RIGA STRADIŅŠ UNIVERSITY IIze Strumfa CYCLOOXYGENASE-2 PROTEIN EXPRESSION IN GASTROOESOPHAGEAL TUMOURS - STUDY OF A COMPLEX INTERPLAY OF BIOLOGICAL AND TECHNOLOGICAL FACTORS Summary of PhD Thesis Speciality - pathology Riga - 2005 BACKGROUND Within the several last years, the role of the enzyme cyclooxygenase (COX) in carcinogenesis has caused great interest. COX catalyzes the rate-limiting steps for the conversion of arachidonic acid to prostaglandins and thromboxanes. Two COX isoenzymes have been definitely identified: COX-1 which is primarily constitutively expressed and COX-2, an inducible form which can be up-regulated by, for example, mitogenic stimuli, growth factors, cytokines, and carcinogens (DuBois et al., 1998). Whilst the incidence of fundic and distal gastric cancer has fallen over the last 50 years, there has been a dramatic increase in adenocarcinomas of the cardia and the oesophagus, particularly in the West (Corley and Buffler, 2001). At the same time, there has been a marked increase in the incidence of gastrooesophageal reflux disease associated with columnar cell metaplasia of the distal oesophagus (Barrett's oesophagus), a lesion which predisposes to oesophageal dysplasia and adenocarcinoma (Cameron et al., 1985). Whilst the genetic events leading to development of cancers of the cardia and oesophagus are poorly understood (Mueller et al, 2000; van Dekken et al., 2001), there is evidence implicating COX in their development. Epidemiologic, laboratory animal and clinical studies provide strong evidence that use of COX inhibitors (such as aspirin and other non-steroidal anti-inflammatory drugs, NSAIDs) reduces the risk of intestinal and other cancers (Thun et al., 1991; Baron, 2003; Funkhouser and Sharp, 1995; Farrow et al., 1998; Coogan et al.; 2000). Increased expression of COX-2 in vitro has been shown to have a number of cellular effects including increasing proliferation, reducing apoptosis (Tsujii and Dubois, 1995), promoting angiogenesis (Jones et al., 1999), and increasing invasive/metastatic potential (Tsujii et al., 1997), all of which may contribute to gastrointestinal carcinogenesis. Experimental data from the last decade has shown that: (i) COX-2 expression is increased in a number of malignant and premalignant tissues (Kandil et al., 2001; Zimmermann et al., 1999; Morris et al, 2001; Saukkonen et al., 2001) and (ii) genetic modulation or specific inhibition of COX-2 expression affects tumour yield in laboratory animals (Oshima et al., 1996; Liu et al., 2001; Hu et al, 2004), indicating that inhibition of COX-2 may be relevant for the prevention or treatment of human gastrointestinal cancers. The evidence implicating COX-2 in the pathogenesis of carcinomas of the oesophagus and proximal stomach comes from several sources. Epidemiological studies have shown a reduction in the incidence of oesophageal (Corley et al., 2003) and gastric (Baron and Sandler, 2000) carcinoma in persons taking NSAIDs. Ex vivo experiments using a Barrett's oesophagus (BE) culture model have shown that the constituents of gastroesophageal reflux, including acid and bile, can regulate COX-2 expression (Shirvani et al., 2000). It has recently been shown in an animal model of BE-related cancer, that use of selective and non-selective COX-2 inhibitors inhibits inflammation, COX-2 activity, and the development of reflux-induced adenocarcinoma (Buttar et al., 2002). Histological studies show that COX-2 is expressed in gastric and oesophageal cancers, and in their precursor lesions metaplasia and dysplasia. However, reported rates vary widely. Using immunohistochemistry (111C), epithelial COX-2 expression is seen in the oesophagus in 54.2% - 90.7% of squamous cancers (Zimmermann et al., 1999; Wang et al., 2002) and in 78% - 100% of adenocarcinomas (Zimmermann el al., 1999; Morris et al., 2001). Expression in oesophageal carcinoma precursors is even more variable, being seen in 0% - 75% cases of intestinal metaplasia (Zimmermann et al., 1999; Morris et al., 2001) and in 41% - 100% cases of dysplasia (Morris et al., 2001; Kandil et al., 2001). In the stomach, COX-2 cytoplasmic staining is reported in 42.6% - 100% of carcinomas and 44.4-100% of comparable premalignant lesions (Saukkonen et al., 2001; Lim et al., 2000). Most previous studies have concentrated on a qualitative or at best semiquantitative analysis of COX-2 expression in tumours. This reflects the general problems involved in IHC. However, attempts to use molecular methods of mRNA or protein quantification - e.g. based on whole tissue extracts - are hampered by the heterogeneous pattern of COX-2 expression in both tumour (epithelial) and nonneoplastic lesional tissue components such as stroma, vessels, inflammatory cells (Lim et al., 2000; van Rees et al.; 2002; Komhoff et al., 2000). This imprecision makes it difficult to determine the prognostic significance of COX-2 expression in premalignant gastrointestinal lesions. The exact location of COX-2 expression in tumours is also of importance in order to understand better its role in oncogenesis. For example, it is still unclear whether COX-2 acts via PGs directly on epithelial cells to promote neoplasia, or whether other cell types in the stroma are involved, perhaps with a paracrine effect. Thus, well-standardized immunohistochemical technique for the direct visualisation of COX-2 protein with exact estimation of technical bias would be significant as a tool for further studies of the COX-2 role in carcinogenesis and as background in the evaluation of already published controversial data. Such technique gains even greater significance as ongoing studies and meta-analysis will be necessary to clarify the protective and therapeutic role of COX-2 inhibitors in oncology. Aim: to study the role of cyclooxygenase-2 (COX-2) in upper gastrointestinal tract tumourigenesis, with emphasis on oesophageal and gastric adenocarcinoma, premalignant lesions of the oesophagus (Barrett's oesophagus) and gastrointestinal stromal tumours, as well as to study the relevant technological factors. Tasks: 1. To identify the confounding technological factors in COX-2 IHC and to describe in detail the influence of these factors on the results. 2. On the basis of experimental evidence by total test, to set up optimal protocol of the immunohistochemical investigation of COX-2 protein expression in different tissues. 3. To determine the frequency, intensity and pattern of COX-2 protein expression in oesophageal adenocarcinomas, Barrett's oesophagus and GIST. 4. To estimate the informativily of total test procedure and apply it on clinically important set of primary antibodies. Laboratory basis The presented work was carried out in the Institutes of Pathology, P.Stradin's Clinical university hospital and Aarhus University Hospital, Aarhus, Denmark. Scientific and practical diagnostic novelty 1. The first comparative description of the results of COX-2 protein expression by 8 primary antibodies and 7 HIER protocols will provide reasonable background for any future studies in COX field. The importance of the data is emphasized by the revealed tremendous technology-caused differences in COX-2 expression rate and pattern, concerning both malignant and benign tissues. The detailed pattern in dependence on antibody and HIER has not been published thus the data have world-wide significance. 2. COX-2 expression in GISTs is described, together with the description of technology-related influences. As Medline search for such data does not provide relevant information, the data are of world-wide significance. 3. COX-2 expression in Barrett's oesophagus is described. 4. The dependence of COX-2 protein expression levels on the age of archival tissue blocks is described. As there is lack of semi-quantitative studies of IHC results as a time function, the data will have world-wide significance. 5. Protocols for the visualisation of 48 antigens are adjusted for local tissue material gaining improved accuracy and positive economic effect. The data cannot be obtained from literature as are completely dependant on local peculiarities of fixation and other technological variations. 29 antigens targeted by standardized IHC technologies were approved by the Agency of Health Statistics and Medical Technologies of Latvia as new medical technologies in Latvia. Personal input The author has performed the whole work on the technologic investigation of COX-2 protein immunohistochemical expression, the COX-2 protein expression in Barrett's oesophagus, oesophageal and gastric adenocarcinomas and GISTs, including archive search, staining, evaluation and scoring, re-evaluation, data analysis. During the setup of immunohistochemical technologies, 80% of the tested procedures and the whole evaluation were carried out by the author. The help of qualified technician was available during obtaining microtome sections and performing 20% of the immunostains. The author was personally involved in the preparing data for evaluation and certification of immunohistochemical technologies and the Immunohistochemical laboratory. the Structure of the PhD Thesis The PhD Thesis is in English. It has the classic structure, consisting of Introduction, Literature review, Materials and Methods, Results, Discussion, Conclusions and List of references, in total 2.11 pages. The Thesis includes 22 tables, thorough illustrative material of 22 microphotographs and assembled microphotographs as well as analytically illustrative material of 43 graphs. In total, 67 figures illustrate the findings and conclusions. The list of references includes 312 sources. MATERIALS The following tissues were retrieved from the archives of the Institutes of Pathology, P.Stradin's Clinical University Institute and University Hospital, Aarhus University, Denmark. For the technological investigation of COX-2 IHC, blocks containing formalinfixed, paraffin-embedded (FFPE) tumour tissue as well as the normal components of the wall of gastrointestinal hollow organs were selected from 5 resected oesophageal and gastric adenocarcinomas. Three cases of resected squamous cell cancer were included in limited technological studies. Tissues of 8 GISTs and 8 tissue blocks, representing normal full-thickness gastric wall were retrieved as well. COX-2 expression in malignant epithelial tumours was studied in 21 resected oesophageal and gastric cancer (5 cases from the years 2002-2003; 16 - from 1982-1991). In order to study COX-2 expression in Barrett's oesophagus, 668 relevant biopsies were retrieved by SNOMED search using combined codes for intestinal metaplasia and oesophageal mucosa through years 1981 -1991. Appropriate tissues were retrieved in order to perform standardization of IHC as a novel technology (48 cases), to determine the frequency of the necessity to use IHC and to estimate the diagnostic value of IHC (36 cases). The tissues were fixed in 10% neutral buffered formalin, sampled widely during the grossing of operation material, processed and embedded in paraffin blocks (Hopwood, 2002; Anderson and Bancroft, 2002). Ethical concerns in obtaining tissue materials The present work does not give rise to ethical problems. All the above mentioned tissue materials have been removed for diagnostic or curative purposes. No additional investigations were performed on patients since all analyses were carried out on tissues previously removed for routine diagnostic purposes and which have been retrieved from the archives of participating pathology institutes. No human experimentation was involved. METHODS 4-micromctrc-thick sections of the FFPE tissues were cut with automatic microtome on Hislobond glass slides (Menzel Glasser, Germany) and stained with haematoxylin-eosin (HE) for screening ((iambic and Wilson, 2002). BE and cardiac intestinal metaplasia (C1M) were diagnosed as presence of goblet cells by Alcian blue-PAS stain at pH 2.6. The location of metaplastic changes within the oesophagus was determined by the presence of squamous epithelium adjacent to the intestinal metaplasia (1M). The cardiac location of IM was identified by the morphology of the cardiac mucosa, presenting with loose mucous glands and cystic changes in occasional glands. The endoscopic records were correlated with the microscopy. In order to study expression of COX-2 protein and to diagnose GISTs reliably as well as to create background for wide spectrum of scientific and clinical immunohistochemical studies, a new specialized branch of the Pathohistological laboratory was developed in the Institute of Pathology, P.Stradin's Clinical University Hospital within the frames of the presented work. The immunohistochemical technologies were standardized and submitted to the Agency of Health Statistics and Medical Technologies of Latvia (Veselības Statistikas un Medicīnas Tehnoloģiju Aģentūra) where the technologies were approved and the Immunohistochemical laboratory was certified. The frequency of use and diagnostic informativity of IHC was additionally analysed in the model of chest wall and pleural tumours. The standardization of IHC including the diagnostics of GISTs was carried out by the total test, implying that all concerned primary antibodies (DakoCytomation, Glostrup, Denmark) at full set of dilutions were tested upon different protocols of antigen retrieval. Different incubation time was tested instead of dilution for N-series of reagents (DakoCytomation). The bound primary antibody was detected by LSAB2 (DakoCytomation). For the technological investigation of COX-2 IHC, the staining patterns and intensity produced by 8 commercially available anti-COX-2 primary antibodies were characterized on consecutive sections of the same tissue blocks, thus limiting the differences to primary antibody and antigen retrieval. Using serial sections from the same blocks, sampling, fixing, processing and biological differences were excluded. The primary anti-COX-2 antibodies were: 1) monoclonal mouse antibody (catalogue number 160112; Cayman Chemical, Ann Arbor, MI, USA), obtained by immunisation with a synthetic peptide corresponding to amino acids 580-599 of human COX-2; 2) affinity-purified polyclonal rabbit anti-murine antibody (cat.nr. 160126; Cayman Chemical), known to be reactive with human COX-2, obtained by immunisation with a peptide corresponding to amino acids 584-598 of murine COX-2; 3) polyclonal rabbit antibody (cat. nr. PG 27b; Oxford Biomedical research, Oxford, Michigan, USA), obtained by immunisation with a synthetic peptide corresponding to a distinct C-terminal region of human COX-2; 4) affinity-purified rabbit antibody (cat. nr. 18516; ImmunoBiological Laboratories (IBL) Co, LTD, (Gunma, Japan), obtained by immunisation with a synthetic peptide corresponding to a part of human COX-2; 5) monoclonal mouse antibody, clone 131114 (cat. nr. 1021 1; IBL), obtained by immunisation with a synthetic peptide corresponding to a part of human COX-2; 6) monoclonal mouse antibody, clone 41112 (cat. code NCL-COX-2; Novocastra Laboratories Ltd., Newcastle upon Tync, UK), obtained by immunisation with a prokaryotic recombinant protein corresponding to amino acids 38-163 of the Nterminal domain of human COX-2; 7) polyclonal rabbit antibody (cat. nr. sc-7951; Santa Cruz Biotechnology, Inc., Heidelberg, Germany), obtained by immunisation with a recombinant protein corresponding to amino acids 50-111 mapping near the amino terminus of human COX-2; and 8) affinity-purified goat antibody (cat. nr. sc1745; Santa Cruz Biotechnology), obtained by immunisation with a synthetic peptide mapping at the carboxy terminus of human COX-2. Four primary anti-COX-2 antibodies were additionally investigated in GIST model: 1) monoclonal mouse antibody, Cayman Chemical; 2) polyclonal rabbit antibody, cat. nr. PG 27b; Oxford Biomedical research; 3) polyclonal rabbit antibody, cat. nr. sc7951; Santa Cruz Biotechnology; 4) affinity purified goat antibody, cat. nr. sc-1745; Santa Cruz Biotechnology. Two-micrometre-thick serial sections of the FFPE tissues were cut on electrostatically charged glass slides SuperfrostRPlus (Menzel-Glasser, Germany) and incubated in 60°C for 1 hour to ensure tissue adhesion to slides. Deparaffinisation and rehydration was carried out by routine treatment in xylene and graded ethanol. Endogenous peroxidase activity was blocked by immersing slides in 0.5% hydrogen peroxide (Bie&Berntsen, Rodovre, Denmark) in methanol for 10 min. After rinse in TBS for 5 min., slides were subjected to antigen retrieval. In total test all primary antibodies at full set of dilutions were tested upon 6 protocols of heat-induced antigen retrieval (HIER); treatment in microwaves 3x5 min. in basic (TEG, pH 9.0, Tris base l0mM/L, EGTA 0.5 mM/L, Bie&Berntsen) or acidic (CIT, pH 6.0, tri-Sodium citrate dihydrate 5 mM/L, di-Sodiumhydrogencitrat sesquihydrate 5mM/L, Bie&Berntsen) buffer, incubation in preheated TEG or CIT buffer at 90°C-30 min. or at 60°C-14 hours. After HIER, the slides were allowed to cool at room temperature (RT) for 20 min. in the HIER buffer. IHC staining without HIER was also performed. The slides were encircled with DakoCytomation pen (DakoCytomation A/S, Glostrup, Denmark) and transferred to magnetic immunostaining trays (CellPath plc, Newtown, UK). After rinse with TBS (pH 7.6, Tris buffered saline, THAM-HC1 50 mMl/L, NaCl 150mM/L) buffer for 5 min., the incubation with primary antibodies was carried out at RT for 60 min. The following dilutions of primary antibodies were tested: Cayman Mab 160112, 1:50, 1:100, 1:200, 1:400; Cayman AP-ab 160126, 1:100, 1:200, 1:500; PG 27b, 1:100, 1:200, 1:500, 1:1000; both IBL AP-ab 18516 and Mab, clone 131114, 1:25 and 1:50; Novocastra Mab, clone 4H12, 1:50, 1:100, 1:200; Santa Cruz Pab sc-7951, 1:50, 1:100, 1:200, 1:500; Santa Cruz AP-ab sc-1745, 1:100, 1:200, 1:500, 1:1000. DakoCytomation antibody diluent S0809 was used to dilute the primary antibodies. After incubation, slides were washed 3x3min.with TBS buffer. The relevant horse radish peroxidase-labelled polymer EnVision+ (K4001 antimouse, K4003 antirabbit; DakoCytomation) conjugated with secondary antibody was applied for 30 min. in RT to detect bound mouse or rabbit antibodies. After rinse with TBS (3x3min.), 3,3'-diaminobcnzidine (S3000, DakoCytomation) solution was applied for 10 min. Slides were washed and counterstained in haematoxylin for 3 min. After colour development in lap water, slides were coverslipped, using Aquatex (Merck 1.08562, Merck, Darmstadt, Germany). For Santa Cruz AP-ab sc-1745 of goat origin, following substitutions were made. The slides were preincubated with serum (4 drops of concentrated goat serum, Vectaslain Elite ABC kit, Vector Laboratories, Inc., Burlingame, CA, USA; diluted in 10 ml TBS buffer) for 5 min. immediately before the application of the primary antibody. The detection of primary antibody was carried out by secondary anti-goat antibody (3 drops of concentrated secondary antibody and 3 drops of concentrated serum, Vectastain Elite ABC kit, Vector Laboratories, Inc.; diluted in 10 ml TBS buffer) for 30 min. That was followed by ABC complex (3 drops of reagent A and 3 drops of reagent B, Vectastain Elite ABC kit, Vector Laboratories, Inc.; diluted in 10 ml TBS buffer) for another 30 min. The washing, colour development, counterstaining and coverslipping steps were performed as described before. Negative control slides were included in each run. The COX-2 protein expression was evaluated semiquantitatively in 20 elements (adenocarcinoma, undifferentiated areas of cancer, single-invasive cancer cells, signet ring cancer cells, squamous epithelium, parietal, chief, foveolar cells, mucous glands, IM, dysplastic cylindrical epithelium, plasma cells, macrophages, fibroblasts, erosions or ulcers, nerves and neurons, smooth muscle, endothelium, background and cell nuclei). Each of them was scored as negative, 0; weakly positive, 1; moderately intensively staining, 2; intensively positive, 3; brightly reacting, 4. If the staining in the element under concern was uneven within a slide, each field was scored separately and its area was evaluated in percents. The resulting score was used to characterize the staining of a morphologic structure element (cell type or tissue) from one case in a whole slide under definite technologic conditions. The resulting score of each morphologic element was calculated as sum of all products of score and percentage per slide. Summary scores were used to characterize the staining of a particular morphologic structure element under definite technologic conditions and were calculated as sum of resulting scores for this cell type from all cases, stained by one primary antibody at definite and the same dilution, implementing particular antigen retrieval. Total cancer score was designed to characterize the IHC COX-2 expression in cancer encountering all grades and was calculated as sum of scores characterizing adenocarcinomatous complexes and undifferentiated areas or single invasive cells under definite technologic conditions. The final cancer score was calculated as the difference between total cancer score and background score, For verification, the evaluation and scoring were performed twice. The optimal visualisation protocol was performed on oesophageal and gastric tumours as well as on biopsies containing RH and C1M. The evaluation was performed in 5-degree scale as described above. In the biopsies from BE and C1M, 16 elements were scored independently: squamous epithelium, parietal, chief, foveolar cells, mucous glands, intestinal metaplasia, dysplasia, plasmatic cells, macrophages, fibroblasts, erosions or ulcers, nerves and neurons, smooth muscle, endothelium, background and cell nuclei. The scale of real staining intensity was reflected in the scores of IM, squamous epithelium, macrophages. RESULTS Practical results: setting the Immunohistochemical laboratory During the first stage of the work, the Immunohistochemical laboratory was organised in the Institute of Pathology, P.Stradin's Clinical University Hospital. In the result of total test procedure, standardized concentrations and incubation time for 48 primary antibodies were detected. This set of technologies is intended for the following indications: 1) determination of the histogenesis of an anaplastic tumour, allowing to define the tumour as belonging to carcinoma, lymphoma, sarcoma, melanoma or glial tumour group; 2) differential diagnostics of soft tissue tumours, 3) diagnostics and differential diagnostics of GISTs; 4) subtyping of lymphomas; 5) analysis of the histogenesis and most probable site of origin in case of metastatic tumour; 6) differentiation between primary and secondary tumours of central nervous system; 7) discrimination between primary and secondary lung adenocarcinoma; 8) subtyping of primary lung tumours; 9) diagnostics and differential diagnostics of primary pleural tumours; 10) diagnostics of neuroendocrine tumours; 11) evaluation of prognostic factors in breast cancer; 12) exact evaluation of the spread of malignant tumour, including evaluation of the depth of invasion, microscopic extension to the resection line, presence of micrometastases or microscopic residual disease; 13) facilitation of the differential diagnostics between hyperplastic processes and cancer of the prostate; 14) evaluation of renal biopsies in cases of diffuse renal diseases. The standardization was carried out for FFPE tissues by the use of LSAB, ABC and EnVision visualisation systems. 29 antigens targeted by standardized IHC technologies were approved by the Agency of Health Statistics and Medical Technologies of Latvia as new medical technologies in Latvia. The Immunohistochemical Laboratory with complete technological set underwent certification as a branch of the Pathohistological laboratory, Institute of Pathology, P. Stradin's Clinical University Hospital. Informativity of the total test procedure In order to reach the highest standard of IHC visualisation, the staining protocol must be individualized in accordance to the local specifity. Carrying out the standardization of IIIC visualisation of 48 antigens by total test, the optimal IHC protocol for 44/48 antigens (91.6%) was found to be different from the guidelines. 31 primary antibodies were obtained as concentrated reagents. 1-or 24 of 31 antibodies (77.4%), both the optimal dilution and incubation time was found to be different from the guidelines. The optimal dilution was 1.25-10 times greater than the guidelines. These results are of huge practical importance and provide the evidence of the informativity of the total test procedure. There was a trend to correlation between isotype of the primary antibody and results of standardization. 17/18 (94.4%) of the monoclonal antibodies whose working dilution was raised after total test procedure belonged to IgG class. In contrast, only 4/5 (80.0%) of monoclonal antibodies, whose working concentration was not changed, belonged to IgG. The relative frequency of IgM in those groups was 5.6% and 20%, respectively. The relative frequency of polyclonal antibodies also was greater in the unchanged group: 2 of 7 (28.6%) vs. 4 of 22 (18.2%). Economic effect of the total test IHC is indispensable as it brings diagnostic and prognostic information that cannot be obtained by other medical technologies. The technological variables are of the utmost importance as they are directly related to the quality of visualisation and thus to the obtained data. However, the economical side also has to be evaluated. The expenses of IHC consist of the expenses for the primary antibodies, the visualisation system, accessory reagents and (he work load of the medical staff. The primary antibody is one of the most important and most expensive components. Assuming that the price of 1 mL of concentrated antibody is P, the recommended dilution 1: r, the standardized optimal dilution according to the results of the total test is found to be 1: s and 1 slide necessitates 250 microlitres of the working dilution, the expenses for primary antibody per slide are ER = P / (4 × r) if the recommended dilutions are used and ES = P / (4 × s) if the standardized dilutions are used. The economic effect per slide (EE) is: EE = ES - ER → EE=P / (4 × r) - P / (4 × s) → EE=P × (s - r) / (4 × s × r) The economic effect was obtained on 75.9%) of primary antibodies. It ranged from 4.67 LVS to 141.69 LVS per slide (mean 51.7 LVS per slide; median 42.77 LVS per slide; standard deviation 39.28 LVS per slide). For all but 1 of the restandardized antibodies (95.5%), the economic effect was equal to the residual expenses or exceeded those, thus saving more than 50% of the IHC budget for primary antibodies. Informativity of IHC Informativity of IHC was screened in a model of 36 neoplasms of the pleura and chest wall. In 10 cases, exact diagnosis was reached by HE. This group comprised 3 lipomas (intramuscular, subpleural, and subcutaneous), extra abdominal desmoid, neurofibroma, 2 chondrosarcomas (grade II and IIB), fibrous dysplasia of rib, osteoma and osteosarcoma. In 6 cases, definite diagnoses were suspected, but IHC was necessary to prove the histogenesis of the tumour. Five cases presented as small blue cell tumours of the chest wall. Despite examination of multiple tissue blocks, no exact diagnosis was reached by HE. IHC determined the diagnoses. 2 tumours represented primitive neuroectodermal tumour (PNET) of chest wall (Askin's tumour). The remaining 3 neoplasms were secondary - non-Hodgkin's lymphoma, small cell cancer, and recurrent corticomedullary thymoma. The general diagnoses of the secondary neoplastic processes were made by 3 primary antibodies. In contrast, diagnostics of PNET necessitated visualisation of 12 antigens: cytokeralin (CK), vimentin, CD45, S-100, desmin, CD34, CD31, NSE, synaptophysin (Syn), kappa, lambda, CD30. The tumour cells diffusely, strongly expressed Vim in the cytoplasm, but were completely devoid of CK, CD45, CD30, kappa, lambda, desmin, CD34 and CD31. Syn was moderately intensively expressed in the cytoplasm of a fraction of tumour cells. S-100 was focally positive in the nuclei and cytoplasm of the tumour cells. Expression of NSE in the malignant cells was diffuse, intense, cytoplasmic. In 11 cases, solitary fibrous tumour of the pleura (SFPT) was suspected. However, in all cases fibrous mesothelioma had to be excluded and 1 tumour had to be differentiated from other high-grade sarcomas. In 4 cases, the diagnostics was complicated as macroscopic origin from the pleura was not evident due to giant size (28 cm in diameter) of the tumour, dissemination throughout the chest wall in combination with giant intrapulmonary mass, and intrapulmonary location (2 cases). Panel of anti- CD34, CD31, thrombomodulin, desmin, S-100, BCL-2, and pancytokeratin resulted in diagnosis. All SFPTs were CD34 positive. The CD34 expression was cytoplasmic, intense (7/11 cases; 63.6%) or moderately intense (27.4%). The CD34 reactivity was lower in tumours with higher amount of thick, wavy collagen fibres and lower volume of tumour cell cytoplasm. The rate of BCL-2 expression was 8/11 (72.7%). BCL-2 reactivity pattern was cytoplasmic as well. The tumours were invariably negative for CD31, thrombomodulin (TM) and CK. Small focus (5% of cells) of desmin positivity was noted in 1/11 cases (9.1%). All the tumours were negative for S-100 protein; however, occasional S-100-positive tumour infiltrating macrophages were present in 1 case (9.1%). In 4 cases, mesothelioma was suspected; however, metastatic cancer could not be excluded by HE, mucicarmin and PAS stains. IHC confirmed the histogenesis. CK, high molecular weight cytokeratin, epithelial membrane antigen, vimentin, carcinoembryonic antigen, cytokeratin 5/6, TM, mesothelial antigen HMBE-1 and CD34 were searched for. The diagnostically most useful positive stains were the IHC of TM and CK5/6 that were positive in 4/4 cases. Both of them were remarkable for the lack of background and clear-cut specific pattern after appropriate standardization. The characteristic pattern for TM was thick membranous line, for CK 5/6 cytoplasmic reactivity. Both of them were expressed focally within a slide or case. HMBE-1 was detected in 2/4 cases. Only 30.3% (10/33) of the cases of primary chest wall and pleural tumours could be reliably diagnosed on the grounds of HE alone. IHC was necessary to confirm the diagnosis in 18.2% cases and mandatory in 51.5% (17/33) cases of primary pleural and chest wall tumours, including all pleural neoplasms and tumours presenting with small blue cell pattern. Thus, the first stage of the work resulted in selling up laboratory with standardized technologies and proved informativity. The dependence of COX-2 protein expression on technological factors The COX-2 protein expression was studied on consecutive sections from the same tissue blocks thus excluding biological, fixation, processing differences. Highly different patterns were found with different antibodies and protocols. Monoclonal mouse antibody. Cayman Chemical (Cayman Mab) Cayman Mab showed a characteristic granular cytoplasmic staining in the positive cancer cells. This pattern was shift to diffuse cytoplasmic if no HIER was employed. The nuclei were negative in protocols that yielded optimal staining of cancer cells. Undifferentiated cancer was intensively positive. The highest total cancer score was obtained after antigen retrieval in TEG in microwaves (MW). The retrieval in CIT buffer always resulted in lower cancer score than HIER in TEG. MW treatment yielded higher cancer scores than low temperature HIER. The background with Cayman Mab was slight. The optimal protocol as reflected by the highest final cancer score (table 1) included antigen retrieval in TEG MW and incubation in 1:100 diluted primary antibody for lhr in RT. Analysing COX-2 protein expression in squamous epithelium by Cayman Mab, qualitatively different distribution patterns were observed with different HIER modalities. After HIER in TEG MW moderately intense cytoplasmic staining was observed in basal layer, and weak granular perinuclear - in prickle cell layer. In reactive squamous epithelium adjacent to or overlying cancer weak to moderate suprabasal reactivity predominated. If no HIER was applied, moderately intense positivity was observed in prickle layer and parakeratosis, but basal layer was negative. Thus, although squamous epithelium was reactive with Cayman Mab upon all protocols, the results showed significant qualitative and quantitative differences. Cayman Mab consistently brightly stained parietal cells. The pattern was diffuse cytoplasmic with more intense intracytoplasmic large dots and segments of circles that were situated paranuclearly or confluent with nuclear or cellular membrane and probably represented canalicular system. The cytoplasm of chief cells was stained upon cancer-effective protocols. Cayman Mab focally, moderately intensively stained atrophic mucous glands. In foveolar cells, mucus and nuclei were negative, but weak to moderate reactivity was present in the basal cytoplasm, with relatively highest intensity after TEG MW. Sharply demarcated foci of supranuclear and subnuclear cytoplasmic positivity in IM and dysplasia were restricted to HIER in MW. Plasma cells were positive with Cayman Mab, most intensively after HIER in TEG MW. Macrophages in lamina propria, submucosa and cancer stroma reacted intensively. The highest scores were obtained with any kind of HIER in TEG (table 2). HIER in CIT was less effective but reactivity of macrophages was relatively less influenced by the pH 1 of HIER buffer than the reactivity of plasma cells. Intensity of COX-2 expression in fibroblasts in submucosa or desmoplastic stroma correlated strongly with the reactivity in macrophages. Cayman Mab showed intense cytoplasmic reactivity in fibroblast- and macrophage-like cells in erosions and ulcers. The reactivity was so intense that it was preserved with less efficient antigen retrieval or high dilution of primary antibody, when other elements are already negative. These slides (TEG 90°C, 1:400) showed the "erosion only" pattern. The staining in smooth muscle was of low intensity except no-retrieval technique that resulted in focal or general moderate positivity. Tiny cytoplasmic granules were found in the cytoplasm of smooth muscle fibres. Endothelium was mostly unreactive with Cayman Mab. Neuronal bodies were slightly more intense as nerve fibres. Cancer stain was more dependent on the amount of the absorbed energy that plasma cell score and macrophage score was least sensitive to the temperature regimen. All scores, their relations and staining pattern changed if no HIER is applied, effect, that cannot be explained solely by higher background. Polyclonal anti-COX-2, Oxford Biomedical research (PG 27b) In adenocarcinoma, PG 27b showed unique "supranuclear cleaved dot" pattern compact or blending cluster of intensively stained grains at the apical side of the nucleus. The reactivity was highly heterogeneous. In solid cancer, the granules were small and evenly distributed in the cytoplasm. Partial membranous or apical intense or moderate reactivity in cancer cells was case-dependant. In squamous cell cancer, the few positive cells showed intense diffuse cytoplasmic reactivity. The most effective antigen retrieval for this antibody was heating in TEG at 90°C for 30 min. (table 1). Treatment in MW, as well as prolonged low temperature HIER at 60°C yielded less cancer reactivity. CIT was significantly less effective than TEG. PG 27b showed almost no background. The optimal protocol for PG 27b included HIER in TEG 90°C and overnight incubation in diluted primary antibody (1:500) at 4°C. In squamous epithelium, with overnight incubation in 1:500 at 4°C after HIER in TEG 90°C, moderate granular cytoplasmic reactivity was noted in squamous epithelium adjacently to cancer. Remote epithelium showed weak unspecific positivity in the upper layers. Occasional weak dot-like reactivity was observed in parietal cells. Occasional diffuse reaction was observed in the basal part of gastric corpus glands: chief cell-rich area. A combination of 2 staining patterns was observed in the foveolar epithelium with PG 27b. The most common pattern was diffuse staining of foveolar mucus. Another pattern was focal presence of supranuclear dots in foveolar epithelium. PG 27b did not react with glandular mucous epithelium. The characteristic supranuclear dot-like reactivity was observed in the deep IM. No mucus reactivity in IM was observed in contrast to foveolar epithelium. The positive dots in dysplastic surface epithelium were blurred. Thus, PG 27b showed markedly different epithelial patterns - the most characteristic, supranuclear cleaved dot; apical or membranous in cancer cells; highly heterogeneous intense cytoplasmic in squamous cell cancer; diffuse small cytoplasmic granules in diffuse cancer; and diffuse, weak or moderate, probably unspecific reactivity in foveolar but not colonic mucus. The stromal reactivity with PG 27b was limited, of diffuse cytoplasmic type, when present. Macrophages and fibroblasts in erosions were intensively positive (table 2). Small subset of plasma cells showed cytoplasmic reactivity. No endothelial or nerve reactivity with PG 27b was observed. The reactivity of smooth muscle did not exceed the background. Affinity purified anti-COX-2, IBL (IBL AP-ab) The epithelial pattern of IBL AP-ab was diffuse cytoplasmic, consistently combined by recognition of subset of mitoses. A larger subset of atypical mitoses was stained although reactivity in normal-appearing mitoses also was found. IBL AP-ab showed unique trait-the reactivity with mitotically active cells. The optimal protocol included HIER in MW in TEG buffer, incubation with IBL AP-ab at dilution 1:25 for 60 min. at RT. The impact of the pH of HIER buffer was especially marked for this antibody (table 1). Diffuse cancer reacted weaker than adenocarcinoma, signet cells were negative. The cancer reactivity colocalised with Cayman Mab, but was weaker and more influenced by pH of HIER buffer. IBL AP-ab showed variable, mainly moderate levels of background in dependence on the mode of HIER. After HIER in TEG MW, intact squamous epithelium showed weak paranuclear or central cytoplasmic accentuation. In reactive areas, basal layer was weakly positive but prickle cell layer showed moderate cytoplasmic positivity. Without HIER, only reactive squamous epithelium showed weak cytoplasmic positivity in prickle layer and upwards, but the basal layer and remote squamous epithelium was negative. This difference was in accordance with weaker sensitivity as reflected also by lower total cancer scores (TEG MW 17.8 vs. no HIER, 11.54). Although CIT MW resulted in low total cancer score, the weak reactivity in squamous epithelium was partly preserved. Parietal cells showed moderately intense finely granular cytoplasmic reactivity that became intense in some parietal cells in the upper part of glands. Occasional weak reactivity in chief cells was found. The reactivity of IBL AP-ab with the foveolar epithelium was variable between cases and protocols. After HIER in TEG MW, there was a trend to weak or moderate basal cytoplasmic reactivity in the proliferative area, with negative surface epithelium and mucus (4/4). After HIER in CIT, the reactivity decreased to weak or disappeared. HIER in TEG 90°C resulted in greater variability between cases. The variability decreased again with TEG 60°C and protocol without HIER. Although low temperature HIER in TEG caused greater variability, the positive results colocalised in all TEG protocols. The correlation was not preserved if no HIER was applied: completely different cases became negative and positive, respectively. All TEG-based HIER protocols, HIER in CIT MW and staining without HIER resulted in focal cytoplasmic reactivity in the mucous glands. IM showed a combination of focal cytoplasmic reactivity and brightly staining subgroup of endocrine-like cells. The cytoplasmic reactivity was best evident after HIER in TEG MW or staining without HIER but it was not present after CIT 60"C. Dysplastic surface epithelium locally moderately intensively reacted after HIER in TEG MW and staining without HIER. Endocrine-like cells were best seen if HIER was performed in TEG 90"C or in TEG 60°C, and were less intense in TEG MW, CIT 90°C or CIT 60°C. This subpopulation was not evident after HIER in CIT MW and staining without HIER. Thus, omitting HIER lead to qualitatively different pattern in the aspect of IM: although the intensity of cytoplasmic reactivity was relatively high, the subpopulation of brightly positive cells was not evident; result that is not consistent with different sensitivity only. IBL AP-ab reacted with plasma cells (table 2). The pattern was mostly perinuclear, but cytoplasmic positivity occurred after TEG MW and in the highly reactive subset. IBL AP-ab recognised macrophages and fibroblasts although the reactivity was less intense as with Cayman Mab. HIER in TEG retrieved most reactivity. Macrophage and fibroblast-like cells in erosions showed intense cytoplasmatic reactivity. Endothelium was consistently weakly positive after TEG MW, consistently negative after HIER with CIT MW. Without antigen retrieval, the reactivity was variable, from no staining in 2/5 cases to moderately intense positivity in 2/5 cases. The reactivity of smooth muscle was weak to moderate. Nerves were mildly or moderately reactive. Monoclonal mouse anti-COX-2, IBL (IBL Mab) The characteristic trait of IBL Mab was extremely low reactivity with epithelia. It showed weak traits of cancer reactivity (scores between 0 and 1, weak) if HIER was done in TEG MW or if staining was performed without HIER. Other protocols yielded completely negative cancer scores (table 1). In the squamous epithelium, only parakeratosis was weakly positive in resting epithelium after no HIER or TEG MW. The upper prickle layer and parakeratosis in reactive squamous epithelium were intensively positive, if no HIER was applied. Without antigen retrieval, parietal cells were very weakly positive (3/3). This reactivity disappeared after treatment in MW. The reactivity in chief cells was weakto-moderate, without clear-cut correlation with the type of antigen retrieval. IBL Mab did not stain mucous glandular epithelium. Foveolar epithelium was mostly unreactive as well except for 1/3 cases after HIER in CIT MW. In this slide, a subset of endocrine-like small cells was highlighted in foveolar proliferative zone. The pattern was granular cytoplasmic; nucleus in these cells was situated apically. IM and dysplasia were consistently negative. In contrast to the lack of definite reactivity in epithelia, intense reactivity was present in a subset of plasma cells after HIER in TEG MW in all cases. After HIER in TEG MW, bright reactivity in fibroblast-like cells was detected in small erosions (table 2). Macrophages and fibroblasts apart from erosions did not show reliable reactivity. Endothelium and smooth muscle were mostly negative. Nerve cells and fibres showed weak reactivity in 4/5 cases after 1 HER in TEG and in 3/5 cases if no antigen retrieval was performed. The general pattern for 1BL antibody included cancer negativity in combination with bright reactivity of macrophage and fibroblast-like cells in erosions and a subset of plasma cells. Affinity-purified polyclonal antibody, Cayman Chemical, (Cayman AP-ab) This antibody showed a combination of cytoplasmic, membranous and apical reactivity in cancer cells. The most effective HIER for cancer testing was TEG 90°C (table 1). Cayman AP-ab reacted with diffuse cancer although the reaction was estimated weaker as with Cayman Mab. This may be due to background or lack of recognisable pattern. In the squamous epithelium, basal layer was weakly positive, and prickle cell layer showed weak perinuclear and nuclear reaction after HIER in TEG MW. After HIER in TEG 90°C, basal layer showed moderate cytoplasmic positivity, but prickle cells weak cytoplasmic reaction with slight perinuclear accentuation. Squamous epithelium was negative after HIER in CIT MW, CIT 90°C, TEG or CIT 60°C. If no HIER was applied, the basal layer was negative, but prickle cell layer in the areas of squamous epithelium overlying cancer still showed weak granular cytoplasmic reactivity with perinuclear accentuation. Parietal cells were intensively reactive with Cayman AP-ab in all protocols. The highest scores were reached with TEG MW and TEG 90°C. At higher dilutions, dots on the background of paler positive or even negative cytoplasm became evident, the pattern analogous to that of Cayman Mab. At higher dilutions, the gradient also became evident: the staining was more intense in those parietal cells that were situated in the deep part of gastric gland, the reverse as for IBL AP-ab. There was no definite evidence of chief cell positivity with Cayman AP-ab. After TEG MW, 2/3 cases showed weak staining in basal cytoplasm of foveolar cells, but not mucus. After HIER in TEG 90°C the reactivity was higher reaching moderate degree. There was a trend to reactivity in proliferative zone. Cayman AP-ab did not react with mucous glandular epithelium. IM was positive after HIER in TEG MW and 90°C. However, both nuclear and cytoplasmic reactivity was present, suspicious for unspecific reaction. No reliable reactivity in dysplastic epithelium was observed. Most of plasma cell reactivity was obtained after TEG 90°C, closely followed by TEG MW (table 2). TEG 60°C was significantly less effective; HIER in CIT yielded very low results. Protocol without HIER gave results comparable to those after CIT retrieval. The same case as with Cayman Mab and IBL was most intensively reactive. The reactivity of macrophages, fibroblasts and cells in erosions was intense cytoplasmic. Again, using high dilutions (TEG 90°C 1:500), it was possible to observe "erosion only" pattern. Consistent bright reactivity was observed in nerve fibres and cells. The reactivity was highest after TEG 90"C, closely followed by TEG MW. Retrieval in CIT was always less effective than in TEG. Muscular reactivity was mostly weak with 1 HER. The endothelial reactivity was up to moderate, and thus higher than with Cayman Mab, PG 27B, 1151. Ap-ab or 1BL Mab. It was the highest at TEG 90°C and persistent weak at TEG MW and no HIER. None of the tested protocols showed good cancer reactivity without endothelial staining. Novocastra monoclonal antibody (NC Mab) The reactivity pattern with NC Mab in cancer cells was diffuse cytoplasmic with frequent nuclear reactivity. Small foci of Cayman Mab type reactivity pattern with "supranuclear cobblestone" were noted. Diffuse cancer and signet ring cells were mostly unreactive. NC Mab stained secretions in the lumina of cancerous complexes in higher intensity than the cancer cells. This antibody followed the general rule of greater sensitivity after HIER in TEG. Low temperature HIER was more effective than treatment in MW (table 1). The antibody was almost unreactive if no HIER was used. NC Mab showed high background scores after HIER in TEG 90°C and TEG 60°C. However, due to high cancer reactivity, the final cancer scores for these protocols were high. In squamous epithelium, after HIER in TEG 90°C or TEG 60°C there was intense perinuclear reactivity in basal and prickle cell layer. In squamous epithelium overlying cancer, the stain was intense cytoplasmic with negative borders, mainly suprabasally and in prickle cell layer. CIT 90°C, CIT 60°C and TEG MW showed the same pattern with weaker expression. CIT MW resulted in very weak reaction. Without HIER, the squamous epithelium was negative as were most other structures. Parietal cells were reactive with NC Mab upon all protocols. The highest - intense reactivity was obtained with TEG 60°C. TEG and CIT 90°C resulted in moderate intensity, TEG MW and CIT 60°C - in moderate to weak, CIT MW and the protocol without HIER - in weak. The reactivity of parietal cells was preserved even in CIT MW, CIT 60°C, and no HIER protocols, especially standing out in the background of overall negativity in the last case. Chief cell showed marked reactivity with NC antibody. It was intense after TEG in all regimens, less with CIT-based retrieval, but absent, if no HIER was applied. The general pattern of foveolar reactivity with NC Mab was basal cytoplasmic staining in proliferative area. The surface epithelium was negative or weaker reactive. Foveolar mucus was consistently negative. The staining was comparably intense and consistent if HIER was performed in TEG (in any temperature regimen), CIT 90°C or in CIT 60°C. The reactivity was estimated as moderate or intense, evaluating the basal (subnuclear) cytoplasm. 2/3 cases showed weak reactivity if HIER was not applied or was performed in CIT MW. In glands, mucus was unreactive. Focal moderate cytoplasmic reaction was evident in basal cytoplasm, except for the protocols without HIER or with HIER in CIT 60°C or CIT MW when the reaction was weak, limited to small foci and 1/4 case. NC Mab stained 1M locally, most intensively after HIER in TEG 90°C or 60°C, followed closely by TEG MW. TEG 90°C resulted in sharply demarcated foci of reactivity in dysplastic surface epithelium. Although plasma cells were positive upon some protocols, the reactivity was weak to moderate (table 2). Relatively higher scores were gained with TEG 90°C, TEG 60°C, and TEG MW in decreasing order. HIER in CIT and protocols without HIER gave negative results. Reactivity of macrophages and fibroblasts with NC Mab was generally weak, reaching moderate degree only after HIER in TEG at 60°C. In sharp contrast with the previously described antibodies, erosions were unreactive upon all protocols. TEG at 90°C 60°C resulted in consistent weak to moderate endothelial staining. TEG MW resulted in consistent weak endothelial staining in 4/5 cases. The protocols that have not been effective for cancer resulted in least endothelial stain - CIT MW, CIT 60°C, CIT 90°C, and no HIER. NC Mab was at least weakly reactive with nerve fibres and neurones after TEG MW. Neurones showed more intense reactivity. TEG 90°C and TEG 60°C resulted in the maximal reactivity for this antibody that was moderate in average. The neuronal bodies were intensely reactive after TEG 90°C. CIT MW and no HIER resulted in areactivity. CIT 60°C and CIT 90°C result in consistent weak reaction in the nerve fibres. Muscle reactivity was moderate or higher with TEG 90°C and TEG 60°C and moderate after TEG MW and CIT 90°C. CIT MW and no HIER resulted in much less reactivity in conjunction with bad general sensitivity. For NC Mab, cancer reactivity correlated with muscular. A trend towards uneven muscular reactivity with higher scores at lamina muscularis mucosae, vascular muscle, and muscle adjacent to invasive cancer complexes was noted. Santa Cruz anti-COX-2 antibody sc-7951 The cancer reactivity was pale, diffuse cytoplasmic, highly heterogeneous. The lack of recognisable pattern burdened the discrimination between true reactivity and background. Most reactivity was retrieved by incubation in basic buffer at 90°C for 30 min. (table 1). Sc-7951 had generally low background scores, but low final cancer scores due to low cancer reactivity. Sc-7951 showed also different patterns in epithelia: in squamous epithelium, there was cell border accentuation in prickle layer; small cuboidal cells were positive in foveolar proliferative area; intercellular lines in dysplastic surface epithelium were noted. Squamous epithelium after HIER in TEG 90°C showed weak to moderate membranous positivity in prickle cell layer and occasional weak perinuclear accentuation. The basal layer was negative. Intraepithelial mononuclear cells (IEM) were moderately cytoplasmically positive. The pattern was preserved in CIT 90°C. TEG MW resulted in weak membranous and focal weak perinuclear reaction in prickle cell layer. 1KM showed moderate cytoplasmic reactivity. Other protocols resulted in either negative results or undefined pattern. Intensity of staining in parietal cells was case-dependant. In the best-reactive case, the pattern included moderate cytoplasmic reactivity, membranous accentuation and occasional dot-and ring-like structures reminiscent of those seen with Cayman Mab antibody. Although there were fewer differences among protocols than among cases, TEG MW and TEG 90"C retrieved more reactivity. Foveolar epithelium was mostly unreactive with sc-7951. In 1/4 cases a subset of small cubical cells was identified in the foveolar proliferative area. The reactivity of these cells was moderate after HIER in TEG 90°C, weak after HIER in TEG MW or CIT 90°C, weak and limited to rare cells after HIER in C1T MW or staining without HIER. HIER in 60°C did not highlight this subset of cells. Mucous glands were mostly negative with sc-7951. In 2/3 cases, there was focal weak reactivity in IM: cytoplasmic reactivity was observed in deeper parts of metaplastic glands that contained also a subpopulation of brighter positive round cells. The reactivity of dysplastic surface epithelium was limited to intercellular lines and paranuclear vacuoles, possibly serum leaks. Plasma cells were weakly or focally moderately positive with this antibody (table 2). TEG 90°C and TEG MW were the most effective. HIER in CIT or protocols without HIER resulted in pale reactivity. Reactivity of macrophages and fibroblast did not exceed moderate. No cytoplasmic positivity was observed in cells located adjacently to erosions or subepithelially. Sc-7951 resulted in weak reactivity in neural fibres almost independently of the mode of antigen retrieval. Smooth muscle mostly stained weakly, endothelium showed inconsistent weak stain. Santa Cruz affinity purified anti-COX-2 antibody sc-1745 Sc-1745 showed 2 staining patterns in cancer cells: trend to membranous enhancement and diffuse cytoplasmic reactivity. The most efficient HIERs for sc1745 were TEG MW, TEG 90°C. Sc-1745 reacted with diffuse cancers relatively weaker than Cayman Mab but had the highest reactivity with signet-ring cells. It showed moderate background scores. The final cancer scores were high for HIER in MW or 90°C (TEG more effective that CIT), and TEG 60°C (table 1). In squamous epithelium, after HIER in TEG MW, moderate to intense cytoplasmic reactivity with basal membrane accentuation was present in the basal layer. In CIT, the pattern was preserved; possibly due to lower background, focal perinuclear positivity was discernible. After TEG 90°C, in addition to intense positivity in the basal layer weak to moderate paranuclear reactivity was also observed in the prickle cell layer. The epithelium adjacent to cancer reacted less intensively than the remote epithelium. After HIER in CIT 90°C and TEG 60°C, reactive squamous epithelium became negative. CIT 60°C and protocol without HIER resulted in negative squamous epithelium. Parietal cells were weakly reactive with sc-1745 after TEG based HIER (MW, 2/2; TEG 90°C, 2/2; TEG 60°C; 1/2) or without HIER. CIT-based retrieval resulted in loss of this reactivity. Background was difficult to exclude. The most intense positivity within the gastric corpus glands was situated around the lumen in the deep part of gland. The localisation corresponded to the apical cytoplasm of chief cells. Intense reactivity of such type was achieved by HIER in TEG 90°C and TEG 60°C, moderate - by CIT 90°C. HIER in MW resulted in mostly weak reaction, but CIT 60"C and no HIER- in negative reaction. Intensively positive small round cells were noted in normal gastric glands. A characteristic trait of sc-1745 was trend to diffuse, total reactivity in foveolar epithelium. It was intense after HIER in TEG, moderate with trend to proliferative zone after HIER in CIT. The foveolar epithelium was mostly negative (2/3 cases) if HIER was not performed. IM was totally positive with sc-1745 as well. The positivity was equally intense in the basal and upper part of metaplastic glands (surface more intense as deep part after HIER in TEG, 60"C) and extended to dysplastic surface epithelium. The intensity was highest after HIER in TEG. A subpopulation of endocrine-like positive cells was evident also in the basal part of metaplastic glands after HIER in 90°C. Plasma cells were moderately reactive (table 2). Intense reactivity was reached in 1/5 by TEG MW; 3/5 TEG 90°C, 1/5 TEG 60°C. CIT-based HIER was less effective. The highest results for an individual case were reached by TEG MW in 2/5 cases and TEG 90°C in 3/5 cases. Staining was cytoplasmic with occasional Golgi complex or peripheral accentuation. Mostly moderate reactivity of macrophages and fibroblasts and intense reactivity in erosions was observed with this antibody. Neural reactivity was present. Sc-1745 showed high scores for smooth muscle in all protocols. Focal accentuation in lamina muscularis mucosae and in muscle in ulcer bed was noted. Table 1. Total cancer reactivity, background score and resulting cancer score Primary Antigen retrieval 1 TEG MW CIT MW TEG 90°C CIT 90 °C Score Cayman Mab 2 PG 27b IBL AP- IBL Mab ab 5 antibody Cayman AP-ab NC Mab Sc7951 Sc-1745 3 4 6 7 8 9 10 TCR 19.2 6.7 17.8 0.7 13.75 15.1 5.77 14.70 BS 0 0 2.5 5 9.5 5.5 2 0 RCS 19.2 6.7 15.3 -4.3 4.25 9.6 3.77 14.7 TCR 17.1 1.81 4.23 0 2.58 2.35 1.32 10.91 BS 0 0 0.5 0 1 1 0.54 0 RCS 17.1 1.81 3.73 0 1.58 1.35 0.74 10.91 TCR 16.2 15.19 14.55 0 17.9 22.55 7.04 21.12 BS 2.5 0.75 1.5 0 11 9 2.56 3 RCS 13.7 14.44 13.05 0 6.9 13.55 4.48 18.12 TCR 15.6 6.45 4.31 0 6.25 12.40 4.40 13.14 BS 2.5 0 0 0 1.5 5 2.6 1 RCS 13.1 6.45 4.31 0 4.75 7.40 1.8 12.14 1 TEG 60°C 2 TCR BS RCS TCR 3 17.2 2.5 14.7 10.4 4 5.51 0 5.51 2.51 5 17.20 4.5 12.7 1.05 6 0.1 0 0.1 0 CIT 60°C BS 0 0 0 10.4 17.2 15 2.51 1.57 0 2.2 1,57 RCS NO HIER TCR BS RCS 7 7 1 6 1.3 8 21.85 10 11.85 5.15 9 4.15 2 2.15 2.50 10 16.87 4.5 12.37 7 0 1 1 0 2 1.05 11.54 3.5 0 0.8 1 0.3 8.2 7 4.15 1.74 0 2.50 0.8 0 5 2.55 3.5 8.04 -0.2 1.2 1.74 0.8 -0.95 Sc7951 Sc1745 Table 2. Stromal COX-2 reactivity expressed as summary scores Cell/ Antigen structu retrieval re 1 2 Plasma TEG MW cells CIT MW TEG 90°C CIT 90°C TEG 60°C CIT 60°C No HIER Smoot TEG MW h muscle CIT MW TEG 90°C CIT 90°C TEG 60°C CIT 60°C No HIER Endoth TEG MW elium CIT MW TEG 90°C CIT 90°C TEG 60°C CIT 60°C No HIER Nerves TEG MW CIT MW TEG 90°C CIT 90°C Caym PG an Mab 27b 3 10.8 2.5 6.25 1.7 5 0 3.3 4.2 3.3 2.5 3.3 1.7 0.8 5.8 1.7 0 1.7 0 0 0 2 10 5.4 6.7 8.3 4 0 0 0 0 0 0 0 0 0 0.5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Primar antibody y IBL Caym NC IBL AP-ab Mab an AP Mab 5 6 7 8 9 10 4.5 0.5 4.5 1.5 8.5 2 6 6.5 3 5.75 4.25 6.5 3.75 8.5 5 0 5.5 2.5 7.5 0.5 5 6.75 4.25 7.00 5.00 15.5 4.5 1 0 6.5 0 8 1 0 0 0 0 0 4 1 0 0 0 0 0 1 3.5 0 0 0 10.2 2.75 13.5 2.5 5 0.75 3.25 3.5 1 4.5 1 1 0 7.5 5.5 1 9.5 1.5 3.5 0 5.5 12 7.5 13 9 5 0 8 1 7 0 0 9 1 11.7 9.75 13 6.5 1 3.5 0 8 3 8.5 0.5 0.5 6.5 1.75 8.5 6.5 5.5 1 6 2.5 5.25 0 0.5 1.5 1.5 5.5 6 0.5 0 1.5 2 0 4.5 1 2.5 0.5 0 4 3 4.5 4.75 7.25 2.5 8 2.5 4 0.5 1.75 10.7 6.5 13.5 7 13.7 10.2 7 7 2 8.5 5 8.5 0 4 7.5 5.6 9.75 9.1 1 2 Nerves TEG 60°C CIT 60°C No HIER TEG MW Macro CIT MW phages TEG 90°C CIT 90°C TEG 60°C CIT 60°C No HIER TEG MW Fibrob CIT MW lasts TEG 90°C CIT 90°C TEG 60°C CIT 60°C No HIER Erosio TEG MW ns CIT MW TEG 90°C CIT 90°C TEG 60°C CIT 60°C No HIER 3 6.7 5 8.3 14.2 10.8 14.6 11.2 15 5 10 14.2 9.2 15 10.8 15 5.8 10 15 15 15 15 15 15 15 4 0 0 0 1.5 1 1 0 0 0 0 0.5 0 0 0 0 0 0 13.3 7.5 17.5 5 12.5 0 6.25 5 10.0 4.50 6.5 10.5 5.5 9.5 4.5 13 4.5 5.5 11 4.5 9.5 4.5 13 4.5 7 16.7 11.7 9.17 6.25 17.5 2.5 12.5 6 0 0 2.5 2 0 1 0 0.25 0 0.5 1.5 0 0 0 0 0 0 17.5 5 6.25 2.19 15 3.75 6.9 7 9.5 7.5 8.5 10 3 12 4 7.5 2 5.5 8.5 3.5 12.5 4 7.5 1.5 6 14.4 3.75 16.3 8.75 10 2.5 3.75 8 8.5 5 1 3.5 0 6.5 2 8 0 0 4 0 4 2 8.5 0 0 0 0 0 0 0 0 0 9 3 0 1 6 3 8 1.75 3.5 0 0 4.5 3 7 1 0.5 0 0 0 0 0 0 0 0 0 10 5.5 4.50 5 6.5 2.5 9 5 7.5 5 3 5.5 2 6.5 5 6 1 3 3.4 10 17.5 10 18.7 6.25 4.4 Abbreviations: Cayman Mab, monoclonal mouse antibody (catalogue number 160112; Cayman Chemical, Ann Arbor, MI, USA); PG 27b, polyclonal rabbit antibody (cat. nr. PG 27b; Oxford Biomedical research, Oxford, Michigan, USA; IBL AP-ab, affinity-purified rabbit antibody (cat. nr. 18516; ImmunoBiological Laboratories (IBL) Co, LTD, Gunma, Japan); IBL Mab, monoclonal mouse antibody, clone 13H14 (cat. nr. 10211; IBL); Cayman AP-ab, affinity-purified polyclonal rabbit anti-murine antibody (cat.nr. 160126; Cayman Chemical), known to be reactive with human COX-2; NC Mab, monoclonal mouse antibody, clone 4H12 (cat. code NCLCOX-2; Novocastra Laboratories Ltd., Newcastle upon Tyne, UK); sc-7951, polyclonal rabbit antibody (cat. nr. sc-7951; Santa Cruz Biotechnology, Inc, Heidelberg, Germany); sc-1745, affinity-purified goat antibody (cat. nr. sc-1745; Santa Cruz Biotechnology); TEG, antigen retrieval in basic TEG buffer, pH 9.0; CIT, antigen retrieval in citrate buffer, pH 6.0; MW, antigen retrieval performed in microwave oven 3x5 min.; 90°C, antigen retrieval performed by incubation in preheated HIER buffer at 90°C for 30 min.; 60°C, antigen retrieval performed by incubation in preheated HIER buffer at 60°C for 14 hours; no HIER, staining performed without antigen retrieval. The quantitative estimates of COX-2 expression on the same cases implying no biological variations among the material tested with each antibody differ largely. The final cancer scores vary from positive to negative values the last meaning that cancer reactivity is less than background even in the cancer-optimal protocol. The quantitative differences are accompanied with qualitative differences. The staining of benign tissues also is dependant on the primary antibodies. There is no correlation between intensity of reactivity in those structures and cancer. The qualitative characteristics of the staining in benign tissues also differ in dependence from the primary antibody. Thus, the differences cannot be explained by different sensitivity only. The outcome of staining was influenced by HIER in comparison to no retrieval technique, by pH of HIER buffer and heating regimen during HIER. The dominant influencing factor for each cell type or morphologic structure by each primary antibody was identified. For Cayman MAb, PG 27b, sc-7951, sc-1745, either temperature regimen during HIER or pH of HIER buffer can be more important in accordance to the cell type (table). IBL AP-ab and IBL Mab are mostly influenced by pH. NC Mab is more influenced by pH, Cayman AP-ab by temperature. All scores are influenced by 2 groups of HIER factors, each predominating in accordance to the primary antibody. The variability of the most important HIER factor, as evident between antibodies and scores of cell type or morphologic structure, suggest no homogeneity of epitopes. GISTs: diagnostics and COX-2 expression as biological and technical variable For diagnostics of GIST, IHC panel consisting of antibodies against CD117, CD34, CD31, desmin, S-100 and cytokeratins AE1/AE3 was standardized by total test within the first stage. The optimal protocol included HIER in MW for 3x5 min. at maximum power in TEG buffer, pH 9.0, followed by 20 min. cooling in the same HIER buffer at RT. The incubation time was 60 min. at room temperature for CD117, desmin, S-100, Ki-67, cytokeratin AE1/AE3 and 30 min. for CD34 and CD31. The following dilutions were used: CD 117, 1:400; CD34, 1:1; CD31, 1:1; desmin, 1:200; S-100, 1:4000; Ki-67, 1:100; CK AE1/AE3, 1:200. Six of the IHC-confirmed GISTs were of spindle cell type, while 2 were epitheloid. Fascicular architecture, palisades, micro cystic degeneration and vacuole-like micro cysts were consistently present. One of the tumours showed weak diffuse positivity of desmin, cytokeratins AE1/AE3, S-100 that disappeared after biotin blocking or switch in visualisation systems from LSAB2 to EnVision TM+ (DakoCytomation). The positive interpretation of CD117 and CD34 was unequivocal due to widespread cytoplasmic (8/8) positivity in tumour cells and lack of background. Heterogeneous expression of desmin, S-100, CD31 and cytokeratin AE1/AE3 due to entrapped benign tissue was observed. Five of eight GISTs had entrapped desmin-positive benign smooth muscle - the muscular layer of vascular wall (4/8) and/or fascicles of the lamina muscularis propria (3/8). The presence of heterologous S-100 positive elements was found in 5/8 cases or 62.5%: tumourinfiltrating activated macrophages (4/8) or entrapped nerve fibres (4/8). Endothelial expression of CD31 was consistent. In all cases, the described elements could be recognised by the morphological structure, sharp contrast with tumour cells, and generally smooth outline, if tissue structure was concerned. The tissues from morphologically intact areas of the gastric wall were consistently positive for all of the investigated antigens. However, the reactivity in all cases by all antibodies was limited to specific cells or tissue structures. GDI 17 was expressed in lamina propria and submucosal mast cells (8/8). The predominant pattern of mast cell reactivity was strong membranous, or weak cytoplasmic with strong membranous accentuation, rarely cytoplasmic. The Cajal cells in intermuscular nerve plexus also were invariably CD117 positive but few. CD34 reactivity was consistent in the endothelium of blood vessels and lymphatics, perivascular and perineural fibroblasts. CD31 stained the endothelial lining of blood vessels. S-100 was strongly positive in activated macrophages and nerve fibres (8/8). Desmin was expressed in lamina muscularis propria, lamina muscularis mucosae and muscular layer of the vascular wall. In 5/8 cases splitting of lamina muscularis mucosae was present, leading to disorganised desmin-positive fascicles of smooth muscle within the mucosa. Ki-67 nuclear expression was invariably present in the proliferative zone of epithelium, lymphoid follicles and scattered stromal cells. Cytokeratin AE1/AE3 was expressed in surface and glandular epithelium. Six GISTs were selected for technological and biomedical investigation of COX-2 protein. Four of the tumours were of spindle cell type, while 2 were epitheloid. The results were highly dependant on the primary antibody. The summary tumour score was highest for sc-1745, reaching 19.7. The summary tumour score for Cayman Mab was high as well, reaching 14.3. In contrast, the summary tumour score for sc-7951 was 3.6, and for PG 27b - 1.2. The data were in parallel with the number of tumours showing at least moderate (grade 2) general reactivity: 6/6 for sc-1745 and 5/6 for Cayman Mab, but none if tested by other 2 primary anti-COX-2 antibodies. The total background score was 1.0 for the Cayman Mab, 0 for PG 27b, 2.0 for sc-7951 and 1.0 for sc-1745. Cayman Mab showed the highest final tumour score, followed by sc1745. Thus, Cayman Mab has the best specifity characteristics. The calculations are in accordance with the observation that Cayman Mab showed the most consistent staining pattern with large cytoplasmic granules and invariably negative nuclei. The general quality of PG 27b IHC was superior as reflected by characteristic supranuclear dot pattern in colonic epithelium in control slides. However, the staining in GIST cells was focal, weak, finely granular cytoplasmic. Sc-7951 had a trend to general background due to consistent intense unspecific cross-reactivity with a plasma component. The reactivity was not abolished by qualitative peroxidase block and was not present in red blood cells. The myxoid areas and microcysts showed the highest level of background. The reactivity in the tumour cells was finely granular cytoplasmic. Sc-1745 had a trend to general background as well. The reactivity pattern was diffuse cytoplasmic. There was no correlation between the location of tumour, predominant pattern (epitheloid versus spindle cell), extent of oedema and specific COX-2 reactivity with any of anti-COX-2. The reactivity in the mitotically most active areas was not different from inactive ones. Palisades did not differ in staining intensity or pattern. There was no correlation and no colocalisation between the expression of COX-2 and CD117, CD34, desmin, S-100 or cytokeratin. Immunohistochemical expression of COX-2 protein in Barrett's oesophagus 198 blocks containing 668 biopsies coded as oesophageal were retrieved and analysed. After Alcian blue-PAS stain, 80 blocks containing 309 biopsies of BE, defined as IM adjacent to squamous epithelium, were identified. Another 27 blocks corresponding to 103 biopsies contained CIM. In total, 412 biopsies representing oesophageal or cardiac IM were identified. Analysing the informativity of Alcian blue-PAS, pH 2.6 stain (AB-PAS), the following data were obtained. The AB-PAS prevented hyperdiagnostics of IM in 11/482 or 2.3% of biopsies and hypodiagnostics in 44/482 or 9.1% of biopsies. In HEstained slides, magnification 40 times was necessary to find and identify (within the frames of method informativity) goblet cells, the mainstay of the diagnosis of intestinal metaplasia, in 8.7% of cases, magnification 100 times - in 65.4%, 400 times - in 25.9% of cases. In contrast, in AB-PAS stained slides, goblet cells were definitively identified and differentiated under magnification 40 times in 65.4% of cases, under magnification 100 times in 34.6% of cases. The mean time for diagnosing IM on HE stained slides was 47.5 sec (median 39 sec, mode 35 sec, range 183 sec: 14 sec. - 197 sec, standard deviation 29.1 sec, standard error 2.6 sec). The mean time for diagnosing IM in AB-PAS stained serial sections of the same tissue blocks was 24.8 sec. (median 22 sec, mode 23 sec, range 108 sec: 4 sec. - 112 sec, standard deviation 14.1 sec, standard error 1.3 sec). COX-2 IHC was performed on 102 blocks of BE and CIM. In 25 cases (24.5%), no COX-2 expression in IM metaplasia was found. In the remaining 75.5% of intestinal metaplasia cases, focal granular cytoplasmic COX-2 protein expression was observed, mostly in the deepest proliferating metaplastic epithelium. The positive scores below 1 were observed in 20 cases (23.5%), between 1 and 2 in 43 cases (50.6%o), over 2 in 22 cases (259%). No nuclear reactivity was observed. There was trend to diminishing values in the biopsies from the earlier years, and statistically significant (p=0.039<0.05) difference between frequency of COX-2 completely negative IM cases in the time periods 1981-1987 and 1988-91, respectively. In squamous epithelium, focal specific granular cytoplasmic or paranuclear reactivity was observed in the basal layer. Peculiar unspecific immunoreactivity in the upper layers of the squamous epithelium coinciding with PAS-negative foci of swollen cells was frequent. Plasma cells were definitely identified in 55 immunoslides. In 21 case (38.2%) plasma cells showed focal weak (gradel) membranous reactivity. In 5 cases (9.1%) plasma cells showed consistent weak reactivity, in 2 cases (3.6%) - moderately intense reactivity. Membranous type of expression was consistent. Plasma cells were negative in 27 cases or 49.1%. The mean reactivity of plasma cell was 0.35 in blocks from 1981 - 1991 but 2.16 in blocks from 2002 - 2003. The macrophage and fibroblast reactivity in the erosions and ulcers was only partially present in comparison with recent blocks. 21 erosions were identified in the study group blocks from 1981 - 1991. 4 (19.0%) erosions were COX-2 negative, 6 showed COX-2 expression in rare cells only. COX-2 reactive fibroblasts were found in 5 erosions, being the dominant COX-2 positive cell type in 1 case. The intensity of fibroblast reactivity was 3 in 4/5 and 4 in 1/5 cases. Cytoplasmic reactivity was observed in fibroblasts. Macrophages were reactive in 16 cases, in 4 of those together with fibroblasts. In 6 cases only rare COX-2 expressing macrophages were observed. COX-2 expression in macrophages was cytoplasmic in 15, membranous in 1 case. The intensity was of grade 1 in 2 cases, grade 2 in 6 cases, grade 3 in 7 erosions and grade 4 in 1 case. In contrast, in recent blocks (2002 - 2003) consistent intense reactivity of macrophages and fibroblasts was demonstrated. COX-2 expressing macrophages in lamina propria were identified with certainty in 79 cases. In 58 cases the COX-2 expression was membranous, in 9 cases cytoplasmic and in 12 cases subpopulations showing membranous and cytoplasmic type of expression were identified. The decrease of COX-2 protein expression in macrophages along with the aging of blocks within the period 1981-1991 and over longer time period was found to be linear function of time. The changes of the COX-2 scores in IM and squamous epithelium in relation to the aging of blocks were demonstrable. The weak trend towards correlation of COX-2 expression in different cell types can be attributed to similar influence of the aging changes. Endothelial reactivity was analysed in distended capillaries that were identified with certainty in the lamina propria or submucosa. Endothelium was mostly negative. Among 48 cases, focal weak endothelial reactivity was observed in 2 cases (4.2%). The smooth muscle fibres of lamina muscularis mucosae or within lamina propria were included in 30 immunoassayed cases. Among these, smooth muscle fibres were negative in 5 cases (16.7 %), but showed focal weak reactivity in 21 case (70 %), consistent weak reactivity in 4 cases (13.3 %). The characteristic reactivity was in the form of tiny cytoplasmic granules. Immunohistochemical expression of COX-2 protein in oesophageal and gastric carcinoma In blocks from 1981-1990, the reactivity of adenocarcinomas, grade 2-3, was highly uneven. Although the intensity of COX-2 immunopositivity in a single positive cell was not less than moderate, the percentage of reactive cells was estimated to be from 10% to 100%. The total cancer score ranged from 0.2 to 3 degrees (mean cancer score, 0.9 degrees). The average reactivity of grade 3 adenocarcinomas was 1.44 degrees. No COX-2 expression was found in signet cell cancers. The average reactivity of high grade dysplasia was 2.5 degrees. In blocks from 2002-2003, the same protocol of 1HC resulted in mean cancer score 3.84 and undifferentiated cancer score 2.13. The main difference between the immunostained sections of older and new blocks was the distribution of reactivity. Assuming that loss of immunoreactivity due to aging is not dependant on the grade of cancer, the COX-2 expression was found to be highest in the early stages of malignant process and lower in high-grade cancers. DISCUSSION Technology of immunohistochemistry IHC is a sensitive and specific method that allows determining the presence or absence of a particular molecule in a specific cell or tissue structure that can be identified visually. However, as the technology is aimed at recognition of a specific structure by such a sensitive process as the epitope-antibody interaction is, tissue fixation, processing (Werner et al., 2000) and other stages of the routine laboratory work largely influence it. Most of these phases are not unified yet; therefore standardization has become the mainstay of immunohistochemical investigation in research and diagnostics (O'Leary, 2001; Pileri et al., 1997). The application of each reagent necessitates the use of total test procedure, testing each antibody at several concentrations and several incubation times. If other technological variations are possible, each of those must be checked for all other variables. Although it might seem time consuming, the procedure can reveal major technology-based differences in results (Chan, 1998). By total test an optimal protocol for each from 48 antigen was found that results in optimal signal-to-noise ratio finally leading to specific procedure, cost-effectiveness and easily analysable results thus even saving time. IHC technologies for visualisation of 29 antigens were approved by the Agency of Health Statistics and Medical Technologies as novel medical technologies in Latvia. Thus, total test is scientifically and experimentally justified way to start a new technology. The optimal staining conditions were found to be different from the recommended for 91.6% of antigens. For 75.9 % of concentrated antibodies, the optimal dilution was found to be 1.25 - 10 times greater than recommended, due to more effective antigen retrieval in basic buffer and slightly increased incubation time. The increased dilutions of the primary antibody resulted in qualitatively better visualisation at lower regular expenses. The economic effect was 4.67 - 141.69 LVS per slide (mean 51.7 LVS per slide; standard deviation 39.28 LVS per slide). For all but 1 antibodies, the economic effect was at least equal to the residual expenses or even exceeds those, thus saving more than 50% of the IHC budget for primary antibodies. Indeed, the total test results in a rare, still scientifically justified combination of higher quality and higher cost-effectiveness and provides possibility to introduce up-to-dated economic thinking into the best traditions of evidence-based medicine. Informativity of immunohistochemistry A number of studies have substantiated the informativity of IHC (Taylor, 2000). In an early study of more than 100 anaplastic tumours, the initial, He-based diagnosis of carcinoma or lymphoma was revised in approximately 50% of cases following basic 1HC. In a study of 200 consecutive cases, it was concluded that IHC contributed to the diagnosis in almost 50% and was confirmatory in the remainder. In analysis of 557 poorly differentiated round cell or spindle cell tumours that could not be diagnosed on the basis of HE, IHC provided a definitive diagnosis in 70% of the former and 92% of the latter (Taylor, 2000). Our data are in agreement with the conclusion that IHC is necessary and provides irreplaceable information. 1HC was necessary to confirm the diagnosis in 18.2% cases and mandatory in 51.5% (17/33) cases of primary pleural and chest wall tumours, including all pleural neoplasms and tumours presenting with small blue cell pattern. Thus, randomly selected field of pathology showed an important role of IHC as a general diagnostic technology. The most common modus operandi is to select stains from a panel that have proven to be of value in a particular diagnostic area. The other approach would be to use an algorithm with sequential panels of selected stains that introduces logic into the process but may compromise the turnaround time (Taylor, 2000). The second approach is tested in the Immunohistological laboratory, P.Stradin's Clinical university hospital at 2001-2002. The prerequisite for its functional behaviour in terms of reasonable turnover time is the presence of highly motivated staff that is able to perform stain and evaluation of specimens, proceeding immediately to the next step. Such a degree of motivation seems to be dependant either on personal idealism or high salary. The first is a qualitative factor that is not liable to guaranteed everyday use. The last is not possible in the present economic situation and seems reasonable in large laboratory with general 24-hour-working process as the logical input making diagnostic process more scientific must withstand large economic impact in combination with questionable gain in diagnostic accuracy. There is an important ongoing shift in emphasis in the use of IHC from a primary focus on cell and tissue markers as an aid to the recognition and classification of tumours to the demonstration of cell products, receptors or oncogenes of possible prognostic value. The precision required for this latter approach places new and more exacting demands on our ability to perform IHC in a reproducible manner (Taylor, 2000). Immunohistochemical diagnostics of GIST The immunohistochemical analysis of gastric wall by the antibodies, included in the diagnostic panel of GISTs, revealed consistently positive normal cells and tissues. Awareness of these elements and their immunophenotype is mandatory in order to avoid false positive diagnosis of a mesenchymal neoplasm. On the basis of these results, a list of endogenous positive controls for GIST IHC can be recommended, namely, mast cells for CD117, endothelium for CD31 and CD34, smooth muscle for desmin, macrophages or nerves for S-100. Sampling tumour tissue together with the overlying mucosa or adjacent tissue can be recommended on the basis of the presented results. The presence of endogenous controls will exclude the necessity to use positive control slide with beneficial economic consequences. According to the literature, desmin expression in true GISTs is uncommon (1-2% of cases) and limited to small foci (Fletcher el al., 2002). The obtained data are analogous, no true desmin reactivity was found in the cells of the analysed GISTs. However, 2 possible sources of diagnostic difficulties were found. The first is related to the presence of endogenous biotin, which was found in 1/8 of the analysed tumours. The clue to the identification of that problem is presence of diffuse weak reactivity with most of antibodies and disappearance of that reactivity with either biotin blocking or switch to biotin-prone visualisation technologies such as polymeric system EnVision +. Another possible source of overestimation of desmin expression is wrong identification of entrapped normal smooth muscle that can be part of vascular wall or lamina muscularis propria. It has to be noted that vascular wall can be partially deformed or destroyed by the invading tumour. However, even in this case, the benign nuclear morphology that contrast with tumour cells, and the sharp contrast between tumour cells and the fascicles of smooth muscle allow the correct identification. Although lamina muscularis mucosae could be entrapped in a tumour that invades mucosa, this was not observed, possibly because of the small volume of this tissue structure. Around 5% of GISTs express S-100 protein. Again, high endogenous biotin content or wrong identification of the positive elements can result in false positive estimation. The most common S-100 positive elements within a GIST were nerve fibres and activated macrophages. It has to be underlined that careful standardization is of utmost importance for S-100 in order to reach the described specifity. Presence of CD31 in endothelial cells is a consistent phenomenon. If the reactivity is not present in the tumour cells, there is no proof of vascular neoplasm. Similarly, CD34 is invariably expressed in endothelium, perivascular fibroblasts and perineural fibroblast-type cells. Such reactivity does not suggest the diagnosis of GIST. Finally, as shown by our results and literature data, CD117 is expressed not only in other neoplasms, but also in normal tissue elements. Mast cells and Cajal cells are typically positive in the wall of gastrointestinal organs. Such reactivity, limited to normal cells and structures, must not be interpreted as an evidence of GIST. It is recommended to pay attention to the location of positive reaction and careful identification of any positive tissue structure as already suggested by Seidal et al., 2001. The immunohistochemical reaction must not be characterized by the bare terms "positive" or "negative". Instead, the specific location of the concerned reactivity must be recorded and analysed. If this rule is observed, IHC is highly reliable tool in GIST diagnosis. Expression of cyclooxygenasc-2 protein COX-2 has become an object of intense investigations as it may be involved in important steps of carcinogenesis, may be a target of cancer prevention or treatment, or a biomarker of cancer risk. In order to obtain analysable data, standardized and comparable technologies are necessary. COX-2 might be up-regulated in different types of cells; therefore IHC has a strong preference over methods that require analysis of homogenized whole tissue as it demonstrates clearly the cells and structures responsible for COX-2 over expression. The presented data also justify independent COX-2 expression in different tissues, as metaplastic intestinal-type epithelium, squamous epithelium and macrophages. This emphasizes the necessity to identify the COX-2 expressing cell populations in each case. The main problem in COX-2 IHC has been the huge qualitative and quantitative differences in the published data. Although methodological diversity has been suspected as a cause of widely divergent results, a limited number of studies have been devoted to this question (Garewal et al., 2003; Shi et al., 2002; Saukkonen et al., 2001). In the present work, the staining patterns and intensity of 8 primary anti-COX2 antibodies upon 7 protocols of antigen retrieval were analysed in accordance to total test principle. The tests were performed on serial sections of the same 5 cases. Thus variables as different fixation, processing, selection bias were excluded. The reactivity of cancers was strongly dependent on the primary antibody. The choice of antigen retrieval influenced the sensitivity. Although this may be partially compensated by different scoring systems and cut-off values, this might also change the percentage of estimated-as-positive cases in qualitative studies and significantly influence the analysis of COX-2 expression at levels that are close to the sensitivity threshold. The optimal HIER that provided highest cancer reactivity with less background was different for each antibody: microwave treatment in TEG for Cayman Mab, IBL AP-ab and Mab. HIER at 90°C - 30 min. in TEG ensured effective visualisation with PG 27b and sc-1745, relatively optimal with sc-7951 and Cayman AP-ab. It was effective for Novocastra Mab, along with HIER in TEG at 60°C for 12 hours. HIER in CIT was consistently less sensitive than HIER in TEG. It may give first impression of higher specifity due to more limited reactivity. After identification of the optimal antigen retrieval and dilution for each primary antibody, the efficiency of cancer staining still differed significantly. After correction of the cancer score for the background and nuclear reactivity, the highest values of resulting cancer score were obtained for Cayman Mab, followed by sc-1745, IBL APab and PG 27b. PG 27b was remarkable for very low background. Sc-1745 showed high background score that included also nuclear reactivity; however, the resulting value was high due to intensive cancer reactivity. The resulting scores of IBL AP-ab and Novocastra Mab were close to PG 27b. However, these antibodies showed more background, making the work and evaluation more difficult. The resulting scores for Cayman AP-ab and sc-7951 were low, but for IBL Mab - negative. The last value reflected the lack of epithelial reactivity with IBL Mab. The influence of the primary antibody upon staining in the undifferentiated cancer component was analysed, comparing the staining in this component to that in adenocarcinomatous complexes. Diffuse cancers showed the highest relative reactivity with Cayman Mab, sc-7951, Cayman AP-ab, IBL AP-ab. PG 27b showed the weakest reactivity, even complete negativity of undifferentiated component and single-invasive cells if the protocol was not the most sensitive. Novocastra Mab also relatively weakly reacted with the undifferentiated cancer. The absolute reactivity in diffuse cancers was the highest with Cayman Mab due to overall high sensitivity. Signet ring cells also reacted differently with different primary anti-COX-2 antibodies. This cell type was completely negative with sc-7951, IBL AP-ab, and IBL Mab antibodies and showed no specific reaction with PG 27b. Cayman antibodies showed occasional weak to moderate membranous reaction with TEG MW, TEG 90"C and CIT 90°C. Novocastra Mab showed such membranous reaction only after HIER in TEG 90°C that was the most sensitive protocol for this antibody. In contrast, sc-1745 reacted with signet ring cells after any HIER, showing moderately intense reaction in the peripheral rim of cytoplasm but not mucus. Our findings that confirm COX-2 expression in diffuse cancers by different antibodies are in accordance with published data. COX-2 presence in diffuse cancers is shown by mRNA and cell culture studies. COX-2 mRNA was expressed both by intestinal and diffuse type adenocarcinomas, analyzing by Northern blot hybridization and reverse transcription PCR (Ristimaki et al., 1997). COX mRNA was found by PCR in 4 of five gastric cell lines. The positive cell lines were from intestinal (2) and diffuse (2) cancer (Uefuji et al., 2001). No correlation was found between COX-2 mRNA level and histological type - intestinal vs. diffuse (Ohno et al., 2001). It has to be concluded that COX-2 expression in high-grade cancers is possible, but not all primary anti-COX-2 antibodies will identify the reactivity even if the protein is present and would be detected by other primary antibodies. Thus, choice of primary antibody is the critical decision in studies of relation between COX-2 expression and tumour grade. This choice will also influence studies that concern COX-2 expression as prognostic factor, as prognosis is known to be influenced by tumour grade. The fact that different primary antibodies have different affinity to high-grade component, does not exclude possibility of biologically different level of COX-2 expression. In fact, our findings would strongly support those studies that have found such difference between cancers by an antibody that is reactive with undifferentiated cancers. This is shown by Saukkonen et al. Using Cayman Mab, COX-2 positivity after scoring was detected in 58% of the intestinal type gastric adenocarcinomas and 6% of diffuse type tumours (Saukkonen et al., 2001). Also, by Cayman Mab positive reaction occurred more frequently in intestinal (77.9%) than in diffuse (46.2%) or mixed (45.5%) types of cancer (Joo et al, 2002). However, use of the same antibody has yielded also opposite results. IHC by Cayman Mab overnight at 4°C without HIER resulted in cytoplasmic and nuclear membrane staining in cancer cells (72.5%, if positivity defined as relevant staining in more than 50% of tumour cells) without correlation between COX-2 expression and location of the tumour (cardia vs. gastric remnant vs. corpus and antrum) or histopathological grading (Kawabe et al., J Surg Oncol, 2002). These findings might be attributed to omission of HIER as our data show less difference in the reactivities of adenocarcinomatous and undifferentiated components in such conditions in contrast to TEG MW protocol. As already shown, detailed knowledge of COX-2 IHC technology is necessary in order to avoid estimating technology-based differences as biological differences. Not only was the intensity, also the pattern of reactivity was antibody-dependent. The Cayman Mab showed characteristic granular cytoplasmic staining with moderately large granules and peripheral attenuation. The most characteristic pattern of PG 27b in adenocarcinoma was supranuclear cleaved dot. In squamous cell cancer this antibody was reacting differently upon the same antigen retrieval and immunostaining conditions showing highly heterogeneous diffuse cytoplasmic reactivity. IBL AP-ab stained cancer diffusely cytoplasmatically, in combination with marked positivity in a subset of mitoses. IBL Mab was almost unreactive with cancer cells. Cayman AP-ab showed combination of cytoplasmic, apical and membranous reactivity. Novocastra Mab was characterized by diffuse cytoplasmic staining and small foci of peripheral attenuation reminiscent of Cayman Mab. Sc-7951 showed highly heterogeneous diffuse cytoplasmic staining. Sc-1745 was characterized by diffuse cytoplasmic reactivity and trend to membranous enhancement. These differences demonstrate that the epitopes recognised by different antibodies are located in different ultrastructural units. Two of the investigated antibodies were directed against amino terminus of human COX-2.: Novocastra Mab and sc-7951. Both of them showed diffuse cytoplasmic stain. Although diffuse cytoplasmic reactivity was a part of the typical pattern for IBL AP-ab, Cayman AP-ab and sc-1745, it as the only pattern was limited to abs against amino terminus. As it is described further, those antibodies had in common also the lack of reactivity in erosions. The sensitivity in cancer staining was higher for Novocastra Mab, but heterogeneity - for sc-7951. The antibodies against carboxyl terminus, however, show large variability in patterns. It might be hypothesized that COX-2 antibodies are produced mainly against synthetic peptides therefore the real tertiary or quaternary structure of COX-2 molecule interferes with binding to some epitopes. Another possible explanation for the different results obtained by carboxy-terminus detecting COX-2 antibodies is based of COX-3 hypothesis. In 1999, NSAID-induced (sic!) COX activity was described with different characteristics. The localization of NSAID-induced COX was switched from nuclear and microsomal membranes to the cytoplasm. The NSAID-induced COX protein was totally reactive with anti-COX-2 (Merck Frosst Labs, Pointe Claire, Canada) in Western blot. The COX-2b hypothesis stating that COX-3 is a variant of COX-2 that included the COX-2 specific carboxyl terminus was based on these findings (Simmons el al., 1999). In 2002, a sequence for the proposed COX-3 was published that could be attributed to a clone of the COX-1 gene with alternative splicing, resulting in the retention of intron-1 in the mature mRNA. Translation results in a COX isozyme with an N terminal extension due to intron 1 and the retained signal peptide. The authors describe 65 kDa protein from human aorta as COX-3 and 53 kDa proteins as PCOX-la. PCOX-1 is identical to COX-3 except for a deletion in a catalytic domain of the protein corresponding to exons 5-8. It lacked detectable COX activity. A 50kDa protein was detected only by COX-1 monoclonal antibody and was named PCOX-1b (Chandrasekharan et al., 2002). If both results describe the same molecule, it is COX variant with N-terminal extension precluding the reactivity with N-terminal recognizing anti-COX-2 and retained reactivity with some anti-COX-2. This may interfere with COX-2 IHC if some anti-COX-2 recognize it and include into the result but others do not recognize. Specific elements can be better highlighted with particular anti-COX-2 antibodies. These have to be analysed separately. Cayman Mab reacted strongly with parietal cells, staining cytoplasm and especially canalicular system. Occasional weak reactivity with PG 27b was observed; the pattern was dot-like, reminiscent either of the typical supranuclear dotted line or fragmentary staining of canalicular system as the last was highlighted by Cayman Mab in the form of large dots and rings. IBL AP-ab resulted in finely granular cytoplasmatic stain with accentuation toward the upper part of gastric glands. IBL Mab gave negative results. Cayman AP-ab showed trend towards the same pattern as with Cayman's Mab, but it was less clearly evident. The gradient with Cayman AP-ab was reverse as with IBL AP-ab - the staining was stronger in those parietal cell situated deeply in gastric glands. Novocastra Mab reacted with parietal cells as well. Sc-7951 stained parietal cell weakly and there was marked variability between cases. Moderate cytoplasmic reactivity and dot-and-ring-like structures similarly to the picture obtained by Cayman Mab were observed occasionally, in spite to low sensitivity of this antibody to COX-2 expression in cancers. Sc-1745 reacted with parietal cells weakly, in the level of background. Thus, 5/8 antibodies reacted with parietal cells and 3 of those showed the same pattern - moderate to intense cytoplasmic reactivity with strong accentuation of canalicular system. 2 of those antibodies were monoclonal, directed towards carboxyl terminus and amino terminus of COX-2 respectively. The results might suggest true COX-2 presence in parietal cells. This is in accordance with findings of McCarthy et al., who described consistent strong parietal cell reactivity in Helicobacter pylori infected men by IHC, using Cayman's polyclonal rabbit anti-human IgG antibody at dilution 1:100 incubating overnight at 4°C, without HIER (McCarthy, 1999). In another study, using rabbit polyclonal anti-human-COX-2 (ImmunoBiological Laboratories, Fujioka, Japan) at 4°C overnight after HIER at 90°C for 9 min., sporadic staining was observed in normal fundic glandular cells in all cases. The immunostaining in normal mucosa was in accordance with the magnitude of the results of an immunoblot (Uefuji et.al., 1998). A possibility of cross-reaction might be considered. The previous studies have analysed mostly a possibility of cross-reaction with COX-1. McCarthy et al. observed no cross-reaction with COX-1 in Western blot, and mentioned that no cross-reactivity with sheep seminal vesicle COX-1 was found by the manufacturer (McCarthy et al., 1999). Strong parietal cell immunoreactivity for COX-2 along with COX-1 was found by Jackson et al. COX-2 was detected by polyclonal anti-human antibody, Cayman Chemical (catalogue number 160107) after HIER in citrate buffer, 102°C-12 min. However, specifity of IHC was confirmed by antigen absorption, and COX-2 and COX-1 expression was confirmed by Western blot, thus suggesting rather presence of both isoforms than cross-reactivity (Jackson et al., 2000). These data do not allow ascribing all the detected COX immunoreactivity in parietal cells to COX-1. The canalicular system as the target of COX-2 detecting antibodies was consistent with the findings in immunoelectron microscopy. COX-1 and COX-2 in gastric parietal cells were found in smooth endoplasmic reticulum and canalicular membranes but not in the nucleus or interior of cytoplasmic organelles such as mitochondria (Jackson et al., 2000). There are also seemingly opposite results. In Helicobacter pylori infected tissues, antrum contained more COX-2 than body by mRNA analysis and Western blot. The incidence and severity of acute and chronic inflammation was not significantly increased in antrum compared with corpus (Fu et al., 1999). Functional importance of COX-2 expression in parietal cells can be hypothesised, both in normal and pathological processes. Pausawasdi et al. have found that isolated "resting" canine gastric parietal cells in culture expressed low levels of COX-2 mRNA (by Northern blot) and protein (by Western blot, using polyclonal anti-COX-2 antibody, Cayman Chemical). Stimulation with carbachol but not gastrin, histamine and combinations of those induced marked expression of both COX-2 mRNA and protein. The induction of COX-2 was mediated through muscarinic receptor M3 activating Ca2+, NF-kappaB and protein kinase C dependent pathway with partial involvement of p38 kinase. This might be relevant to clinical processes as prostaglandins not only promote gastrointestinal mucosal defence, but also inhibit gastric acid secretion. Cholinergic neurotransmitters are released in the inflamed gastrointestinal mucosa, so M3-dependent induction of COX-2 gene expression in parietal cells is possible in inflammation. Parietal cells are capable to produce growth factors, in particular, transforming growth factor alpha, so these cells might be an important mechanism for the paracrine regulation of gastric epithelial cell growth and differentiation (Pausawasdi et al., 2002). Loogna at al. described strong cytoplasmic expression of COX-2 in the lower portion of rat glandular corpus epithelium by IHC, using polyclonal murine antiCOX-2 antibody, Cayman Chemical. COX-2 expression in corpus epithelium was found in control animals, but it was increased in N-methyl-N-nitro-Nnitrosoguanidine treated animals and in the group exposed to Helicobacter pylori and bile. Most of staining was found in the corpus, while preneoplastic changes occurred in the antrum. There was a correlation between the area of COX-2 expression in corpus and atrophy and goblet cell metaplasia in antrum (Loogna et al, 2002). Although the COX-2 expression may differ in different species (Kargman el al., 1996), these findings highlight a possible role of parietal cell COX-2 expression in carcinogenesis. In conclusion, positive IHC staining for COX-2 in gastric corpus is described by different methods. The work of Pausawasdi confirms this finding by showing that parietal cells are able to express high levels of COX-2 without morphological changes, upon M3 stimulation that is possible in inflamed stomach. Together with finding of Loogna that area of COX-2 expression in corpus correlates with the degree of atrophic and metaplastic changes in antrum, it is possible to speculate that parietal cells participate in precancerogenesis producing growth factors. However, the causal relationships in this process are not proved. Another independent finding partially contradicts this possibility by the fact that levels of COX-2 in gastric antrum is equal to that in corpus; in the absence of significant inflammatory or neoplastic processes limited to antrum (Fu et al., 1999). However, if all the reactivity demonstrated by Cayman Mab is true, such a "balance" may be achieved with strong COX-2 expression in parietal and chief cells in corpus, and moderate COX-2 expression in cells of mucosal immune system, stromal cells, metaplastic and dysplastic epithelium in antrum. There are several possibilities: 1) COX-2 is easily up-regulated in corpus and some antibodies are sufficiently sensitive to demonstrate this. 2) Some anti-COX2 antibodies exhibit cross-reaction with COX-1. McCarthy's, Saukkonen's and Cayman's data argue against this. This probability is not high. 3) Some antibodies show significant cross-reactivity with unidentified protein. This might be caused by choice of non-specific epitope as the immunogen. This probability also is not high as this reactivity is not limited to antibodies from the same source. 4) Cross reaction occurs with a member of so-called COX-3 group. The differences in staining pattern might be due to conformational changes in COX-2 molecule, e.g., PG 27 recognise COX-2 in "early stage of its life", in endoplasmic reticulum close to Golgi complex, but it does not recognise "old" COX-2 in parietal cells. Chief cells were markedly positive with Novocastra Mab and reactive with Cayman Mab in lower intensity as parietal cells, but mostly negative with Cayman AP-ab. There was no convincing reactivity with IBL AP-ab and Mab. If the most sensitive protocol was applied, PG 27b resulted in weak dot-like cytoplasmic granularity in the basal part of corpus glands. Occasional weak reactivity in basal part of corpus glands was found with sc-7951. The cells situated in deep part of corpus glands were apically positive with sc-1745. Thus, 2/8 antibodies demonstrate chief cell reactivity, another 2/8 show reactivity in the basal part of corpus glands that was difficult to localize to particular cell type. However, the location suggest chief cell as the COX-2 source in these cases. Chief cell reactivity might have the same causes and functional role as the COX-2 protein expression in parietal cells. Using HIER that resulted in the highest cancer score, foveolar epithelium showed characteristic reactivity with Cayman Mab. The pattern was basal cytoplasmic stain in foveolar proliferative zone without the supranuclear dotted line that was focally evident in intestinal metaplasia and/or dysplasia. The same trend to reactivity mainly in the proliferative zone was observed with IBL AP-ab, Cayman AP-ab and Novocastra Mab. Although a characteristic trait of sc-1745 was the diffuse, total reactivity in foveolar epithelium, trend to more intense stain in proliferative zone was noted after HIER in CIT. IBL Mab and sc-7951 showed different pattern: subset of positive endocrine-like cells in proliferative area on background of otherwise negative foveolar epithelium. This type of reactivity was remarkable for 2 peculiarities presence of epithelial reactivity with IBL Mab and higher efficiency of HIER in CIT MW than TEG MW for IBL Mab. A combination of 2 patterns was observed in the foveolar epithelium with PG 27b. The more common was diffuse reactivity with foveolar mucus that was variable between cases and HIER protocols. Another, rarer pattern was the focal presence of supranuclear dots in foveolar epithelium upon a sensitive protocol. It is interesting that foveolar reactivity independently of pattern was mostly present in the proliferative area (by 7/8 antibodies). The correlation between proliferation and COX-2 expression is described previously (Ohike and Morohoshi, 2001). So, the reactivity limited to the proliferative zone seems to be true. The reactivity of non-dysplastic surface epithelium with sc-1745 might be equalized to consistent expression in biopsy studies; this might signify a crossreactivity, or, less probably, consistent expression of COX-2. Two types of COX-2 immunoreactivity were identified in mucous glands. In contrast to the findings in foveolar epithelium, these patterns were not mutually exclusive. One of those patterns was focal cytoplasmic staining without nuclear and mucus reactivity, mostly evident in atrophic mucosa. Cayman Mab stained atrophic glands focally, moderately intensively. PG 27b generally did not react with mucous glandular epithelium. The characteristic supranuclear dot-like reactivity, however, was observed in atrophic epithelium beneath intestinal metaplasia. Most of protocols, namely, all TEG-based HIER protocols, HIER in CIT MW and staining without HIER resulted in focal cytoplasmic reactivity in the mucous glands with IBL AP-ab. Focal moderate cytoplasmic reaction with Novocastra Mab was evident in basal cytoplasm, except for the protocols without HIER or with slide incubation in CIT 60°C or in CIT MW when the reaction was weak, limited to small foci in 1/4 case. Atrophic mucous glands were positive with sc-1745. A subset of endocrine-like cells was highlighted by IBL AP-ab in the mucous glands, most effectively after HIER in MW. There was also a subset of small round intensively positive cells with sc-1745. IBL Mab did not stain mucous glands. Cayman AP-ab showed weak focal reactivity only after HIER in TEG MW (2/3), 90°C (3/3), 60°C (1/3), and protocol without HIER. Mucous glands were mostly negative with sc-7951: only 1/4 case showed sharply demarcated foci of weak reactivity if HIER in TEG, MW or 90°C was applied. The IHC COX-2 expression in mucous glands thus is dependant on primary antibody. The reactivity is weak and dependent also on the antigen retrieval. Focal COX-2 expression in mucous glands on the background of atrophic gastritis might be possible in the light of Correa's cascade. The nature of positively staining cell subpopulation is not clear; these differ from similar subpopulation in the foveolar proliferative zone by location and by antibodies that recognize these cells. COX-2 brightly positive subpopulation in foveolar proliferative zone is recognized by 1BL AP-ab and sc-7951, but the glandular subpopulation is demonstrated by IBL Mab and sc-1745. 6/8 of primary antibodies demonstrated focal COX-2 expression in intestinal metaplasia and dysplasia. Consistent negativity was found with IBL Mab that was in accordance with the lack of epithelial reactivity with this antibody. No reliable reactivity in dysplastic and metaplastic epithelium was observed with Cayman AP-ab, possibly due to lower sensitivity of this antibody in comparison to Cayman Mab, demonstrated both by lower cancer scores in our results and by the published data (Saukkonen et al., 2001). Focal sharply demarcated supranuclear and subnuclear basal cytoplasmic reactivity with Cayman Mab in IM and dysplasia occurred after HIER in MW. The reactivity of PG 27b with IM was most consistent after HIER in TEG 90°C. All other HIER protocols resulted in less positive area, less intensity and lower number of positive cases. The dot-like reactivity was most marked in the basal part of metaplastic glands. No mucus reactivity in IM was observed in contrast to foveolar epithelium. IM showed a combination of focal cytoplasmic reactivity and bright staining in a subgroup of endocrine-like cells with IBL AP-ab. These cells were best seen after low temperature HIER in TEG, less in TEG MW and low temperature HIER in CIT, but were not evident after HIER in CIT MW and staining without HIER. The cytoplasmic reactivity was best evident after HIER in TEG MW or staining without HIER and was absent after CIT 60°C. Dysplastic surface epithelium focally moderately intensively reacted after HIER in TEG MW and staining without HIER. IM and dysplasia was negative with sc-7951 in 1 case. In other 2 cases, there was focal weak reactivity in metaplastic that contrasted with the total negativity of foveolar epithelium. Within the study the recognition of weakly positive areas was facilitated by colocalisation of positive areas with more contrasting slides, obtained by use of other anti-COX-2 antibodies. In IM, cytoplasmic reactivity was observed in deeper parts of metaplastic glands that contained also a subpopulation of brighter positive round cells. The reactivity of dysplastic surface epithelium in 2/3 cases was limited to intercellular lines and paranuclear vacuoles, presumably serum leaks. Novocastra Mab stained IM focally. Although the intensity of reactivity in metaplastic epithelium was only slightly stronger after HIER in TEG 90°C in comparison with TEG 60°C and TEG MW, TEG 90°C resulted in sharply demarcated foci of reactivity in dysplastic surface epithelium. IM was totally positive with sc-1745. The positivity was equally intense in the basal and upper part of metaplastic glands and extended to dysplastic surface epithelium. The intensity was highest after HIER in TEG. Surface stained more intensively than deep part after HIER in TEG 60°C. A subpopulation of endocrine-like positive cells was present in the basal part of metaplastic glands after HIER in 90°C. Thus, contrasting subpopulations of COX-2 positive cells in 1M were recognized by IBL AP-ab sc7951, sc-1745. COX-2 expression in 1M and dysplasia has been described (Lim et al., 2000; Sung et al., 2000, van Roes et al., 2002) and pathogenetically is substantiated as IM and dysplasia arc parts of Correa cascade leading to cancers that are COX-2 positive at least in a subset. However, there was significant variability by different primary antibodies on the same tissue. The focal, sharply demarcated reactivity as seen with Cayman Mab, IBL AP-ab, sc-7951, Novocastra Mab and PG 27b seem more probable as the trend to total staining with sc-1745. The differences in the predominant location of COX-2 expression (basal with PG 27b, predominantly superficial with sc-1745 upon those protocols that recognize such gradient) again point to reactivity with different epitopes and possibility of cross-reactivity. Our data show that differences in the COX-2 expression in precancerous processes can be explained with technical factors only. Examples of such differences are studies by Lim et al. and van Rees et al. By IHC with Santa Cruz polyclonal goat antibody at dilution 1:50 overnight at 4°C after microwave treatment in citrate buffer, consistent positivity was found in IM and adenomatous epithelium (Lim et al., 2000). Using Cayman Mab at dilution 1 TOO at 4°C overnight after HIER in MW in CIT buffer 10 min., the results were: reactive epithelium 7% negative, 71% +, 21% ++; IM 70%+ and 30% ++; low-grade dysplasia 20%+, 30%++, 50+++; high-grade dysplasia 11% +, 33% ++ 55% +++. By RT-PCR, there were elevated COX-2 mRNA levels in IM-containing biopsies, if compared to paired non-metaplastic biopsies (van Rees et al., 2002). With Cayman Mab, squamous epithelium showed moderate reactivity in basal layer and weak perinuclear in prickle cell layer. In reactive epithelium, the positivity "raised" to suprabasal layer. Interestingly, the pattern was qualitatively different without HIER - inverted, with basal negativity. Reactivity of squamous epithelium was difficult to demonstrate with PG 27b: it was limited to most sensitive protocols and reactive areas. With IBL AP-ab antibody, basal layer stained weaker than prickle cell layer, and reactive areas stronger than remote epithelium. IBL Mab stained only parakeratosis weakly, after no HIER or TEG MW. The upper prickle layer and parakeratosis in reactive areas were intensively positive, if no HIER was applied. With Cayman AP-ab, basal layer and prickle cell layer were weakly positive after HIER in TEG MW. After low temperature HIER in TEG 90°C, basal layer showed moderate cytoplasmic positivity, but prickle cells - weak cytoplasmic reaction with slight perinuclear accentuation. If no HIER was applied, the basal layer was negative, but prickle cell layer in reactive areas showed weak granular cytoplasmic reactivity with perinuclear accentuation. Novocastra Mab after optimal HIER (TEG in 90°C or 60°C) stained intensively perinuclearly the basal and prickle cell layer, and suprabasal and prickle cell layer in reactive epithelium. In this case, no HIER resulted in areactivity of the squamous epithelium. Sc-7951 after the optimal HIER TEG 90°C resulted in weak to moderate membranous/cell border positivity in prickle cell layer and occasional weak perinuclear accentuation, but the basal layer was negative. With sc-1745, alter HIER in TEG MW, moderate to intense cytoplasmic reactivity was present in the basal layer with basal membrane accentuation. In CIT, the pattern was preserved; possibly due lo lower background, focal perinuclear positivity was discernible that might be confluent with the general background-like stain after TEG MW. After TEG 90°C, in addition to intense positivity in the basal layer weak to moderate paranuclear reactivity was also observed in the prickle cell layer. The epithelium adjacent lo cancer showed only weak expression - less intense than in the remote epithelium. HIER vs. no HIER changed not only intensity, but also the pattern of expression with Cayman Mab and AP-ab. Basal reactivity was acquired and dominated only after HIER. Basal layer showed higher COX-2 expression with Cayman Mab, Cayman APab, Novocastra Mab and sc-1745, but less - with IBL AP-Ab, IBL Mab and sc-7951. As expected from the diverse patterns in relation to technological changes, the literature data about COX-2 expression in squamous epithelium are controversial. COX-2 was weakly expressed the basal layer of the normal oesophageal mucosa by IHC using monoclonal antibody from Cayman Chemical with overnight incubation at 4°C. Results of IHC in general were confirmed by preabsorption and Western blot in selected cases (Kawabe et al., 2002). In human keratinocyte differentiation, COX-2 gene expression showed increasing intensity in the upper part of the epidermis with less expression in the basal layer (Leong et al., 1996). If COX-2 expression correlates with the proliferative activity, higher expression in basal layer and reactive areas might be expected. It is evident that great variety of COX-2 IHC staining patterns exists. The main emphasis is on illustration of the differences between the distribution of epitopes recognised by different antibodies. COX-2 expression in macrophage- and fibroblast-like cells in erosions is a welldescribed phenomenon (Saukkonen et al, 2001; Jackson et al, 2000; Han et al, 2003). In our experience, this reactivity was not manifested by all primary antibodies. Cayman Mab, PG 27b, IBL AP-ab, IBL Mab, Cayman AP-ab, sc-1745 were reactive. The erosions were negative with Novocastra Mab and sc-7951, both directed against amino terminus of COX-2. The reactivity, when present, was intense, therefore with some antibodies, e.g., Cayman Mab, it was almost independent of the type of antigen retrieval. With others, e.g., sc-1745, the general rule of less positivity after HIER in CIT and staining without HIER was followed. For sc-1745 and PG 27b, the score were mainly influenced by pH. Although results by Cayman AP-ab and IBL abs were also influenced by pH, there was also effect of temperature saturation, namely loss of reactivity at low temperature HIER for Cayman AP-ab and saturation at TEG MW or 60°C for IBL AP-ab and MAb. The relative input sequence of factors that influence the degree of erosion-related COX-2 reactivity is only partially the same as for cancer reactivity degree. Reactivity of macrophages and fibroblastss apart from erosions was found with most antibodies, although in different degree. PG 27b and IBL Mab were almost unreactive. The intensity of COX-2 expression in macrophages and fibroblasts was paralleling each other, but not correlating with the reactivity in erosions. The last finding is demonstrated brightly by PG 27b and 1BL Mab that show marked reactivity in erosions. The COX-2 score in macrophages was mostly influenced by the choice of the primary antibody and by pi 1 of 1 HER buffer, but less - by temperature regimen of HIER. The published data arc controversial, again. In Helicobacter pylori infected men, spotty positivity in macrophages in the germinal centres was demonstrated by Cayman polyclonal rabbit anti-human IgG antibody at dilution 1:100 incubating overnight at 4"C, without 1 HER (McCarthy et al., 1999). Occasional macrophage and myofibroblast reactivity for COX-2 was detected by polyclonal anti-human antibody (catalogue number 160107, Cayman Chemical) after HIER in citrate buffer, 102°C-12 min. (Jackson et al., 2000). By Cayman Mab overnight at 4°C without HIER, inflammatory mononuclear cells, fibroblasts occasionally stained (Kawabe et al., J Surg Oncol, 2002). In contrast, by rabbit polyclonal anti-human-COX-2 (Immunobiological Laboratories, Fujioka, Japan) at 4°C overnight after HIER at 90°C for 9 min., no expression of COX-2 was observed in inflammatory mononuclear cells or fibroblasts (Uefuji et al, 1998). Also, the tumour stroma outside the areas of epithelial injury was found to be negative, using Cayman Mab at dilution 1:50 overnight after HIER in citrate buffer, MW, 2.5 min in 800 W and 15 min in 440 W (Saukkonen et al., 2001). COX-2 expression in plasma cells was found with all antibodies, suggesting true COX-2 presence. In literature, spotty positivity in lamina propria plasma cells of Helicobacter pylori infected men was described (McCarthy et al., 1999). Endothelial reactivity with Cayman Mab was slight and focal, revealed only by HIER in TEG MW or at 90°C. Endothelium was unreactive with PG 27b. The reactivity with IBL AP-ab was markedly dependant on antigen retrieval -endothelium was consistently weakly positive after TEG MW, negative after CIT MW. Interestingly, staining without HIER resulted in dispersed results, including no endothelial reactivity in 2/5 cases and moderate reaction in another 2/5 cases. With IBL Mab, endothelium was mostly negative, with the exception of weak positivity in 1/5 cases after HIER in TEG MW and in the protocol without HIER (the same protocols as for neural and muscular positivity). The endothelial reactivity was the highest with Cayman AP-ab. It was present with Novocastra Mab and sc-1745: mostly after TEG 90°C and TEG 60°C, less after TEG MW. Sc-7951 reacted focally weakly. At least focal endothelial reactivity is present with most of antibodies and is in accordance with the following literature data. Under normal conditions, cultured human gastric endothelial cells expressed COX-1 and low levels of COX-2 by Western blot and reverse transcriptase PCR. COX-2 expression was induced in angiogenesis models by stimulating endothelial cell with phorbol ester or plating them on basement membrane matrix (Hull et al., 1999). Increased COX-2 immunostaining in endothelial cells was seen at the rim of ulcers (Jackson et al., 2000). No COX-2 was detected in the existing vasculature in normal tissues, but moderate to intense COX-2 expression was consistently observed in the blood vessels in all cancers studied and in the endothelium overlying and immediately adjacent to the fibrofatty lesion, if studied by IHC, and verified by Western blot and quantitative RT-PCR (Koki et al., 2002). Thus, according to literature data, unstimulated endothelium in preformed blood vessels or in normal culture conditions expresses predominantly COX-1 (Hull et al., 1999). In contrast, stimulated endothelial cells in culture (Hull et al., 1999), rim of ulcers (Jackson el al., 2000), adjacent to atherosclerotic fibro fatty lesion or in tumour stroma (Koki el al., 2002) over express COX-2, as demonstrated by Western blot, reverse transcriptase polymerase chain reaction and 1HC. Although focal COX-2 expression in endothelial cells seems to be biological phenomenon, consistent positivity might signify a cross reactivity, possibly with COX-1. The reactivity in smooth muscle was variable with different antibodies. The literature data are controversial, again. In the present work very low reactivity of smooth muscle with Cayman Mab was found, except if staining was performed without HIER. No reliable reactivity was observed with PG 27b. IBL AP-ab antibody resulted in weak to moderate reactivity. It was higher without HIER than with TEG MW, in contrast to cancer reactivity. There was no reliable reactivity with IBL Mab antibody. Cayman AP-ab showed mostly weak reaction after HIER, but it was higher if no antigen retrieval was performed. Sc-7951 stained muscle weakly. Novocastra Mab and sc-1745 were the main "muscle reactors". Literature data suggest consistent presence of COX-1 in smooth muscle, along with focal induction of COX-2 in the sites of injury (Komhoff et al., 2000). However, other authors mentioned positive reaction in smooth muscle as internal positive control (Ohno et al., 2001; Lim et al., 2000; Kawabe et al., 2002). The last recommendation included sc-1745 but was not specific for it. The present experimental and literature data result in two hypothetic possibilities - either sc-1745 display high sensitivity or cross-reaction with a protein that is present in smooth muscle fibres. At the level of present knowledge, smooth muscle positivity with sc-1745 reflects the general quality of IHC as smooth muscle cells is consistently reactive with this particular antibody. However, it does not provide any data about specifity of sc-1745 and cannot be used as general internal control for COX-2 visualisation with other primary antibodies. Reactivity with nerve fibres was found with most of tested antibodies, except for PG 27b in all protocols and IBL Mab in most of protocols (5/7). The most intense reactivity was observed with Cayman AP-ab (figure), closely followed by the most sensitive protocols for Cayman Mab, sc-1745 and Novocastra Mab. Primary anti-COX-2 antibodies Cayman Mab was characterized by high sensitivity as reflected by high total and final cancer scores, low background that was eradicated by lowering concentration of the primary antibody, and well-defined pattern, consistent with the ultrastructural findings: by EM IHC, COX-2 was found on the luminal surfaces of the endoplasmic reticulum and nuclear envelope (Tatsuguchi et al, 2000, Gut). Cayman Mab has been previously evaluated by Saukkonen et al. This group has characterized this antibody as specific based on preadsorption using the antigenic peptides. Cayman Mab at dilution 1:50 after HIER in microwaves, 2.5 min. at 800 W followed by 15 min. at 440W, stained 7/8 intestinal type gastric adenocarcinoma specimens, which had been shown previously to express elevated levels of Cox-2 mRNA. Immunoreactivity obtained by the Mab and by the Cayman AP-ab colocalized and correlated in intensity. Saukkonen et al. have tested also polyclonal antibody PG 27b. At dilution 1:1000 it stained the known COX-2 positive tumours only weakly or gave high background staining. The characteristic pattern of dotted line was found with this antibody as well as with polyclonal 160106 and 160116, Cayman Chemical. Preadsorption using the antigenic peptides reduced the positivity of the polyclonal antibodies only partially: the diffuse cytoplasmic positivity was completely blocked, dotted line was not blocked. In a study comparing monoclonal antibody from Cayman Chemical in dilution 1:250 and PG 27 in dilution 1:200, after HIER in microwaves for 10 min. in high power, preheating citrate buffer to 95°C, different staining patterns were found. Cayman Mab did not react with normal colonic epithelium, but stained tubular adenoma cells in diffuse cytoplasmatic pattern, as well as subsurface myofibroblasts. No staining in inflammatory cells or smooth muscle was observed. PG 27 reacted with a discrete area near the nucleus on the apical side of epithelial cell both in the normal crypt, surface epithelium and adenoma. Cytoplasm of scattered stromal cells showed positive staining. At higher magnification, diffuse granular stain was seen in the cytoplasm of the epithelial cells. A light granular stain occurred in cytoplasm of muscularis mucosa and vascular endothelium (Garewal et al, 2003). According to these literature data, it might seem that PG 27b reactivity is wider than that of Cayman Mab and includes normal colonic epithelium. Our data did not to confirm this - reactivity is coincident or wider for Cayman Mab in diffuse cancer. Cayman Mab reacts with normal colon if the concentration is not very low and antigen retrieval is sensitive. Literature data also confirms presence of low level of COX-2 in colonic epithelium. Low-level constitutive COX-2 was detected in colonic epithelium by IHC, verified by Western blot and quantitative RT-PCR (Koki et al, 2002). Normal colonic epithelium expressed low levels of COX-2 mRNA (Lim et al.,). Thus, data from independent studies, using different methods, confirmed presence of low level of COX-2 in non-neoplastic colonic epithelium. Our findings with Cayman Mab are in accordance. Normal colonic epithelium was also reactive with Novocastra Mab. So, the described reactivity of PG 27b with colonic epithelium does not seem to be unspecific. Cayman Mab in the report of Garewal et al. was unreactive due to high dilution and HIER in citrate that in our experience consistently retrieves less reactivity than HIER in basic buffer. Our data confirm the finding that low temperature HIER is more effective than treatment in MW for PG 27b (Shi et al, 2002). It is also more effective for Novocastra Mab and can be used for sc-1745. However, MW treatment is beneficial for "strong reactors" Cayman Mab and IBL AP-ab and "weak reactors" sc-7951 and Cayman APab. It seems that COX-2 molecule it not destroyed by boiling but some epitopes might be changed. This also emphasize that COX-2 antibodies recognize different epitopes and thus may exhibit also different cross-reactivity. The fact is emphasized also by lack of correlation in the staining intensity of different structures. IBL AP-ab is described by Ohno et al. and Uefuji et al. Intense diffuse cytoplasmic immunoreactivity (using anti-COX-2 1:20 - 90 min. no HIER) was observed in tumour cells. Stroma and normal gastric glands were negative, but smooth muscle was used as internal control (Ohno et al., 2001). By IHC using rabbit polyclonal antihuman-COX-2 (Immunobiological Laboratories, Fujioka, Japan) at 4°C overnight after HIER at 90°C for 9 min., sporadic staining was observed in the normal fundic and metaplastic glandular cells in all cases. IHC demonstrated diffuse cytoplasmic and perinuclear stain in cancer cells. No expression of COX-2 was observed in inflammatory mononuclear cells or fibroblasts (Uefuji et al., 1998). The most characteristic trait of IBL Mab was the almost complete lack of epithelial reactivity. According to literature data and results obtained with other antibodies, the reactivity in erosion and subset of plasmatic cells might be true, but represent only part of the reactivity shown by other antibodies. Cayman AP-ab has been tested by Saukkonen et al. As with the Cayman Mab, all of the staining in tumour cells was blocked by the antigenic peptides but not by smooth muscle actin peptide. No staining was observed in the unspecific areas that were positive with die nonpurified polyclonal antibodies. Immunoreactivity obtained by the Cayman Mab and by the AP-ab colocalized and correlated in intensity. The signal intensity of the Mab was stronger than that of AP-ab. Sc-1745 has been tested in the study of Saukkonen et al., as well. At concentration 1:1000 it stained the tumours only weakly or gave high background staining. COX-2 in GIST The 4 anti-COX-2 antibodies revealed significant differences in the staining intensity, distribution, variability and even pattern. As the testing was performed on the same tissues, it is evident that the differences are generally technological. This is in agreement with literature data that present markedly different results of immunohistochemical COX-2 protein expression in comparable tissue structures (Zimmerman et al., 1999; Morris et al., 2001; Lim et al., 2000; Saukkonen et al., 2001). However, the presented data prove the role of technology exactly and evidently as the reactivity of all antibodies is determined and assessed on the same tissues. 83.3% of GISTs (5 of 6) showed at least moderately intense cytoplasmic granular positive reaction, if IHC was performed by Cayman Mab. This is in agreement with the results of Sheehan et al. (2003), who have found positive expression of COX-2 protein in 80% of GISTs by comparable IHC technology. The staining obtained by different primary anti-COX-2 antibodies was qualitatively and quantitatively different as seen by different total cancer scores and different expression patterns. The Cayman Mab provided the most consistent results. It had strict staining pattern - granular cytoplasmic - that is an important criterion of the specifity of an antibody. PG 27b exhibits peculiar reactivity pattern (Garewal el at., 2003) but generally did not stain GISTs or reacted weakly. Sc-1745 was characterized by widespread reactivity with different tissues (Lirn et al., 2000). This, along with the marked muscular reactivity suggests lack of specifity (Komhoff et al.) Sc-7951 exhibited crossreactivity with a serum component that compromised the quality of staining and the ease of evaluation, especially in oedematous areas, common in GISTs. Basing on the markedly different staining with 4 anti-COX-2 antibodies, it may be hypothesised that COX-2 has either complex or unusually dynamically changing tertiary or quaternary structure. These higher-level structures could not be encountered if immunization was carried out by peptide fragments that probably reflected only the primary and secondary structure of the epitope. The differences in staining intensity and pattern cannot be explained by hypothetic biochemical similarity between any part of COX-2 molecule and some other protein. There is no correlation in staining pattern and intensity between those three primary antibodies that are directed towards closely related epitopes in the carboxyl terminus of COX-2 molecule. Alternatively, COX-3 hypothesis has to be considered. As no correlation was observed between COX-2 expression and morphological structure of a tumour, it can be concluded that COX-2 is essential for the development of the tumour. Thus, GIST can be added to the growing list of COX-2-dependant tumours that possibly could be treated by blocking of this molecule, or prevented by pharmacological COX-2 inhibition or eradication of the conditions that cause pathological COX-2 over expression. COX-2 expression in Barrett's oesophagus The study has resulted in several important findings. Firstly, the COX-2 expression in Barrett's oesophagus was identified and distribution of reactivity obtained. The pattern and location of immunoreactivity also was described. The aging changes were described analysing the COX-2 expression in macrophages, IM and squamous epithelium. Qualitative changes in the COX-2 immunoreactivity pattern in plasmatic cells also were described. The COX-2 expression in erosions was found to be sensitive to the aging of blocks and data were provided. CONCLUSIONS 1. Standardization is an essential part of the complex technology of IHC. It must be performed by total test procedure in accordance to local characteristics of morphological material with following gain in quality and beneficial economic effect. Total test assured optimal quality of the IHC that resulted in higher probability of reaching the correct diagnosis in biologically complex cases and pathologist -friendly analysis. Testing different technological variations on local material provided important irreplaceable information that could not be obtained from literature as it was dependant on the local peculiarities. This information changed the methodology significantly for high fraction (91.6% in the presented experience) of antigens. 2. The total test results in a rare, still scientifically justified combination of higher quality and higher cost-effectiveness. The economic effect of 4.67- 141.69 LVS is obtained on 75.9% of primary antibodies. The economic effect mostly is equal to the residual expenses or even exceeds those, thus saving more than 50% of the IHC budget for primary antibodies. 3. IHC is highly informative technology in biomedical research and diagnostic work. IHC was confirmatory in 18.2% cases and mandatory in 51.5% (17/33) cases of primary pleural and chest wall tumours, including all pleural neoplasms and tumours presenting with small blue cell pattern. Randomly selected field of pathology showed an important role of IHC as a general diagnostic technology. 4. As COX-2 protein is found in different cell types, immunohistochemistry for the detection of COX-2 protein is the optimal tool for enrolling patients into preventive trials. However, technical variations, using different anti-COX-2 primary antibodies are enormous. The quantitative estimates of COX-2 expression on the same cases implying no biological variations among the material tested with each antibody still differ largely. The total cancer score is variable in dependence from the antibody. Quantitative differences are accompanied with qualitative differences. The final cancer scores vary from positive to negative values the last meaning that cancer reactivity is less than background even in the cancer-optimal protocol. The impact of technological factors upon the evaluation of COX-2 expression is larger than the influence of biological factors. Detailed knowledge of COX-2 IHC technology is necessary in order to avoid estimating technology-based differences as biological differences. 5. The COX-2 protein expression is influenced not only by the choice of primary anti-COX-2 antibody but also the mode of antigen retrieval. The important variables in HIER are pH of HIER buffer and temperature regimen. Although HIER in CIT is characterised by consistently lower sensitivity than HIER in TEG, each of the mentioned variables may have the largest impact in dependence from the primary antibody and concerned tissue structure. The variability of the most important HIER factor, as evident between antibodies and scores of cell type or morphologic structure, suggest no homogeneity of epitopes. 6. Monoclonal anti-COX-2, Cayman Chemical showed a characteristic granular cytoplasmic staining in the positive cancer cells. Stromal reactivity was evident best if HIER was performed in basic buffer. Cancer stain was more dependant on the amount of the absorbed energy that plasma cell or macrophage score. All scores, their relations and staining pattern changes if no HIER is applied, effect, that cannot be explained solely by higher background. 7. PG 27b showed markedly different epithelial patterns - the most characteristic, supranuclear cleaved dot; apical or membranous in cancer cells; highly heterogeneous intense cytoplasmic in squamous cell cancer; diffuse small cytoplasmic granules in diffuse cancer; and diffuse, weak or moderate reactivity in foveolar but not colonic mucus. The stromal reactivity with PG 27b was limited. Macrophages and fibroblasts in erosions were intensively positive. The most effective antigen retrieval for this particular antibody was heating in basic buffer at 90"C for 30 min. 8. The epithelial pattern of IBL, AP-ab was diffuse cytoplasmic, consistently combined by recognition of subset of mitoses. IM showed a combination of focal cytoplasmic reactivity and brightly staining subgroup of endocrine-like cells. Omitting HIER lead to qualitatively different pattern in the aspect of IM: although the intensity of cytoplasmic reactivity was relatively high, the subpopulation of brightly positive cells was not evident; result that is not consistent with different sensitivity only. 9. The general pattern for IBL monoclonal anti-COX-2 includes cancer negativity in combination with bright reactivity of macrophage and fibroblast-like cells in erosions and a subset of plasma cells. 10.Affinity-purified polyclonal antibody, Cayman Chemical showed a combination of cytoplasmic, membranous and apical reactivity in cancer cells. Consistent bright reactivity was observed in nerve fibres and neurons. The reactivity pattern with NC Mab in cancer cells was diffuse cytoplasmic with frequent nuclear reactivity. Diffuse cancer was mostly unreactive. The cancer reactivity with Santa Cruz polyclonal antiCOX-2, sc-7951 was pale, diffuse cytoplasmic, highly heterogeneous. The lack of recognisable pattern burdened the discrimination between true reactivity and background. ll. Sc-1745 showed 2 staining patterns in cancer cells: trend to membranous enhancement and diffuse cytoplasmic reactivity. A characteristic trait of sc-1745 was trend to diffuse, total reactivity in foveolar epithelium, IM and smooth muscle in all protocols. As the width of reactivity was not confirmed by the reactivity with other anti-COX-2 antibodies, unspecific cross-reaction must be considered. 12.COX-2 expression in high-grade cancers is possible, but not all primary antiCOX-2 antibodies will identify the reactivity even if the protein is present and would be detected by other primary antibodies. Thus, choice of primary antibody is the critical decision in studies of relation between COX-2 expression and tumour grade. This choice will also influence studies that concern COX-2 expression as prognostic factor, as prognosis is known to be influenced by tumour grade. 13. GISTs can be reliably diagnosed by IHC. The recommended diagnostic panel includes CD117, CD34, CD31, desmin, S-100, cytokeratin AE1/AE3 and Ki-67. The morphologic features of GIST in routine histological stains may be confusing, mimicking epithelial, neuroendocrine, neural or muscular tumours. Pseudoschwannomatous palisades are typical for GIST. 14. Although the primary antibodies, included in the diagnostic panel, have distinct informative value in the identification of the histogenesis of mesenchymal tumours, they react also with particular normal cells. Such tissue elements may also be entrapped within a tumour. Awareness of this reactivity is mandatory in order to avoid over diagnosis or diagnostic confusion and can provide endogenous positive controls with beneficial economic consequences. The recommended endogenous positive control elements in the diagnostics of GIST include mast cells for CD117, endothelium for CD31 and CD34, macrophages or nerves for S-100, vascular smooth muscle or lamina muscularis mucosae or lamina muscularis propria for desmin, nuclei of the epithelial cells in the proliferative zone for Ki-67. 15.The pattern of immunohistochemical COX-2 expression in GIST is specific for each primary antibody - cytoplasmic granular with the monoclonal mouse antibody from Cayman Chemical, weak finely granular with polyclonal rabbit antibodies PG 27b (Oxford Biomedical research) and sc-7951 (Santa Cruz Biotechnology), diffuse cytoplasmic with affinity purified goat antibody sc-1745 (Santa Cruz Biotechnology). The incidence of COX-2 reactivity in GISTs is highly dependant on the primary antibody. The majority of GISTs (83.3%) express COX-2 protein by immunohistochemical visualisation with Cayman monoclonal anti-COX-2. There is no correlation between the expression of COX-2 and various biological factors, as the tumour localisation, cell type, morphological structure, particular architectural details, total or partial immunophenotype, degree of mitotic activity. Thus, over expression of COX-2 in GISTs may be an essential detail and an underlying mechanism of tumorigenesis. 16.COX-2 expression is observed in 75% of Barrett's oesophagus and cardiac intestinal metaplasia. The immunohistochemical expression of COX-2 protein in intestinal metaplasia in the model of Barrett's oesophagus and cardiac intestinal metaplasia, squamous epithelium, macrophages, plasma cells and erosions diminishes with increase of the time period elapsed between biopsy and analysis. The remaining reactivity is linear function of time. The "aging" of blocks cause not only quantitative but also qualitative changes in COX-2 expression. 17.COX-2 expression correlates inversely with the grade of neoplasia. According to the obtained data, COX-2 is up-regulated early in the cancerogenesis of oesophagus and cardia, and may be lost in high-grade cancers due to progressive genomic instability. PRACTICAL RECOMMENDATIONS 1. Starting IHC, total test is strongly recommended. 2. The presented work has resulted in protocols for immunohistochemical visualisation of 48 antigens (table 3) in FFPE tissues by LSAB, ABC or EnVision systems. These protocols provide background in further standardization of IHC on local material and can be recommended as a starting point for standardization, when testing local pathomorphological material. Such focused standardization could result in even higher cost-effectiveness due to lower number of variations. Table 3. Standardized IH technologies Nr. 1. 1 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. 20. Antigen 2 CK AE1/A 1-3 CK 7 CK20 CK 8, LMW CK 5/6 CK HMW Mesothelial cell Epithelial antigen EMA CEA TTF-1 SuAA Vimentin Desmin Actin S-100 protein GFAP ChrA Synaptophysin NSE 21. AKTH 22. CD45 23. 24. 25. 26. 27. 28. 29. 30. 31. 32. 33. 34. 35. 36. CD3 CD20 CD30 CD31 CD34 class II CD68 CD117 Melanosome protein Ki-67 ER alpha PR Thrombomodulin BCL2 P53 protein Primary antibody characteristics 3 MM-AH,cloneAEl/AE3,codcM3515 MM-AH, clone OV-TL 12/30, code M7018 MM-AH, clone Ks20.8, code M7019 MM-AH, clone 35betal H11, code M0631 MM-AH,cloneD5/16B4,code M7237 MM-AH, clone 34betaE12, M0630 MM-AH, cloneHBME-l, code M3505 MM-AH, clone Ber-EP4, code M0804 MM-AH, clone E29, code N1504 MM-AH, clone II-7, code Nl586 MM, clone 8G7G3/1, code M3575 MM-AH, clone PE-10, code M4501, MM, clone 3B4, code M7020 MM, clone D33, code M0760 MM-AH, clone HHF35, code M0635 PR, code Z0311 PR, code Nl 506 PR-AH, code N1535 PR-AH, cat. code N1566 MM-AH, clone BBS/NC/VI-H14, code N1557 PR, cat. code Nl 531 MM-AH, clones 2B11 and PD7/26, code M0701 MM-AH, clone PC3/ 188A, code M7193 MM-AH, clone L26, code M0755 MM-AH, clone Ber-H2, code M0751 MM-AH, clone JC70A, code N1596 MM-AH,clone QBEnd 10,codeN 1632 MM-AH, clone PG-M1, M0876 PR-AH CD117, code A4502 MM-AH, clone HMB-45, code M0634 MM-AH, clone MIB-1, code M7240 MM-AH, clone 1D5, code N1575 MM-AH, clone 1A6, code N1595 MM, clone 1009, code M0617 MM-AH, clone 124, code M0887 MM-AH, clone DO-7, code M7001 D 4 1:200 1:800 1:200 1:200 1:100 1:400 1:50 1:800 1:1 1:1 1:100 1:400 1:200 1:200 1:200 1:4000 1:1 1:1 1:1 1:1 T 5 60 60 60 60 60 60 60 60 8 8 60 60 60 60 60 60 8 8 8 5 1:1 1:200 8 60 1:200 1:1000 1:50 1:1 1:1 1:800 1:400 1:200 60 60 60 30 30 60 60 60 1:100 1:1 1:1 1:50 1:400 1:400 60 60 60 60 60 60 1 37. 2 Amyloid A 38. Alpha chains, Ig 39. Gamma chains, Ig 40. Mi chains, lg 41. 42. 43. 44. 45. Kappa chains, Ig Lambda chains, Ig HP CF Clq CF C3c 46. CF C4c 47. Fibrinogen 48. vWf 3 4 5 MM-AH, clone mc 1, code M0759 PR-AH, code N1507 PR-AH, code N1508 1:400 1:1 1:1 60 8 PR-AH, code N1509 PR-AH, code Nl510 PR-AH, code N1513 PR, code B0471 PR-AH, code A0136 PR-All, code A0062 PR-AH, code A0065 PR-AH, code A0080 PR-AH, code N1505 1:1 1:1 1:1 1:400 1:400 1:800 1:800 1:400 1:1 8 8 8 8 60 60 60 60 60 5 Abbreviations: Nr., number of the sequence in the table; D, optimal dilution as determined by total test; T, incubation time; min., minutes; CK, cytokeratin; MMAH, monoclonal mouse antibody against human antigen; code, catalogue code, DakoCytomation; LMW, low molecular weight; HMW, high molecular weight; EMA, epithelial membrane antigen; CEA, carcinoembryonic antigen; TTF-1, thyroid transcription factor-1; MM, monoclonal mouse antibody; SuAA, surfactant apoprotein A; S-100, S-100 protein; PR, polyclonal rabbit antibody; GFAP, glial fibrillary antigen protein; ChrA, chromogranin A; PR-AH, polyclonal rabbit antibody against human antigen; NSE, neuron specific enolase; ACTH, adrenocorticotropin; CD, cellular determinant; ER, estrogen receptor; PR, progesteron receptor; Ig, immunoglobulin; HP, Helicobacter pylori; CF, complement fraction; vWf, von Willebrandt factor. 3. As COX-2 is expressed in many cell types, IHC is the optimal tool for the COX-2 analysis as it allows direct visual identification of the positive elements. 4. However, major differences in the results can be obtained by purely technological differences therefore the choice of appropriate protocol is of utmost importance. Based on our results, the following protocol is optimal. Formalin-fixed paraffin-embedded tissues were cut at 3-micrometer-thickness on electrostatically charged Histobond glass slides (Menzel Glasser, Germany) and incubated in 60°C for 1 hour to ensure tissue adhesion to slides. Deparaffinisation and rehydration was carried out by routine treatment in xylene and graded ethanol. Endogenous peroxidase activity was blocked by 0.5% hydrogen peroxide in methanol for 10 minutes. Antigen retrieval was achieved with HIER in domestic microwave for 3x5 min. at maximum power in TEG buffer (Tris-EGTA buffer, pH 9.0), followed by 20 min. cooling in the same HIER buffer at RT. The incubation with primary antibody was carried out using Cayman Mab at dilution 1:100 for 60 min. at room temperature. After the incubation with the primary antibodies, slides were rinsed with TBS buffer (Tris buffered saline, THAM-HC1 50mM/L, NaCl 150mM/L, pH 7.6), 2x5 min. A commercially available horseradish peroxidase-linked polymer-based visualisation system EnVisionTM + (DakoCytomation, cat. code 4001) was used for detection of bound mouse primary antibody, incubating the slides in a humid chamber for 30 minutes, with following rinse in TBS as previously. 3,3'-diaminobenzidine (DakoCytomation, cat. code S3000) solution was used as the chromogenic substrate (10 min). Slides were rinsed in water and counterstained in haematoxylin for 3 min. After colour development in tap water (5 min.) slides were coverslipped using aqueous mounting medium Paramount (DakoCytomation, cat. code S3025). Positive and negative control slides were included in each run. PUBLICATIONS 1. Immunohistochemical Expression of Cyclooxygenase-2 in Archival Tissues from the Upper Gastrointestinal Tract: The Influence of Biological and Technical Variables on Staining Using Commercial Antibodies. I. Strumfa, H. Hager, B. Norgard, H. T. Sorensen, S.J. Hamilton-Dutoit. In press. 2. Immunohistochemical expression of cyclooxygenase-2 in gastrointestinal stromal tumours: a complex interplay of biological and technical factors. L. Strumfa, L. Feldmane, G. Volanska. Accepted for publication in the Scientific Proceedings of Riga Stradiņš University, 2004. 3. Standardization and diagnostic value of immunohistochemistry in gastrointestinal stromal tumours. I. Strumfa, L. Feldmane, G. Volanska. Accepted for publication in the Scientific Proceedings of Riga Stradins University, 2004. 4. Intrathoracic PNET in an elderly patient with a history of solid tumour. L Strumfa, U. Kopeika, L. Feldmane, J. Basko. Accepted for publication in the Acta Chirurgica Latviensis. 5. Diagnostic value of immunohistochemistry in primary pleural and chest wall tumours. I. Strumfa, L. Feldmane, G. Volanska. Accepted for publication in the Scientific Proceedings of Riga Stradins University, 2004. 6. Giant intrathoracic tumour associated with hypoglycemia [Hipoglikēmisks sindroms gigantiska intratorakāla audzēja gadījumā]. K. Ducena, S. Šteina, A. Štifts, V. Pīrāgs, I. Strumfa, J. Basko. "For You, Colleagues" [„Jums, Kolēģi"], 06/2004, 72-5. 7. Gastrointestinal stromal tumour - up-to-dated concept and diagnostics in Latvia [Gastrointestināls stromāls tumors - potenciāli ārstējama audzēja mūsdienīga koncepcija un diagnostika Latvijā]. I. Strumfa, L. Feldmane, G. Volanska. The Scientific Proceedings of Riga Stradins University: 2003, 381388, 2004, Riga, Latvija. 8. Primary giant cell tumour of bone in the lung. 1. Strumfa, L. Feldmane, G. Ambalovs, J. Basko. European Respiratory Journal, 2002, Vol. 20, Suppl. 38, 467s. 9. Malignant mesothelioma of pleura. J. Basko, R. Henina, J. Lejnieks, J. Fridlenders, 1. Strum fa. European Respiratory Journal, 2002, Vol. 20, Suppl 38 40s. l0. Pathoinorphological changes and (heir dynamics (1993-2001) in the upper part of the digestive tract of Chernobyl clean-up workers residing in Latvia. 1. Strumfa, L. Feldmane, M. Eglite, E. Churbakova. Proceedings of the Latvian Academy of Sciences, 2002, Vol. 56, N. 3, 114-120. 1 1.Malignant paraganglioma of the anterior mediastinum. 1. Strumfa, A. Pirtnieks, L. Feldmane, J Bashko. Proceedings of the 3rd Baltic congress of Oncology, 2002, Lithuania, 116. 12.Relation between occupational lung diseases and primary malignancies of lung and pleura in the population of Latvia. I. Strumfa, J. Bashko, L.Feldmane, A. Lange, A. Pirtnieks, M. Eglite. Proceedings of the 3rd Baltic congress of Oncology, 2002, Lietuva, 123. 13.Extended pathomorphology diagnostic possibilities in the Institute of Pathology, P. Stradin's Clinical University hospital [Diagnostisko iespēju paplašināšanas P.Stradiņa Klīniskās universitātes slimnīcas Patoloģijas institūtā]. L. Feldmane, L Strumfa. "For You, Colleagues" [Jums, kolēģi; 4/2002, 55-57. 14.Asbestos in Latvia. M. Eglite, J. Jekabsone, I. Lielpetere. In: "The Asbestos Legacy", Vol. 23 of "The Sourcebook on Asbestos Diseases: Medical. Legal and Enginecering Aspects", ed. by Peters G. A., Peters B. G., USA: Lexis Nexis Group, 2001,409-423. 15. The quality of work in the Institute of Pathology, P. Stradin's Clinical University hospital [Darba kvalitātes pacēlums BO VAS "P.Stradiņa Klīniskā Universitātes slimnīca" Patoloģijas institūtā]. L. Feldmane, I. Strumfa. Quality [Kvalitāte], 5/2001, 18-19. 16.Histological microdissection of complex neoplastic tissue - a new metod for genetic and proteonomic analysis in cancer diagnostic and research. A Technical Advance. I. Lielpetere, L.M. Gjerdrum, St. Hamilton - Dutoit. The Proceedings of the 2nd World Congress of Latvian Scientists [2. Pasaules Latviešu zinātnieku kongresa tēžu krājums], 2001, 406. 17.The use of tissue microdissection in the genetic analysis of tumours [Kompleksu audu histoloģiskā lāzera mikrodissekcija - jaunas ģenētiskas analīzes iespējas audzēju diagnostikā un pētījumos]. I. Lielpētere, L. M. Gjerdrum, St. Hamilton Dutoit. The Proceedings of the 4th World Congress of Latvian doctors [Pasaules latviešu ārstu 4. kongresa tēzes], 2001, 115-116. 18.The pathomorphology of the upper gastrointestinal mucosa in Chernobyl clean-up workers [Morfoloģiskas izmaiņas gremošanas trakta augšdaļā Černobiļas AES katastrofas seku likvidētājiem: ainas dinamika un saistība ar kompleksām izmaiņām organismā]. I. Lielpētere, L. Feldmane, E. Čurbakova, M. Eglīte. The Proceedings of the 4th World Congress of Latvian doctors [Pasaules latviešu ārstu 4. kongresa tēzes], 2001, 116-117. 19.Laser-Assisted Microdissection of Membrane-Mounted Paraffin Sections for Polymerase Chain Reaction Analysis: Identification of Cell Populations Using lmmunohistochemistry and In situ Hybridization. L. M. Gjerdrum, I. Lielpētere, St. Hamilton - Dutoit. The Journal of Molecular Diagnostics, 2001, Vol.3 (3):105-110. PRESENTATIONS IN CONGRESSES AND CONFERENCES 1. The pathology in Latvia and abroad. I. Strumfa. The Conference of P. Stradin's Clinical University Hospital, 27.05.2004. 2. GIST. I. Strumfa. The Conference of the Latvian Association of surgeons, 23.05.2003. 3. GIST. I. Strumfa. The Conference of the Latvian Centre of Oncology, 28.03.03. 4. Lung cancer: morphological and immunohistochemical study. I. Strumfa. The Conference of the Latvian Association of pneumonologists, 20.03.2003. 5. Immunohistochemistry in the diagnostics of gastrointestinal diseases. I. Strumfa. The Conference of the Latvian Association of Gastrointestinal endoscopy, 26.02.2003. 6. Pathomorphological diagnostics of celiac disease. I. Strumfa. The Conference of the Latvian Association of Gastrointestinal endoscopy, 26.02.2003. 7. The novelties in the morphological diagnostics of thoracic pathology. I. Strumfa. The Conference of P. Stradin's Clinical University Hospital, 20.02.2003. 8. The pitfalls in diagnostics and differential diagnostics of gastric and intestinal pathology. I. Strumfa. The Conference of the Clinics of Internal Diseases, P. Stradin's Clinical University Hospital, 18.02.2003. 9. The morphology of gastrointestinal lymphomas. I. Strumfa. The Conference of P. Stradin's Clinical University Hospital, 19.09.2002. l0. Primary giant cell tumour of bone in the lung. I. Strumfa, L. Feldmane, G. Ambalovs, J. Basko. 12th European Respiratory Society Annual Congress, Stockholm, Sweden, 14.-18.09.2002. 11.Malignant mesothelioma of pleura. J. Basko, R. Henina, J. Lejnieks, J. Fridlenders, I. Strumfa. 12th European Respiratory Society Annual Congress, Stockholm, Sweden, 14.-18.09.2002. 12.The pleural pathology: morphological and immunohistochemical study. I. Strumfa. The Conference of the Latvian Association of pneumonologists, 30.05.2002. 13.Malignant paraganglioma of the anterior mediastinum. I. Strumfa, A. Pirtnieks, L. Feldmane, J Bashko. 3rd Baltic congress of Oncology, 02-04.05.2002, Vilnius, Lithuania. 14. Relation between occupational lung diseases and primary malignancies of lung and pleura in the population of Latvia. I. Strumfa, J. Bashko, L. Feldmane, A. Lange, A. Pirtnieks, M. Eglite. 3rd Baltic congress of Oncology, 03.05.2002, Vilnius, Lithuania. 15. Case reports in the Conferences of the P. Stradin's Clinical University Hospital: 99 cases. I. Strumfa 2001.-10.2004. 16. Histological microdissection of complex neoplastic tissue - a new metod for genetic and proteonomic analysis in cancer diagnostic and research. A Technical Advance. I. Lielpetere, L.M. Gjerdrum, St. Hamilton - Dutoit. The 2nd World Congress of Latvian Scientists, 14.08.2001. 1 17. The use of tissue microdissection in the genetic analysis of tumours. I. Lielpetere, L. M. Gjerdrum, St. Hamilton - Dutoit. The 4" World Congress of Latvian doctors, 22.06.2001. 18.The pathomorphology of the upper gastrointestinal mucosa in Chernobyl clean-up workers. I. Lielpetere, L. Feldmane, E. Churbakova, M. Eglite. 'The 4th World Congress of Latvian doctors, 20.-22.06.2001. 19. Immunohistochemistry in diagnostics and research. I. Lielpetere. The Conference of P. Stradin's Clinical University Hospital, 31.05.2001. 20.The morphology of gastric mucosa in Chernobyl clean-up workers. I. Lielpetere, L. Feldmane, E. Churbakova. AML/RSU Scientific conference, 25.02.2000.
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