1. Significance of Fatty Acid Metabolism 8. Fatty Acid Activation and Transport into the Mitochondria Overview Fatty acyl CoA reacts with carnitine 2. Acetyl CoA- the Center of Lipid Metabolism Summary Overview 9. Mitochondrial beta-oxidation Structure of Acetyl CoA Dehydrogenation 3. General Features of Fatty Acid Structure Hydration 2 essential features 2nd dehydrogenation Carbon-carbon double bonds Thyiolytic cleavage Saturated fatty acids Monounsaturated fatty acids Complete beta-oxidation of palmitoyl CoA Note: this Shocked movie file (480K) requires the Shockwave plug-in to be viewed. Polyunsaturated fatty acids Beta-oxidation of double bond at odd-numbered Carbons denoted by Greek letters 4. Nomenclature of Fatty Acids Four common systems 5. De novo Synthesis of Fatty Acids carbon Acyl CoA dehydrogenase 2,4-dienoyl CoA reductase Substrate for enoyl isomerase Reaction sums Handling the 3-carbon propionyl CoA Enzymes and isolated reactions Carboxylation by biotin dependent CoA Biotin D-isomer is converted to L-isomer 1st reaction L-isomer is converted to succinyl CoA 2nd reaction Summary 3rd reaction 10. Synthesis and Utilization of Ketone Bodies 4th reaction Overview 5th reaction 1st step 6th reaction 2nd step Transfer of butyryl group 3rd step Dimer Acetoacetate can be reduced 6. Modification of Dietary and Endogenous Fatty Acids Overall reaction Acetone Acetoacetate activated by transfer of CoA from succinyl CoA Reversal of beta-oxidatio Acetoacetyl CoA cleaved by thiolase 7. Mobilization and Transport of Adipose Fatty Acid Triacylglycerol 11. Overall Regulation of Fatty Acid Metabolism 1. Significance of Fatty Acid Metabolism Acetyl CoA Metabolism -- Overview Fatty Acid Metabolism -- Schematic Overview Major metabolic sources of acetyl CoA and some of the processes in which it serves as a substrate. Fatty acids are taken up by cells, where thy may serve as precursors in the synthesis of other compounds, as fuels for energy production, and as substrates for ketone body synthesis. Ketones bodies may then be exported to other tissues, where they can be used for energy production. Energy Fats are an important source of dietary calories. Typically 30-40% of calories in the American diet are from fat. Fat is the major form of energy storage. In a typical individual the fuel reserves are distributed as follows: fat: 100,000 kcal. protein: 25,000 kcal. carbohydrate: 650 kcal. Intermediates in synthesis. Fatty acids are intermediates in the synthesis of other important compounds. Examples include: phospholipids (in membranes). eicosanoids, including prostaglandins and leucotrienes, which play a role in physiological regulation. Diseases Some diseases involve disturbances in fatty acid metabolism. These include: diabetes mellitus various disorders of fatty acid oxidation. Sudden Infant Death Syndrome and Reye Syndrome might be related to medium chain acyl CoA dehydrogenase deficiency. Precursors of Acetyl CoA Acetyl CoA is at the center of lipid metabolism. It is produced from: fatty acids glucose (through pyruvate) amino acids ketone bodies. Products of Acetyl CoA metabolism It is the precursor of fatty acids, which in turn give rise to: triglycerides (triacylglycerols) phospholipids eicosanoids (e.g., prostaglandins) ketone bodies It is the precursor of cholesterol, which can be converted to: steroid hormones bile acids It produces energy, generated by the complete oxidation of acetyl CoA to carbon dioxide and water through the tricarboxylic acid cycle and oxidative phosphorylation. The structure of Acetyl CoA consists of two parts. 1. Acetyl group 2. Coenzyme A beta-mercaptoethylamine pantothenic acid (not synthesized in man -- an essential nutrient) phosphate 3', 5'-adenosine diphosphate Acetyl CoA Structure. The thioester bond linking the acetyl group to CoA is a "high energy" bond. Function CoA is a commonly used carrier for activated acyl groups (acetyl, fatty acyl and others). The thioester bond which links the acyl group to CoA has a large negative standard free energy of hydrolysis (-7.5 kcal/mole). One system of fatty acid classification is based on the number of double bonds. 0 double bonds: saturated fatty acids 1 double bond: monounsaturated fatty acids 2 or more double bonds: polyunsaturated fatty acids III General Features of Fatty Acid Structure The elements of fatty acid structure are quite simple. The many fatty acids which occur naturally arise primarily through variation of chain length and degree of saturation. Stearic Acid Structure Stearic acid is a typical long chain saturated fatty acid. There are two essential features: 1. A long hydrocarbon chain. The chain length ranges from 4 to 30 carbons; 12-24 is most common). The chain is typically linear, and usually contains an even number of carbons. 2. A carboxylic acid group Oleic Acid Structure Carbon-Carbon Double Bonds Carbon-carbon double bonds are almost always cis. If there is more than one, they occur at three-carbon intervals, e.g., C=C-C-C=C-. The Divinylmethane Pattern in Fatty Acids Oleic acid is a typical monounsaturated fatty acid. Linoleic Acid Structure Polyunsaturated fatty acids have their doubly bonded carbons spaced by one methyl carbon, as shown. This is the divinylmethane pattern (as if methane had two vinyl groups attached). The double bond in naturally occurring fatty acids is in the cis-configuration. The pattern may be repeated to yield fatty acids with many double bonds. This is called the divinylmethane pattern because it is as if a methane carbon (in the center) is attached to two vinyl groups (carrying the double bonds). Linoleic acid is a typical polyunsaturated fatty acid. IV Nomenclature of Fatty Acids Sum of the reactions: 8 acetyl CoA + 7 ATP + 14 (NADPH + H+) -> palmitate (16:0) + 8 CoA + 7 (ADP + Pi) + 14 NADP+ + 6 H2O Sources of acetyl CoA for fatty acid synthesis: mostly from glycolytic breakdown of glucose. First glucose is converted to pyruvate by glycolysis, then pyruvate is converted to acetyl CoA by the pyruvate dehydrogenase complex. (See diagram) There are four common systems; three of them attempt to denote the chain length and the number and positions of any double bonds. Trivial Names: Trivial names contain no clues to the structures; one must memorize the name and associate it with a separately memorized structure. IUPAC: IUPAC names follow the nomenclature conventions of the International Union of Pure and Applied Chemistry. These names describe the structures in detail (if one knows the conventions), but tend to be unwieldy. Two Abbreviation Systems: After the common names, these are the most frequently used to denote complicated structures. Carboxyl-reference names indicate the number of carbons, the number of double bonds, and the positions of the double bonds, counting from the carboxyl carbon (which is numbered 1). Omega-reference names indicate the number of number of double bonds and the position of the double bond closest to the omega carbon, counting from the omega carbon (which is numbered 1 for this purpose). Glucose Yields Acetyl CoA -- Schematic Glucose is first degraded to pyruvate by aerobic glycolysis (in the cytoplasm). Pyruvate dehydrogenase (in the mitochondria) then oxidatively decarboxylates pyruvate, forming acetyl CoA and other products. Acetyl CoA can then serve as a substrate for citrate synthesis. Citrate, in turn, can be oxidized by the tricarboxylic acid cycle in the mitochondria, or it can be transported out of the mitochondria and split in the cytoplasm to generate cytoplasmic acetyl CoA for fatty acid synthesis. Enzymes and Isolated Reactions of Fatty Acid Synthesis Acetyl CoA carboxylase catalyzes the reaction: V. De Novo Synthesis of Fatty Acids Fatty acid synthesis is the process of combining eight twocarbon fragments (acetyl groups from acetyl CoA) to form a 16-carbon saturated fatty acid, palmitate. Acetyl CoA carboxylase has three important features. It contains the prosthetic group, biotin. Biotin transfers CO2 from bicarbonate to the acetyl group. Biotin is not synthesized in humans, and is an essential nutrient. Palmitate can then be modified to give rise to the other fatty acids. These modifications may include 1) chain elongation to give longer fatty acids, such as the 18-carbon stearate. 3) desaturation, giving unsaturated fatty acids. Tissue locations of greatest importance: liver, adipose (fat), central nervous system, lactating mammary gland. The carboxylation reaction is driven to completion by hydrolysis of ATP. The enzyme catalyzes the rate-limiting reaction for fatty acid synthesis, and is under tight short-term control. It is down-regulated by: palmitoyl CoA (endproduct regulation) phosphorylation of the enzyme (via a glucagon-cAMP cascade). It is up-regulated by: citrate (allosteric) dephosphorylation of the enzyme (influenced by the insulin/glucagon ratio). will be lost as bicarbonate ion. This -SH group is part of a phosphopantethenic acid prosthetic group of the ACP. 3. In the third reaction the acetyl group is transferred to the malonyl group with the release of carbon dioxide: To summarize, it is controlled both allosterically (citrate, palmitoyl CoA) and by covalent modification (phosphorylation/dephosphorylation). Fatty acid synthase is a multifunctional enzyme with seven activities. Seven Activities of Fatty Acid Synthesis Condensation of an Acyl Group with a Malonyl Group The first iteration of the sequence catalyzed by this enzyme can be represented as follows. The acetyl group displaces the carboxyl of the malonyl group, forming a beta-ketoacyl group. This reaction is catalyzed by beta-ketoacyl Acyl Carrier Peptide synthase. The carboxyl released in the form of bicarbonate regenerates the bicarbonate used earlier in the acetyl CoA carboxylase reaction. 1. In the first reaction acetyl CoA is added to a cysteine -SH group of the condensing enzyme (CE) domain: 4. In the fourth reaction the keto group is reduced to a hydroxyl group by the beta-ketoacyl reductase activity: An acetyl group is transferred from acetyl CoA to the -SH group of the condensing enzyme domain of fatty acyl synthase, forming acetyl-CE. The reaction is catalyzed by the acyltransferase activity offatty acyl synthase. Mechanistically this is a two step process, in which the group is first transferred to the ACP (acyl carrier peptide), and then to the cysteine -SH group. Reduction of Beta-ketoacyl Acyl Carrier Peptide by NADPH 5. In the fifth reaction the -hydroxybutyryl-ACP is dehydrated to form a trans- monounsaturated fatty acyl group by the -hydroxyacyl dehydratase activity: 2. In the second reaction malonyl CoA is added to the ACP sulfhydryl group: Dehydration of Beta-hydroxyacyl Acyl Carrier Peptide Transfer of a Malonyl Group to the Acyl Carrier Peptide During fatty acid synthesis the incoming two carbon fragment is introduced as the three-carbon malonyl group. It is added to the -SH group of the acyl carier peptide domain of fatty acid synthase. In a subsequent reaction the carbon shown in green 6. In the sixth reaction the double bond is reduced by NADPH, yielding a saturated fatty acyl group two carbons longer than the initial one (an acetyl group was converted to a butyryl group in this case): Reduction of 2-enoyl Acyl Carrier Peptide. A 2-enoyl acyl group on the acyl carrier peptide is reduced by NADPH in a reaction catalyzed by enoyl acyl carrier peptide reductase. The butyryl group is then transferred from the ACP sulfhydryl group to the CE sulfhydryl: Source of Acetyl Groups and Reducing Equivalents for Fatty Acid Synthesis Acetyl groups are produced in the mitochondria by pyruvate dehydrogenase, and are transported to the cytoplasm. Citrate synthase converts acetyl CoA and oxaloacetate to citrate. Citrate exits the mitochondria on the citrate-malate antiport. In the cytoplasm citrate is cleaved by the citrate cleavage enzyme to regenerate oxaloacetate and acetyl CoA. Oxaloacetate in the cytoplasm is reduced to malate by NADH from glycolysis; this supplies the malate for the citrate-malate antiport. NADPH is produced mostly by the hexose monophosphate pathway. The malic enzyme might also contribute to NADPH production. VI. Modification of Dietary and Endogenous Fatty Acids Preparing for the Second Round of Beta-oxidation The initial two acetyl groups have been converted to a fourcarbon saturated fatty acyl group (a butyryl group in this diagram). This saturated fatty acyl group is now transferred to the condensing enzyme domain of fatty acyl synthase. The acyl carrier peptide domain is now free to accept another malonyl group, initiatiating the next round of the elongation process. This is catalyzed by the same transferase activity as was used previously for the original acetyl group. The butyryl group is now ready to condense with a new malonyl group (third reaction above) to repeat the process. The palmitate produced by fatty acid synthase is typically modified to give rise to the other fatty acids. Fatty acids from dietary sources, too, are often modified. These modifications may include: chain elongation to give longer fatty acids desaturation, giving unsaturated fatty acids. Elongation can occur in all tissues; the process differs in the endoplasmic reticulum vs. the mitochondria. In endoplasmic reticulum the reactions resemble those of de novo fatty acid synthesis. 7. When the fatty acyl group becomes 16 carbons long, a thioesterase activity hydrolyses it, forming free palmitate: palmitoyl-ACP + H2O -> palmitate + ACP-SH Fatty acyl synthetase has three important features. 1. It is essential, but not rate-limiting, for fatty acid synthesis. It is not subject to short term control. 2. ACP and the catalytic activities are on a single contiguous protein (257 kDa). 3. In animals the synthase is active only as a dimer. The malonyl/acetyl transferase, condensing enzyme and dehydratase activities from the first subunit and all the other activities from the second subunit form one functional unit. A second functional unit forms from the remainder of the two subunits. In contrast, bacterial activities are all on separate enzymes. Interestingly, the enoyl reductase of Mycobacterium tuberculosis is the target of isoniazid and other major antituberculosis drugs. Notice that malonyl CoA is the source of the added carbons, as in de novo fatty acid synthesis. The activities are closely associated with the endoplasmic reticulum membranes. The activities are separable; they are not part of a multifunctional enzyme. No ACP is involved; CoA esters are used directly. Mitochondrial Fatty Acid Elongation, a Minor Pathway In the mitochondria fatty acid elongation occurs by a reversal of beta-oxidation. Notice that here acetyl CoA is the source of the added carbons. Desaturation of fatty acids Desaturation of fatty acids can also occur in all tissues. The Overall Reaction. RCH2CH2...CH2COSCoA + NADPH + H+ + O2 --> RCH=CH...CH2COSCoA + NADP+ + 2H2O A cis double bond is formed. The reaction requires an electron transport system involving: 1.cytochrome b5 2.desaturase 3.NADPH-cytochrome b5 reductase This complex system avoids generating H2O2 in the vicinity of the sensitive double bonds. The system is associated with the membranes of the endoplasmic reticulum. Specificity: In humans there are four distinct desaturases, each with a different specificity: 9, 6, 5, 4 (that is, they act at the 9-, 6-, 5- or 4-carbons.) A minimum chain length of 16-18 carbons is required. The specificity of distance from the carboxyl carbon, along with the need for a 16-18 carbon chain means that n-6 andn-3 fatty acids are not synthesized in humans. Because some of these fatty acids are metabolically essential, they must be supplied in the diet. Desaturation and 2-carbon elongation often alternate, e.g., conversion of dietary linoleic acid (18:2 9,12) to arachidonic acid (20:4 5,8,11,14), which is important because it is a precursor of eicosanoids. 18:2 9,12 --> 18:3 6,9,12 --> 20:3 8,11,14 --> 20:4 5,8,11,14 -> eicosanoids The final products of triacylglycerol hydrolysis are glycerol and unesterified fatty acids. HSL is activated by epinephrine, norepinephrine, ACTH and glucagon, acting via phosphorylation of the enzyme. It is inhibited by insulin. Unesterified fatty acids are bound to serum albumin for transport to other tissues, where they are used. Major target tissues are muscle and liver. At the target cells unesterified fatty acids are taken up passively. Within the target cells they are bound to fatty acid binding protein. Next they must be activated. VIII Fatty Acid Activation and Transport into the Mitochondria Fatty acids inside the cell, like glucose, must be activated before proceeding through metabolism. Activation consists of conversion of the unesterified fatty acid to its CoA derivative. Fatty acids are activated by fatty acyl CoA synthetase. The reaction: R-COOH + CoASH + ATP <--> R-CO-SCoA + AMP + PPi The subsequent hydrolysis of PPi draws the reaction in the forward direction, maintaining a low cytosolic free fatty acid concentration: PPi + H2O --> 2 Pi The reaction occurs in the endoplasmic reticulum and the outer mitochondrial membrane. The fatty acyl group is transported into the mitochondrial matrix for where it undergoes beta-oxidation. In the intermembrane space of the mitochondria fatty acyl CoA reacts with carnitine in a reaction catalyzed by carnitine acyltransferase I (CAT-I), yielding CoA and fatty acyl carnitine. CAT-I is associated with the inner leaflet of the outer mitochondrial membrane. VII. Mobilization and Transport of Adipose Fatty Acid Fatty acids, as triacylglycerol (triglyceride), are stored in white adipose tissue. Brown adipose tissue is a thermogenic tissue, and is not important in energy storage. Fatty acids are stored primarily in adipocytes as triacylglycerol. Triacylglycerol must be hydrolyzed to release the fatty acids. Adipocytes are found mostly in the abdominal cavity and subcutaneous tissue. Adipocytes are metabolically very active; their stored triacylglycerol is constantly hydrolyzed and resynthesized. Unesterified fatty acid release from the adipocytes is initiated by the action of hormone sensitive lipase (HSL). In liver the CAT-I reaction is rate-limiting; the enzyme is allosterically inhibited by malonyl CoA. Malonyl CoA concentration would be high during fatty acid synthesis. The inhibition of CAT-I prevents simultaneous synthesis and degradation of fatty acids. Fatty acyl carnitine is transported across the inner mitochondrial membrane in exchange for carnitine by an antiport translocase. In the mitochondrial matrix fatty acyl carnitine reacts with CoA in a reaction catalyzed by carnitine acyltransferase II (CAT-II), yielding fatty acyl CoA and carnitine. The fatty acyl CoA is now ready to undergo betaoxidation. The scheme summarizes the entire proces: IX Mtochondrial -oxidation of long-chain fatty acids Beta-oxidation is the process by which long chain fatty acyl CoA is degraded. The products of betaoxidation are acetyl CoA, FADH2, NADH and H+ . The FADH2, NADH and H+ yield ATP when oxidized by the mitochondrial electron transport system. Acetyl CoA can also yield energy through oxidation. Overall reaction The overall reaction, using palmitoyl CoA (16:0) as a model substrate: Involvement of the beta-carbon in this and subsequent steps gives the pathway its name. There are three fatty acyl CoA dehydrogenases. Each is specific for a different acyl chain length, so different enzymes are involved in different stages of beta-oxidation. Long chain fatty acyl CoA dehydrogenase (LCAD) acts on chains greater than C12. Medium chain fatty acyl CoA dehydrogenase (MCAD) acts on chains of C6 to C12. Short chain fatty acyl CoA dehydrogenase (SCAD) acts on chains of C4 to C6. MCAD deficiency is thought to be one of the most common inborn errors of metabolism. Hydration of the double bond is catalyzed by enoyl CoA hydratase. The product is an L-3-hydroxyacyl CoA. 7 FAD + 7 NAD+ + 7 CoASH + 7 H2O + H(CH2CH2)7CH2CO-SCoA --> 8 CH3CO-SCoA + 7 FADH2 + 7 NADH + 7 H+ Fate of the acetyl CoA: Oxidation by the citric acid cycle to CO2 and H2O. In liver only, acetyl CoA may be used for ketone body synthesis. Fate of the FADH2 and NADH + H+: FADH2 and NADH + H+ are oxidized by the mitochondrial electron transport system, yielding ATP. A second dehydrogenation, of the alcohol, occurs in a NADlinked Reaction catalyzed by beta-hydroxyacyl CoA dehydrogenase. The product is a ketone. There are four individual reactions of beta-oxidation, each catalyzed by a separate enzyme. 1) Dehydrogenation between the alpha and beta carbons (C2 and C3) in a FAD-linked reaction. 2) Hydration of the double bond by enoyl CoA hydratase. 3) A second dehydrogenation in a NAD-linked reaction. 4) Thiolytic cleavage of the thioester by beta-ketoacyl CoA thiolase. Dehydrogenation occurs between the alpha and beta carbons (C2 and C3) in a FAD-linked reaction catalyzed by acyl CoA dehydrogenase. The product contains a trans- double bond. Thiolytic cleavage of the thioester is catalyzed by betaketoacyl CoA thiolase. The Thiolase Reaction: Thiolase (3-ketoacyl CoA thiolase) cleaves a long chain fatty acyl CoA, forming acetyl CoA and a long chain fatty acyl CoA that is two carbons shorter. Regulation: This reaction is inhibited by high concentrations of acetyl CoA. Reaction products: The products are acetyl CoA and a long chain fatty acyl CoA that is two carbons shorter than the original fatty acyl CoA. SECOND: 2,4-dienoyl CoA reductase reduces the compound, leaving one trans- double bond, but in the wrong position. NADPH + H+ is required. Beta-oxidation is regulated as a whole primarily by fatty acid availability; once fatty acids are in the mitochondria they are oxidized as long as there is adequate NAD+ and CoA. (Video sequence available) Additional Enzymes are Needed for Complete Oxidation of Unsaturated and Odd-Carbon Fatty Acids. - The action of enoyl CoA isomerase may be required. If there is a double bond at an odd-numbered carbon (e.g., 18:19), the action of enoyl CoA isomerase is required to move the naturally occurring cis- bond and convert it to the transbond used in beta-oxidation. Beta-oxidation now proceeds normally. Handling the three-carbon propionyl CoA. Fatty acids with an odd number of carbons in their chains require a means of handling the three-carbon propionyl CoA that is the final fragment produced by beta-oxidation of such a chain. The first step is carboxylation by the biotin-dependent propionylCoA coarboxylase in an ATP-requiring reaction. Generating a trans- double bond instead of a cis. If there is also a double bond at an even-numbered carbon (e.g., the second double bond in 18:2 9,12), the problem is to generate a trans-double bond instead of a cis-. This occurs in an indirect manner. Both activities occur in the mitochondrial matrix. FIRST: The cycles of beta-oxidation prior to the one involving the original 12 double bond act as previously described to get past the 9 double bond. Beta-oxidation then continues as usual through the acyl CoA dehydrogenase step of the next cycle, generating a transdouble bond at the 2 position. The D- isomer is then converted to the L- isomer by methylmalonyl CoA racemase. Ketone body synthesis from acetyl CoA occurs in hepatic mitochondria. The rate of the process increases in starvation. In the final step, the L- isomer is converted to succinyl CoA by methylmalonyl CoA mutase. The first step: The first step is formation of acetoacetyl CoA in a reversal of the thiolase step of beta-oxidation. Succinyl CoA can then be metabolized in the tricarboxylic acid cycle. A summary of the entire process is shown in the following scheme: X. Synthesis and utilization of ketone bodies Ketone body synthesis from acetyl CoA The second step:. In the second step, a third molecule of acetyl CoA condenses with the acetoacetyl CoA, forming 3hydroxy-3-methylglutaryl CoA (HMG CoA) in a reaction catalyzed by HMG CoA synthase. Since so much acetyl CoA is used in this process, its rate is very sensitive to acetyl CoA concentration. When [acetyl CoA] is high, ketone body synthesis is rapid. The third step: In the third step HMG CoA is cleaved to yield acetoacetate (a ketone body) in a reaction catalyzed by HMG CoA lyase (HMG CoA cleavage enzyme). One molecule of acetyl CoA is also produced. Acetoacetate can be reduced. Subsequently acetoacetate can be reduced to -hydroxybutyrate by -hydroxybutyrate dehydrogenase in a NADH-requiring reaction. The extent of this reaction depends on the state of the NAD pool of the cell; when it is highly reduced, most or all of the ketones can be in the form of -hydroxybutyrate. Acetone: Some acetoacetate spontaneously decarboxylates to yield acetone. The odor of acetone can be smelled on the breath of individuals with severe ketosis. Ketone body production is regulated primarily by availability of acetyl CoA. If mobilization of fatty acids from adipose tissue is high, hepatic beta-oxidation will occur at a high rate, and so will synthesis of ketone bodies.
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