Table S2. List of primers:
Primer Name
WW006-Ch2, 22kb::NAT p1
WW007-Ch2, 22kb::NAT p2
WW008-Ch2,122kb::NAT p1
WW009-Ch2,122kb::NAT p2
WW010-Ch2,212kb::NAT p1
WW011-Ch2,212kb::NAT p2
WW033-Ch2,220kb::NAT p1
WW034-Ch2,220kb::NAT p2
WW027-Ch2,252kb::NAT p1
WW028-Ch2,252kb::NAT p2
WW040-Ch2, 363kb::NAT p1
WW041-Ch2, 363kb::NAT p2
WW014-Ch2,420kb::NAT p1
WW015-Ch2,420kb::NAT p2
WW016-Ch2,532kb::NAT p1
WW017-Ch2,532kb::NAT p2
WW018-Ch2,721kb::NAT p1
WW019-Ch2,721kb::NAT p2
WW029-Ch2,729kb::NAT p1
Sequence
GCACATGTATATATTATACACTACTTATAACTAACCTTCTTCATATATAAga
tatcaagcttgcctcgtccccgc
ATTTTCTTTCATGATATGATTTAAATGCATTAGTATTATCAGGCATATTGc
gacactggatggcggcgttagtatc
GTTACCCGACTTTCTATATACTACAAATACCGCCAATGATGCAGTGAGCA
gatatcaagcttgcctcgtccccgc
CAGAGATGTTTCTACCTTACTCGATATTGTTTTTGCATTAATTGATATCTcg
acactggatggcggcgttagtatc
GACTACACACCTCCTCTGTCTGGAAGAAATAAATTCTTAGGGTCGACTCC
gatatcaagcttgcctcgtccccgc
CTCAGTCCCAATAATGTTTTATTGTCATATTATACTAAAGTTGAAATGGTc
gacactggatggcggcgttagtatc
CTGTTCAGTAGATATTATATGTAATTATAGCCTCAACAATTTTTCTTGGAg
atatcaagcttgcctcgtccccgc
TCAAACTAAGGAAAATCCAGCCTCTATGGGTGAATAGCTCATCCAATCG
Acgacactggatggcggcgttagtatc
ATCAGGTATTTTGTATTATTTTTTGCGCAACAGCAAGCAAACGCAATAGC
gatatcaagcttgcctcgtccccgc
GTTTGCTGCTATGTATCCTTGCTAAATTTTGATTATATTATGGCATTTATCc
gacactggatggcggcgttagtatc
AATTCTACGTTCTCAATGGTGGTGTTGAGCTCTAAATTATTTTACAATTTg
atatcaagcttgcctcgtccccgc
CCTCCTTAAAGGTCATGCTCCTTTTTATGGGTTCTCGTCGTAATAATCCTG
cgacactggatggcggcgttagtatc
CATGTACTGTAAGGCCCAAAAGGGCTCCAGGGATGCCCTTCTACAAAGg
atatcaagcttgcctcgtccccgc
GGGCGGGAGATGTTATTATGTAACGGGGCTTTTATTAGCATGTGAAATG
cgacactggatggcggcgttagtatc
ATAAATTGGAAGGATCTAAGCTAAAGTAAATTATGAATTGAATACTGCC
CTgatatcaagcttgcctcgtccccgc
GAGGATAACAGACTTGTTAAAAAGCATCCTGTCAAAATCTAATTTTTGAc
gacactggatggcggcgttagtatc
ACAAGAATTACTAGCCATATTTTCCCTTGTCAAATTAGAGAAGGAAAAAT
gatatcaagcttgcctcgtccccgc
CAGCTCCTATTGATATACTTTTAGTGCCCAAACACGGGATGTTTCAAGTA
cgacactggatggcggcgttagtatc
GTTTTACTAGCCAATATTCATTTTTTTTGAATCGATGTAAAATTTTTGgatat
caagcttgcctcgtccccgc
WW032-Ch2,768kb::NAT p2
GCATGAGCTTTCTGTAGAAATTTAACATTGTGCAATTTTTCTTGTATCcgac
actggatggcggcgttagtatc
CGAAATAGGTTCAATTCATACTCGAAAAGAATTCGAAGGACGCTCACAA
Ggatatcaagcttgcctcgtccccgc
ATGTGTGTGTTATGAAATGCATACGTTTCATGTTTGCCTAAAATCTCTTTc
gacactggatggcggcgttagtatc
ATAACAAAACATCGAAATCAGAGGATCATTCTAGATCAAAGTGAAATGC
Cgatatcaagcttgcctcgtccccgc
AATTATAATAACACTTCACAGCTATTTTCGTATTCCTTTTCATAGTTAAGcg
acactggatggcggcgttagtatc
WW020-Ch2, 22kb p1
WW021-Ch2,122kb p1
WW026-Ch2 212kb p1
WW035-Ch2, 220kb p1
WW036-Ch2, 252kb p1
WW044-Ch2, 363kb p1
WW023-Ch2, 420kb p1
WW024-Ch2, 532kb p2
WW025-Ch2, 721kb p1
WW037-Ch2, 729kb p1
WW045-Ch2,742kb p1
WW038-Ch2, 768kb p1
NATp1B
Leu2p18B
GTTAATCGCTTCCGTACTCGC
CTGAGAAACGTCACCTAATGTCG
CTACTGCATCAAATCCGTTTGG
CCCTTATGAACACGCACAGGC
CGGTTACTTTGTGACCCTTTGC
CTAGTCACAAACATCCGCATAGGC
GAAAGATTCTAGGCCGGGTCC
GATGAATGTGCACATGCTGTCG
CTTTAAGGAACTTTACTCCGCG
CAACGGACCGGGTAAAAAGCG
CGATATTGGGTCATTCTCGCCTG
AGAAAATCATCATCAAATAGCCGCC
AGGCGCTCTACATGAGCA
CCAAATAGGCAATGGTGGCT
WW030-Ch2,729kb::NAT p2
WW042-Ch2, 742kb::NAT p1
WW043-Ch2, 742kb::NAT p2
WW031-Ch2,768kb::NAT p1
WW046-Mcm21::MX p1
WW047-Mcm21::MX p2
WW048-Mcm21 DS p1
WW049-Mcm21 ORF p1
WW057-cen2::GAL-CEN3 p4
WW058-cen2::GAL-CEN3 p5
WW052-Chr2,237kb p1
WW053-Chr2,238kb p1
Leu2p18B
Mcm7p3
GGATAATGAGGGGAAAATGTGATTTCTTTACTTGAGCAATTCTTTCAAAC
CCAGATCTGTTTAGCTTGCC
CAGAGAAAATTAGCTCTATCCTCTTTCTATAAAGTATATTTTTGTTAACATt
ggatggcggcgttagtatc
GGAAATGGGATGGTGGGTTTGAC
CCAATGGGGGACTAGTGATATCTC
CGGTGAACAATTTTTTGCAAGAAATATATTGATACTTCTTGTTGAAATATT
GATGTCGGCGATATAGGCG
ACTAATATCAATAATAATAAATTAATCTTGAGCAAATTGATCCTACATAA
GAGGCCCTTTCGTCTTCAAG
CCATCTTCATTTCAAATAAGAGAGC
GGGCATTTCAGTAACATCTTCAAAC
CCAAATAGGCAATGGTGGCT
TGCGAAGCACAGGTGTTCACTTTC