A2 Bioengineering Topics 2 38 Disclaimer—This paper partially fulfills a writing requirement for first year (freshman) engineering students at the University of Pittsburgh Swanson School of Engineering. This paper is a student, not a professional, paper. This paper is based on publicly available information and may not provide complete analyses of all relevant data. If this paper is used for any purpose other than these authors’ partial fulfillment of a writing requirement for first year (freshman) engineering students at the University of Pittsburgh Swanson School of Engineering, the user does so at his or her own risk. CRISPR-CAS9: A REVOLUTIONARY CANCER TREATMENT Elliott Hammersley, [email protected], Sanchez 5:00, Claire Kraft, [email protected], Mena Lora 1:00 Abstract- This paper primarily addresses the next step in cancer treatment: the use of clustered regularly interspaced short palindromic repeats (CRISPR) and a Cas9 protein complex in cancer treatment. Other topics covered in this paper include background history of the CRISPR-Cas9 system, a detailed explanation of recent developments in CRISPR-Cas9 technology, discussion of clinical trials, proposed experiments, financial sustainability, life-saving potential, and related ethical issues. Originally a bacterial defense mechanism, CRISPR has been converted into a technology that can edit the genome of any organism by removing and replacing DNA strands. CRISPR-Cas9 is highly programmable, allowing scientists to selectively create double-stranded breaks in DNA and remove mutations or otherwise detrimental sequences. Scientists are then able to repair those breaks with manufactured DNA. The primary application discussed in this paper is the use of CRISPR-Cas9 to replace three specific genes in human T cells. These three edits work in conjunction to improve the immune cell’s ability to locate cancerous cells, as well aim to boost its resiliency. Overall, CRISPR-Cas9 engineered T cells are providing the means for a monumental step forward in the war against cancer. Key words—cancer, cancer treatments, clinical trials, CRISPR-Cas9, gene editing, sustainability, T cells ENGINEERING WITH CRISPR-CAS9 Until recently, researchers could modify the genes of only plants and animals, resulting in what are commonly referred to as genetically modified organisms (GMOs). Now, the clustered regularly interspaced short palindromic repeats (CRISPR) and CRISPR-associated protein (Cas9)— commonly referred to as the genome-editing tool CRISPRCas9—promise to simplify genetic engineering, healthcare, and the human genome. Their potential to halt the proliferation of viruses and cancer is opening new frontiers for exploration in medicine, therapy, and engineering. One of the newest relevant uses of this technology is in identifying potential avenues of eradication for the Zika and Dengue viruses. CRISPR-Cas9 enabled scientists to identify human proteins that the viruses need to reproduce, which likely will University of Pittsburgh, Swanson School of Engineering 1 Submission date: 03.31.2017 lead to development of vaccinations and treatments for these two dangerous and costly diseases. In addition, CRISPR-Cas9 is on the verge of clinical trials for use in the fight against cancer. As mentioned in an article about CRISPR pioneers in Time Magazine, CRISPR is being used to edit the DNA of T cells, a type of immune cell that locates and destroys infected cells directly within an organism. The edited sections of DNA in the T cell are responsible for the efficacy in targeting tumors and allow the T cells to effectively attack cancerous cells [1]. If the trials succeed, use of CRISPR-Cas9 on a larger scale is imminent, particularly as a replacement for outdated and often insufficient cancer treatments. THE INSUFFICIENCY OF CURRENT CANCER TREATMENTS Understanding the deficiencies of current cancer treatments requires examining their numerous side effects and economic impacts. The treatments available, although they provide a relatively high average success rate of 62%, as calculated by the American Cancer Society, come with a plethora of taxing side effects and exorbitant expenses for patients and their families [2]. Treatments and Side Effects Cancer is one of the most prolific diseases of this age. The American Cancer Society estimates that in 2017 alone nearly 1.7 million Americans will be diagnosed with cancer, and roughly 600,000 Americans will die from a previously diagnosed case [2]. The most common treatments—surgery, chemotherapy, and radiation therapy, according to the National Cancer Institute at the National Institutes of Health—provide an opportunity for cancer patients to be cured or at least relieved of symptoms [3]. The goal of using surgery is to remove the tumor entirely, remove part of the tumor so other treatments can work more effectively against the cancer, or reduce the symptoms of the cancer. However, as with many treatments, surgery involves side effects and risks. For example, most people treated surgically experience pain and a higher risk of infection afterward. Other complications can include internal bleeding, harm to tissue Elliott Hammersley Claire Kraft surrounding the incision site and the site of the cancer, and adverse reactions to general anesthetics [3]. Both chemotherapy and radiation therapy are used to cure cancer, curtail its growth, prevent its relapse, and reduce its symptoms. They share some side effects, such as damage to nearby cells, fatigue, nausea, and hair loss [3]. Patients subjected to chemotherapy or radiation therapy run the risk of long-term side effects, as well. As reported by Susan Scutti, a correspondent for Medical Daily and Newsweek, in an article on childhood cancer survivors, the primary cause of the longterm side effects is damage to DNA in healthy cells surrounding the tumor site. The major long-term consequences include cardiovascular complications, cognitive and physical growth impairments, and secondary cancer caused by the early DNA damage rather than metastasis (spreading) from the original tumor. Malignant conditions arise years later because, in most cases, the DNA damage goes undetected [4]. While these side effects often emerge in adults, most result from treating childhood cancers. Dr. Gregory Armstrong, a member of the Department of Epidemiology and Cancer Control at St. Jude Children’s Research Hospital, noted that, thirty years after recovery from childhood cancer, nearly 20% of survivors face a second bout with cancer. He added that “childhood cancer survivors are 15 times more likely to die from a second cancer than the general population dying from any cancer” [4] because of the damage suffered by surrounding tissues during chemotherapy and radiation therapy. New cancer treatments in the works aim to reduce the costs, both biologically and financially, affiliated with current treatments. HISTORY OF CRISPR-CAS9 CRISPR-Cas9, a protein-based system that operates using a section of repeating DNA, originated in the genome of ancient bacteria, but it was not internationally recognized as a revolutionary genome-editing technology until recently, as explained in an interview for National Public Radio by Michael Specter, a science and technology staff writer for The New Yorker. In 1987, Japanese scientists noticed a strange group of nucleotides in segments of DNA and, although they did not know what it was or how it functioned, they published their findings in the Journal of Bacteriology to inform the scientific community of their discovery. Then, about ten years later, at a Dannon yogurt factory, researchers noticed some of their bacterial colonies died faster than others. Dannon scientists analyzed several samples and observed the difference between the living and the dying: bacteria that lived had short palindromic segments of DNA—repeating sequences of nucleotides—at a locus (specific location) in their genome. However, it was not until several years later, when Spanish biostatistician Dr. Francisco Mojica ran a computer analysis of all known proteins, that a definitive hypothesis emerged [8]. Mojica realized the DNA segments were pieces of viruses, and the bacteria were using them as a sort of adaptive immune system to identify and effectively fight viral infections. The bacterial cells took in the DNA, spliced it using proteins, and inserted it into their own DNA to be stored as an encyclopedia of previous virulent attackers. The bacteria then passed the viral DNA encyclopedia to its progeny as part of its inherited genetic material. Because of this monumental finding, CRISPR science began to evolve quite rapidly. After understanding that CRISPR was used by bacteria as a locater for specific DNA sequences, scientists homed in on the possibility of manually programming the system. Detailed in a profile by New York Times biotechnology reporter Andrew Pollack, it was not until this application came to light that Dr. Jennifer Doudna’s work at the University of California, Berkeley, came to prominence [9]. A professor in molecular biology, cell biology, and chemistry, Doudna and her colleague, Dr. Emmanuelle Charpentier, manipulated various pieces of CRISPR-Cas9 in an attempt to effectively program it. The idea was to be able to insert any RNA sequence into the CRISPR system, have it seek out the matching DNA sequence, and then replace it with a new piece of DNA. Finally, after decades of research and development by numerous renowned scientists, Doudna and her associates had a breakthrough: they adapted the CRISPR-Cas9 system as a research tool by using laboratory-engineered RNA and proposed it as a method to edit the human genome. In June of 2012, the publication Science detailed the technique used by Doudna and how it was destined to revolutionize the geneediting world [9]. Economic Impact While a variety of side effects can accompany surgery, chemotherapy, and radiation therapy, there is another harsh reality associated with cancer treatment. According to John Seffrin, CEO of the American Cancer Society, in an interview with CNN, 20% of people with health insurance cannot afford the cancer therapy necessary to save their lives [5]. For those who can afford it, according to the U.S. News and World Report, the average cost of cancer treatment is $10,000 per month, with some new therapies topping $30,000 monthly. Furthermore, there is an additional financial burden linked to these expensive treatments: patients must pay for still more drugs to mitigate the harsh side effects of surgery, chemotherapy, and radiation therapy [6]. The cost-effectiveness of current cancer treatments was evaluated in a study completed by Harvard University, the National Cancer Institute, and the National Bureau of Economic Research. The study estimated that, split between healthcare providers and the afflicted, the average cost of an additional year of life for localized and metastatic (spreading) cancer patients is $403,142 and $1,190,332 respectively [7]. When considering the overall cost, it becomes apparent that a more inexpensive treatment than current methods must be developed. 2 Elliott Hammersley Claire Kraft STRUCTURE AND FUNCTION A CRISPR-Cas9 complex is composed of two components: CRISPR and Cas9. Their functionality depends on the organism in which they are placed. In bacteria, they function together as a defense system to identify viral DNA, cut it into segments, and insert it into the genes of the bacterial host, so the viral DNA can be stored for reference. In human DNA, CRISPR and Cas9 work as a genome-editing system. In the human genome, engineered DNA is identified by Cas9 and inserted into the existing strand of DNA at the CRISPR locus, effectively editing the human genes. To properly understand the functionality of a CRISPR-Cas9 complex, it is important to differentiate between the intricate structure and function of each of its constituent parts [8]. FIGURE 1 [11] Difference between CRISPR in bacteria and CRISPR genome editing in humans with highlighted PAM sequence. CRISPR Component In bacteria, CRISPR is a gene location that serves as a storage site for viral DNA. As explained in a case study of CRISPR gene editing in Cryptococcus neoformans, the gene locus contains a long string of repeated DNA sequences that act as spacers between inserted foreign DNA. Viral DNA is recognized in the cell because of Protospacer Adjacent Motif (PAM) sequences, which are small sections of DNA—usually three base pairs in length—found in all viral DNA. The typical composition of PAM is any base (adenine, cytosine, thymine, or guanine) followed by two guanine nucleotides. Once the CRISPR-associated (Cas) proteins identify DNA as foreign, they copy the DNA between twenty-four and fortyeight base pairs downstream of the PAM sequence and place it into the CRISPR site between two palindromic repeats of approximately thirty base pairs each [10]. In human DNA, the CRISPR component of CRISPRCas9 is a gene locus, but it does not contain the palindromic repeats, which are specific to bacteria. Rather, CRISPR serves as a target site for implanting engineered genes. Cas9 creates a double-stranded break at the CRISPR locus before introducing the selected and engineered DNA, which contains an embedded PAM sequence. Figure 1, taken from the Howard Hughes Medical Institute, shows the difference between the CRISPR defense system in bacteria and targeted CRISPR edits in humans. Cas9 Component The Cas9 protein is responsible for locating and cleaving target DNA, both in natural and artificial CRISPRCas9 systems. According to a CRISPR-Cas9 website by Tufts University, Cas9 consists of six specific regions that each play a different functional role: REC1, REC2, Bridge Helix, PAM Interacting, RuvC, and HNH. The REC1 domain is the largest and is responsible for binding guide RNA, a single-stranded copy of a DNA sequence. This segment of genetic code is used to locate the piece of host DNA that is targeted for replacement. While the REC2 domain’s function is still not well understood, it appears to have a distinct function from the other regions in Cas9. The PAM Interacting region specifically examines DNA until it reaches the PAM sequence, which, in humans, corresponds to where replacement will begin. RuvC nuclease is a domain that initiates the cutting of the DNA strand that is not complementary to the guide RNA. HNH nuclease is responsible for cutting the other strand of DNA, which is complementary to the guide RNA [12]. While all domains have a separate structure and function, they all work in concert to locate and cut targeted DNA strands. Figure 2, from Tufts University, depicts the location and approximate shape of each part of Cas9. 3 Elliott Hammersley Claire Kraft from human to mosquito and from mosquito to human, allowing wider spread of Dengue with travel and shipping. Now, nearly half of the global population lives in areas where there is a risk of contracting Dengue, and there are over 20,000 deaths from Dengue every year, most of them children. No treatments or vaccines for Dengue are available [14]. With only a few proteins of their own, the Zika and Dengue viruses can commandeer a host cell’s proteins and resources to grow and replicate, as discussed in an article published by the University of Massachusetts Medical School in ScienceDaily. The human proteins used by Zika and Dengue remained a mystery prior to a breakthrough made possible with the use of CRISPR-Cas9 and pioneered by a team led by Abraham Brass, MD, PhD, at the University of Massachusetts Medical School. With the help of his team, Dr. Brass developed and tested the first CRISPR-Cas9 screen to identify human proteins that the Zika and Dengue viruses need for replication [15]. Because of this discovery, a vaccine for these two prolific viruses may be available soon. FIGURE 2 [12] The six domains of the Cas9 protein shown in schematic, crystal, and map form. Lyme Disease PREVIOUSLY DEVELOPED APPLICATIONS In Nantucket, Dr. Kevin Esvelt, a biochemist from Harvard University, proposed a solution for dealing with Lyme disease, which is a major problem on the island and is swiftly making its way through the continental United States. Approximately 40% of the island’s residents have been infected, a number that is rapidly increasing. While many people believe ticks are the source of Lyme disease, they are merely an intermediary. Since the virus originates in whitefooted mice, Esvelt plans to focus on using CRISPR-Cas9 to edit the genome of the mice and halt transmission. Nantucket’s geographic isolation provides a controlled environment and negligible chance of external interference. If Esvelt’s team receives the green light from Nantucket residents, it will breed a large number of mice that are immune to Lyme disease and release them into the wild to create a gene drive. Because ethical concerns could arise from his proposal, Esvelt has agreed to proceed with his experiment only as long as the community continues to show support [8]. As discussed by Michael Specter in an article on CRISPR gene editing for The New Yorker, a gene drive nullifies the rules of traditional Mendelian inheritance. Normal inheritance dictates that the offspring of any sexuallyreproduced organism receives half its genome from each parent. However, since the 1940s, scientists have known that some genes are more dominant than others; they have better than a 50% chance of being inherited [16]. Taking advantage of this gene trait, scientists will use CRISPR-Cas9 to edit the DNA of parent organisms and ensure the edited gene will spread through the white-footed mouse population. This application of CRISPR-Cas9 technology has the potential to end a disease that currently has no vaccine or precautionary treatment. According to an article in Oxford Academic, a peer-reviewed journal, CRISPR-Cas9 has also proven In the last fifteen years, CRISPR-Cas9 funding and application have increased dramatically, and, consequently, new possibilities and ideas have emerged. Some of the most recent proposals and uses include eradication of viruses and revolutionary cancer treatments. Furthermore, progress has been made with genomic maladies such as Huntington’s disease and sickle-cell anemia. Most recently, a proposal arose to use CRISPR-Cas9 in treating Lyme disease. These applications, in addition to aiding in the eradication and treatment of diseases, will alter both the economic and ecological footprints of these maladies. Zika and Dengue According to the Centers for Disease Control and Prevention (CDC), Zika, first isolated from a macaque in Africa, suddenly emerged in Micronesia in 2007, rapidly expanded into Southeast Asia, and then into Brazil by May 2015. Several severe risks are associated with Zika, including serious birth defects and pregnancy complications. Zika is transferrable through bodily fluids and mosquitoes. Mosquito-borne Zika is preventable but is immune to all treatments attempted. As a result, the World Health Organization declared it a public health emergency in February of 2016[13]. Dengue originally was found only in Africa and Southeast Asia, as stated in another article by the CDC. However, with the increased shipping of cargo during World War II in the mid-1900s, the virus spread, carried by mosquitoes in the cargo. The virus is transferred repeatedly 4 Elliott Hammersley Claire Kraft effective with many other ailments, such as Huntington’s disease and sickle-cell anemia, and has immense promise for cancer treatments [17]. APPLICATIONS IN CANCER A key objective in the fight against cancer is enabling the human body to defend itself without using powerful drugs or invasive procedures. CRISPR-Cas9 provides a way to better equip the body for this fight using the patient’s own immune cells, specifically T cells, to attack malignant tumors. According to Nature International Weekly Journal of Science and Genetic Engineering & Biotechnology News, there are currently two major players in this type of CRISPR-Cas9 implementation: Dr. Carl June, director of translational research and a professor of pathology and laboratory medicine in the University of Pennsylvania’s Abramson Cancer Center and Perelman School of Medicine, and Dr. Michel Sadelain, director of the Center for Cell Engineering at the Memorial Sloan Kettering Cancer Center. These two researchers are using distinctly separate CRISPR-edited T cell engineering methods to combat cancer. However, both types of edited T cells will be able to evade detection by cancer cells, allowing them to effectively attack and destroy the disease and help patients avoid the majority of side effects that result from current cancer treatments [21][22]. Economic and Environmental Impact CRISPR-Cas9 applications in Zika, Dengue, and Lyme disease have the potential to reduce the total cost of these diseases, which includes more than just treatment. As reported by Ed Leefeldt, an investigative and business journalist for CBS News, women who contract Zika while pregnant run the risk of birth defects in their children, specifically microcephaly, a condition in which the child’s head and brain are severely underdeveloped. The financial estimate for lifelong care of each of these children falls in the $1 million to $10 million range, an amount that few can afford. Even with fewer than 15,000 children born with microcephaly each year, the cost of their aggregate care will rise quickly into the billions of dollars [18]. Another prolific disease with massive economic consequences is Dengue. According to Break Dengue, a nonprofit organization focused on connecting different Dengue initiatives around the globe, the annual cost of Dengue is about $8 billion for all types of Dengue cases, from nonmedical to fatal. Dengue is one of the most rapidly spreading mosquito-transmitted diseases worldwide, and, as such, the costs will only increase [19]. Similarly, Lyme disease treatment costs over $1 billion annually, according to the Bloomberg School of Public Health at Johns Hopkins University. Patients often develop longer-lasting symptoms, known as post-treatment Lyme disease syndrome, that can cost upwards of $3,000 per patient in return visits and treatments [20]. At present, there is only one treatment option with the potential to not only lower the initial cost of treatment, but also eliminate the cost associated with return visits. CRISPR-Cas9 can reduce the overall cost of these diseases by creating cost-effective vaccines and therapies. With vaccinations, fewer cases of Zika and Dengue will occur, nearly eliminating the financial burden of the treatments and care for patients. In particular, the chances of children born with microcephaly will decrease, eliminating the expensive lifelong care that those children would require. For those who contract Zika and Dengue despite the availability of vaccinations, treatments will be more accessible and affordable. Additionally, when mice are genetically engineered to no longer carry Lyme disease, it will cease to spread, thus diminishing the total cost of the disease. However, as discussed by Michael Specter on National Public Radio, with the elimination of Lyme disease and the potential elimination of mosquitoes that transmit Zika and Dengue, there could be environmental repercussions. Since nothing like this has been attempted previously, what will happen if these genetically engineered organisms are released into the wild is unknown [8]. T Cells Cancer-T cell interactions are limited by the T cell’s ability to attack cancerous cells. As stated in an article published by the Fred Hutchinson Cancer Research Center in ScienceDaily, T cells are naturally programmed not to attack the body, because to do so would result in an autoimmune disease. All cancerous cells, regardless of type, have in common unique proteins on their surface, known as antigens, which characterize them as foreign and malignant. When T cells recognize these proteins, they mobilize for attack against the cancer cells. However, the cancerous cells can detect T cells because of a specific antigen analogous to immune cells, and deactivate the T cells permanently, inhibiting attacks by those cells [23]. To prevent tumors from protecting themselves from immune response, researchers have altered the DNA of T cells to be unrecognizable to cancer cells. While current procedures to edit T cells are effective, they often result in unwanted gene placement that can cause additional problems, such as mutated T cells. CRISPR-Cas9 technology has emerged as a new approach to editing the DNA of T cells that makes gene edits more precise, allowing both improved structure and function of the T cells without harmful insertions of genes. Both June and Sadelain have proposed clinical trials that will use CRISPR to edit T cells and make them undetectable by cancer [21][22]. Pioneers of Genetically Modified T Cells June intends to insert three separate DNA fragments into the genome of his patients’ T cells. The first edit will program T cells to produce a protein that enables them to better 5 Elliott Hammersley Claire Kraft recognize cancer cells. The second edit is a sequence that removes a natural T cell protein, which, if present on the T cell after the first edit, would interfere with the canceridentification process. The third edit will remove the gene for the antigen on T cells that enables cancer cells to recognize them, thereby preventing cancer cells from incapacitating the T cells [21]. The result of the third edit is exemplified in Figure 3, found on the American Association for Cancer Research’s website. already use CAR T cells, but Sadelain aspires to demonstrate the efficacy and security of CRISPR-edited CAR T cells [22]. Targeted Cancers As highlighted in an article on SingularityHub, a site specializing in publishing technological breakthroughs, three classes of cancers caught the attention of both June and Sadelain: melanoma, myeloma, and sarcoma [26]. Each type is often difficult to treat with current methods. According to the American Cancer Society, melanoma (skin cancer) is identified in roughly 95,000 people every year and kills more than 13,000 known victims. Myeloma, or cancer of the bone marrow, is discovered in approximately 30,000 individuals each year and kills upwards of 12,000 people in previously identified cases [2]. As explained on OncoLink, a site sponsored by The Abramson Cancer Center of the University of Pennsylvania, sarcoma is cancer in the connective tissues of the body, such as blood vessels, tendons, bones, and cartilage. Sarcoma is among the most untreatable types of cancers, constituting roughly 15% of childhood cancers and appearing in 12,000 people each year, making it an ideal candidate for demonstrating the value of a successful CRISPR-Cas9 treatment [27]. The prevalence of these cancers and the difficulty associated with treating them explain why June and Sadelain have elected to treat patients suffering from them. FIGURE 3 [24] Normal and engineered T cells and their interactions with cancer CRISPR-CAS9 SUSTAINABILITY June plans to extract his patients’ T cells, edit them, and reintroduce them into the subjects. He is awaiting approval from The University of Pennsylvania, as well as endorsement by the Food and Drug Administration (FDA), before his clinical trial can begin. Once authorized, his study will proceed with eighteen patients for whom other treatments have failed. These volunteers likely will be the first people in the world to be injected with CRISPR-edited cells [21]. While June’s application may be farther along in the approval process, another utilization of this technology is under way in New York City. Sadelain at Memorial Sloan Kettering Cancer Center is focused on inserting one sequence of DNA into T cells, rather than three separate edits. The fragment of DNA he aims to insert will program T cells to produce a chimeric antigen receptor (CAR) on their surface. CAR is a protein that helps T cells identify pre-cancerous cells. Additionally, by shielding T cells from attack by cancer cells, CAR aids in reducing T cell exhaustion, defined in a Nature Immunology article as a condition common in cancer patients characterized by long periods of inactivity associated with protein-silenced expression [22][25]. By extending the period of activity for CAR, Sadelain believes T cells will deploy more effective attacks against cancer, allowing malignant cells to be eradicated expediently. Clinical treatments of blood cancers, such as lymphoma and leukemia, When compared to other gene-editing techniques, such as transcription activator-like effector nucleases (TALEN) and zinc-finger nucleases (ZFN), the cost of CRISPR-Cas9 is very low. A single TALEN for human use starts at $1,125, according to the pricing on the University of Utah’s website, and a single ZFN for human use has a $5,000 price tag, based on pricing by Sigma-Aldrich, a chemical and biochemical supply company [28][29]. In contrast, the cost of enough Cas9 to change an entire organism, though not yet approved for use in humans, averages $500, as stated on the pricing page for the biotechnology company Takara [30]. The pricing difference among these three technologies makes the cost of CRISPR-Cas9 the most sustainable and cost-effective product on the market, not to mention it boasts the highest success rate and simplest utilization. With this new and inexpensive technology, the ability to edit genes is not limited to just research institutions and biotechnology companies. CRISPR-Cas9 provides everyone who has access to a lab the opportunity to experiment with and develop new uses for this technology. Now that geneediting is accessible to anyone, people from impoverished nations and low-income backgrounds can gain access to affordable treatments for diseases such as cancer, Zika, Dengue, and many others for which no treatment exists or for which prices are high. This is especially important for use in 6 Elliott Hammersley Claire Kraft cancer treatments. With high costs and undesirable side effects, current treatment methods are less than optimal both financially and medically, but CRISPR enables favorable progress. CRISPR-Cas9 is not only financially feasible but also provides the unique opportunity to improve human life on a global scale. Nevertheless, the countless possibilities are all contingent upon the success of clinical trials and resolving potential difficulties with implementation. enhancement is finite today and ethically governed. Even so, new discoveries of gene locations will open the door to greater experimentation that could lead, for example, to designer babies, with potential parents choosing the most desirable traits, regardless of what natural inheritance would dictate [32]. Also, while editing the genetic code of embryos offers the option to remove deleterious mutations that cause diseases such as Huntington’s and sickle cell anemia, changing the DNA of human embryos poses moral and religious conundrums. Dr. David Baltimore, a renowned biomedical engineer, president emeritus of the California Institute of Technology, and recipient of the 1975 Nobel Prize in Physiology or Medicine, believes that general consensus in the United States regarding these concerns will be necessary before allowing any sort of embryonic application for CRISPR, let alone embryonic clinical trials [33]. However, in areas with fewer regulations, clinical trials on embryos have occurred already. In early 2015, Chinese scientists performed the first clinical trials of CRISPR on embryos. Their experiments aroused skepticism and trepidation, despite the use of non-viable embryos in their trials. As described in a journal article from the publication Nature, much of the concern surrounding embryonic modification stems from the fact that all edits made in viable embryos can be passed down through generations, and as these trials have never occurred before, the results of such inheritance are unknown [34]. All of this points to the need for a stringent regulatory framework for CRISPR-Cas9. DIFFICULTIES WITH IMPLEMENTATION Although CRISPR-Cas9 technology has many potential applications in medicine, its implementation is shrouded with potential complications. For example, researchers must devise efficient ways of getting CRISPR-Cas9 into the specific tissues they wish to edit. CRISPR-Cas9 also poses some safety risks associated with the cleaving process— namely, it could make cuts in unintended places, which might cause the same deleterious mutations it means to eliminate [26]. The most prominent prospective shortcoming of CRISPR-Cas9 is, once it cuts DNA, the cell then must replace the deleted segment using a process called Homology Directed Repair (HDR). HDR, a cellular DNA repair mechanism, is responsible for fixing double stranded breaks and is an integral component in the CRISPR-Cas9 editing process. It works by repairing the break with a spare piece of DNA from the cell’s nucleus or the surrounding area, and can even work using manufactured DNA. However, as discussed in a report from Science, a peer-reviewed publication, HDR is present only in dividing cells, which means just a tiny number of body cells are HDR-capable; the majority, such as liver, neural, muscle, eye, and blood cells, are HDR incapable. While HDR is active in only a few cells, the genes responsible for its expression are present in all cells and potentially can be reactivated [31]. If HDR can be reactivated, implementing CRISPR-Cas9 editing will not present any major technical difficulties; its only hindrance will stem from ethical concerns. THE FUTURE OF CRISPR-CAS9 CRISPR-Cas9 technology is progressing at a rapid rate and is outpacing society’s ability to regulate it; because of the lack of regulation, CRISPR’s proliferation and diversification is susceptible to challenge and termination based on ethical concerns surrounding its applications. Stricter guidelines and better methods for deciding when its use is appropriate should be developed, and the pace of CRISPR-Cas9 evolution demands that they be introduced sooner rather than later. Having relevant and effective regulations can ease ethical concerns and quell consumer qualms. Finally, finding a way to reactivate HDR in nondividing body cells is paramount to increasing the efficacy of CRISPR-Cas9. If the technology cannot be applied in nondividing cells, CRISPR’s future in curing genetic diseases and in the medical field will be limited to helping only a fraction of those in need. ETHICAL CONCERNS With a technology as revolutionary as CRISPR-Cas9, ethical considerations abound, and as its development continues, so does the growth of new ethical concerns. A primary concern as the field of genetic engineering expands is the potential of CRISPR-Cas9 to change the genome of humans based on personal preference, rather than on medical necessity. Potential human enhancement has fostered anxiety ever since the possibility arose of changing the human genome. Now, technologies such as CRISPR have moved it closer to becoming reality. According to Dr. Andrew Otieno, a professor in technology at Northern Illinois University, in an article published in the Journal of Clinical Research & Bioethics, the number of known gene locations available for SOURCES [1] A. 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London. 08.2016 ACKNOWLEDGEMENTS We would like to thank our parents, high school teachers, Megan, Andja, and the editors at the writing center for proofing several drafts and helping us write the best, most concise paper possible. Finally, we would like to thank Benedum and Hillman for hosting us through excessive binge writing sessions. 9
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