Example 1:
Example of missing axioms
ZFA
ZFS
Axioms in ZFS hidden for ZFA despite of re-using terms
Example 2:
Example of type of re-use
Implicit reuse
Explicit re
ZFA
http://purl.obolibrary.org/obo/ontoloty_ZFA_3985036677673980580
ZFS
(46)
ZFA
(3031)
CDAO
IAO (6
http://purl.obolibrary.org/obo/cdao.owl
http://purl.obolibrary.org/obo/iao/ontology-metadata.owl
CDAO
(131)
BFO (6
UBERO
(408)
UBERON
(72)
CEPH
http://purl.obolibrary.org/obo/ceph.owl
http://purl.obolibrary.org/obo/ceph/taxonomy.owl
http://purl.obolibrary.org/obo/ceph/imports/imports/uberon_import.owl
http://purl.obolibrary.org/obo/ceph/imports/imports/go_import.owl
http://purl.obolibrary.org/obo/ceph/imports/ro_import.owl
http://purl.obolibrary.org/obo/ceph/imports/imports/cl_import.owl
CEPH
(325)
NCBI Taxon
(5)
GO (6)
GO (20
CL (2)
CL (4)
NCBI Ta
(812
Format 1:
Example of information extracted for each ontology
Num Ontologies
Download Errors
Load Ontologies Error
144
3 (141)
18 (123)
CMF, EPO, XL
3 deshabilitadas por tiempo, el resto fallos en los imports o formato incorrecto
Ontologies that do not
follow the URIs-OBOPrinciple (Imports
closure=FALSE)
Ontologies that do not
follow the URIs-OBOPrinciple (Imports
closure=TRUE)
Ontologies that do not
follow the URIs-OBOPrinciple (Imports
closure=TRUE and FALSE)
55
10
5
Query 1:
URIs principle
Ontologies that do not follow the URIs-OBO-Principle (Imports closure=FALSE)
50
63
5
5
Ontologies that do not follow the URIs-OBO-Principle (Imports closure=TRUE)
Ontologies that do follow the URIs-OBO-Principle (Imports closure=TRUE and FALSE)
Query 2:
Type of Re-use
Ontologies
that do not
re-use
Ontologies
that do re-use
49
75
Ontologies
that make
implicits
imports
Ontologies that
make explicit
imports
Ontologies that
make implicit and
explicit imports
74
37
36
Ontologies that do not re-use
49
Ontologies that make implicits imports
38
36
1
Ontologies that make explicit imports
Query 3: Average term re-used by ontology
Implicit
Explicit
Num Terms
re-used
Num Terms re-used if
modular strategy is used
NºTerms in Dst
Ontology
(imports_closur
e=FALSE)
1
1.0
35
1st Qu.
29.5
90.5
Median
116
63
ont.
Min.
Mean
3rd Qu.
Max.
63
ont.
Min.
Num Terms
re-used
Num Terms re-used if
modular strategy is used
NºTerms in Dst
Ontology
(imports_closur
e=FALSE)
Min.
1
1
35
6 792
1st Qu.
54
170.8
13 720
403
98 030
Median
240
612
92 680
855.3
2 016
155 400
Mean
1 210
2 376
150 700
476.5
2 259
165 900
644.2
2 776
164 600
19 030
19 880
632 500
19 030
19 880
579 700
Num axioms re-used if
modular strategy is used
Nº Axioms in
Dst Ontology
(imports_closur
e=FALSE)
2
167
Num axioms if modular
strategy is used
Nº Axioms in
Dst Ontology
(imports_closur
e=FALSE)
56
ont.
3rd Qu.
Max.
56
ont.
Min.
2
167
1st Qu.
1 120
53 000
1st Qu.
2 497
119 600
Median
4 368
822 000
Median
6 312
825 100
Mean
24 030
1 510 000
Mean
28 040
1 506 000
3rd Qu.
29 070
1 960 000
3rd Qu.
30 740
1 923 000
Max.
205 100
5 630 000
Max.
127 600
5 096 000
Query 4: Average axioms referencing the reused terms by ontology
Implicit
63
ont.
Min.
Num Terms
re-used
Referencing axioms in SRC
of DST Ontology Terms
Referencing axioms in DST
of Src Mapped ontology
terms
Referencing axioms in DST
of Src Mapped ontology
terms MINUS Referencing
axioms in SRC of
DSTOntology Terms
1
3
4
0
1st Qu.
29.5
173
483.5
415.5
Median
116
792
6 293
5 193
Mean
855.3
13 740
20 290
17 900
3rd Qu.
476.5
4 964
25 120
23 960
Max.
19 030
263 500
157 600
121 000
56
ont.
Num Terms
re-used
Referencing axioms in SRC
of DST Ontology Terms
% Potential
Axioms
(C4/C3*100)
Explicit
Referencing axioms in DST
of Src Mapped ontology
terms
Referencing axioms in DST
of Src Mapped ontology
terms MINUS Referencing
axioms in SRC of
DSTOntology Terms
Min.
1
0
4
0
1st Qu.
54
309.8
1 202
1 180
Median
240
1184
9 820
7 856
Mean
1210
15 420
27 710
25 020
3rd Qu.
644.2
5284
27 580
25 450
Max.
19 030
263 500
240 100
240 100
% Potential
Axioms
(C4/C3*100)
Implicit
Query 4: Average axioms referencing the reused terms by ontology (II)
63
ont.
Mean number of referencing axioms in the source
ontology to the reused terms by axioms types
Mean number of hidden axioms by
axioms types
1.
2.
3.
4.
5.
6.
7.
8.
9.
10.
1.
2.
3.
4.
5.
6.
7.
8.
Explicit
SubClassOf=6914.25
AnnotationAssertion=5354.33
EquivalentClasses=1441.92
ClassAssertion=7.85
DisjointClasses=5.58
ObjectPropertyRange=5.26
ObjectPropertyDomain=5.11
DataPropertyDomain=0.71
DisjointUnion=0.06
Rule=0.01
SubClassOf=9939.79
AnnotationAssertion=5809.77
EquivalentClasses=2108.25
DisjointClasses=34.22
ClassAssertion=6.17
ObjectPropertyDomain=1.49
ObjectPropertyRange=1.44
DataPropertyDomain=0.11
56
ont.
Mean number of referencing axioms in
the source ontology to the reused terms
Mean number of hidden axioms
1. SubClassOf=7766.33
2. AnnotationAssertion=6009.08
3. EquivalentClasses=1617.80
4. ClassAssertion=8.82
5. DisjointClasses=6.28
6. ObjectPropertyRange=4.58
7. ObjectPropertyDomain=4.46
8. DataPropertyDomain=0.75
9. DisjointUnion=0.07
10. Rule=0.017
1.
2.
3.
4.
5.
6.
7.
8.
SubClassOf=13190.30
AnnotationAssertion=9131.32
EquivalentClasses=2637.92
DisjointClasses=48.92
ClassAssertion=8.23
ObjectPropertyDomain=1.55
ObjectPropertyRange=1.35
DataPropertyDomain=0.10
END