Measurements of the absorption cross section of 13CHO13CHO at

The Journal of Physical Chemistry
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Measurements of the absorption cross section of
13CHO13CHO at visible wavelengths and application to
DOAS retrievals
Journal:
Manuscript ID:
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The Journal of Physical Chemistry
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Article
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Goss, Natasha; University of Colorado, Chemistry and Biochemistry
Waxman, Eleanor; University of Colorado, Chemistry and Biochemistry;
University of Colorado, CIRES
Coburn, Sean; University of Colorado, Chemistry and Biochemistry;
University of Colorado, CIRES
Koenig, Theodore; University of Colorado, Chemistry and Biochemistry;
University of Colorado, CIRES
Thalman, Ryan; University of Colorado, Chemistry and Biochemistry;
University of Colorado, CIRES
Dommen, Josef; Paul Scherrer Institute,
Hannigan, James; National Center for Atmospheric Research, Atmospheric
Chemistry Division
Tyndall, Geoffrey; National Center for Atmospheric Research, Atmospheric
Chemistry Division
Volkamer, Rainer; University of Colorado, Chemistry and Biochemistry;
University of Colorado, CIRES
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The Journal of Physical Chemistry
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Measurements of the absorption cross section of 13CHO13CHO at visible
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wavelengths and application to DOAS retrievals
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Natasha R. Goss1,a, Eleanor M. Waxman1,2, Sean C. Coburn1,2, Theodore K. Koenig1,2, Ryan
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Thalman1,2,b, Josef Dommen3, James W. Hannigan4, Geoffrey S. Tyndall4, and Rainer
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Volkamer1,2,*
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1
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80309-0215, USA.
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2
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at Boulder, Boulder, CO, 80309-0215, USA
Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, CO,
Cooperative Institute for Research in Environmental Sciences (CIRES), University of Colorado
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3
Paul Scherrer Institute, Villigen, Switzerland.
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4
NCAR/ACD, Mesa Lab 041, Boulder, CO, 80307, USA.
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a
now at: Dept. of Earth and Planetary Sciences, Harvard University, Cambridge, MA, 02138,
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USA.
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b
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Department, Upton, NY, 11973, USA.
now at: Brookhaven National Laboratory, Biological, Environmental and Climate Sciences
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*
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Rainer Volkamer, Department of Chemistry and Biochemistry & CIRES, University of Colorado
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at Boulder, Boulder, CO, 80309-0215, USA. Phone: +1 (303) 492-1843. Fax: +1 (303) 492-
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5894. email: [email protected]
Corresponding author address:
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Manuscript prepared for submission to J. Phys. Chem. (Mario Molina Festschrift)
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Last edited 8 November 2014
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Abstract
The trace gas glyoxal (CHOCHO) forms from the atmospheric oxidation of hydrocarbons
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and is a precursor to secondary organic aerosol. We have measured the absorption cross section
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of disubstituted 13CHO13CHO (13C glyoxal) at moderately high (1 cm-1) optical resolution
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between 21280-23260 cm-1 (430-470 nm). The isotopic shifts in the position of absorption lines
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were found to be largest near 455 nm (∆ν =14 cm-1; ∆λ = 0.29 nm), while no significant shifts
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were observed near 440 nm (∆ν < 0.5 cm-1; ∆λ < 0.01 nm). These shifts are used to investigate
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the selective detection of 12C glyoxal (natural isotope abundance) and 13C glyoxal by in situ
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Cavity Enhanced Differential Optical Absorption Spectroscopy (CE-DOAS) in a series of
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sensitivity tests using synthetic spectra, and laboratory measurements of mixtures containing 12C
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and 13C glyoxal, nitrogen dioxide and other interfering absorbers. We find the changes in
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apparent spectral band shapes remain significant at the moderately high optical resolution typical
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of CE-DOAS (0.55 nm FWHM). CE-DOAS allows for the selective online detection of both
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isotopes with detection limits of ~200 pptv (1 pptv = 10-12 volume mixing ratio), and sensitivity
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towards total glyoxal of few pptv. The 13C absorption cross section is available for download at
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http://chem.colorado.edu/volkamergroup/index.php/publications.
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Keywords: glyoxal, 12C, 13C, absorption spectroscopy, isotope shifts
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1. Introduction
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Glyoxal (CHOCHO) is an alpha-dicarbonyl product of hydrocarbon oxidation in the
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atmosphere and a useful indicator of volatile organic compound (VOC) photochemistry.1-3 The
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atmospheric degradation of biogenic VOCs such as isoprene and its oxidation products is the
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largest source of glyoxal worldwide but it also has anthropogenic and biomass burning sources.42
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hours.6, 7 Glyoxal can also be lost heterogeneously through aerosol uptake to form secondary
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organic aerosol (SOA).9
Photolysis and reaction with OH radicals limit glyoxal’s lifetime during daylight to a few
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The extent of glyoxal’s contribution to SOA formation is of current interest. 8-14
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Laboratory studies have shown that it can produce significant SOA in the presence of light,9, 15
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and such studies have detected a number of products from multiphase reactions of glyoxal in
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model aerosols. Liggio et al.12 reported organosulfate formation from glyoxal using a low-
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resolution mass spectrometer and Galloway et al.14 reported a number of oligomers, imidazoles,
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and organosulfates in a series of experiments using a high-resolution aerosol mass spectrometer.
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However, some products that were attributed to glyoxal-SOA in laboratory experiments could
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indeed have been the result of chamber background contamination.16 Isotopic labeling of VOC
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precursors injected into the chamber can be utilized to separate SOA products formed due to
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repartitioning of chamber background from products formed from VOC precursor oxidation in-
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situ. Knowledge of the 13C glyoxal absorption cross-section is prerequisite for time resolved
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measurements of glyoxal isotopes, which can serve as useful tools in laboratory studies of SOA
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formation.
Rotational assignments of the strong à 1Au ← ෩
X 1Ag (π* ← n) transition at 455 nm are
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available for 12C and 13C glyoxal.17,18 The high-resolution absorption cross-section spectrum of
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observations,22 as well as calculations of glyoxal photolysis in the atmosphere.21 However, to
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date there is no UV-visible absorption cross section spectrum of 13C glyoxal available in the
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literature. We present absorption cross section spectra for 12C and 13C glyoxal, and explore their
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use to measure both isotopes by cavity enhanced absorption spectroscopy.
C glyoxal19 has undergone detailed evaluations,20, 21 and is widely used for global glyoxal
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2. Experimental Section
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Generation of 13C glyoxal
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Glyoxal is often synthesized by heating glyoxal trimer dihydrate crystals in the presence
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of P2O5.19 However, these methods were not practical for this work because 13C glyoxal is not
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readily available as either the trimer dihydrate form or in aqueous solution. Gas phase glyoxal
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(12C and 13C) was synthesized from the reaction of acetylene with chlorine radicals (see Figure 1)
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in the presence of oxygen with a 21% yield.23 The reaction was done at room temperature and a
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total pressure of ~620 Torr, in a reaction mixture that contained the following partial pressures: 3
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Torr of chlorine (Matheson, 99% purity), 80 Torr of acetylene (12C from Air Products, 13C from
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Sigma Aldrich), 150 Torr of oxygen (US Welding), back filled with nitrogen (General Air,
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boiled off from liquid dewar). To conserve reagent during the production of 13C glyoxal, the 13C
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acetylene was added to the cell first, then the excess was drawn off into the original vessel for
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later use with a liquid nitrogen trap. A UV blacklamp was used to initiate the reaction.
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Figure 1: Mechanism of chlorine-radical-initiated formation of glyoxal from acetylene.
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Recording of High-Resolution Visible Spectra
Spectra were collected using a Bruker 120 HR FTS equipped with an external lightemitting diode (LED) light source centered at 459 nm (FWHM 27 nm, LEDEngin). The LED
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light was collimated through a 1.00 m gas cell equipped with UV blacklamps for photolysis of
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chlorine gas (Figure 2). The LED was chosen as it yields higher photon flux and thus better
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signal-to-noise ratios (SNR) than Xe-arc or halogen lamps at blue wavelengths.24, 25 The
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instrument was configured for moderately high resolution (1 cm-1) and boxcar apodization was
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applied to the data.
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Figure 2: Experimental setup. A Light Emitting Diode (LED, 1) is collimated through the
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glyoxal-containing gas cell, and reflected by mirrors (2-4), a focusing lens (5) onto the FTS
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aperture (6).
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In addition to benefiting from higher photon flux, SNR is increased due to the smaller
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spectral range emitted by the LED. The SNR with FTS is inversely proportional to the number of
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points N in a spectrum, and benefits from examining narrower bandpasses according to:
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SNR = (2/N)1/2*(B(λ)/Bmean)*SNRx
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where B(ߣ) is the signal at the wavelength of interest and Bmean is the mean spectral signal. The
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interferogram noise SNRx is constant for a given instrument optical setup. The LED was
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temperature controlled to minimize baseline drift, which can be as low as 0.05% over 3 hours.25
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For comparison, Xe-emission lines that are superimposed on the thermal emission spectrum of
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Xe-arc light sources. These lines vary in shape and intensity with gas temperature and pressure.
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The lamp intensity can drift by up to 5.4% below 30,000 cm-1 or 20% above 30,000 cm-1 in 3
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hours, and is typically actively controlled.19, 26 Use of the LED was straightforward, but not free
Equation (1)
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of drift either (see below).
Prior to collecting glyoxal spectra, we took a one-hour reference spectrum of the gas cell
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containing pure nitrogen at atmospheric pressure. Once reagents were added and the reaction
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was initiated, we typically obtained glyoxal optical densities near 10% and were able to collect
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spectra for approximately 5 hours. Each spectrum had a one hour integration time and after
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collection was analyzed to determine whether glyoxal was still present. When the amount of
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glyoxal had substantially diminished, the cell was pumped out and flushed with nitrogen. A
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second one-hour reference was then collected. The attainable glyoxal SNR was optimized by
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varying photolysis lamp filtration, reactant concentrations, and flow cell surface-area-to-volume
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ratio. The optical density was most sensitive to chlorine concentration and was also affected by
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acetylene concentration. Under the final protocol, glyoxal loss to the reactor walls was limiting
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the attainable SNR in our setup.
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Spectra containing significant glyoxal were averaged and converted to absorption spectra
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using Beer’s Law:
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I
A = ln  0
 I
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where I0 is the average of the reference spectra, I is the spectrum to be analyzed, σ is the
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wavelength-dependent absorption cross section in cm2 per molecule, c is the analyte
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concentration in molecules per cm3, and l is the path length in cm. These absorption spectra were
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converted from optical density units to a cross-section independent of pathlength or
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concentration using:
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
 = σ cl

Equation (2)
I 
ln  0 
I
σ=  
cl
Equation (3)
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Normalization to the integrated absorption cross section from Volkamer et al.19 provided the
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absolute calibration, as is described in the next section.
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Baseline drift correction
The 12C and 13C glyoxal spectra were affected by baseline drift because the LED light
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source was not perfectly stable. The averaged spectra were corrected for baseline drift following
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the procedure described by Volkamer et al.19. First, the average 12C spectrum recorded here, and
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the literature high-resolution cross-section spectrum19 were both convolved with a Gaussian line
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function of 0.3 nm FWHM common resolution. Then the slant column density (SCD) (units
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molecules cm-2) of glyoxal in the 12C spectrum was determined by ordinary least-squares fitting
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using the literature spectrum as a cross-section. The original high-resolution 12C spectrum
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(optical density units) was then divided by this SCD to convert to units of cm2/molecule, and this
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cross-section spectrum was integrated over fixed 50 cm-1 intervals. Now the high-resolution
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literature spectrum was convoluted to 1 cm-1 optical resolution to match the resolution of our
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measurements. In the following, integral absorption cross-sections were calculated using the
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same 50 cm-1 intervals for both measured and literature spectra, and the difference taken in
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wavenumber space. A 5th-order polynomial was fit and used to interpolate the differences
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between integral values to the wavenumber scale of the 1 cm-1 resolution spectrum using spline
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interpolation, and the resulting polynomial was subtracted from the 12C spectrum to produce a
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baseline corrected absorption cross-section spectrum.
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A similar process was followed to correct the 13C glyoxal spectrum. After convoluting to
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0.3 nm, second-order spectral stretching and shifting were used to account for isotopic
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distortions to the locations of 13C absorption peaks compared to the Volkamer et al.19 spectrum.
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Isotope shifts caused residual structures during spectral fitting, and those parts of the spectrum
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with high residual structures were avoided during integration to perform the baseline correction;
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the point-to-point integration was performed only over wavelength segments where no
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significant glyoxal absorption was observed to determine the polynomial. A second-order
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polynomial was fit through the regions of low absorption to force the integral correction to be
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performed as similarly as possible to the 12C baseline correction described above. The corrected
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1 cm-1 resolution spectra span a wavenumber range from 23250-21250 cm-1 (430-470 nm).
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Simulation Chamber Experiments
Simultaneous detection of 12C and 13C glyoxal was tested from absorption spectra
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recorded at the simulation chamber located at the Paul Scherrer Institut in Villigen,
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Switzerland.10 Glyoxal was produced under high NOx conditions via the following reactions:
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R1: HONO + hν → OH + NO
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R2: C2H2 + O2 + OH → CHOCHO + OH
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Glyoxal is formed from acetylene (99% 13C acetylene, Aldrich, CAS 35121-31-4) with ~65%
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yield, the remaining 35% forming CO and formic acid.27
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The primary objective of these chamber experiments was to investigate SOA formation
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from glyoxal that will be described elsewhere.28 Here, we use two individual spectra recorded at
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PSI by the University of Colorado Light Emitting Diode Cavity Enhanced DOAS;25 one
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spectrum each from an experiment that used 12C acetylene and 13C acetylene (to form 12C and
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13
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and NO2, as well as water vapor. The chamber had a 5 week history of exposure only to 12C
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glyoxal (12C spectrum); the 13C glyoxal spectrum was recorded after two consecutive
C glyoxal), respectively. At the time of recording, the chamber contained few ppbv of glyoxal
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experiments and cleaning cycles using 13C acetylene.
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Sensitivity studies using synthetic and chamber spectra
The 12C and 13C cross-section spectra show significant differences in the position of the
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strong absorption feature near 455 nm. We performed sensitivity studies to evaluate the potential
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of spectral cross-correlations between 12C and 13C spectra in a DOAS retrieval, using the two
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spectra from chamber experiments and synthetic spectra with added noise that contain well-
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known mixtures of 12C and 13C glyoxal (see Supplemental Information for analysis of synthetic
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spectra). The conditions in the synthetic spectra resemble those of the chamber spectra with
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respect to species and concentrations of absorbers (SI text), i.e., the spectral fits included cross
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sections for O4,29 two NO2 cross sections (low and high concentration30), water,31 O3,32 12C
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glyoxal,19 13C glyoxal (this work), and a 4th order polynomial. The 12C and 13C cross sections
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were orthogonalized to minimize spectral cross-correlation using a routine for orthogonalization
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that is internal to WinDOAS and based on the Gram-Schmidt orthogonalization algorithm.33, 34
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The cross section of the isotope with the highest concentration was kept unchanged, i.e., the 13C
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spectrum was orthogonalized to the 12C spectrum in the 12C experiment (and 12C was
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orthogonalized in the 13C experiment) during spectral fitting. All cross sections were convolved
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to the spectrometer slit function (0.55 nm FWHM), and fitted simultaneously in the spectral
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window from 438-465 nm (‘standard’ glyoxal window).
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We performed sensitivity studies to understand the stability of the glyoxal retrieval with
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respect to variations of the fitted spectral window. These tests were conducted over a range of
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wavelengths using a step-form algorithm in which the same spectrum was analyzed multiple
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times.35 The upper and lower limits of the spectral range used for analysis were systematically
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varied for all spectral fit intervals 438-465 nm using interval steps of 0.5 nm; the width of the fit
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window thus varied between 2.5 and 27 nm. The results were calculated as a percent deviation
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from the fit in our standard fit window, since the true concentration of glyoxal is initially not
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known. However, this fit window is identical to that used to measure glyoxal during a detailed
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instrument comparison exercise (nine instruments, two separate simulation chambers), where
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CE-DOAS results obtained with a similar setup were found both precise and accurate.20
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3. Results and Discussion
The line positions of the rich rovibronic structure at visible wavelengths agree very well
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between the two 12C spectra (Figure 3a, c, see also supplementary information), indicating that
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the wavenumber calibration is well known (< 0.005 cm-1). A 13C shift is present near 455 nm
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(3b), but none is visible at 440 nm (3d). The consistency in transferring the calibration between
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the 12C and 13C cross section spectra was tested. Both spectra were convoluted to 0.3nm FWHM
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optical resolution, and the 13C cross section was fit to the 12C spectrum allowing for a second-
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order stretch and shift in wavelength. A fit factor of unity would indicate that the calibration
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from the high-resolution 12C spectrum19 was indeed successfully transferred. The observed fit
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factor was found to be 1.01 ± 0.04. Figure 3 compares the baseline corrected high-resolution
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absorption spectra recorded in this study (1 cm-1 resolution) to the literature cross-section (0.06
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cm-1 resolution).
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Contamination of the 12C spectrum with 13C glyoxal is not significant at the SNR
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explored here. Such glyoxal originates from acetylene that contains 13C in its natural 1.109%
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abundance; further 13C glyoxal forms from disubstituted 13C acetylene with an abundance of
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0.012% (1.109%2). For our spectra the optical density of the averaged 12C and 13C glyoxal
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spectrum is smaller 10% (base e), and we expect the 13C glyoxal contribution to the 12C spectrum
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to be ~2 orders of magnitude smaller than the noise level of our measurements. The absorption
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of strong 12CHO13CHO lines would thus be near or below the noise level of our measurements.
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Some of the stronger absorption lines of 12CHO13CHO are probably visible at the higher
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resolution and SNR used to record the 12C literature spectrum.19 However, the absorption
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spectrum of 12CHO13CHO is currently unmeasured to investigate this further. We consider our
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12
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glyoxal. 12CHO13CHO further does not present an error for the calibration of our 13C spectrum as
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natural abundance of 13C glyoxal is accounted by the pressure measurement that underlies the
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calibration of the literature spectrum.19
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C spectrum to be free of any obvious absorption features of mono- and/or di-substituted 13C
The isotopic shift is dictated by symmetry elements and the involvement of carbon in a
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particular rovibronic effects. The observed isotopic shifts were not uniform throughout the
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observed range (Table 1). The maximum shift is observed near 455 nm, and at 440 nm no shift is
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discernible within measurement precision. This lends added importance to the decision about the
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wavelength range selection for DOAS retrievals. Birss et al.17, 18 provide evidence for isotopic
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shifts in glyoxal through their examination of bending and stretching modes in the visible range.
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In combination with deuterated and 18O enriched forms of glyoxal, 13C glyoxal has been used to
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determine the geometry of the glyoxal molecule.18 However, their work does not provide a
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quantitative cross-section, which is required for calibration. The active stretch at 440 nm, the v8
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H-wagging mode, undergoes a large shift in frequency from the ground state to the electronic
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state (from 1048 cm-1 to 742 cm-1 for the 12C isotopomer).
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Figure 3: a) Match between 12C glyoxal measured in this work and high-resolution measurement
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of Volkamer et al.,19 including at 455 nm b) shifted absorption cross section of 13C glyoxal (red)
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near 455nm c,d) No shift is apparent at 440 nm.
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Table 1: Wavelength dependent isotope shifts of 12C and 13C absorption lines
Line Position
12
C (nm)
436.386
440.267
444.903
453.018
455.145
C (cm-1)
22915.5
22713.5
22476.8
22074.2
21971.0
C (nm)
436.441
440.257
444.761
452.761
454.856
C (cm-1)
22912.6
22714.0
22484.0
22086.7
21985.0
∆λ (nm)
-0.055
0.010
0.142
0.257
0.289
∆ν (cm-1)
2.9
-0.5
-7.2
-12.5
-14
12
13
13
Line Shift
(12C-13C)
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Because this mode is not infrared active as a result of its symmetry, the frequency of this
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mode in the ground state for the 13C isotopomer is not known. However, we can infer from the
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visible spectrum that the frequency in the ground state must be about 1006 cm-1. When combined
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with the frequency of 729 cm-1 in the upper electronic state, this produces a smaller shift than in
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12
C, hence the coincidence of the bands.
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Spectral proof of fits from the chamber experiments are shown in Figure 4. Panel A has
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fits for the 12C experiment (Exp 15) and panel B has fits from the 13C acetylene experiment (Exp
260
17). The top row shows the residual, or the leftover noise after the polynomial and all other
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scaled cross sections have been subtracted. The RMS of the residual is compatible with photon
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counting statistics here, indicating the lack of unaccounted absorption features. The second row
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shows 12C glyoxal for Exp 15 and 12C orthogonalized to 13C for Exp 17, and the third row shows
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13
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much higher for 12C in Exp 15 than for 13C in Exp 17, showing that even at this moderately high
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resolution18 (0.55 nm FWHM), we are able to successfully differentiate both isotopes. There is
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likely a small amount of 12C contamination in this experiment, but not enough to be significant
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outside of the 3σ range. The lowest row shows NO2 (the sum of the high concentration cross
269
section and low concentration cross section), and illustrates that two isotopes can be
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differentiated well even in the presence of other trace gases that absorb at the same wavelength.
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Interestingly, tests using synthetic spectra showed that the selectivity of the detection does not
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suffer much, even at much lower resolution (SI text). The orthogonalized 13C cross section is
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zero within 3σ fit error for Exp 15, when the chamber had not been exposed to 13C glyoxal in
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prior experiments. Any chamber background is expected to be 12C glyoxal. Experiment 16 was a
C glyoxal orthogonalized to 12C for Exp 15 and 13C glyoxal for Exp 17. The optical density is
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16 are expected to be 13C glyoxal. The orthogonalized cross section in this experiment contains
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information about the amount of 12C glyoxal, and again it is not different from zero within 3σ fit
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error.
C experiment, so glyoxal generated during Exp 17, and residual glyoxal carried over from Exp
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Figure 4: Spectral proof of the selective detection of 12C and 13C glyoxal. Panel A: Exp 15
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(12C experiment). Panel B: Exp 17 (13C glyoxal experiment). Dashed lines in orthogonal
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spectra show cross section enlarged and offset to show detail.
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Figure 5 shows sample wavelength-range sensitivity tests in which the upper and lower
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bounds of the fitted region were varied systematically for the chamber spectra. The green area in
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the graph indicates fit-windows that reproduce glyoxal results consistent with our standard fit
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Figure 5: Sensitivity tests using chamber spectra to assess the stability of typical DOAS
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retrievals for a fit window with a given upper and lower limit. The percent difference from the fit
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in the standard 438-465 nm window is shown for : A) 12C in the spectrum from the 12C
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experiment, B) 13C orthogonalized to 12C in the 12C experiment, C) 12C orthogonalized to 13C in
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the 13C experiment, and D) 13C in the 13C experiment.
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The non-orthogonalized spectra (panels A and D) show stable fits over large regions, i.e.,
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fit windows that contain the weak glyoxal band at 440 nm, the strong glyoxal band at 455 nm, or
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both. This is expected, as these are the regions with the largest differential cross sections.
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Outside of these regions, the fit becomes unstable as it changes rather erratically from a higher
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concentration than the standard fit to lower concentrations than the standard fit. The
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orthogonalized cross sections (panels B and C) are non-zero in the vicinity of both the weak
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bands and the strong bands. The greatest selectivity, however, is observed when the strong band
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is included in the fit. Variation is minimized when the fit window extends beyond 455 nm. The
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differential cross-section of the orthogonalized 13C cross-section near 455nm is 2.7×10-19
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cm2/molec, compared to 5.3×10-19 cm2/molec of the 12C spectrum at 0.55 nm FWHM optical
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resolution. This orthogonal cross-section suggests that online CE-DOAS measurements should
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be able to distinguish both isotopes rather well. In practice, a slightly negative offset is observed
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for 13C glyoxal during Exp 15, while no such offset was observed for 12C glyoxal during Exp 17
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(Fig. 4). A CE-DOAS instrument with ~10 pptv detection limit for glyoxal, can thus selectively
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measure 13C glyoxal with a detection limit of ~20 pptv; however, the accuracy of 13C glyoxal
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measurements is conservatively estimated to be on the order of 200 pptv.
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The analysis of mixtures of 12C and 13C glyoxal in the synthetic spectra with added noise
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give accurate results within 3σ fit error when the strong and/or weak bands at 440 nm and ~455
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nm are fitted simultaneously. A robust retrieval is observed over a wide range of optical
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resolutions and noise conditions (SI text). Introducing different forms of noise (structured and
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white noise) in the synthetic spectra does not significantly seem to affect the selectivity in the 12C
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and 13C glyoxal detection. Including NO2 absorptions, which are located at similar wavelengths,
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in the synthetic spectra caused only insignificant perturbations in the overall amount of glyoxal
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and the individual amounts of 12C and 13C glyoxal that were detected. Including water vapor in
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the synthetic spectra had no noticeable effect.
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4. Conclusions
Visible absorption spectra of 12C and 13C glyoxal were collected at moderately high
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resolution. A significant isotope shift was detected at the 455 nm strong band, but not at 440nm,
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suggesting that the two isotopes of glyoxal have sufficiently different spectra to facilitate
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separation by means of in situ Cavity Enhanced DOAS. This was confirmed for two laboratory
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spectra recorded at moderately high optical resolution from experiments using 12C and 13C
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glyoxal, as well as numerous synthetic spectra which simulated mixtures of both compounds.
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5. Acknowledgements
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EMW, TKK, and RMV acknowledge funding from Eurochamp proposal E2-2013-04-10-0088 to
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record the spectra at PSI. The authors thank the entire PSI team, especially Jay Slowik, Nivedita
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Kumar, Felix Klein, Andre Prevot, and Urs Baltensperger for access to the PSI chamber facility.
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6. Supporting Information Available
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Supplemental information is provided on work done with synthetic spectra containing both 12C
338
and 13C glyoxal. This information details the creation of synthetic spectra with a range of 12C
339
and 13C concentrations. It includes sensitivity studies performed on the effect of optical
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(instrumental) resolution, fit range, and deviation from known (input) concentration. This
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material is available free of charge via the Internet at http://pubs.acs.org.
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References
360
2063-2101.
361
2.
362
Yarwood, G., The mechanisms of atmospheric oxidation of the alkenes. Oxford Univ. Press: New
363
York, 2000; Vol. 5.
364
3.
365
G., The mechanisms of atmospheric oxidation of the aromatic hydrocarbons. Oxford Univ.
366
Press: New York, 2002.
367
4.
368
Atmospheric Photooxidation Products: Evidence for Biogenic and Anthropogenic Sources. J.
369
Geophys. Res. 2003, 108, 4247.
370
5.
371
glyoxal as an indicator for fast VOC chemistry in urban air. Geophys. Res. Lett. 2005, 32.
372
6.
373
Volkamer, R.; Burrows, J.; Kanakidou, M., The influence of natural and anthropogenic
374
secondary sources on the glyoxal global distribution. Atmos. Chem. Phys. 2008, 8, 4965-4681.
375
7.
376
of atmospheric glyoxal and methylglyoxal, and implications for formation of secondary organic
377
aerosols. J. Geophys. Res.-Atmos. 2008, 113.
378
8.
379
of oxidized volatile organic compounds during the OH radical initiated oxidation of isoprene,
1.
Atkinson, R., Atmospheric chemistry of VOCs and NOx. Atmos. Environ. 2000, 34,
Calvert, J.; Atkinson, R.; Kerr, J.; Madronich, S.; Moortgat, G.; Wallington, T.;
Calvert, J.; Atkinson, R.; Becker, K.; Kamens, R.; Seinfeld, J.; Wallington, T.; Yarwood,
Spaulding, R.; Schade, G.; Goldstein, A.; Charles, M., Characterization of Secondary
Volkamer, R.; Molina, L.; Molina, M.; Shirley, T.; Brune, W., DOAS measurement of
Myriokefalitakis, S.; Vrekoussis, M.; Tsigaridis, K.; Wittrock, F.; Richter, A.; Bruehl, C.;
Fu, T.; Jacob, D.; Wittrock, F.; Burrows, J.; Vrekoussis, M.; Henze, D., Global budgets
Galloway, M.; Huisman, A.; Yee, L.; Chan, A.; Loza, C.; Seinfeld, J.; Keutsch, F., Yields
19
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1
2
3
4
5
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7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
Page 20 of 24
380
methyl vinyl ketone, and methacrolein under high-NOx conditions. Atmos. Chem. Phys. 2011,
381
11, 10779-10790.
382
9.
383
Acetylene (C2H2): seed effect on SOA yields due to organic photochemistry in the aerosol
384
aqueous phase. Atmos. Chem. Phys. 2009, 9, 1907-1928.
385
10.
386
A.; Baltensperger, U.; Hoffmann, T.; Volkamer, R., Effective Henry's Law Partitioning and the
387
Salting Constant of Glyoxal in Aerosols Containing Sulfate. Environ. Sci. Technol. 2013, 47,
388
4236-4244.
389
11.
390
Madronich, S.; Volkamer, R., Secondary organic aerosol formation from semi- and intermediate-
391
volatility organic compounds and glyoxal: Relevance of O/C as a tracer for aqueous multiphase
392
chemistry. Geophys. Res. Lett. 2013, 40, 978-982.
393
12.
394
Matter: Identification of Acetals and Sulfate Esters. Environ. Sci. Technol. 2005, 39, 1532-1541.
395
13.
396
A missing sink for gas-phase glyoxal in Mexico City: Formation of secondary organic aerosol.
397
Geophys. Res. Lett. 2007, 34.
398
14.
399
Glyoxal uptake on ammonium sulphate seed aerosol: reaction products and reversibility of
400
uptake under dark and irradiated conditions. Atmos. Chem. Phys. 2009, 9, 3331-3345.
401
15.
402
T.; Daniels, M.; Ball, S.; Goodall, I.; Monks, P.; Borrás, E.; Muñoz, A., Online and offline mass
Volkamer, R.; Ziemann, P.; Molina, M., Secondary Organic Aerosol Formation from
Kampf, C.; Waxman, E.; Slowik, J.; Dommen, J.; Pfaffenberger, L.; Praplan, A.; Prevot,
Waxman, E.; Dzepina, K.; Ervens, B.; Lee-Taylor, J.; Aumont, B.; Jimenez, J.;
Liggio, J.; Li, S.-M.; McLaren, R., Heterogeneous Reactions of Glyoxal on Particulate
Volkamer, R.; San Martini, F.; Molina, L. T.; Salcedo, D.; Jimenez, J. L.; Molina, M. J.,
Galloway, M.; Chhabra, P.; Chan, A.; Surratt, J.; Flagan, R.; Seinfeld, J.; Keutsch, F.,
Hamilton, J.; Baeza-Romero, M.; Finessi, E.; Rickard, A.; Healy, R.; Peppe, S.; Adams,
20
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9
10
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12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
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42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
The Journal of Physical Chemistry
403
spectrometric study of the impact of oxidation and ageing on glyoxal chemistry and uptake onto
404
ammonium sulfate aerosols. Faraday Discuss. 2013, 165, 447-472.
405
16.
406
Analysis of photochemical and dark glyoxal uptake: Implications for SOA formation. Geophys.
407
Res. Lett. 2011, 38.
408
17.
409
Ramsay, D.; Watmann, L., 4550 Å band system of glyoxal .2. vibration-rotational analyses for
410
12 bands of C2H2O2. Can. J. Phys. 1970, 48.
411
18.
412
Ramsay, D.; Szyszka, J., 4550 Å band system of glyoxal .4. vibration-rotational analyses for 11
413
bands of (C2H2O2)-C-13 and determination of molecular geometries. Can. J. Phys. 1977, 55,
414
390-395.
415
19.
416
of glyoxal in the UV-vis and IR spectral ranges. J. Photochem. Photobiol. A: Chem. 2005, 172,
417
35-46.
418
20.
419
Karl, T.; Keutsch, F.; Kim, S.; Mak, J.; Monks, P.; Muñoz, A.; Orlando, J.; Peppe, S.; Rickard,
420
A.; Ródenas, M.; Sánchez, P.; Seco, R.; Su, L.; Tyndall, G.; Vásquez, M.; Vera, T.; Waxman, E.;
421
Volkamer, R., Instrument inter-comparison of glyoxal, methyl glyoxal and NO2 under simulated
422
atmospheric conditions. Atmos. Meas. Tech. Discuss. 2014, 7, 8581-8642.
423
21.
424
M.; Moortgat, G.; Wine, P.; Huie, R.; Orkin, V., JPL Publication 10-6: Chemical Kinetics and
Galloway, M.; Loza, C.; Chhabra, P.; Chan, A.; Yee, L.; Seinfeld, J.; Keutsch, F.,
Birss, F.; Brown, J.; Cole, A.; Lofthus, A.; Krishnam, S.; Osborne, G.; Paldus, J.;
Birss, F.; Braund, D.; Cole, A.; Engleman, R.; Green, A.; Japar, S.; Nanes, R.; Orr, B.;
Volkamer, R.; Spietz, P.; Burrows, J.; Platt, U., High-resolution absorption cross-section
Thalman, R.; Baeza-Romero, M.; Ball, S.; Borrás, E.; Daniels, M.; Goodall, I.; Henry, S.;
Sander, S.; Friedl, R.; Abbatt, J.; Barker, J.; Burkholder, J.; Golden, D.; Kolb, C.; Kurylo,
21
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1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
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43
44
45
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48
49
50
51
52
53
54
55
56
57
58
59
60
Page 22 of 24
425
Photochemical Data for Use in Atmospheric Studies: Evaluation Number 17. In NASA, Ed.
426
Pasadena, California, 2011.
427
22.
428
Wagner, G., Simultaneous Global Observations of Glyoxal and Formaldehyde from Space.
429
Geophys. Res. Lett. 2006, 33, L16804.
430
23.
431
initiated oxidation of acetylene. J. Phys. Chem. 1991, 95, 7330-7337.
432
24.
433
diode sources. Rev. Sci. Instrum. 2011, 82.
434
25.
435
measure iodine oxide, glyoxal, methyl glyoxal, nitrogen dioxide, water vapour and aerosol
436
extinction in open cavity mode. Atmos. Meas. Tech. 2010, 3, 1797-1814.
437
26.
438
absorption cross-sections of NO2 in the 250-800 nm region measured by Fourier-transform
439
spectroscopy. J. Photochem. Photobiol. A: Chem. 2002, 149, 1-7.
440
27.
441
reaction of OH (OD) radicals with acetylene, propyne, and 2-butyne in air at 297 +/- 2 K. J.
442
Phys. Chem. 1986, 90, 173-178.
443
28.
444
Prevot, A. S. H.; Baltensperger, U.; Noziere, B.; Dommen, J.; Volkamer, R., Effect of Ammonia
445
on Glyoxal SOA in Inorganic Aqueous Seed Particles. Manuscript in preparation 2015.
Wittrock, F.; Richter, A.; Burrows, J.; Kanakidou, M.; Volkamer, R.; Beirle, S.; Platt, U.;
Yarwood, G.; Peng, N.; Niki, H., FTIR study of the mechanism of the Cl and Br atom
Bhosale, J., High signal-to-noise Fourier transform spectroscopy with light emitting
Thalman, R.; Volkamer, R., Inherent calibration of a blue LED-CE-DOAS instrument to
Voigt, S.; Orphal, J.; Burrows, J., The temperature and pressure dependence of the
Hatakeyama, S.; Washida, N.; Akimoto, H., Rate constants and mechanisms for the
Waxman, E.; Laskin, A.; Slowik, J.; Maxut, A.; Wang, S.; Yu, J.; Koenig, T.; Laskin, J.;
22
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Page 23 of 24
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9
10
11
12
13
14
15
16
17
18
19
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45
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50
51
52
53
54
55
56
57
58
59
60
The Journal of Physical Chemistry
446
29.
447
O2 Collision Pairs between 340 and 630 nm at Atmospherically Relevant Pressure. Phys. Chem.
448
Chem. Phys. 2013, 15, 15371-15381.
449
30.
450
Jenouvrier, A.; Coquart, B., High-resolution Fourier transform measurement of the NO2 visible
451
and near-infrared absorption cross sections: Temperature and pressure effects. J. Geophys. Res.-
452
Atm. 2002, 107, ACH 3-1-ACH 3-12.
453
31.
454
Chackerian, C.; Chance, K.; Coudert, L.; Dana, V.; Devi, V.; Flaud, J.; Gamache, R.; Goldman,
455
A.; Hartmann, J.; Jucks, K.; Maki, A.; Mandin, J.; Massie, S.; Orphal, J.; Perrin, A.; Rinsland,
456
C.; Smith, M.; Tennyson, J.; Tolchenov, R.; Toth, R.; Vander Auwera, J.; Varanasi, P.; Wagner,
457
G., The HITRAN 2004 molecular spectroscopic database. J. Quant. Spectrosc. Radiat. Transfer.
458
2005, 96, 139-204.
459
32.
460
Hartmann, M.; Kromminga, H.; Bovensmann, H.; Frerick, J.; Burrows, J., Measurements of
461
molecular absorption spectra with the SCIAMACHY pre-flight model: instrument
462
characterization and reference data for atmospheric remote-sensing in the 230-2380 nm region. J.
463
Photochem. Photobiol. A: Chem. 2003, 157, 167-184.
464
33.
465
Ann. Math. Stat. 1935, 6, 53-75.
466
34.
467
for Space Aeronomy: Brussels, Belgium, 2001.
Thalman, R.; Volkamer, R., Temperature Dependant Absorption Cross-Sections of O2-
Vandaele, A.; Hermans, C.; Fally, S.; Carleer, M.; Colin, R.; Mérienne, M.-F.;
Rothman, L.; Jacquemart, D.; Barbe, A.; Benner, D.; Birk, M.; Brown, L.; Carleer, M.;
Bogumil, K.; Orphal, J.; Homann, T.; Voigt, S.; Spietz, P.; Fleischmann, O.; Vogel, A.;
Wong, Y., An Application of Orthogonalization Process to the Theory of Least Squares.
Fayt, C.; van Roozendael, M., WinDOAS 2.1, Software User Manual. In Belgian Institute
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to visualize the impact of the spectral retrieval range on differential optical absorption
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spectroscopy evaluations. Atmos. Meas. Tech. 2013, 6, 275-299.
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