine and freshwater 87 crustacean zooplankton. 88 89 90 B. Data set and metadata identification codes Suggested data set identity codes: zooplankton_traits.csv, references.csv. C. Data set description 91 Investigators: same names and addresses as above. 92 Abstract: same as above. 93 D. Key words 94 Allometry, body size, carbon, corporal composition, effect traits, functional traits, 95 metabolism, nitrogen, phosphorus, physiology, stoichiometry, zooplankton. 96 Class II. Research origin descriptors 97 A. Overall project description 98 Identity: Classification and relationships of crustacean zooplankton functional traits: 99 linking organisms to ecosystems. 100 Originators: same names and addresses as above. Data were culled from the literature by 101 Marie-Pier Hébert as part of her graduate studies; this project was part of a Fonds de 102 Recherche Québécois sur la Nature et les Technologies (FQRNT)-team grant to RM and 103 BB. 104 Period of Study: 2012-2013. 5 105 Objective: the overall objective of this study was to promote the integration of 106 zooplankton community ecology and aquatic biogeochemistry through the use of traits. 107 Using data compiled from a wide variety of literature on crustacean zooplankton traits 108 contributing to elemental processes, we first quantified trait relationships amongst taxa 109 and between aquatic habitats. The aim was then to provide equations to predict trait 110 values to facilitate their use and propose a novel trait classification framework as a tool to 111 more readily link zooplankton organisms to the ecosystem processes they are likely to 112 influence. 113 Abstract: same as above. 114 Sources of funding: this project was funded by a Fonds de Recherche Québécois sur la 115 Nature et les Technologies (FQRNT)-team grant to RM and BB, the Groupe de 116 Recherche Interuniversitaire en Limnologie et en environnement aquatique (GRIL) as 117 well as an excellence award from the Faculté des études supérieures et post-doctorales 118 de l’Université de Montréal that supported MPH. 119 B. Specific subproject description 120 Site description: this data set primarily comprises data from peer-reviewed publications 121 (i.e., 183 articles and books), spanning a wide array of taxa from both marine and 122 freshwater habitats. It also contains information from gray literature, such as institutional 123 reports or theses, and data provided by colleagues (acknowledged below). In few cases, 124 inferences on the basis of knowledge on similar species were performed, e.g., for body 125 size of the same genus. In particular, this was done for some species of Bosmina, 6 126 Chydorus, Holopedium, and Skistodiaptomus (length and dry mass); and certain species 127 of Alona, Daphnia, Diaphanosoma, and Tropocyclops (for dry mass only). 128 Experimental/Sampling design: all data were obtained from the literature (articles, 129 books, theses) and zooplankton ecologists. Research methods are outlined below; 130 however, details on the statistical analysis of this data set as well as the emerging results 131 form the core of a companion manuscript (Hébert et al. in press). 132 Research methods: Web of Science (1945-2013) and Google Scholar databases were 133 searched in 2012 to find data sources on zooplankton nitrogen and phosphorus content 134 and excretion rates. Two separate searches were conducted including the following 135 keywords: (i) zooplankton* AND (nitrogen* OR ammonia* OR phosphorus* OR 136 phosphate*) AND excretion*, (ii) zooplankton* AND (elemental* OR nitrogen* OR 137 phosphorus* OR lipid* OR protein*) AND body* AND composition*. Both databases 138 were revisited in 2013 for information on zooplankton carbon content and respiration 139 rates, using two combinations of search terms: (i) zooplankton* AND respiration*, (ii) 140 zooplankton* AND (elemental* OR carbon*) AND body* AND composition*. 141 The Abstract, Results, and when necessary, the full text of each publication were then 142 manually searched to decide whether the study matched our selection criteria. References 143 cited in these articles were also checked and considered in our literature search. We only 144 selected studies that (i) included information for crustacean meso- and 145 macrozooplankton, i.e., essentially copepods and cladocerans as these are the most 146 studied groups (ostracods, mysids, amphipods, euphausiids were not included), (ii) 147 focused on adult individuals of female sex (few observations on male individuals were 7 148 retained but were marked accordingly), and (iii) provided species’ dry mass data from 149 which we could estimate individual-level excretion and respiration rates (or, inversely, 150 estimate mass-specific rates), and body composition as % elemental proportions of unit 151 dry mass. When provided, trophic groups (i.e., preferred diet) of species were recorded. 152 To minimize variance and potential bias, we focused on respiration rates expressed in 153 volume of oxygen (O2) given the difficulty in unit conversion (i.e., mol versus litre) when 154 environmental parameters are not provided (e.g., ambient pressure). 155 Ambient or experimental temperatures in studies of zooplankton metabolism (i.e., for 156 respiration and excretion rates) were recorded so as to further apply a standardized 157 temperature correction. Data were sometimes extracted directly from figures in articles or 158 reference books using the software Datathief III, (version 1.6, Bas Tummers ©). 159 Furthermore, this trait compilation includes a sub-data set containing body size estimates 160 and trophic groups for freshwater crustacean zooplankton species; the latter represents an 161 extension to Barnett et al. (2007) initially elaborated upon during a workshop of the 162 Canadian Institute of Ecology and Evolution (CIEE). The original estimates of body size 163 in this sub-data set were enhanced by the inclusion of data from several North American 164 datasets including the North Temperate Lakes Long Term Ecological Research (NTL- 165 LTER) site in Wisconsin, U.S.A., the Dorset Environmental Research Centre (DESC), 166 and data from the Experimental Lakes Area, Canadian Department of Fisheries and 167 Oceans (DFO) until 2012 and now part of the International Institute for Sustainable 168 Development (IISD-ELA). Dry mass estimates were based on taxon-specific length-mass 169 allometric equations (McCauley 1984; Culver et al. 1985). 8 170 Finally, details and description of the methods used to measure respiration rates provided 171 by colleagues G. Darnis and L. Fortier is described in Darnis and Fortier (2012); methods 172 used by T. Ikeda (unpublished data) to measure respiration and excretion rates are 173 outlined in Omori and Ikeda (1984) and Ikeda et al. (2000). 174 175 Class III. Data set status and accessibility A. Status 176 Latest updates: the formal literature search for trait information ended in December 177 2013. In 2014-2015, the following information have been added to the data set: 58 values 178 of total body lipid in marine species (data extracted from the references of Lee et al. 2006 179 and Vijverberg and Frank 1976), total body lipid and protein content for 14 freshwater 180 species (data extracted from the references of Vijverberg and Frank 1976, and Riccardi 181 and Mangoni 1999), over 100 body size observations (from diverse data sources), and 182 trophic group information for 59 marine species (most of which were borrowed from a 183 trait compilation available through Pomerleau et al. 2015). 184 Latest archive date: current. 185 Metadata status: current. 186 Data Verification: data were evaluated and double-checked for accuracy. Information 187 outside normal operating ranges were checked and compared to the original data 188 provenance. We outlined methods for treatment of data and outliers in the manuscript that 189 reviews and evaluates this data compilation (Hébert et al. in press). 190 B. Accessibility 9 191 Storage location and medium: original data files are held by the authors. The data set 192 published on Ecological Archives is the first release from this compilation of crustacean 193 zooplankton quantitative functional traits. 194 Contact person: queries about the entire data set or individual specific trait values can be 195 directed to Marie-Pier Hébert, email: [email protected]. 196 Copyright and proprietary restrictions: none. When using the dataset, we kindly 197 request that you cite this article, recognizing the work that went into gathering the data 198 together and the original authors’ willingness to make it publicly available. 199 Costs: none. 200 201 Class IV. Data structural descriptors A. (1) Data set file 202 Identity: zooplankton_traits.csv 203 Size: 1199 lines of data, excluding header row. Note that the number of individual 204 observations does not equal to the number of species, where the number of observations 205 for a single trait vary between 1 and 72 for a given species. As a result, when more than 206 one trait estimate was available, individual data lines were numbered accordingly, with 207 replicate numbers listed in a separate column (see section B). Overall, this data set 208 contains 8609 individual observations and ranges (i.e., group or habitat type excluded) on 209 201 freshwater and 191 marine crustacean zooplankton taxa. 210 Format and storage mode: comma-delimited, no compression. 211 Header information: headers are given as header name (e.g., type of trait). For each trait 212 value found in the literature, the reference numerical codes are indicated in the following 213 column (see section B for the description of trait abbreviation inserted in reference 10 214 column names). Complete references and their corresponding reference numerical codes 215 are provided in Class V, and the information on authors, year, title, journal, and 216 publication type is also provided in a separate .csv file to facilitate the use of our 217 reference list. For trait values expressed as ranges, the maximum and minimum values 218 are indicated in the two (max., min.) columns following the column for mean trait values 219 (see section B for trait abbreviation). For physiological traits, i.e., excretion and 220 respiration rates, the recorded temperatures are also indicated in the following column. 221 Alphanumeric attributes: mixed. 222 Special characters/fields: none. 223 (2) Reference file 224 Identity: references.csv 225 Size: 198 lines of reference data, excluding header row. 226 Format and storage mode: semicolon-delimited, no compression. 227 Header information: headers are given as header name, with separate columns for 228 reference numerical code, authors, year, title of the publication (e.g. article, book 229 chapter), name of the journal or book, and publication type. The complete bibliographic 230 information (e.g., volume, pages, edition) is however provided in Class V. 231 Alphanumeric attributes: mixed. 232 Special characters/fields: none. 233 B. Variable definitions 234 (1) Data set file Column name Genus Variable definition Units Scientific name (genus) N/A Storage type Character 11 Species Replicate.num ber Group Habitat Trophic.group Body.length Dry.mass Cct.prop Cct.total Nct.prop Nct.total Pct.prop Pct.total N:Pct Protein.ct Lipid.ct Respiration.rt. ind Respiration.rt. mg N-ammonia. ex.rt.ug.ind N-ammonia. ex.rt.ug.dm Scientific name (species); “-(M)” denotes the few male individuals. Number of individual investigated for a given trait, when N > 1 (ranging from 1 to 72). Taxonomically classified as: Copepoda; Cladocera. Freshwater habitat; Marine habitat. Preferred diet known as: Carnivore; Herbivore; Omnivore; Omnivore-Carnivore (OmniCarn); Omnivore-Herbivore (OmniHerb). Individual mean body length. Individual mean body dry mass. Mean proportion of C corporal content. Mean amount of C corporal content. Mean proportion of N corporal content. Mean amount of N corporal content. Mean proportion of P corporal content. Mean amount of P corporal content. Mean N:P molar ratio in corporal content. Mean proportion of protein in corporal content. Mean proportion of lipid in corporal content. Mean individual and mass-specific respiration rate. N/A Character N/A Numeric N/A Character N/A Character N/A Character mm mg % Numeric Numeric Numeric mg Numeric % Numeric mg Numeric % Numeric mg Numeric N/A Numeric % Numeric % Numeric µl O2 ind-1 h-1 µl O2 mgDM -1 h-1 Mean individual and mass-specific µg N-NH4+ ammonia (N-NH4+) excretion rate; ind-1 h-1 “ND” indicates values under µg N-NH4+ detectable thresholds*. mgDM-1 h-1 Numeric Numeric Numeric Alphanumeric* 12 N-ammonia. ex.rt.nmol.dm N-ammonia. ex.rt.nmol.ind P-phosphate. ex.rt.ug.ind P-phosphate. ex.rt.ug.dm P-phosphate. ex.rt.nmol.dm P-phosphate. ex.rt.nmol.ind N:P.ex Temp.trait Ref.trait Max.trait nmol N-NH4+ mg DM-1 h-1 nmol N-NH4+ ind-1 h-1 Mean individual and mass-specific µg P-PO43phosphate (P-PO43-) excretion rate. ind-1 h-1 ug P-PO43- mg DM-1 h-1 nmol P-PO43mg DM-1 h-1 nmol P-PO43ind-1 h-1 Numeric Mean N:P molar ratio in excretion; “ND” indicates values under detectable thresholds*. Recorded temperature for respiration (.resp.rt) and excretion (.Nex.rt and .Pex.rt) data; “RT” indicates measurements at room temperature‡. Corresponding reference numerical code. Trait abbreviations in column names refer to the following traits: .tg = trophic group; .bl = body length; .dm = dry mass; .C = C corporal content; .N = N corporal content; .P = P corporal content; .NP = N:P body ratio; .prot = protein content; .lip = lipid content; .resp = respiration rate; .N.ex = N excretion rate; .P.ex = P excretion rate; .NP.ex = N:P excretion ratio. Maximum value for a given trait; Trait abbreviations in column names are listed above, with the addition of: .Cprop = proportion of C content; .Nprop = proportion of N content; N/A Alphanumeric* Celcius Alphanumeric‡ N/A Numeric Subject to variation Numeric Numeric Numeric Numeric Numeric Numeric 13 Min.trait 235 236 237 238 Subject to variation Numeric Variable definition Units Corresponding reference numerical code Authors of the publication or data source. Year of publication, or consultation for online data base or unpublished data. Title of the publication, book chapter, or data set provided. Name of the journal or book, if published data. Type of publication: Article; Thesis; Book or book chapter; Institutional report, bulletin or memoirs; Open access online repository; Unpublished data. N/A Storage type Numeric N/A Character N/A Numeric N/A Character N/A Character N/A Character Abbreviations: DM: Dry mass; Ind: individual (2) Reference file Column name Ref.code Authors Year Title Journal.Book Pub.type 239 240 .Pprop = proportion of P content; .resp.mg = mass-specific respiration rate; .Nex.rt.ug.dm = mass-specific ugN excretion rate; .Nex.rt.nmol.ind = individual nmolN excretion rate; .Pex.rt.ug.dm = mass-specific ugP excretion rate; .Pex.rt.nmol.ind = individual nmolP excretion rate. Minimum value for a given trait; Trait abbreviations in column names: as above. C. Data limitations 14 241 Because of the large information gaps and data heterogeneity in the diverse forms of 242 literature, this data set comprises several limitations that may restrict the scope of further 243 analyses. In addition to the limited number of empirical observations for some of the 244 targeted traits, or less-studied cladoceran and copepod species, there was a lack of 245 stoichiometric information on food supply. This precluded the inclusion of food supply 246 stoichiometry in the data set, although we recognize the relevance of this environmental 247 driver in the assessment of zooplankton N and P excretion. Furthermore, although we 248 included studies from a wide range of marine and freshwater environments, most studies 249 retained were from temperate regions, resulting in an unbalanced spatial coverage. There 250 was a lack of specific information regarding the geographic origins of collected 251 individuals in studies involving lab experiments. As a result, the only level of 252 geographical resolution, or habitat type, that could be reasonably assumed for all species 253 included in the data set was the classification between marine and freshwater habitats. 254 Another limitation important to acknowledge is the diversity of research methods used to 255 measure traits (such as body composition or metabolic rates) among studies, introducing 256 potential sources of variation (i.e., noisy data). The variance or standard error were often 257 not provided with the trait values reported, making it impossible to weight the estimates 258 by the number of observations for further statistical analyses. Although these sources of 259 variation may sometimes limit the possibilities in terms of data analyses, we still explored 260 and quantified trait relationships among traits by giving equal weight to all trait values in 261 the meta-analysis accompanying this data set (Hébert et al. in press). Finally, we are 262 aware that more information on species body size, carbon content and trophic groups are 263 available in the literature; however, it should be noted that the focus of Hébert et al. (in 15 264 press) was initially on zooplankton excretion, with respect to body composition in terms 265 of nitrogen and phosphorus, and thus there was an unequal effort given to some non-focal 266 traits. This data set is expansive, but other traits and species could be added in the future; 267 for example, the inclusion of other crustacean zooplankton groups such as ostracods for 268 which there is likely less information in the trait literature. 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Special Publication of Bulletin of Tokai Regional Fisheries Research Laboratory 5:12–24. 274 275 ACKNOWLEDGMENTS 276 In addition to the aforementioned funding sources, we acknowledge discussion on zooplankton 277 size and trophic groupings with the working group on zooplankton dynamics at the CIEE, and 278 especially thank the Ontario Ministry of Environment - Dorset Environmental Research Centre 28 279 (DESC), the North Temperate Lakes Long Term Ecological Research site (NTL-LTER), as well 280 as the International Institute for Sustainable Development – Experimental Lakes Area (IISD- 281 ELA) for contributing information integrated to calculate some freshwater zooplankton body 282 lengths. We thank M. Kainz for his willingness to provide data on zooplankton lipid composition 283 as well as G. Darnis and L. Fortier for sharing their data on zooplankton respiration. 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