Plasmid 68 (2012) 186–194 Contents lists available at SciVerse ScienceDirect Plasmid journal homepage: www.elsevier.com/locate/yplas Short Communication New multi-purpose high copy number vector with greater mitotic stability for diverse applications in fission yeast Schizosaccharomyces pombe Hemant Kumar Verma, Jagmohan Singh ⇑ Institute of Microbial Technology, Council of Scientific and Industrial Research (CSIR), Sector 39 A, Chandigarh 160036, India a r t i c l e i n f o Article history: Received 7 June 2012 Accepted 5 July 2012 Available online 15 July 2012 Communicated by Dr. Dhruba K. Chattoraj Keywords: Schizosaccharomyces pombe Copy number Mitotic stability Vector a b s t r a c t We have constructed a pUC19-based multipurpose ATG vector in Schizosaccharomyces pombe with higher copy number and mitotic stability possible with commonly used vectors. The vector, having an NdeI site in its polylinker to provide ATG site for expression, carries a greatly truncated version of URA3 gene, URA3m, of Saccharomyces cerevisiae as a selection marker. In addition, it contains the mat2P-right flank region (mat2P-RF) of S. pombe as an autonomous replicating sequence (ARS) and a polylinker with wider choice of restriction sites. While URA3m confers an increase in plasmid copy number up to 200 copies/cell, mat2P-RF imparts greater mitotic stability than the standard ars1 element of S. pombe. Finally, the vector also includes the transcription termination signal of the nmt1 gene (Tnmt1). This basic vector should serve as a versatile tool for studies of gene function in S. pombe. Ó 2012 Elsevier Inc. All rights reserved. 1. Introduction Vectors are fundamental tools in molecular biology and genetics that can be used to study different physiological and gene functions within the organism. Vectors can be used for mutagenesis of genes as well as overexpression studies. Schizosaccharomyces pombe has been extensively used for studies in cell biology, genetics and molecular biology and numerous vectors are in use today (Siam et al., 2004; Adams et al., 2005; Van Driessche et al., 2005). Vectors have great impact on protein productivity, which is governed by factors like plasmid copy number, plasmid stability and segregation efficiency (Clyne and Kelly, 1997). Plasmid copy number determines the gene dosage available for expression and thus generally leads to higher productivity (Friehs, 2004). Thus, both for obtaining high level commercial scale expression of proteins and studying gene function at high expression level, achieving higher copy number should be helpful. Auxotrophic markers such as ura4, his3, arg6, and ade6 have been commonly used in episomal vectors of S. pombe. ⇑ Corresponding author. Fax: +91 172 2690585. E-mail address: [email protected] (J. Singh). 0147-619X/$ - see front matter Ó 2012 Elsevier Inc. All rights reserved. http://dx.doi.org/10.1016/j.plasmid.2012.07.001 The LEU2 and URA3 genes of Saccharomyces cerevisiae are also useful markers, which complement leu1-32 and ura4D18 mutations, respectively in S. pombe (Grimm et al., 1988; Apolinario et al., 1993; Waddell and Jenkins, 1995; Adams et al., 2005). It is reported that plasmid copy number can be enhanced by truncation of promoter elements of the selection marker. In S. cerevisiae, the use of promoter-less URA3 marker and LEU2-d promoter created by removal of 50 -flanking sequence of LEU2 gene substantially increased the plasmid copy number (Loison et al., 1989; Steinborn et al., 2007). The commonly used DNA sequences required for autonomous replication of vectors as episomes include 2lm ori and ars1. The 2l ori, replication origin of the 2l plasmid of S. cerevisiae, provides approximately 5 copies/cell in S. pombe (Heyer et al., 1986; Wright et al., 1986). On the other hand, ars1 (autonomous replicating sequence) of S. pombe promotes extra-chromosomal autonomous replication and episomal maintenance of the plasmid. Plasmids containing ars1 are present in multiple copies per cell (15–80) but are mitotically unstable (Losson and Lacroute, 1983; Wright et al., 1986; Maundrell et al., 1988). In S. pombe, pREP series vectors are general purpose episomal vectors that contain the ars1 replication origin and ura4 H.K. Verma, J. Singh / Plasmid 68 (2012) 186–194 or LEU2 as the selectable marker (Forsburg, 1993). Therefore, there is still a need to develop a vector with greater copy number and mitotic stability that will ultimately result in increases in the gene copy number and thereby a higher level of expression of proteins. In this study, we report the construction of a multi-purpose ATG vector with higher copy number and mitotic stability than the existing vectors that can be used as expression vector after cloning of promoters and inserting genes from homologous and heterologous origin downstream, for constructing genomic and cDNA expression libraries and other important genes of interest into the multiple cloning sites provided in this vector. 2. Materials and methods 2.1. Strains and media E.coli strain Top10F’ (Invitrogen, USA) and S. pombe wild type strain SPJ25 (Msmto leu1-32 ura4D18 ade6-210 his2) were used in this study. Yeast growth medium (YEA) and selective minimal medium (PMA) supplemented with appropriate amino acids (Moreno et al., 1991), and bacterial LB and TB media (Sambrook et al., 1989) were used for growth and maintenance of cultures. 2.2. Design of mitotically stable and high copy number vector As a part of this study, we intended to generate an ATG vector with higher copy number as well as greater mitotic stability. First, we constructed the pUC19-based shuttle vector, pJS1 (Fig. 1A), which contained ura4 as the selection marker, ars1 as the origin of replication and multiple cloning sites. To construct a vector with desired complete features, we cloned new selection marker, ARS element and a polylinker containing additional restriction sites. A schematic picture of the vector series is shown in Fig. 1. The steps involved in the construction are described below: 2.2.1. Insertion of new multiple cloning sites (MCS) The NdeI site located in the vector backbone was destroyed by Klenow-fill-in reaction, as we propose to include an NdeI site in the MCS to provide start codon ATG for any gene of interest cloned downstream of the promoter. The NdeID vector was designated as pJHI (Fig. 1B). A newly synthesized polylinker to provide a wider choice of restriction sites in the order SphI-NdeI-XbaI-KpnI-PstISalI-AfeI-XhoI-StuI-BamHI-SmaI-SacI was inserted into vector pJHI while replacing the existing polylinker (SphIPstI-XhoI-SalI-BamHI-SmaI-SacI) at sites SphI/ SacI. The resulting vector was named as pJH2 (Fig. 1C). 2.2.2. Selection marker We inserted the URA3 gene of S. cerevisiae with its minimal regulatory sequences in the vector. We amplified the 918 bp region, consisting of 45 bp upstream to 69 bp downstream of the URA3 gene, by PCR, using primers 50 ATGCAAGCTTACCCAACTGCACAGAAC-30 (forward) and 50 ATGCAAGCTTCTGATATAATTAAATTGAAGC-30 (reverse), having HindIII restriction sites, using S. cerevisiae genomic 187 DNA as the template and named it as URA3m. The resulting PCR product was sub-cloned in the pJET1.2 vector (CloneJET PCR Cloning Kit, Fermentas, USA) and sequenced to confirm the correctness of sequence. The URA3m fragment was excised with HindIII from the pJET1.2 vector and cloned at HindIII site in the vector pJH2 by replacing the ura4 selectable marker. The resulting vector with URA3m marker was named as pJH3 (Fig. 1D). 2.2.3. ARS element As a putative ARS element (Olsson et al., 1993), we excised the 1.3 Kb NcoI/HindIII fragment of right flank of mat2-P (mat2P-RF) from the plasmid pSP10 (Kelly et al., 1988) containing the 6.4 Kb HindIII region of mat2-P locus. The fragment was blunt-ended by Klenow-fill-in reaction and inserted into the blunt-ended EcoRI site of vector pJH3, thus replacing the EcoRI fragment containing ars1 in the vector pJH3 with the mat2P-RF ARS to yield the vector pJH4 (Fig. 1E). 2.3. Quantitation of plasmid copy number To check the plasmid copy number, vectors pWH5, pJH2, pJH3 and pJH4 were introduced into the S. pombe wild type strain SPJ25 by the DNA-mediated transformation procedure (Moreno et al., 1991). The vector pWH5 containing 2l ori and LEU2 selection marker, which exists at 5 copies per cell in S. pombe (Heyer et al., 1986; Wright et al., 1986) served as a copy number control. Total genomic DNA of the transformants was isolated and quantitated visually in 0.8% agarose gel on UV transilluminator or spectrophotometrically on nanodrop (ND-1000, USA). To plot a standard curve for quantitation, a known amount of genomic DNA (ranging from 0.5 to 4 lg) of the strain harboring the plasmid pWH5 was hybridized in duplicate on nylon membrane (Amersham Biosciences, USA). To check the copy number of vectors pJH2, pJH3 and pJH4, varying amounts of genomic DNA of the respective transformants required to achieve radioactive band intensity, upon hybridization, in the linear range of the pWH5 standard, were standardized. Accordingly, 100 ng of genomic DNA of the strains having plasmids pJH2, pJH3 and pJH4 was hybridized in quadruplicate. Furthermore, 25 ng of linearized 2.6 Kb pUC19 DNA was radio-labeled with [a-32P] dCTP by random priming and hybridized with the blotted DNA. Band intensities were measured in PSL/mm2 by densitometric analysis on Phosphoimager (FUJIFILM FLA-9000, Japan). A standard curve was plotted between radioactive band intensity (in PSL/mm2) and the amount of genomic DNA for the vector pWH5. The copy number of plasmids pJH2, pJH3 and pJH4 was calculated by comparing the average of the band intensities (PSL/mm2) with the standard curve. 2.4. Determination of ARS activity/transformation efficiency in S. pombe To determine the transformation efficiency of the vectors with different ARS elements 0.1 lg DNA of each plasmid (pWH5 containing 2l ori of S. cerevisiae, pJH2, pJH3 both containing ars1 and pJH4 containing mat2P-RF of S. 188 H.K. Verma, J. Singh / Plasmid 68 (2012) 186–194 Fig. 1. Schematic representation of vector series described in this study. (A) Vector pJS1 was modified to generate vector with increased copy number and mitotic stability. (B) To generate ATG vector, the NdeI site located in the vector was destroyed by Klenow-fill-in reaction, yielding the vector pJH1. (C) Newly synthesized polylinker was inserted by replacing existing MCS at SphI/SacI sites, resulting in vector pJH2. (D) To increase the vector copy number S. cerevisiae URA3 auxotrophic marker with its minimal promoter sequence, URA3m, was PCR amplified and cloned at HindIII site by replacing existing S. pombe ura4 marker, resulting in vector pJH3. (E) Furthermore, S. pombe ars1 was replaced by mat2P-RF resulting in the vector pJH4. The 1.3 Kb mat2P-RF (NcoI/HindIII) fragment was excised out from pSP10 (vector having 6.4 Kb HindIII region of mat2P), blunt-ended by Klenow-fill-in reaction and ligated into the blunt-ended vector, generated after ars1 removal by EcoRI digestion followed by Klenow-fill-in reaction. H.K. Verma, J. Singh / Plasmid 68 (2012) 186–194 pombe) was transformed into S. pombe wild type strain, which was auxotrophic for leu1 and ura4 genes, using lithium acetate method (Moreno et al., 1991). Approximately 1 108 cells were used for each transformation and plated on the selective plates (PMA-leu or PMA-ura). These plates were incubated at 30 °C and after 5 days, transformants were counted. Three such individual transformations were carried out and colony counts (transformants/ lg of plasmid DNA) were averaged. 2.5. Determination of mitotic stability of plasmids The mitotic stability of plasmids was determined according to Clyne and Kelly (1997). Transformants were grown in selective media at 30 °C. After 24 h of growth, these cultures were diluted to final cell density of 1 103 cells/ml (based on 1 OD = 2 107 cells/ml; Clyne and Kelly, 1997) and plated on complete plates (PMA) and selective plates (PMA-leu or PMA-ura). Plates were incubated at 30 °C for 3–4 days and the percentage of plasmid containing cells (F0) on selective plates was determined. Each value plotted was an average of at least three independent experiments. 2.6. Determination of plasmid loss rate in S. pombe Plasmid loss rate was determined according to Clyne and Kelly (1997). Cultures grown for 24 h at 30 °C in selective media were diluted to 1:1000 into non selective/complete media (PMA) and grown further for 15 generations at 30 °C. After two days these cultures were diluted to 1 103 cells/ml and plated onto selective plates (PMA leu/ura) and nonselective/complete plates (PMA) and incubated for 2–3 days at 30 °C. The percentage of plasmid-containing cells (F1) under non-selective conditions was determined. Plasmid loss rate per generation was calculated by using the following equation according to Longtine et al. (1992): Loss rate = 2{1exp [(1/n) ln (F1/F0)]}, where n is the number of generations between measurements F0 and F1. Loss rate was plotted an average of at least three independent experiments. 3. Results 3.1. Study of ARS activity/transformation efficiency in S. pombe We first compared the transformation efficiency of different plasmids constructed by us. We found that plasmid pWH5 (2l) was not as efficient as plasmids pJH2 and pJH3 containing ars1, which showed almost 2-fold higher transformation efficiency. Among ars1-containing plasmids, pJH3 showed slightly higher transformation efficiency than pJH2. This small difference could be due to the effect of selection marker (URA3m). Furthermore, transformation efficiency was approximately 2-fold higher in case of the vector pJH4 having mat2P-RF as compared to the vectors pJH2 and pJH3 and almost 4-fold higher as compared to the vector pWH5 (Fig. 2). 189 3.2. Mitotic stability of plasmids Next we compared the mitotic stability of plasmids. Interestingly, the mitotic stability of plasmid pJH4 (containing mat2P-RF) was estimated to be approximately 2fold higher than the plasmid pWH5 and approximately 1.4-fold higher than that of ars1-containing plasmids. A slight difference was observed in the stability of plasmids pJH2 and pJH3: the latter shows a slightly but consistently greater mitotic stability (Fig. 3). 3.3. Plasmid loss rate in S. pombe Plasmid stability can be affected both by the copy number and the segregation efficiency of the vector. However, this difference should not be problem when culture is grown in selective media. We found that plasmid pWH5 (2l ori) showed an almost 2-fold greater rate of plasmid loss as compared to the ars1-containing plasmids pJH2 and pJH3, indicating lack of efficient segregation of 2l plasmids in S. pombe. The ars1-containing plasmids showed lower plasmid loss rate probably indicating their improved segregation function and stability (Fig. 4). Surprisingly, although plasmid pJH4 containing mat2P-RF showed maximum mitotic stability, it also showed a slightly higher loss rate as compared to plasmids having ars1. 3.4. S. cerevisiae URA3m marker causes increase in plasmid copy number in S. pombe DNA hybridization experiment showed that the plasmid pJH2 with ars1 was present at 50 copies/cell, 10-fold higher than pWH5. Interestingly, the copy number of vectors pJH3 and pJH4 having URA3m was estimated to be 200 copies/cell (Fig. 5). Thus, copy number increased by at least 4-fold when S. pombe ura4 was replaced with URA3m (S. cerevisiae marker with its minimal promoter sequence). The vector pJH4 showed no significant increase in copy number as compared to pJH3 indicating an almost similar replication efficiency of ars1 and mat2P-RF elements of S. pombe (Fig. 5) although the latter has greater mitotic stability. Based on greater mitotic stability demonstrated above, we constructed the basic high copy ATG vector with truncated selectable marker URA3m and ARS element mat2PRF. 3.5. Insertion of nmt1 terminator sequences (Tnmt1) Transcription terminator is required for efficient transcription termination and polyadenylation of the mRNA of any gene of interest that one wishes to express. Therefore, we inserted terminator sequences of nmt1 gene of S. pombe into our basic vector pJH4. We isolated the 1 Kb SmaI/SacI fragment containing nmt1 transcription terminator and polyadenylation signal from the vector pREP3X (Maundrell, 1993) and inserted into the MCS of pJH4 plasmid at SmaI/SacI sites. The resulting vector with nmt1 terminator was designated as pJH5 (Fig. 6). 190 H.K. Verma, J. Singh / Plasmid 68 (2012) 186–194 Fig. 2. Comparison of transformation efficiency of different plasmids. One hundred nanograms of each plasmid pWH5 (2l, LEU2), pJH2 (ura4, ars1), pJH3 (URA3m, ars1) and pJH4 (URA3m, mat2P-RF) was transformed into S. pombe wild type strain with leu1–32, ura4D18 mutations. Number of transformants obtained from three different experiments were averaged and plotted (upper panel). Lower panel represents photographs of transformants, grown on respective media plates. 4. Discussion The broad objective of our study was to construct a multi-purpose ATG vector with greater mitotic stability and copy number in comparison with the available vectors of S. pombe. While ATG codon provides translational start site, mitotic stability and high copy number of vectors are basic requirements for high level expression of pombe genes and for achieving higher and stable product yield of heterologous proteins. Several reports suggest that copy number can be increased using a defective promoter element for expression control of a selection marker (Loison et al., 1989; Kjaerulff and Jensen, 2005; Steinborn et al., 2007). For example, an attenuated version of URA3, named URA3d, containing some of the proximal mRNA start site sequences showed a 1.5–2-fold increase in copy number as compared to the vectors containing wild type URA3 and ura4 (Kjaerulff and Jensen, 2005). In the present study, in order to develop a vector with even higher copy number, we tested an even more severely truncated URA3 gene, URA3m, with only the minimal possible promoter element of URA3 gene. By using URA3m we have successfully increased the copy number of an ars1/mat2P-RF-containing vector by at least 2.5–13-fold (200 copies/cell) as compared to plasmid containing ura4, as the reported copy number of the currently used ars1-vectors in S. pombe lies in range of 15–80 copies/cell (Giga-Hama et al., 1994). It has been reported that mat2P-RF (right flank) has high ARS-like activity (Olsson et al., 1993). Therefore, we tested it by using different parameters like transformation efficiency, mitotic stability and plasmid loss rate. We found that mat2P-RF confers greater transformation efficiency (Fig. 2, compare pJH3 and pJH4) and mitotic stability (Fig. 3), while it confers slightly greater plasmid loss rate than ars1 (Fig. 4). On the other hand, we found no significant difference between mat2P-RF and ars1 of S. pombe in H.K. Verma, J. Singh / Plasmid 68 (2012) 186–194 191 Fig. 3. Mitotic stability of plasmids containing different ARS elements. Transformants containing different plasmids (as indicated) were grown at 30 °C in selective minimal media (PMA-leu or PMA-ura). After 24 h of growth, 1 103 cells/ml were plated on complete (PMA) and selective plates (PMA-leu or PMA-ura). After 2–3 days, percentage of leu+ or ura+ colonies were calculated and plotted. Each value is an average of at least three measurements. Fig. 4. Loss rate of plasmids containing different ARS elements. Cultures of strains containing the indicated plasmids were grown in selective media for 24 h, diluted to 1:1000 before being inoculated into non-selective complete media (PMA) and grown for 15 generations. Approximately 1 103 cells/ml were plated on complete (PMA) and selective plates (PMA-leu or PMA-ura). Loss rate per generation was calculated according to Longtine et al. (1992). 192 H.K. Verma, J. Singh / Plasmid 68 (2012) 186–194 Fig. 5. Determination of vector copy number. (A) Standard graph of pWH5. A known copy number plasmid pWH5 (5 copies/cell) was taken as reference. 0.5–4 lg of genomic DNA of S. pombe wild type strain harboring pWH5 was hybridized in duplicates on nylon membrane with radio-labeled probe of linear pUC19 vector. Band intensities were calculated by densitometric analysis on phosphoimager. Average of band intensity in PSL/mm2 on Y-axis was plotted against the genomic DNA of the S. pombe strain having pWH5. Total DNA concentration was taken in log2 scale at X-axis. (B) To quantitate the vector copy number dot-blot assay was done. 100 ng of genomic DNA was hybridized as slot-blot on nylon membrane in quadruplets. 25 ng of linear pUC19 vector was radio-labeled and used as probe. The radio-active band intensity was calculated by densitometric analysis on phosphoimager and average of bands intensity (PSL/mm2) was taken to estimate the copy number. conferring high copy number, which seems to be mainly due to the URA3m marker with minimal promoter. Previously, a G418-based selection system was developed to select the cells with high plasmid copy number up to 170 copies/cell (Giga-Hama et al., 1994). This system allowed selection for increasing copy number with increasing concentration of the antibiotic G418. However, both from industrial point of view and carrying out basic physiological experiments, the use of costly antibiotics is not cost-effective. Our approach to increase the copy number avoids the use of antibiotics. Thus, our high copy vector should be useful for experiments involving high level expression of proteins. Furthermore, besides being more cost-effective, commercial use of this vector would be in better compliance with the guidelines for pharmaceutical protein production. The vector could potentially cause derepression of the chromosomal mat2P locus in the strain having stable mat1 M locus, owing to sequestration of silencing factors by the mat2P-RF on a high copy plasmid. However, lack of haploid meiosis phenotype in the transformants rules out that possibility (not shown). The new vector has some additional advantages. The transformation efficiency of plasmid pJH4-mat2P-RF is almost 2-fold higher than the ars1-containing plasmids (pJH3 and pJH4) and 4-fold higher than the plasmid pWH5-2l. Although high-frequency transformation is a desirable characteristic of an ARS element, transformation frequency may be affected by factors other than the intrinsic replication activity of an ARS element (Clyne and Kelly, 1997). Other assays have been developed in an attempt to obtain more quantitative measure of ARS function. The H.K. Verma, J. Singh / Plasmid 68 (2012) 186–194 193 Fig. 6. Construction of the ATG vector pJH5 having greater mitotic stability and copy number. The Tnmt1 fragment containing the 1 Kb transcription terminator and polyadenylation signal of nmt1 gene of S. pombe was isolated from pREP3X vector by restriction digestion with SmaI/SacI and inserted into SmaI/SacI sites in the MCS of the plasmid pJH4 by standard ligation procedure. Resulting vector with Tnmt1 terminator was designated as plasmid pJH5. most commonly employed assays are mitotic stability and plasmid loss rate. Our data suggest that plasmid pWH5-2l was more unstable in S. pombe as compared to ars1 (pJH2 and pJH3) and mat2P-RF (pJH4) containing plasmids. Interestingly, mat2P-RF containing plasmid pJH4 showed more than twofold greater stability in comparison with plasmid pWH5 (2l ori) and approximately 1.4-fold higher than plasmid pJH2 (ars1) of S. pombe. The slight difference in mitotic stability of vector pJH3 and pJH2, while both plasmids contain ars1, might be due to the selection marker URA3m (pJH3); the defective promoter may augment the plasmid copy number by selection and thus enhance the apparent plasmid stability indirectly. In addition, we found that plasmid loss rate per generation was maximum, approximately 2-fold higher, in case of plasmid pWH5-2l as compared to plasmids containing ars1 (pJH2 and pJH3). We observed an almost similar rate of plasmid loss in case of vectors pJH2 and pJH3 although they have different copy numbers. It has been noticed that plasmids with different copy number may have same plasmid loss rate and increasing the plasmid copy number does not necessarily decrease plasmid loss rate (Longtine et al., 1992). We have made similar observations in our study. We observed that the loss rate was also slightly higher in case of plasmid pJH4 (mat2P-RF) in comparison with ars1-bearing plasmids pJH2 and pJH3 but the two plasmids had comparable level of mitotic stability. In S. pombe, difference in the rate of loss of plasmids containing various ARS elements is due to unequal partitioning of newly replicated plasmids to the daughter cells during cell division. The rate of plasmid loss with different ARS elements is largely a function of the efficacy of its replication. However, even plasmids containing efficient ARS elements display mitotic stability <100%. In budding yeast, only 43% cells on average retained ARS1-plasmids in plasmid stability assay (Marahrens and Stillman, 1992). Moreover, such assay 194 H.K. Verma, J. Singh / Plasmid 68 (2012) 186–194 can provide more sensitive measure of ARS activity than the standard transformation assay. It is reported, that certain mutations in the budding yeast ARS1 do not dramatically affect transformation frequency, but significantly increase the rate of plasmid loss per generation (Marahrens and Stillman, 1992). Thus, we conclude that we have obtained new vector pJH4 containing URA3m selection marker and mat2P-RF as an ARS element, having higher transformation frequency and mitotic stability. The final vector pJH5 was derived by inserting the nmt1 terminator sequence into pJH4 as described in Section 2. The vector pJH5 can serve as a platform for multiple applications. First, it can be used to construct high copy genomic and cDNA libraries that could be useful for complementation studies and to study the effect of high level over-expression of genes on physiology of S. pombe cells and for cloning genes by complementation. Second, we can generate a high copy promoter library between SphI and NdeI sites, while suitable reporters can be cloned using NdeI site to provide the first ATG codon. Such a library could be useful for screening for new pombe promoters. Lastly, given the hitherto highest reported copy number of any plasmid without any drug marker, these vectors could be developed for heterologous gene expression by cloning of strong promoters between SphI and NdeI sites and the gene of interest between NdeI (for providing ATG codon) and suitable downstream sites in the polylinker. One limitation of this study is that we have not cloned regulatable promoters in the polylinker. 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