Strategies to ensure the longevity of blackleg resistance genes in canola Project Report - GRDC project code UM020 Compiled by Dr Steve Marcroft July 2007 Supported by Project Team The University of Melbourne Dr Phillip Salisbury (Project Supervisor) Professor Barbara Howlett The University of Western Australia Dr Hua Li Dr Martin Barbetti Dr Sivasithamparam Uni WA logo CSIRO Dr Susie Sprague Marcroft Grains Pathology Dr Steve Marcroft Collaborators SARDI Mr Trent Potter NuSeed Dr Nelson Gororo Birchip Cropping Group Mr Peter Taylor Growers Mr Peter Taylor Mr Simon Ballinger Mr Ivan Schulz Mr Ross Lutt Mr Des Sergeant The University of Melbourne Ms Vicki Thomas Dr Angela Van der Wouw NVT Mr Allan Bedggood Contact: Dr Steve Marcroft, Marcroft Grains Pathology, Grains Innovation Park, 110 Natimuk Rd, Horsham Vic 3400 Email: [email protected] Phone: 03 5381 2294 2 Contents Project Summary Page 4 Overview of project methodology 6 Sources of blackleg resistance used in this study 7 Experiments 1. Rotation of different sources of blackleg resistance 8 2. Isolation distance (space and time) required between crops and stubble of the same resistance source 14 3. Pathogen monitoring - screening different sources of blackleg resistance against single spore blackleg isolates 19 4. Field monitoring - survey of blackleg severity at yield evaluation sites (NVT) 24 Future work 31 Publications and Presentations 32 Leptosphaeria maculans isolates collected during the project (isolates available for research purposes) 34 3 Project Summary Blackleg caused by Leptosphaeria maculans is the major disease of Brassica napus (canola) worldwide. Monogenic resistance, derived from B. rapa ssp. sylvestris has been overcome in Australia, causing severe yield losses in canola cultivars reliant on this resistance source. In addition, polygenic resistance in some cultivars has been eroded with time. This loss of resistance is due to the increased frequency of virulent isolates in fungal populations under selection pressure from resistance genes in the host. Experience in other crops suggests that rotation of different resistance genes in space and time may reduce the frequency that resistance genes are rendered ineffective by changes in fungal populations. In this report, we describe results of experiments aimed at determining if rotation of canola cultivars from different blackleg resistance sources can increase the durability of the resistance sources in canola cultivars and thus reduce yield loss caused by blackleg. The sources of blackleg resistance used were: Australian polygenic, European winter, sylvestris and Brassica juncea. Key findings 1. Populations of the blackleg fungus respond very quickly to changes in sources of blackleg resistance in canola. For instance, on Eyre Peninsula in 2002 canola varieties containing sylvestris resistance were immune to blackleg, whilst in 2003 and 2004 crops were totally susceptible. At trial sites in 2005 and 2006, these varieties had lower levels of blackleg severity, as local farmers had not grown these sylvestris varieties since 2003. 2. Blackleg severity remained low over the three years of this project (2004-06) when canola was sown into canola stubble from the previous year provided that the new canola cultivar was based on a different resistance source to the stubble into which it was sown. 3. Blackleg isolates display host specificity. Isolates collected from a particular resistance source were more virulent against the source they were collected from, than against different sources of resistance. 4. The isolation distance required between stubble and canola of the same resistance source is approximately 500 m. This was consistent even where the sylvestris resistance had been overcome. 5. Climate / environment and canola production intensity have a major influence on blackleg severity enabling a risk based blackleg management plan to be developed. -High risk – continuous cropping, high rainfall; -Medium risk – long rotations, medium rainfall; -Low risk – opportunistic canola planting, low rainfall. Canola cultivars reliant on the same resistance sources could be separated in space and time. Therefore growers could be encouraged to: Grow polygenic cultivars, where possible. Grow cultivars with different sources of blackleg resistance but never in successive years. Keep a minimum of 500 m between the current crop and previous stubble of the same resistance source. 4 These results suggest that rotating canola cultivars that utilise different blackleg resistance sources may reduce blackleg severity and in view of the experience in other crops could also reduce the risk of blackleg resistance being overcome by the blackleg fungus. Given that the blackleg fungus responds so quickly to new sources of blackleg resistance, the Australian canola industry must develop production systems that do not expose the same resistance sources to the blackleg fungus for consecutive years in the same vicinity. Rotation of resistance may reduce the frequency of blackleg strains that are capable of overcoming particular sources of resistance. This strategy thereby would prolong the life of cultivars. 5 Overview of project methodology Four sources of blackleg resistance were used in this study. The sources were chosen from results of previous work showing that they were effective against Australian blackleg isolates. The chosen sources of resistance are already or are likely to be available to the canola industry in the near future. Sources of blackleg resistance used in this study Source of blackleg What the source is resistance referred to in this study Cultivars derived from the source of resistance used in this study ATR-Beacon Australian polygenic Polygenic Brassica rapa subspecies sylvestris Sylvestris Surpass501TT Surpass400 European winter Winter Columbus Brassica juncea Juncea JR-46 A number of experiments were undertaken from 2004 to 2007. The experiments were designed to determine if rotation of different sources of blackleg resistance could reduce blackleg severity and have the potential to increase the longevity of resistance genes. 1. Rotation of different sources of blackleg resistance The first experiment was to grow canola for three consecutive years in the same paddock. However, each year a different source of blackleg resistance (polygenic, sylvestris, European winter, juncea) was sown. Normally canola sown directly into canola stubble results in severe infection, if canola could be sown directly into canola stubble without severe infection this would provide evidence that rotation of resistance sources could reduce blackleg severity. Plants in pots containing the four different sources of blackleg resistance were raised as seedlings and then placed onto the stubble of the field sites to allow natural infection to occur. This allowed the collection of blackleg severity data on each source of blackleg resistance during each year of the project. It also provided data on all possible rotation sequences. 2. Isolation distance (space and time) required between crops and stubble of the same resistance source For industry to be able to exploit this rotation concept growers must be able to manage resistance rotation on a relatively small scale (one to three farms). To trial such an approach, pots containing sylvestris plants were placed at increasing distances from sylvestris stubble. This experiment was used to determine how far the current crop should be from stubble of the same resistance source to avoid the most damaging levels of blackleg infection. 6 3. Pathogen monitoring - screening different sources of blackleg resistance against single spore blackleg isolates A major threat to resistance rotation is that blackleg isolates will inherit multiple virulence alleles allowing one isolate to attack more than one resistance source. To monitor this situation single spore isolates were collected and screened over the four different sources of blackleg resistance to determine if some isolates have multiple virulence alleles. 4. Field monitoring – blackleg survey of yield evaluation sites (NVT) In some regions prior to 2004, growers had almost exclusively grown cultivars containing sylvestris resistance each year for three years. Then in 2004, they simultaneously switched to cultivars with polygenic resistance as the sylvestris resistance was no longer effective. This gave us the opportunity to investigate two scenarios: i) how severe would blackleg be in polygenic cultivars with only sylvestris stubble as the inoculum source; ii) will the sylvestris resistance always be susceptible, or if sylvestris cultivars are no longer grown, will sylvestris cultivars (in trial plots) have lower blackleg severity? 7 1. Rotation of different sources of blackleg resistance BACKGROUND This experiment was undertaken in 2004, 2005 and 2006. It was designed to test if the rotating of cultivars with different sources of blackleg resistance led to a reduction in blackleg severity. Generally canola sown into canola stubble from the previous year would result in more than 50% plant death. The rotation theory suggests that the blackleg isolates from the stubble of one resistance source may be less virulent on other sources of resistance. METHODS Site Locations Two sites were chosen for this study. The first site was 20 km south of Horsham in Victoria, and the second was at Bordertown in south-eastern South Australia. The Horsham site was in a region with no history of severe blackleg infection in sylvestris cultivars, while the Bordertown site had severe infection in 2003. In early 2004, stubble from the two sites was surveyed for the presence of stem canker. At Horsham, some canker was observed but the majority of stems were clean. In contrast the majority of stems from Bordertown were severely cankered. One Hectare Field Sites At the Horsham and Bordertown sites in 2003, commercial crops of the sylvestris cv. Surpass603CL were sown. In each successive year, one ha plots of a canola cultivar based on a different source of blackleg resistance were sown into the same paddocks. In 2004, the one hectare plots were sown to the polygenic cultivar ATRBeacon and in 2005 they were sown to the European winter cv. Columbus (with major resistance genes Rlm1 and Rlm3) (see Table 1). Figure 1. One hectare plot, Horsham site December 2004 – the canola has been slashed at late flowering to provide stubble for subsequent year’s of the project. Pots were placed on this site in 2004, 2005 and 2006. 8 In 2004 and 2005, the canola plants were scored for internal infection severity and the percentage that had died (mortality percentage). Internal infection is determined by severing the roots at the crown with a pair of secateurs and then visually inspecting the crown to estimate the percent of the crown that is discoloured by blackleg infection. The plants were scored as 0, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90 or 100% internal infection. The mortality percentage is determined by dividing the number of dead plants by the number of living plants. When polygenic cultivars were sown into sylvestris stubble they had 30% internal infection and 8-9% mortality (Table 1). In the same year, in the nearby Wonwondah blackleg nursery, ATR-Beacon had 80% mortality. Table 1. Horsham (Vic) and Bordertown (SA) one ha plots of canola were sown directly on top of each other from 2003 to 2006. In 2004 and 2005 canola plants grown in pots were placed onto the same one ha plots of stubble. Year Cultivar sown into the one ha plots (plots were sown directly on top of each other) 2003 Surpass 603CL (sylvestris) commercial crops Horsham Low blackleg severity Bordertown High blackleg severity 2004 2005 2006 Canola stubble in the one ha plots Canola plants (in pots) containing: sylvestris, polygenic, winter and juncea plants were placed onto the stubble of same one ha plots ATR-Beacon (polygenic) one ha plots Horsham Internal infection = 27% Mortality =8% Bordertown Internal infection =30% Mortality =9% 2003- sylvestris Pots placed onto: sylvestris stubble Columbus (winter) one ha plots Horsham Internal infection 0% Mortality 0% Bordertown Internal infection 22% Mortality 2% 2004-polygenic 2003-sylvestris Pots placed onto stubble: 2004-polygenic + 18 month old 2003-sylvestris 2005-winter 2004-polygenic 2003-sylvestris Pots placed onto stubble: 2005-winter + 18 month old 2004-polygenic + 30 month old 2003-sylvestris 9 0% 10% 40% 70% 100% Figure 2. Canola stems showing various levels if internal blackleg severity. Yield loss generally occurs with more than 50% internal infection. 10 Rotation -pots This experiment was used to provide knowledge on each possible rotation sequence. For example polygenic, sylvestris, juncea and winter plants would be placed on sylvestris stubble (year 1) then the same four sources of resistance would be placed on polygenic stubble (year 2) and then winter stubble (year 3). In 2004, 2005 and 2006 canola plants were propagated in 20 cm diameter pots in the shade house. At the one leaf growth stage they were transported to the one ha field sites at Horsham and Bordertown (Figure 3). The potted canola plants with different blackleg resistance sources (cv. Surpass 400 – sylvestris resistance, cv. ATR-Beacon – polygenic resistance, cv. Columbus – winter resistance and B. juncea JR46) were left at the sites for four weeks during which time they were exposed to natural blackleg infection (Table 1 & Figure 3). The pots were then returned to the shadehouse and allowed to grow to maturity, when individual plants were assessed for internal infection and mortality as previously described (Figure 2). Figure 3. Pots containing the four sources of blackleg resistance placed on polygenic stubble at the Bordertown one hectare site. The bird netting was used to keep unwanted guests out. 11 RESULTS & DISCUSSION Our results indicate that the rotation of different blackleg resistance sources can reduce blackleg severity. In 2004, plants were severely infected when pots of sylvestris cultivars were placed on sylvestris canola stubble, while the polygenic plants on the same sylvestris stubble had significantly less internal infection (Table 2). Interestingly, in 2005 and 2006 blackleg severity remained low in all cultivars. Even where polygenic cultivars were placed onto polygenic stubble they still had relatively low levels of infection. This may be due to the presence of only small numbers of virulent isolates in populations of the blackleg fungus. As seen with the breakdown of the sylvestris resistance in 2003, it took a number of years of sowing a particular resistance source (sylvestris) for the majority of blackleg isolates to become virulent against that source of resistance. If the sources of resistance are continually changed the frequency of virulent isolates for any particular source of blackleg resistance may remain low. In 2006, blackleg severity in commercial crops was generally low due to the severe drought seasonal conditions. However, in this experiment the plants in pots were regularly hand watered so they were not water stressed. At Bordertown in 2006, which was even more droughted than Horsham, sylvestris plants (in pots) were placed onto sylvestris stubble (see next chapter) (Figure 6) resulting in 100% plant death. These data suggest that the seasonal conditions and hand watering would have been sufficient to cause severe blackleg infection had virulent blackleg isolates been present. In Table 2 the data shown is the percentage of plants with greater than 50% internal infection. This level of disease was chosen as previous work has shown that lower levels of disease do not always result in yield loss. Table 2. Percentage of canola plants in pots with severe blackleg infection (>50% internal infection). Pots were placed onto the one ha canola stubble plots at Horsham (Vic) and Bordertown (SA). Stubble at the Sylvestris pots Polygenic pots Winter pots Juncea pots one ha canola plots Hor Btwn Hor Btwn Hor Btwn Hor Btwn 2004 sylvestris 67% 100% 25% 46% 0% 17% 0% 0% 2005 polygenic 48% 100% 21% 21% 14% 21% 0% 8% 2006 winter 9% 66% 9% 16% 6% 13% 0% 6% Hor = Horsham, Btwn = Bordertown. 12 Figure 4. Pots containing different sources of blackleg resistance, placed onto sylvestris canola stubble. The third pot contains plants with sylvestris blackleg resistance while the other pots contained plants with either polygenic, winter or Juncea blackleg resistance. 13 2. Isolation in space and time required between crops and stubble of the same resistance source BACKGROUND The method of rotating different sources of blackleg resistance to reduce blackleg severity depends on the separation of the different sources of blackleg resistance in both space and time. It is therefore essential to know what isolation and distance is required between crop and stubble of the same resistance source. Previous research on polygenic sources of blackleg resistance suggests that canola should not be grown into canola stubble, but rotations with a break crop (canola – wheat - canola) reduce severe blackleg infection. The same research showed that leaving 500 m between this year’s crop and last year’s stubble was sufficient to reduce blackleg severity. However, this previous research was undertaken on canola crops where the polygenic blackleg resistance had not been overcome. It was assumed in the situation where the sylvestris cultivars were completely susceptible, the isolation time and distance would need to be greater than 18 months and 500 m. METHODS Site Location To determine the minimum isolation distance and time required, the following experiments carried out from 2003 to 2006. In 2003 commercial paddocks containing sylvestris canola cultivars were surveyed for blackleg severity. An isolated paddock at Bordertown S.A. (cv. Surpass 603CL) with high blackleg severity was identified. The paddock was isolated from all other sylvestris canola crops by at least 5 km. Transects In 2004, pots were sown with sylvestris canola plants (cv. Surpass5001TT) and propagated in the shade house. When the plants were at the one-leaf growth stage they were transported to the paddock at Bordertown with the sylvestris stubble. Five pots containing a total of 20 sylvestris canola plants were placed at various distances from the commercial canola stubble paddock. The distances were: 0m (on the canola stubble); 250m; 500m; 750m and between 850 to 1000 m away from the canola stubble (Table 3). In 2004, two transects were orientated in different directions from the 2003 commercial stubble paddock. In 2005, pots were placed along the same transects as in 2004 but the commercial canola stubble was now 18months old. In 2006 only one transect was placed identical to the 2004 transect (commercial stubble now 30 months old) and the second transect was placed from a new commercial canola stubble paddock that was also sown to sylvestris canola cv. Surpass603CL in 2005. The stubble of this new commercial sylvestris stubble paddock was inspected for blackleg damage and had severely cankered stems (most roots were detached from their stems). The pots were left in the field for 4 weeks until blackleg leaf lesions were clearly visible on the plants. The pots were then returned to the shade house and the plants allowed to grow to maturity, when they were scored for internal infection and mortality percentage as previously described. . 14 Table 3. Distance in space and time of sylvestris canola plants (grown in pots) from sylvestris canola stubble at Bordertown, South Australia. Year 2003 2004 2005 2006 2005 2006 Number of transects Paddock Distance from sylvestris stubble (metres) 2 2 1 Paddock A Commercial paddock of sylvestris canola Stubble 6 months old Stubble 18 months old Stubble 30 months old 0 0 0 250 250 250 500 500 500 750 750 750 >850 >850 >850 1 Paddock B Commercial paddock of sylvestris canola Stubble 6 months old 0 250 500 750 1000 RESULTS & DISCUSSION Separating the same source of blackleg resistance in space Figures 5 & 6 clearly indicate that 500 m is an adequate distance to separate the current canola crop and stubble of the same resistance source. This means that individual growers (or neighbouring growers in a region) can separate current crops from stubble of the same source without the need to consider sources of blackleg inoculum at distances greater than 500m (Figure 7). This finding is consistent with previous research. Separating the same source of blackleg resistance in time Figures 5 & 6 show similar levels of infection in plants exposed to 6-month and 18month old stubble. In contrast in plants exposed to 30-month old stubble, low levels of disease were present. This result indicates that leaving two seasons between stubble and then sowing a cultivar of the same resistance source (2 year break) is an adequate time to reduce blackleg severity (Figure 8). This conclusion is different to the previous study that found 18-months (1 year break) was sufficient when separating polygenic stubble from cultivars with effective polygenic resistance. 15 % Severe internal blackleg infection 100 90 6 Months 80 18 Months 70 30 Months 60 50 40 30 20 10 0 0 250 500 750 >850 Distance (m) from canola stubble Figure 5. Severe blackleg (>50% internal infection) of sylvestris based canola plants in pots placed at various distances from canola stubble aged 6 months, 18 months and 30 months. 100 90 6 Months 80 18 Months % plant mortality 70 30 Months 60 50 40 30 20 10 0 -10 0 250 500 750 >850 Distance (m) from canola stubble Figure 6. Canola plant mortality (%) in pots placed at various distances from sylvestris canola stubble aged 6 months, 18 months and 30 months. 16 Pots on canola stubble from previous year’s crop Pots 250m from canola stubble from previous year’s crop Pots 500m from canola stubble from previous year’s crop Pots 750m from canola stubble from previous year’s crop Pots 1000m from canola stubble from previous year’s crop Figure 7. Sylvestris based canola plants placed at increasing distances from 6-month old sylvestris canola stubble. 17 Figure 8. Sylvestris canola plants placed on 30 month old sylvestris canola stubble. 18 3. Pathogen monitoring - screening different sources of blackleg resistance against single spore blackleg isolates (differential study) BACKGROUND This experiment was designed to determine if individual blackleg isolates are able to attack multiple sources of blackleg resistance. The concept of rotating different blackleg resistance sources assumes that individual blackleg isolates are only able to attack one source of blackleg resistance. It is known that individual blackleg isolates can have multiple virulence, for instance isolates virulent on sylvestris cultivars are able to attack Rlm1 and LepR3 resistance genes, while isolates virulent on cv. Columbus are able to attack both Rlm1 and Rlm3 resistance genes. The rotation of resistance sources will fail if isolates evolve that are able to attack multiple sources of resistance. Fortunately, in field situations blackleg isolates are generally only able to attack one particular resistance source. If the blackleg fungus developed multiple virulence then all blackleg resistance sources would have failed during the past 30 years of canola production, this has not occurred. The reason why isolates with the ability to attack multiple sources of resistance may not proliferate has in part been explained by European research which found that such virulent isolates may be less fit. If there is no positive selection pressure for isolates with multiple virulence then these isolates will decrease in proportion to other isolates within the pathogen population. For example, if isolate A is virulent against both sylvestris and polygenic cultivars and isolate B is only virulent against sylvestris cultivars, then if both isolates attack a sylvestris cultivar, isolate B will out-compete isolate A. METHODS To gain a snap shot of the population of the blackleg fungus across Australia, approximately 100 individual isolates were collected each year in 2004, 2005 and 2006 (Table 5). A subsample of these isolates were then used to infect the four different sources of blackleg resistance used in the field experiments to determine the proportion of isolates that are virulent against more than one source of blackleg resistance. Isolates were collected from the stubble of two cultivars, ATR-Beacon (polygenic) and Surpass501TT (sylvestris). These two cultivars were sown in all yield evaluation trials (NVT) across Australia and individual plants with blackleg symptoms were collected from these sites at plant maturity. Stubble from eastern Australia was evaluated at Horsham and stubble from Western Australia evaluated at Perth. The stubble was placed on bare soil underneath chicken wire (to stop scattering) and allowed to weather over the summer and autumn. In late autumn the stubble was taken to the laboratory to capture individual sexual ascospores. Small pieces of stubble were stuck to the lid of a petri dish prior to being wet to initiate spore discharge. The discharged spores adhered to agar in the bottom of the petri dish. Individual ascospores on the agar were harvested using a compound microscope. The captured spores were transferred to 10% V8 agar and cultured under UV light. Isolates were preserved in distilled water. 19 Isolates have been preserved and will be maintained for future studies. They are available for research purposes by contacting Steve Marcroft, Barbara Howlett or Martin Barbetti. The information available for each isolate includes: when and where it was collected, cultivar and source of resistance and the severity of blackleg in the plot from which it was collected. Figure 9. Stubble samples were weathered naturally prior to collecting blackleg isolates. Figure 10. Left; Ascospores caught in water agar prior to an individual spore being separated and cultured. Right; A single spore culture ready to be harvested and used as inoculum to infect the different sources of blackleg resistance. 20 Plant infection of different sources of blackleg resistance Individual blackleg isolates from the collection were chosen to screen against different sources of blackleg resistance to determine if they were virulent against more than one source of blackleg resistance. The isolates were screened over polygenic cv. ATR-Beacon, sylvestris cv. Surpass501TT, the winter resistant cv. Columbus and B. juncea line JR46. Harvested asexual pycnidiospores were adjusted to a concentration of 1 x 106 spores per ml of water. Tween surfactant was added to the spore solution which was directly sprayed onto the cotyledons of the seedlings to be screened. Inoculated plants were placed in a dew chamber with 100% humidity for 48h. Plants were grown to maturity in the shade house at Horsham and mature plants were assessed for internal infection and mortality as previously described. Figure 11. Plants in dew chamber after inoculation. In each year of the study, 20 polygenic and 20 sylvestris based isolates were screened over the differential host set, in total 120 isolates were screened over three years. In order to compare isolates, each was classified as either virulent or non-virulent. A virulent isolate caused more than 50% internal infection on at least 3 of the 5 plants. 21 RESULTS & DISCUSSION If blackleg isolates are specific to a particular source of resistance, isolates collected from stubble of a particular source of resistance would be virulent on the crop of the same source of resistance, but be non-virulent on other sources of resistance. That is, isolates from sylvestris stubble would be virulent on the plants with sylvestris resistance, but non-virulent on the polygenic, juncea or winter canola. Isolates from polygenic stubble would be virulent on polygenic cultivars but not on plants with sylvestris resistance, or other sources of blackleg resistance. As no isolates were collected from B. juncea or the winter canola, few isolates would be expected to be virulent on these sources of resistance. The majority of polygenic isolates were only virulent on the polygenic cultivar, they were not virulent on juncea or on winter canola (Figure 12). However, 10% of polygenic isolates were also able to attack the sylvestris cultivar. The sylvestris isolates were less specific in their virulence. In addition to being virulent on the sylvestris cultivar, over 40% of them were also virulent on the polygenic cv. ATR-Beacon, they also had a small effect on the juncea and winter cultivars. 70 Polygenic isolates % virulent blackleg isolates 60 Sylvestris isolates 50 40 30 20 10 0 Sylvestris Polygenic Winter Juncea Sources of blackleg resistance Figure 12. The percentage of polygenic and sylvestris blackleg isolates that were virulent on each source of blackleg resistance. In total 120 isolates were screened over the four sources of blackleg resistance. As expected, few isolates could attack the juncea or winter cultivars. This probably reflects the situation in Australia prior to release of plants with sylvestris resistance. A small proportion of isolates were already virulent on sylvestris resistance but they increased in frequency when sylvestris cultivars were grown, eventually causing the failure of these cultivars. We can therefore hypothesise that juncea and winter cultivars may have the same fate if they are not managed carefully, as there are already isolates that are virulent on these sources of blackleg resistance. 22 Of concern to the canola industry is the finding that almost 20% of isolates were able to attack both plants with either sylvestris or polygenic resistance (Figure 13). However, the theory of genetic fitness suggests that these isolates should be outcompeted over time. Although the number of isolates tested in this study was small, the number of isolates with multiple virulence appeared to decline over time. For example in 2005, 4/6 isolates from the Eyre Peninsula had multiple virulence, while only 1/8 isolates collected from the same location had multiple virulence in 2006. % of virulent blackleg isolates 60 50 40 30 20 10 Sylv+poly+win+jun Poly+win+jun Sylv+win+jun Poly+jun Poly+win Sylv+jun Syly+win Sylv+poly Jun only Winter only Poly only Sylv only Jun total Win total Poly total Sylv total 0 Sources of blackleg resistance Figure 13. Percentage of all screened blackleg isolates that were virulent on each source of blackleg resistance and on multiple sources of resistance. 23 4. Field Monitoring - Survey of Blackleg Severity at Yield Evaluation Sites (NVT) INTRODUCTION Monitoring blackleg severity in the field was used to obtain “real-life” data and to observe if blackleg was responding (in the field) in a similar way as seen in the small scale experiments. Specifically the field monitoring was used to investigate: i) how much blackleg would be in polygenic cultivars sown after sylvestris-cultivars (polygenic resistance and sylvestris stubble)? ii) will the sylvestris resistance always be susceptible, or if sylvestris cultivars are no longer grown will there be less blackleg damage over time? METHODS Between 2004 to 2006, cvs. ATR-Beacon (polygenic) and Surpass501TT (sylvestris) were sown in all advanced yield evaluation (NVT) trial sites across southern Australia. Over this 3 year period both ATR-Beacon and Surpass501TT were assessed for blackleg severity (internal infection and mortality percentage) at 180 sites. Sites were assessed by pulling 20 plants from each of 3 reps (60 plants per site) out of the ground and then cutting the crown to score internal infection. RESULTS & DISCUSSION Figure 14 shows the results from South Australian sites excluding the low rainfall sites of Minnipa and Lameroo, SA sites were chosen because sylvestris attacking isolates were generally more widespread in this state. Prior to 2004 sylvestris cultivars were widely grown, from 2004 onwards few if any sylvestris cultivars were sown in most regions of SA. % Severe internal blackleg infection 70 60 Polygenic cultivar 50 Sylvestris-derived cultivar 40 30 20 10 0 2004 2005 2006 Year Figure 14. Percentage of plants with severe blackleg infection from both the polygenic cultivar ATR-Beacon and the sylvestris cultivar Surpass 501TT in all NVT sites in South Australia over 3 years (2004-2006). 24 This data indicates that isolates virulent against both sylvestris and polygenic cultivars collected from these sites for the differential study have not become prevalent over time. The data shows that each year (after growers stopped sowing sylvestris cultivars) that the damage from blackleg on sylvestris cultivars fell markedly. Conversely blackleg severity increased on the polygenic cv. ATR-Beacon even in the drought of 2006. This result is clear evidence that the blackleg population changes very rapidly in response to the source of blackleg resistance deployed by growers. In other regions of Australia, namely Western Australia, this marked trend towards less disease in sylvestris cultivars was not seen (Table 4). The likely explanation for this is due to the commercial cultivars grown during the study. In Western Australia, no large scale breakdown in resistance occurred in 2003, and although growers were warned and most stopped growing sylvestris cultivars, a number of growers still continued to grow sylvestris cultivars. Therefore, the sylvestris stubble was maintained in the production systems. Figure 15. Cutting a canola plant at the crown to assess blackleg internal infection. 25 Figure 16. Scoring NVT trials for blackleg severity. 2002 2003 2005 2006 2004 Figure 17. Sylvestris based cultivars in NVT trial sites from 2002 to 2006 on the Eyre Peninsula SA. 26 Table 4. The percentage of plants from each NVT site with severe infection (>50% internal blackleg infection). Year 2004 State NSW 2004 SA 2004 Vic Site Barmedman Binalong Boree Creek Coleambally Combaning Coolamon Finley Galong Grenfell Gundibindyal Illabo Oaklands Thuddungra Wagga Wagga Wakool Wallendbeen Arthurton Bordertown Frances Keith Lamaroo Lock Minlaton Minnipa Mt Hope Naracoorte Riverton Spalding Ungarra Yeelanna Charlton Diggora Gerang Hamilton Hopetoun Horsham Inverleigh Katamatite Kerang Lake Bolac-SFS Lake Bolac Minyip Moyston Rutherglen Sea Lake Walpeup Warracknabeal Wilby Polygenic resistance 0 30 0 0 0 2 5 33 18 12 5 7 12 7 0 13 15 13 13 22 0 43 40 0 17 37 23 5 7 42 2 2 3 18 0 3 17 8 0 15 10 8 0 7 0 0 0 5 Sylvestris resistance 0 10 0 0 0 0 0 2 0 2 7 0 0 5 0 2 73 15 15 80 2 62 93 0 58 28 68 13 72 100 2 0 3 5 0 0 8 0 0 3 0 2 2 2 0 2 0 0 27 Year 2004 State WA 2005 NSW 2005 SA Site Badgingara Eradu Esperance Kalanie Katanning Mt Barker Newdegate Wongan Hills Yuna Ariah Park Ariah Park Berrigan Cowra Forbes Gerogery Grenfell Harden Harefield-Pioneer B'leg Lockhart Lockhart Marrar Parkes Wagga Wagga Wellington Arthurton Bordertown Frances Keith Lameroo Lock Minlaton Minnipa Moyhall Mt Hope Riverton Spalding Turretfield Wanilla Yeelanna Polygenic resistance 65 13 25 0 18 17 12 3 5 38 43 42 37 45 3 25 17 62 Sylvestris resistance 68 0 13 0 23 27 7 0 0 50 22 13 3 3 2 8 5 25 8 2 15 13 32 13 23 63 15 42 3 13 20 67 40 0 3 17 23 17 5 3 7 0 3 33 0 35 77 43 93 7 18 12 70 58 5 10 43 20 62 32 28 Year 2005 State Vic 2005 WA 2006 NSW 2006 SA Site Birchip Charlton Diggora Gerang Hamilton Horsham Katamatite Laharum Lake Bolac Minyip Streatham Ultima Walpeup Wilby Calingiri Cunderdin Eneabba Merredin Mingenew Mt Barker Nabawa Nyabing Wickepin Williams Ariah Park Cowra Gerogery Grenfell Lockhart Parkes Wellington West Wyalong Arthurton Frances Keith Lameroo Minlaton Minnipa Moyhall Mt Hope Riverton Spalding Turretfield Yeelanna Polygenic resistance 37 43 33 45 38 28 43 73 37 30 37 5 7 43 23 12 0 5 0 52 10 82 72 77 2 0 0 0 0 3 0 0 38 27 15 0 23 0 50 33 30 13 17 17 Sylvestris resistance 8 13 10 50 7 23 7 70 2 18 17 2 0 25 38 12 0 2 0 87 0 60 43 48 0 0 3 0 0 0 2 0 15 10 5 0 15 0 30 35 17 2 18 45 29 Year 2006 State Vic 2006 WA Site Charlton Diggora Hamilton Horsham Inverleigh Katamatite Minyip Streatham Teesdale Calingiri Cunderdin Eneabba Holt Rock Jerramungup Katanning Kojonup Lake Grace Merredin Munglinup Nyabing Scaddan South Stirling Wickepin Williams Wubin Polygenic resistance 2 0 35 0 0 15 0 42 72 2 2 33 12 40 17 23 10 0 82 43 58 47 0 17 0 Sylvestris resistance 0 0 15 0 2 0 0 5 0 13 2 3 23 33 17 30 5 0 95 28 88 30 2 15 0 30 Future Work Monitoring blackleg severity on different sources of host resistance. Data collected from the field are crucial to support any management plan for durable blackleg resistance. Monitoring advanced yield trials will be an early warning system to growers to advise if a source of blackleg resistance has been overcome by the fungus. It will also show if the durable blackleg management plan is working in the field. The following activities will be pursued: 1. NVT field surveys - to determine areas where (if) resistance is being overcome. 2. Replicated sites – for destructive sampling in yield and blackleg nurseries. Regions of high blackleg severity will be targeted. 3. Screen new isolates for multiple virulence –virulent isolates will be collected from field surveys and replicated sites, they will be screened for virulence across different sources of resistance. 4. Resistance erosion alerts - blackleg rating data and the data collected in the above points will be used to place alerts on cultivars with possible erosion of blackleg resistance. Pilot scale implementation A pilot scale program will be undertaken for three years before a durability plan is released to farmers in 2010. 1. Sources of blackleg resistance available Polygenic (most commercial cultivars). Winter/polygenic group (commercially available). Sylvestris/polygenic (commercially available). Brassica juncea – (commercial release in 2007 – Dune). 2. Classify cultivars into four groups – using pedigree information, molecular markers where available, and screening commercial cultivars against known blackleg isolates. 3. Working Group (pathologists, breeders, growers, advisors) - to determine best practical management guide, that utilises the results from UM020. 4. Potential grower package 1. Australian Blackleg Ratings with resistance erosion alerts. 2. Cultivar resistance groups guide. 3. Durable blackleg resistance management guide; could be produced as a management practice within the existing guide. 31 Summary of Publications and Presentations Papers in internationally refereed journals Gladders P, Evans N, Marcroft S, Pinochet X (2006) Dissemination of information about management strategies and changes in farming practices for the exploitation of resistance to Leptosphaeria maculans (Phoma stem canker) in oilseed rape cultivars. European Journal of Plant Pathology 114, 117-126. Sprague SJ, Balesdent M, Brun H, Hayden H, Marcroft SJ, Pinochet X, Rouxel T, Howlett BJ (2006). Major gene resistance in Brassica napus (oilseed rape) is overcome by changes in virulence of populations of Leptosphaeria maculans in France and Australia. European Journal of Plant Pathology 114, 33-40. Delourme R, Chevre A, Brun H, Balesdent M, Dias P, Salisbury P, Renard M, Rimmer S.(2006) Major gene and polygenic resistance to Leptosphaeria maculans in oilseed rape (Brassica napus). European Journal of Plant Pathology 114, 41-52. Sprague SJ, Marcroft SJ, Hayden H, Howlett B (2006) Major gene resistance to blackleg in Brassica napus overcome within three years of commercial production in South eastern Australia. Plant Disease 90, 190-198. Manuscript papers to be published during 2007 1. Blackleg severity across Australia 2. Rotation of different sources of blackleg resistance to decrease blackleg severity 3. Blackleg isolate specificity Conference proceedings Marcroft SJ, Howlett BJ, Salisbury PA (2005) Is durable blackleg resistance possible? Australian Research Assembly on Brassicas, Pt Linclon. Salam MU, Marcroft SJ, Potter TD, Wratten N, Macleod WJ, Diggle AJ (2005) Blackleg severity in canola during 2004 across Australia: why was it high in South Australia and low elsewhere? Australian Research Assembly on Brassicas, Pt Lincon. Sprague SJ, Marcroft SJ, Hayden HL, Howlett BJ (2005) Breakdown of major gene resistance to blackleg (Leptosphaeria maculans) in canola (Brassica napus). Australasian Plant Pathology Symposium, Geelong. Van de Wouw AA, Cozijnsen AJ, Marcroft SM, Salisbury PA, Rouxel T, Balesdent MH, Howlett BJ (2007) Use of molecular markers to assess changes in frequency of virulent isolates in populations of Leptosphaeria maculans. Australian Research Assembly on Brassicas, Geraldton. Marcroft SJ, Potter TD, Howlett BJ, Salisbury PA (2007) Management strategies for durable blackleg resistance in canola in Australia. Australian Research Assembly on Brassicas, Geraldton. 32 Marcroft SJ, Potter TD, Howlett BJ, Salisbury PA (2007) Management strategies for durable blackleg resistance in canola in Australia. 26th Australasian Plant Pathology Symposium, Adelaide. Marcroft SJ, Li H, Sprague SJ, Howlett BJ, Barbetti MJ, Sivasithamparam K, Potter TD, Burton WA, Barnes S, Robson D, Kay J, Ludwig I, Hoskings M, Flett P, Taylor P, Lutt R, Schulz I, Sargeant D, Ballinger S, Salisbury PA (2007) Is durable blackleg resistance feasible in Australia? International Rapeseed Congress, China. Thomas V, Salisbury PA, Norton R, Marcroft SJ (2007) The current situation in the Brassica juncea- Leptosphaeria maculans pathosystem and how future changes will be monitored. International Rapeseed Congress, Wuhan, China. GRDC updates Marcroft SJ, Sprague SJ (2004) Blackleg resistance breakdown in canola – results, reasons and recommendations. Wagga Wagga, Bendigo, Adelaide and Perth. Marcroft SJ, Sprague S.J., Hind-Lanoiselet T (2005) Blackleg and Sclerotinia in Canola. Wagga Wagga, Bendigo and Adelaide. Marcroft SJ, Potter TD, Egan J, Crouch J (2006) Blackleg – ratings, bushfires, future management options. Wagga Wagga, Bendigo and Adelaide. Marcroft SJ (2007) Blackleg – ratings, bushfires, future management options. Perth. Marcroft SJ, Barbetti MJ, Li H, Sivasithamparam K, Salisbury PA, Howlett BJ, Sprague SJ (2007) Blackleg severity in WA. Presented at Perth. Marcroft SJ, Potter TD, Egan J, Crouch J, (2007) Did the 2005 Eyre Peninsula bush fire reduce blackleg severity? Presented at Perth. Other communication activities Fact Sheet - Burning canola stubble may not control blackleg. Newspaper articles in Weekly Times, Stock Journal, Stock and Land, GroundCover, Wimmera Farming and Landcare Newsletter, CAA-Canola news. Presentations at Birchip Cropping Group, Southern Farming Systems, Wimmera Farming Systems, MacKillop Group and TopCrop. Local radio interviews, Local rural report, County Hour (Vic and SA). Articles for media groups such as Jon Lamb Communications etc. Presentations at advisor training workshops (approx 250 attendees over 3 years). Three presentations at the annual National Canola Pathology Workshops held in Melbourne and Perth. Chair and coordinator of two National Canola Pathology Workshops. Public seminar at Grains Innovation Park 33 Table 5. Leptoshaeria maculans isolates collected during the project (isolates available for research purposes). Collection Year Code 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 04MGP-P001 04MGP-P002 04MGP-P003 04MGP-P004 04MGP-P005 04MGP-P006 04MGP-P012 04MGP-P013 04MGP-P014 04MGP-P015 04MGP-P016 04MGP-P017 04MGP-P018 04MGP-P019 04MGP-P020 04MGP-P021 04MGP-P022 04MGP-P023 04MGP-P024 04MGP-P025 04MGP-P026 04MGP-P027 04MGP-P028 04MGP-P029 04MGP-P030 04MGP-P031 04MGP-P032 04MGP-P033 04MGP-P034 04MGP-P035 04MGP-P036 04MGP-P037 04MGP-P038 04MGP-P039 04MGP-P040 04MGP-P041 04MGP-P042 04MGP-P043 04MGP-P044 04MGP-P045 04MGP-P046 04MGP-P047 04MGP-P048 04MGP-P049 04MGP-P050 04MGP-P007 04MGP-P008 04MGP-P009 Resistance Source Cultivar State Collection location Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Rainbow Rainbow Rainbow Rainbow Rainbow Rainbow Emblem Emblem Emblem Emblem Emblem Emblem Emblem Emblem Emblem Emblem Grace Grace Grace Grace Grace Grace Grace Pinnacle Pinnacle Pinnacle Pinnacle Pinnacle Pinnacle Pinnacle Pinnacle Pinnacle Pinnacle Pinnacle Grace Grace Grace Grace Grace Grace Pinnacle Pinnacle Pinnacle Pinnacle Pinnacle Polygenic Polygenic Polygenic NSW NSW NSW NSW NSW NSW SA SA SA SA SA SA SA SA SA SA SA SA SA SA SA SA SA Vic Vic Vic Vic Vic Vic Vic Vic Vic Vic Vic Vic Vic Vic Vic Vic Vic Vic Vic Vic Vic Vic Vic Vic Vic NSW NSW NSW NSW NSW NSW Bordertown Bordertown Bordertown Bordertown Bordertown Bordertown Bordertown Bordertown Bordertown Bordertown Moyhall Moyhall Moyhall Moyhall Moyhall Moyhall Moyhall Geelong Geelong Geelong Geelong Geelong Geelong Geelong Geelong Geelong Geelong Geelong Wonwondah Wonwondah Wonwondah Wonwondah Wonwondah Wonwondah Laharum Laharum Laharum Laharum Laharum Wonwondah Wonwondah Wonwondah 34 Collection Year Code 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2004 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 04MGP-P010 04MGP-P011 M1 04MGP-S001 04MGP-S002 04MGP-S003 04MGP-S004 04MGP-S005 04MGP-S006 04MGP-S007 04MGP-S008 04MGP-S009 04MGP-S010 04MGP-S011 04MGP-S012 04MGP-S013 04MGP-S014 04MGP-S015 04MGP-S016 04MGP-S017 04MGP-S018 04MGP-S019 04MGP-S020 04MGP-S021 04MGP-S022 04MGP-S023 04MGP-S024 04MGP-S025 04MGP-S026 04MGP-S027 04MGP-S028 04MGP-S029 05MGPP015 05MGPP016 05MGPP017 05MGPP018 05MGPP019 05MGPP020 05MGPP021 05MGPP022 05MGPP023 05MGPP024 05MGPP025 05MGPP001 05MGPP002 05MGPP003 05MGPP004 05MGPP005 05MGPP006 05MGPP007 05MGPP008 Resistance Source Polygenic Polygenic Polygenic Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Poly Poly Poly Poly Poly Poly Poly Poly Poly Poly Poly Poly Poly Poly Poly Poly Poly Poly Poly Cultivar State Collection location Polygenic Polygenic Vic Vic Wonwondah Wonwondah Surpass 400 Surpass 400 Surpass 400 Surpass 400 Surpass 400 Surpass 400 Surpass 400 Surpass 400 Surpass 400 Surpass 400 Surpass 603CL Surpass 603CL Surpass 603CL Surpass 603CL Surpass 603CL Surpass 603CL Surpass 603CL Surpass 400? 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2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 2005 Code 05MGPS046 05MGPS047 05MGPS001 05MGPS002 05MGPS003 05MGPS011 05MGPS012 05MGPS013 05MGPS014 05MGPS015 05MGPS016 05MGPS017 05MGPS018 05MGPS019 05MGPS020 05MGPS021 05MGPS022 05MGPS023 05MGPS024 05MGPS025 05MGPS026 05MGPS027 05MGPS028 05MGPS029 05MGPS030 05MGPS031 05MGPS032 05MGPS033 05MGPS034 05MGPS035 05MGPS036 05MGPS037 05MGPS038 05MGPS039 05MGPS040 05MGPS041 MU-1 MU-2 MU-3 MU-7 MU-8 MU-9 MU-10 MU-15 MU-16 MU-17 MU-22 MU-23 MU-24 MU-31 MU-32 Resistance Source Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris Sylvestris 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SA SA SA SA SA SA SA SA SA SA SA SA SA SA SA SA SA SA SA SA SA Vic Vic Vic Vic Vic Vic Vic Vic Vic Vic WA WA WA WA WA WA WA WA WA WA WA WA WA WA WA Wagga Wagga Bordertown Bordertown Bordertown Minlaton Minlaton Minlaton Minlaton Minlaton Minlaton Minlaton Minlaton Minlaton Yeelana Yeelana Yeelana Yeelana Yeelana Yeelana Yeelana Yeelana Yeelana Yeelana Yeelana Yeelana Horsham Horsham Horsham Horsham Horsham Horsham Horsham Horsham Horsham Horsham Katanning Katanning Katanning MtBarker MtBarker MtBarker MtBarker Esperence Badgingarra Badgingarra Badgingarra Badgingarra Badgingarra Yuna Yuna 37 Collection Year Code Resistance Source 2005 2005 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 MU-36 MU-37 06MGPP019 06MGPP020 06MGPP021 06MGPP022 06MGPP023 06MGPP024 06MGPP025 06MGPP026 06MGPP027 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Lake Bolac Williams Williams 38 Collection Year Code Resistance Source Cultivar State Collection location 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 2006 MU43 MU44 MU49 MU-50 MU-55 MU-56 MU-63 MU-64 MU-72 MU-73 MU-74 MU-75 MU-76 MU-77 06MGPS017 06MGPS018 06MGPS019 06MGPS020 06MGPS021 06MGPS022 06MGPS023 06MGPS024 06MGPS025 06MGPS026 06MGPS027 06MGPS028 06MGPS001 06MGPS002 06MGPS003 06MGPS004 06MGPS005 06MGPS006 06MGPS007 06MGPS008 06MGPS009 06MGPS010 06MGPS011 06MGPS012 06MGPS013 06MGPS014 06MGPS015 06MGPS016 06MGPS029 06MGPS030 06MGPS031 06MGPS032 06MGPS033 06MGPS034 06MGPS035 06MGPS036 06MGPS037 06MGPS038 Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Polygenic Sylvestris Sylvestris Sylvestris 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