International Journal of Molecular Sciences Technical Note Impact of Premature Senescence on Radiosensitivity Measured by High Throughput Cell-Based Assays Razmik Mirzayans *, Bonnie Andrais and David Murray Department of Oncology, University of Alberta, Cross Cancer Institute, Edmonton, AB T6G 1Z2, Canada; [email protected] (B.A.); [email protected] (D.M.) * Correspondence: [email protected]; Tel.: +1-780-432-8897 Received: 11 June 2017; Accepted: 1 July 2017; Published: 6 July 2017 Abstract: In most p53 wild-type human cell types, radiosensitivity evaluated by the colony formation assay predominantly reflects stress-induced premature senescence (SIPS) and not cell death (Int. J. Mol. Sci. 2017, 18, 928). SIPS is a growth-arrested state in which the cells acquire flattened and enlarged morphology, remain viable, secrete growth-promoting factors, and can give rise to tumor-repopulating progeny. The impact of SIPS on radiosensitivity measured by short-term assays remains largely unknown. We report that in four p53 wild-type human solid tumor-derived cell lines (HCT116, SKNSH, MCF7 and A172): (i) the conventional short-term growth inhibition assay (3 days post-irradiation) generates radiosensitivity data comparable to that measured by the laborious and time-consuming colony formation assay; (ii) radiation dose-response curves obtained by multiwell plate colorimetric/fluorimetric assays are markedly skewed towards radioresistance, presumably reflecting the emergence of highly enlarged, growth-arrested and viable cells; and (iii) radiation exposure (e.g., 8 Gy) does not trigger apoptosis or loss of viability over a period of 3 days post-irradiation. Irrespective of the cell-based assay employed, caution should be exercised to avoid misinterpreting radiosensitivity data in terms of loss of viability and, hence, cell death. Keywords: ionizing radiation; p53 signaling; premature senescence; viability; proliferation; apoptosis; colony forming ability; MTT; XTT; CellTiter-Blue 1. Introduction Activation of the p53 signaling pathway by ionizing radiation was originally proposed to result either in cell cycle checkpoint activation to facilitate DNA repair and promote survival, or in apoptotic cell death (e.g., [1]). Based on this two-armed model, radiosensitivity assessed by multiwell plate colorimetric/fluorimetric assays (e.g., MTT, XTT, CellTiter-Blue) would be expected to reflect cell death. Accordingly, the outcomes of such radiosensitivity (and indeed chemosensitivity) assays are often interpreted to reflect loss of viability and hence cell death. However, such an assumption may be misleading. As extensively reviewed recently [2–4], a large body of evidence has established that the primary response triggered by moderate doses of ionizing radiation (between 2 and 8 Gy) in solid tumor-derived cell lines is in fact a sustained proliferation block, and not apoptosis. The proliferation block predominantly reflects stress-induced premature senescence (SIPS) in cells that express wild-type p53 [5–9]. SIPS is a sustained growth arrested state characterized by the acquisition of flattened and enlarged cell morphology in cells that retain viability for a long time (months) post-treatment and acquire the ability to secrete factors that can promote proliferation and invasiveness in cell culture models and tumor development in vivo [10,11]. In addition, under some conditions, cancer cells undergoing SIPS can give rise to stem cell-like progeny, thereby contributing to cancer relapse following therapy [3,12,13]. Thus, although cancer cells undergoing SIPS might be scored as “dead” in the short-term (colorimetric) Int. J. Mol. Sci. 2017, 18, 1460; doi:10.3390/ijms18071460 www.mdpi.com/journal/ijms Int. J. Mol. Sci. 2017, 18, 1460 2 of 12 and long-term (colony formation) assays in vitro, and can potentially contribute to tumor-growth delay in animal model studies, the senescence-like growth-arrested response (tumor dormancy) may in fact represent an important cell-survival mechanism, ultimately resulting in tumor regrowth and disease recurrence [2,3,14,15]. The p21WAF1 (p21; also called CDKN1A) protein is the founding member of the CIP/KIP family of cyclin-dependent kinase (CDK) inhibitors [16,17]. It is a p53 transcriptional target that plays a pivotal role in the DNA damage surveillance network, not only by activating early cell cycle checkpoints, but also through suppressing apoptosis (e.g., by inhibiting caspases), switching on the SIPS program, and contributing to the maintenance of the sustained growth arrested response, a hallmark of SIPS [18,19]. Consistent with these multifunctional properties of p21, radiosensitivity as measured by the colony formation assay in most cell types that express wild-type p53 (e.g., skin fibroblast strains; solid tumor-derived cell lines) is shown to be largely, if not totally, associated with growth arrest through p21-mediated SIPS [2,3,6,7,20]. The purpose of the present study was to determine the impact of SIPS on radiosensitivity when evaluated by short-term tests in the commonly-used p53 wild-type cancer cell lines HCT116 (colon carcinoma), MCF7 (breast carcinoma), SKNSH (neuroblastoma), and A172 (malignant glioma). These cell lines are known to respond to moderate doses of ionizing radiation (e.g., 8 Gy) by exhibiting sustained nuclear accumulation of p21, coupled with growth arrest through SIPS. We demonstrate that radiosensitivity as measured by multiwell plate colorimetric/fluorimetric assays is markedly skewed towards radioresistance when compared to that measured by growth inhibition (3 days post-irradiation) and colony formation (10 days post-irradiation) assays, and that the response measured by these cell-based assays reflects growth inhibition (SIPS) and not apoptosis or loss of viability. 2. Results and Discussion 2.1. Colony Formation and Growth Inhibition Assays Indicate a Comparable Degree of Radiosensitivity in p53 Wild-Type Cancer Cells The colony formation assay (also called clonogenic survival) for assessment of radiosensitivity in cultured human cells was developed by Puck and Marcus over half a century ago [21]. It has since been used for studying the effectiveness of different agents (radiation, chemicals, or a combination of the two) on the survival and proliferation of various mammalian cell types. The typical assay for evaluating radiosensitivity involves preparing a single-cell suspension from a monolayer culture, plating out cells at very low densities (e.g., 300 cells per 60-mm tissue culture dish), exposing them to graded doses of ionizing radiation, and incubating them for 10–14 days to allow the formation of macroscopic colonies, each comprised of aggregates of at least 50 cells. The reduction in macroscopic colony number in irradiated compared to sham-treated samples reflects the degree of radiosensitivity, i.e., loss of reproductive potential. We have performed pilot experiments with skin fibroblast strains and cancer cell lines and found that irradiating the cells either prior to seeding them at cloning densities or shortly afterwards (within ~4 h post-plating for cancer cell lines [22]) does not impact on the outcome of the assay (unpublished observations). As alluded to earlier, in most cell types, activation of the p53 pathway in response to moderate doses of ionizing radiation (e.g., 8 Gy) results in activation of early cell cycle checkpoints, suppression of apoptosis and sustained growth arrest through SIPS [2–4]. Consistent with these observations, radiosensitivity as measured by the colony formation assay in normal fibroblast strains and p53 wild-type solid tumor-derived cell lines has been shown to primarily reflect p21-dependent growth arrest through SIPS, and not cell death [2,3,6,7,20]. We predicted that the long-term clonogenic assay and the short-term (3 days post-irradiation) growth inhibition assay involving cell counting would indicate a comparable degree of radiosensitivity in p53 wild-type cells, given that the same p53 downstream effector (p21) is responsible for activating both early growth arrest (checkpoints) and sustained growth arrest (SIPS). The results presented in Figure 1 support this interpretation for the p53 wild-type lines MCF7, HCT116, SKNSH and A172. For each cell line, radiation doses resulting in 50% Int. J. Mol. Sci. 2017, 18, 1460 Int. J. Mol. Sci. 2017, 18, 1460 3 of 12 3 of 11 effectcell (Inhibiting Dose 50%; resulting ID50 ) were comparable when measured formation and Int. J.line, Mol. Sci. 2017, 18, doses 1460 3 ofgrowth 11 radiation in 50% effect (Inhibiting Dose 50%;by IDcolony 50) were comparable when inhibition assays. measured by colony formation and growth inhibition assays. cell line, radiation doses resulting in 50% effect (Inhibiting Dose 50%; ID50) were comparable when measured by colony formation and growth inhibition assays. Figure 1. Radiosensitivity of the indicated cell lines evaluated by growth inhibition and colony Figure 1. Radiosensitivity of the indicated cell lines evaluated by growth inhibition and colony formation assays. Growth inhibition and colony forming ability measurements were performed 3 formation assays. Growth inhibition colonycell forming ability measurements were performed 3 days Figureand 1. 10 Radiosensitivity of the and indicated lines growth andforming colony days days post-irradiation, respectively. Bars,evaluated standard by error (SE). inhibition CFA, colony and 10 days post-irradiation, standard (SE). CFA, colonywere forming ability. formation assays. Growth respectively. inhibition andBars, colony formingerror ability measurements performed 3 ability. days and 10 days post-irradiation, respectively. Bars, standard error (SE). CFA, colony forming ability. Interestingly, we have recently reported these assays indicate a comparable Interestingly, we have recently reported thatthat these twotwo assays alsoalso indicate a comparable degree degree of radiosensitivity for solid tumor-derived cell lines that lack p21 or wild-type p53 activity of radiosensitivity for solid tumor-derived cell lines that lack p21 or wild-type p53 activity [23]. weinhave that thesethe two assaysofalso indicate a comparable [23]. Interestingly, Radiosensitivity suchrecently cells wasreported shown to reflect creation multinucleated giant cells, Radiosensitivity in such cells shown to reflect the creation of multinucleated giant cells, degreeremain of radiosensitivity for was solid tumor-derived cellextended lines thatperiods lack p21 or wild-type p53 activity which viable and exhibit metabolic activity for (weeks) post-irradiation. which[23]. remain viable and exhibit metabolic activity for extended periods (weeks) post-irradiation. Radiosensitivity in such cells was shown to reflect the creation of multinucleated giant cells, Although the colony formation assay is considered to be the “gold standard” for genotoxicity which remain viable and exhibit metabolic activity for extended periods (weeks) post-irradiation. Although the colony formation assay is considered to be the “gold standard” for genotoxicity assessment, it has several drawbacks. Aside from being time consuming and labor intensive, Although colony formation assay is considered to be the “gold for macroscopic genotoxicity assessment, it has several drawbacks. Aside from being time consuming and labor intensive, preparation of the good quality single-cell suspensions and evaluation ofstandard” borderline assessment, it has several drawbacks. Aside from being time consuming and labor intensive, preparation good quality suspensions and evaluationexpertise. of borderline macroscopic colonies coloniesof are not trivial forsingle-cell some cell types, requiring considerable In addition, some solid preparation of good quality single-cell suspensions and evaluation of borderline macroscopic tumor-derived cell lines (e.g., SUM52PE breast carcinoma) cannot be reliably evaluated by this assay are not trivial for some cell types, requiring considerable expertise. In addition, some solid colonies of aretheir not poor trivialcloning for some cell types,and requiring considerable In addition, some solid because efficiencies, some cell lines (e.g.,expertise. SKBR3 breast carcinoma) notassay tumor-derived cell lines (e.g., SUM52PE breast carcinoma) cannot be reliably evaluated bydothis tumor-derived cell linessuspension (e.g., SUM52PE breast carcinoma) cannot be reliably evaluated by this assay yield a good single-cell by conventional approaches (e.g., after exposure to trypsin) [22]. because of their poor cloning efficiencies, and some cell lines (e.g., SKBR3 breast carcinoma) do not because their poor cloning efficiencies, and some lines (e.g., breast carcinoma)[23], do not The of growth inhibition assay circumvents these cell limitations. AsSKBR3 pointed out previously in yield yield a good single-cell suspension bybyconventional approaches (e.g.,after after exposure to trypsin) [22]. a good single-cell suspension conventional approaches (e.g., exposure to trypsin) [22]. addition to reproducibility and relative ease of performance, the growth inhibition assay, which is The growth inhibition assay circumvents these limitations. As pointed out previously The growth circumvents limitations. As pointed out previously [23], to in [23], completed withininhibition 5 days ofassay seeding the cells,these enables one to utilize microscopic examination in addition to reproducibility and relative ease of performance, the growth inhibition assay, which is addition reproducibility and relative ease performance, growth which is track the to long-term fate of adherent cells. Toofthis end, cells inthe one set of inhibition dishes canassay, be evaluated, completed 5ofdays of seeding the 3cells, enables one to utilize microscopic examinationfor completed within 5 days of seeding the cells, enables to utilize microscopic tototrack either at thewithin time cell counting (i.e., days afterone irradiation) or after furtherexamination incubation, track the long-term fate of adherent cells. To this end, cells in one set of dishes can be evaluated, the long-term fate of adherent cells. To this end, cells in one set of dishes can be evaluated, either different responses using a battery of single-cell methods. We routinely use one set of dishes for cellat the either the time(i.e., ofbycell counting (i.e., 3 days assay after irradiation) or after incubation, for time viability of cell at counting 3the days after irradiation) or after further incubation, for different responses assessment trypan blue-exclusion under conditions thatfurther minimize the creation different responses using a battery of single-cell methods. We routinely use one set of dishes for cell positives (e.g., cellmethods. detachment exposureuse to trypsin) Basedfor on cell this viability assay, weassessment found usingofa false battery of single-cell Webyroutinely one set [23]. of dishes viability assessment by the trypan blue-exclusion assay under conditions that minimize the of creation that radiation exposure does not induce of viability (trypan blue staining) in cultures these by the trypan blue-exclusion assay underloss conditions that minimize the creation of false positives of false positives (e.g., cell detachment bytimes exposure to trypsin) [23]. Based on this assay, we found cell lines when determined at different between 3 days (Figure 2) and 3 weeks (data not (e.g., that cell radiation detachment by exposure to trypsin) [23]. Based on this assay, we found that radiation exposure does not induce loss of viability (trypan blue staining) in cultures of these shown) post-irradiation. exposure doeswhen not induce loss of blue staining) in cultures lines cell lines determined at viability different (trypan times between 3 days (Figure 2) andof3these weekscell (data notwhen determined at different times between 3 days (Figure 2) and 3 weeks (data not shown) post-irradiation. shown) post-irradiation. Figure 2. Viability of the indicated cell lines before (0 Gy) and 3 days after radiation exposure, evaluated by the trypan blue-exclusion assay. Bars, SE. Figure 2. Viability the indicated cell before lines before Gy)3 and daysradiation after radiation exposure, Figure 2. Viability of theofindicated cell lines (0 Gy)(0and days3after exposure, evaluated by the trypan blue-exclusion by theevaluated trypan blue-exclusion assay. Bars, assay. SE. Bars, SE. Int. J. Mol. Sci. 2017, 18, 1460 Int. J. Mol. Sci. 2017, 18, 1460 4 of 12 4 of 11 2.2. Multiwell Plate Assays Markedly Radiosensitivity 2.2. Multiwell Plate Assays MarkedlyUnderestimate Underestimate Radiosensitivity 2.2.1.2.2.1. Multiwell Plate Colorimetric/Fluorimetric Assays:Description Description Multiwell Plate Colorimetric/Fluorimetric Assays: Short-term cellcell metabolic are widely widelyused usedto toassess assess radiosensitivity Short-term metabolicactivity activity assays assays are radiosensitivity and and chemosensitivity withwith solidsolid tumor-derived cell cell lineslines [24–27]. SuchSuch assays are performed in a multiwell chemosensitivity tumor-derived [24–27]. assays are performed in a multiwell format and abilitycells of living cells toa convert a detection to its format and measure the measure ability oftheliving to convert detection reagent reagent to its metabolite, metabolite, often mediated by the mitochondrial oxidoreductases. The tetrazolium salts often mediated by the mitochondrial oxidoreductases. The tetrazolium salts 3-(4,5-dimethylthiazol3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-tetrazolium bromide (MTT) and 2-yl)-2,5-diphenyl-tetrazolium bromide (MTT) and 2,3-bis-(2-methoxy-4-nitro-5-sulfophenyl)-2H2,3-bis-(2-methoxy-4-nitro-5-sulfophenyl)-2H-tetrazolium-5-carboxanilid (XTT) are the most tetrazolium-5-carboxanilid (XTT) are the most commonly-used detection reagents in multiwell plate commonly-used detection reagents in multiwell plate assays. Figure 3 summarizes the general steps assays. Figure 3 summarizes the general steps for genotoxicity assessment by the XTT colorimetric assay. for genotoxicity assessment by the XTT colorimetric assay. Figure 3. Depiction of anticipated outcome of multiwell plate colorimetric (XTT) assays after Figure 3. Depiction of anticipated outcome of multiwell plate colorimetric (XTT) assays after treatments treatments that result in cytostatic (growth inhibition) effect only (e.g., 5 Gy of ionizing radiation), or that result in cytostatic (growth inhibition) effect only (e.g., 5 Gy of ionizing radiation), or cytostatic cytostatic plus cytotoxic effects (e.g., >40 μM cisplatin). The example is given for a culture with a plus cytotoxic effects (e.g., >40 µM cisplatin). The example is given for a culture with a control control population doubling time of 24 h. In this case, for “control” wells (upper left well), seeding population doubling h.incubating In this case, forwith “control” (upper well), seeding 2000 cells 2000 cells per welltime (dayof 0) 24 and them growthwells medium for 3left days (upper right well) per well (day 0) and incubating them with growth medium for 3 days (upper right well) will result in will result in 16,000 cells/well at the time of optical density measurement. For “radiation” wells 16,000 cells/well at the time of optical density measurement. For “radiation” wells (middle left (middle left well) and “cisplatin” wells (lower left well), the number of cells per well is expected not well) and “cisplatin” wellsday (lower left 3, well), theinduction numberof ofgrowth cells per wellinisvirtually expected increase from to increase from 0 to day due to arrest allnot cellsto(irradiation) or day induction arrestof plus loss ofarrest viability (cisplatin treatment). It is important note that of most 0 to day 3, dueoftogrowth induction growth in virtually all cells (irradiation) or to induction growth cell (cisplatin lines (e.g., treatment). HCT116) have population doubling timessolid than tumor-derived 24 h [22]. arrestsolid plustumor-derived loss of viability It shorter is important to note that most cell lines (e.g., HCT116) have shorter population doubling times than 24 h [22]. In a typical assay, the cells are plated at “optimal” densities in the wells of a microtiter plate, exposed to a genotoxic agent, and incubated for 3 days. XTT (or MTT) is added to each well, and In a typical assay, the are plated at “optimal” in the a microtiter cultures are incubated forcells a few hours to allow the viable densities cells to covert thewells yellowoftetrazolium saltplate, exposed genotoxic agent, formazan and incubated for XTT 3 days. XTTis(or MTT) is added to each (XTTto or aMTT) to its colored derivative; formazan orange in color whereas MTT well, and cultures incubated for a few hours to allowper thewell viable to covert yellow tetrazolium formazanare is purple. The number of cells inoculated andcells the duration of the cell incubation with XTT or need to be optimized for each cell line. XTT formazan is orange in color whereas MTT salt (XTT orMTT MTT) to its colored formazan derivative; is readily up byofthe cells, but its formazan metabolite water insoluble, requiring a with formazanMTT is purple. Thetaken number cells inoculated per well and theisduration of cell incubation solubilization step before data evaluation. XTT, on the other hand, requires an electron coupling step XTT or MTT need to be optimized for each cell line. to facilitate its uptake by theup cells, thecells, XTT metabolite water soluble. MTT is readily taken bybut the but its is formazan metabolite is water insoluble, After these treatments, either with (MTT) or without (XTT) the metabolite solubilization step, requiring a solubilization step before data evaluation. XTT, on the other hand, requires an electron the medium overlaying the control (sham-treated) cultures turns purple (MTT) or orange (XTT), as a coupling step to facilitate its uptake by the cells, but the XTT metabolite is water soluble. result of conversion of the yellow tetrazolium salt to a colored metabolite by viable cells. Genotoxic After these treatments, either with (MTT) or without (XTT) the metabolite solubilization step, the medium overlaying the control (sham-treated) cultures turns purple (MTT) or orange (XTT), as a result of conversion of the yellow tetrazolium salt to a colored metabolite by viable cells. Genotoxic treatment results in a decrease in color intensity of the medium, which is proportional to Int. J. Mol. Sci. 2017, 18, 1460 Int. J. Mol. Sci. 2017, 18, 1460 5 of 12 5 of 11 the number of viable cells/well at the time of incubation with XTT or MTT (Figure 3). The results are treatment results in a decrease in color intensity of the medium, which proportional to the number recorded in a plate reader, using absorbance measurements at 475 nmisfor XTT and 570 nm for MTT. of viable cells/well at the time of incubation with XTT or MTT (Figure 3). The results are recorded The CellTiter-Blue assay is also widely used for genotoxicity assessment. This assay isinbased a plate reader, using absorbance measurements at 475 nm for XTT and 570 nm for MTT. on the ability of living cells to convert the redox dye resazurin (blue) into the resorufin product The CellTiter-Blue assay is also widely used for genotoxicity assessment. This assay is based on (pink). Resazurin has little intrinsic fluorescence until it is converted to its metabolite, which is highly the ability of living cells to convert the redox dye resazurin (blue) into the resorufin product (pink). fluorescent (579 nm excitation/584 nm emission). Thus, the CellTiter-Blue assay not only eliminates Resazurin has little intrinsic fluorescence until it is converted to its metabolite, which is highly the need for electron coupling or metabolite solubilization steps required for tetrazolium-based assays, fluorescent (579 nm excitation/584 nm emission). Thus, the CellTiter-Blue assay not only eliminates but itthe also enables fluorimetric evaluation of thesolubilization data, which steps is considered more sensitive than need for electron coupling or metabolite required to forbe tetrazolium-based absorbance assays, measurements. but it also enables fluorimetric evaluation of the data, which is considered to be more sensitive than absorbance measurements. 2.2.2. Enlarged Cells Created Post-Irradiation Metabolize MTT 2.2.2. Enlarged Cells Created Post-Irradiation Metabolize MTT The properties of MTT make it particularly useful for microscopic assessment of individual cells The properties oftreatment. MTT make it useful forare microscopic of individual cells MTT in the absence of solvent Toparticularly this end, cultures incubatedassessment with medium containing in the absence of solvent treatment. To this end, cultures are incubated with medium containing to allow viable cells to covert MTT to its purple, water-insoluble formazan. Under these conditions, MTT to allow viable cells to covert MTT to its purple, water-insoluble formazan. Under these MTT metabolites appear as intercellular formazan granules as well as needle-like formazan crystals [23]. conditions, MTT metabolites appear as intercellular formazan granules as well as needle-like We used this single-cell observation method to determine the metabolic activity of individual cells formazan crystals [23]. We used this single-cell observation method to determine the metabolic within cultures of the MCF7 A172 cell lines andA172 at two and 6 days) activity of individual cells and within cultures of thebefore MCF7 and celltime linespoints before (3 and at two time after exposure to ionizing (8 Gy). Representative are (8 presented in Figures 4 and 5A,are and the points (3 and 6 radiation days) after exposure to ionizingimages radiation Gy). Representative images results of image analysis are shown in Figure 5B. In these experiments, cells were incubated presented in Figures 4 and 5A, and the results of image analysis are shown in Figure 5B. In these with experiments, cellsMTT werefor incubated with medium MTT for ~1 h and their images were 5A). medium containing ~1 h and their imagescontaining were acquired (Figure 4, upper row; Figure (Figure 4, upper row;and Figure medium removedtoand the cells Next,acquired the medium was removed the 5A). cellsNext, werethe treated withwas methanol dissolve andwere remove treated with methanol to dissolve remove intercellular tetrazolium granules and crystals; their row) intercellular tetrazolium granules andand crystals; their images were acquired before (Figure 4, middle images were acquired before (Figure 4, middle row) and after (Figure 4, lower row) mild staining and after (Figure 4, lower row) mild staining with trypan blue. Two observations should be noted. with trypan blue. Two observations should be noted. First, enlarged cells that emerged in response First, enlarged cells that emerged in response to radiation exposure (i.e., cells undergoing or destined to radiation exposure (i.e., cells undergoing or destined to undergo SIPS) showed a high degree of to undergo SIPS) showed a high degree of metabolic activity (Figure 4, upper row; Figure 5A). Second, metabolic activity (Figure 4, upper row; Figure 5A). Second, the level of metabolic activity per cell the level of metabolic activity per cell signal intensity in the greater “regionfor of irradiated interest”) was (estimated from signal intensity in (estimated the “regionfrom of interest”) was markedly markedly greater for irradiated cultures than for sham-irradiated controls (Figure 5B). cultures than for sham-irradiated controls (Figure 5B). Figure 4. Representative bright-field microscopy images depicting the metabolic activity of MCF7 Figure 4. Representative bright-field microscopy images depicting the metabolic activity of MCF7 cultures before (control) and at indicated times after 8-Gy irradiation. Metabolic activity was cultures before (control) and at indicated times after 8-Gy irradiation. Metabolic activity was measured measured by the ability of the cells to convert the yellow MTT to its purple formazan metabolite, by the ability of the cells to convert the yellow MTT to its purple formazan metabolite, appearing appearing as dark granules and crystals. Upper row: images were acquired after incubation of cells as dark granules and crystals. Upper row: images were acquired after incubation of cells with MTT with MTT for ~1 h. Middle row: following incubation with MTT, cells were fixed in methanol for 0.5 for ~1min h. to Middle row: incubation with MTT, cells were was fixed in methanol 0.5 min to dissolve the following MTT metabolite. The resulting purple medium removed before for acquiring dissolve the of MTT resulting purple medium before acquiring images of images cells.metabolite. Lower row:The MTT treated and methanol fixedwas cellsremoved were mildly stained with trypan cells. blue Lower MTT treated and methanol cells were mildlyatstained with trypan blueThe (TB) to (TB)row: to visualize their morphology. Allfixed images were acquired the same magnification. border of some cells is marked for clarity. visualize their morphology. All images were acquired at the same magnification. The border of some cells is marked for clarity. Int. J. Mol. Sci. 2017, 18, 1460 Int. J. Mol. Sci. 2017, 18, 1460 6 of 12 6 of 11 Figure 5. (A) Representative images of A172 cells used for image analysis. The images of MTT Figure 5. (A) Representative images of A172 cells used for image analysis. The images of MTT metabolites were acquired as described in Figure 4 legend (upper row). The images were then metabolites were acquired as described in Figure 4 legend (upper row). The images were then converted converted to grayscale and inverted. Blue and red ovals mark some regions of interest (reflecting to grayscale inverted. Blue and red ovals mark some regions of interest (reflecting MTT metabolites) MTT and metabolites) and corresponding background regions used for image analysis, respectively. (B) and corresponding background regions usedactivity for image (B) as Densitometric Densitometric evaluation of MTT metabolic for theanalysis, indicated respectively. cultures, expressed signal evaluation of MTT activity for the indicated cultures, expressed as signal intensity intensity for metabolic regions of interest (cells) after corresponding background corrections. Mean valuesfor for regions at least 30 cells arecorresponding presented for each sample. Bars,corrections. SE. ROI, regionMean of interest; BG,for background. of interest (cells) after background values at least 30 cells are presented for each sample. Bars, SE. ROI, region of interest; BG, background. 2.2.3. Multiwell Plate Assays Lack Specificity Several pitfalls of Lack multiwell plate colorimetric assays have been extensively reviewed, 2.2.3. Multiwell Plate Assays Specificity including the impact of cell density and possible interference of test compounds with optical density measurements However, a fundamentalassays caveathave related to extensively cell fate hasreviewed, been largely Several pitfalls of[28–33]. multiwell plate colorimetric been including overlooked. the MTT/XTT for example, the change in optical density for control wellsdensity the impact of cellIn density and assays, possible interference of test compounds with optical (purple or orange)However, versus treated wells is often assumed to reflect loss of has viability to measurements [28–33]. a fundamental caveat related to cell fate beenconsequent largely overlooked. genotoxic treatment. This interpretation would be tenable only if the number of cells at the time of In the MTT/XTT assays, for example, the change in optical density for control wells (purple or orange) assay evaluation (e.g., 3 days following genotoxic treatment) would be identical in control and versus treated wellshowever, is oftenthis assumed to the reflect loss of genotoxic viability stress consequent genotoxic treatment. treated wells; is often not case because activates to transient cell cycle This interpretation tenableproliferation only if theblock number of cells theSIPS time of assay evaluation checkpoints aswould well as abesustained associated with,at e.g., and/or creation of polyploid/multinucleated giant cells, which are characterized maintenance cell membrane (e.g., 3 days following genotoxic treatment) would be identical by in control and of treated wells; however, integrity to secretegenotoxic growth-promoting factors (reviewed in cell [2–4]). Suchcheckpoints growth-arrested this is often notand the ability case because stress activates transient cycle as well as cancer cells exhibit metabolic activity, including the ability to convert MTT to its purple formazan a sustained proliferation block associated with, e.g., SIPS and/or creation of polyploid/multinucleated metabolite ([23]; Figures 4 and 5A, and unpublished observations). giant cells, which are characterized by maintenance of cell membrane integrity and ability to secrete Thus, although many suppliers refer to these colorimetric assays in terms of “Cell Viability” or growth-promoting in [2–4]). Such cancer cells exhibit metabolic “Cytotoxicity,”factors all such(reviewed assays that are performed in a growth-arrested multiwell plate format lack specificity and can activity,lead including the ability to convert to itsinpurple ([23]; Figures 4 and 5A, to incorrect interpretations. As MTT illustrated Figure formazan 3, multiwellmetabolite plate colorimetric assays are expected to observations). indicate comparable levels of genotoxicity for treatments that cause growth inhibition in and unpublished the although absence of many cell killing (e.g., after moderate doses of ionizing radiation) for Thus, suppliers referexposure to thesetocolorimetric assays in terms of “Celland Viability” or treatments that induce loss of viability (e.g., after treatment with high concentrations of cisplatin). “Cytotoxicity,” all such assays that are performed in a multiwell plate format lack specificity and can lead to 2.2.4. incorrect interpretations. Asbyillustrated in Figure multiwell plate assays are Radiosensitivity Measured Multiwell Plate Assays 3, in p53 Wild-Type Cellcolorimetric Lines expected to indicate comparable levels of genotoxicity for treatments that cause growth inhibition Assuming that radiation exposure would minimally alter the size of cancer cells, in the absence of cellaskilling (e.g., exposure to moderate oftoionizing radiation) radiosensitivity measured by after multiwell plate assays would be doses expected be comparable to thatand for treatments that induce lossinhibition of viability treatment of cisplatin). measured by growth and (e.g., colonyafter formation assays.with This high is notconcentrations always the case, however; cancer cells undergoing SIPS following radiation exposure exhibit a markedly enlarged 2.2.4. Radiosensitivity Measured by example, Multiwell Plate that Assays in p53 Celllocalization Lines morphology. Sohn et al. [34], for reported HCT116 cellsWild-Type exhibit nuclear of p21 and a dramatic increase in size at 48 h after irradiation. We made a similar observation with our Assuming that radiation exposure would minimally alter the size of cancer cells, radiosensitivity panel of cell lines (data not shown). Accordingly, colorimetric assays are likely to underestimate as measured by multiwell plate assays would bethat expected to be comparable to that measured by radiosensitivity in p53 wild-type cell lines, given highly enlarged cells created post-irradiation growth remain inhibition colony assays. This is not always the case, cancer cells viableand (e.g., Figureformation 2), and exhibit metabolic activity (e.g., Figures 4 andhowever; 5). The results presented Figure 6 are consistent with thisexhibit notion.aInmarkedly MCF7 cultures, for example, the ID50Sohn values undergoing SIPS in following radiation exposure enlarged morphology. et al. [34], measured by growth inhibition and multiwell plate assays (both measured 3 days post-irradiation) for example, reported that HCT116 cells exhibit nuclear localization of p21 and a dramatic increase in amounted to ~3 Gy and >8 Gy, respectively. size at 48 h after irradiation. We made a similar observation with our panel of cell lines (data not shown). Accordingly, colorimetric assays are likely to underestimate radiosensitivity in p53 wild-type cell lines, given that highly enlarged cells created post-irradiation remain viable (e.g., Figure 2), and exhibit metabolic activity (e.g., Figures 4 and 5). The results presented in Figure 6 are consistent with this notion. In MCF7 cultures, for example, the ID50 values measured by growth inhibition and multiwell plate assays (both measured 3 days post-irradiation) amounted to ~3 Gy and >8 Gy, respectively. Int. J. Mol. Sci. 2017, 18, 1460 7 of 12 Int. J. Mol. Sci. 2017, 18, 1460 7 of 11 Int. J. Mol. Sci. 2017, 18, 1460 7 of 11 6. Radiosensitivity of indicated the indicated evaluated by the 96-well plate XTT (solid FigureFigure 6. Radiosensitivity of the cell cell lineslines evaluated by the 96-well plate XTT (solid squares) squares) and CellTiter-Blue (openassays. squares)Bars, assays. ID50 values for colorimetric (this and CellTiter-Blue (open squares) SE.Bars, TheSE. IDThe values for colorimetric (this Figure), 50 Figure),6.growth inhibition and colony formation (Figure 1) assaysbyarethe shown. CTB, CellTiter-Blue; Figure Radiosensitivity of the indicated cell lines evaluated 96-well plate XTT (solid growth inhibition and colony formation (Figure 1) assays are shown. CTB, CellTiter-Blue; CFA, 50%. CFA, colony ability;(open ID50, inhibiting squares) and forming CellTiter-Blue squares) dose assays. Bars, SE. The ID50 values for colorimetric (this colony forming ability; ID50 , inhibiting dose 50%. Figure), growth inhibition and colony formation (Figure 1) assays are shown. CTB, CellTiter-Blue; 2.3. Cancer Cells Expressing Wild-Type p53 Do Not doseReadily 50%. Undergo Apoptosis within 3 Days CFA, colony forming ability; ID50, inhibiting 2.3. Cancer Cells Expressing Wild-Type p53 Do Not Readily Undergo Apoptosis within 3 Days Post-Irradiation Post-Irradiation 2.3. Cancer Cells Expressing Wild-Type p53 Do Not Readily Undergo Apoptosis within 3 Days In most human types, activation of of p53 p53 signaling to genotoxic stressstress has been In most human cellcell types, activation signalingininresponse response to genotoxic has been Post-Irradiation shown to supress (rather than promote) apoptosis [2,19]. Suppression of apoptosis by p53 signaling shown to supress (rather than promote) apoptosis [2,19]. Suppression of apoptosis by p53 signaling In most human not cell only types, activation ofacts p53 at signaling inlevels response to death genotoxic stressbut has been has been attributed p21, which of the cascade, has been attributed not only to to p21, which acts at different different levels of the death cascade,also buttoalso to shown to supress (rather than promote) apoptosis [2,19].proteins Suppression of apoptosis p53(wild-type signaling p53-dependent expression of numerous anti-apoptotic including 14-3-3δ, by WIP1 p53-dependent expression of numerous anti-apoptotic proteins including 14-3-3δ, WIP1 (wild-type has been attributed not only p21, which(DNAJ acts at homolog different subfamily levels of the death cascade, also to p53-induced phosphatase 1), to and DNAJB9 B member 9) [19]. but Consistent p53-induced phosphatase 1), and DNAJB9 (DNAJ homolog subfamily B member [19].(wild-type Consistent p53-dependent expression of numerous anti-apoptotic proteins 14-3-3δ, WIP1 with these observations, p53 wild-type cancer cell lines such asincluding HCT116 [34,35],9)MCF7 [6,35] and with these p53-induced observations, p53 wild-type cancer cell lines such as HCT116 [34,35], MCF7 [6,35] and A172 [36] 1), and DNAJB9 (DNAJapoptosis homologin subfamily [19]. Consistent A172 [36] arephosphatase markedly refractory to undergoing responseBtomember ionizing9)radiation. are markedly refractory to undergoing apoptosis in lines response to radiation. with Apoptosis these observations, p53 wild-type cancer cell such as ionizing HCT116 [34,35], MCF7of[6,35] and in our previous work was evaluated by microscopic examination Hoechst A172 [36] areinmarkedly refractorywork to undergoing apoptosis in response tofragmentation). ionizing radiation. 33342-stained cells morphological criteria condensation and We sought Apoptosis ourforprevious was (nuclear evaluated by microscopic examination of Hoechst Apoptosis in morphological our previous by work was(nuclear evaluated by microscopic examination Hoechst to verify these observations flow cytometric determination of Annexin ofV-positive 33342-stained cells for criteria condensation and fragmentation). We sought to 33342-stained cells for morphological criteria (nuclear condensation and fragmentation). We sought (phosphatidylserine-externalized) cells. The results are presented in Figure 7. In these experiments, verify these observations by flow cytometric determination of Annexin V-positive (phosphatidylserineto verifyof the these by used flowin the cytometric determination of Annexin cultures fourobservations cancer cell lines radiosensitivity studies were exposed toV-positive radiation externalized) cells. The results are presented in Figure 7. In these experiments, cultures of the four (phosphatidylserine-externalized) cells. The results are presented in Figure 7. In thesecombined experiments, and incubated for 3 days. The corresponding floating and adherent cells were and cancercultures cell lines used the radiosensitivity studies were exposed to in radiation incubated for of by the fourin cancer cell As linesexpected, used in the radiosensitivity exposedand to radiation evaluated flow cytometry. radiation exposure studies resultedwere apoptosis (Annexin V 3 days. The corresponding floating and adherent cells were combined and evaluated by flow cytometry. and incubated 3 days. The of corresponding floating and adherent cells were combined and staining) in onlyfor a small fraction these p53 wild-type cells. As expected, radiation in apoptosis V staining) in only a(Annexin small fraction of evaluated by flow exposure cytometry.resulted As expected, radiation(Annexin exposure resulted in apoptosis V in only cells. a small fraction of these p53 wild-type cells. these staining) p53 wild-type Figure 7. (A) Representative flow cytometry profiles of SKNSH cells stained with Annexin V (FITC) before and 3 days after irradiation. (B) The percentages of Annexin V-positive cells in the indicated cell before and 3 daysflow after irradiation. SE.ofofSKNSH Figure (A) Representative flowcytometry cytometry Bars, profiles cells stained withwith Annexin V (FITC) Figure 7. lines (A)7.Representative profiles SKNSH cells stained Annexin V (FITC) before and 3 days after irradiation. (B) The percentages of Annexin V-positive cells in the indicated before and 3 days after irradiation. (B) The percentages of Annexin V-positive cells in the indicated cell cell lines before and 3 days after irradiation. Bars, SE. lines before and 3 days after irradiation. Bars, SE. Int. J. Mol. Sci. 2017, 18, 1460 Int. J. Mol. Sci. 2017, 18, 1460 8 of 12 8 of 11 As aAs positive control, we also determined the apoptotic response of selected cancer cell lines a positive control, we also determined the apoptotic response of selected cancer cell lines (e.g., (e.g., HCT116) following incubation with with high high concentrations of theofchemotherapeutic drugdrug cisplatin HCT116) following incubation concentrations the chemotherapeutic or thecisplatin nuclear or export leptomcyin B. Treatment cisplatin (60 µM) or leptomycin (2 µM) the inhibitor nuclear export inhibitor leptomcyinwith B. Treatment with cisplatin (60 μM)B or for 3 leptomycin days resulted apoptosis in resulted a high proportion cells when evaluated bywhen Annexin B (2in μM) for 3 days in apoptosisof inHCT116 a high proportion of HCT116 cells evaluated by Annexin (Figurecriteria 8) and morphological criteria (data not shown). V/flow cytometry (FigureV/flow 8) andcytometry morphological (data not shown). Figure 8. (A) Representative flow cytometry profiles of HCT116 cells assessed for Annexin V Figure 8. (A) Representative flow cytometry profiles of HCT116 cells assessed for Annexin V positivity positivity after incubation in the absence (control) or presence of leptomycin B (2 μM) for 3 days. (B) after incubation in the absence (control) or presence of leptomycin B (2 µM) for 3 days. (B) The The percentages of Annexin V-positive cells in HCT116 cultures incubated in the absence or presence percentages of Annexin V-positive cells in HCT116 cultures incubated in the absence or presence of of leptomycin B (2 μM) or cisplatin (60 μM) for 3 days. Bars, SE. leptomycin B (2 µM) or cisplatin (60 µM) for 3 days. Bars, SE. 3. Materials and Methods 3. Materials and Methods 3.1. Cells and Culture Conditions 3.1. Cells and Culture Conditions The four cancer cell lines used in the present study were purchased from the American Type Culture (Rockville, MD, in USA). werestudy cultured as monolayers DMEM/F12 nutrientType The fourCollection cancer cell lines used the Cells present were purchased in from the American medium supplemented with 5% USA). (v/v) fetal bovine as described in [7]. All were free Culture Collection (Rockville, MD, Cells wereserum cultured as monolayers in cultures DMEM/F12 nutrient of Mycoplasma contamination. medium supplemented with 5% (v/v) fetal bovine serum as described in [7]. All cultures were free of Mycoplasma contamination. 3.2. Reagents The vital dye trypan blue (Sigma, St. Louis, MO, USA), the CellTiter-Blue reagent (Promega, 3.2. Reagents Madison, WI, USA) and the tetrazolium dyes MTT and XTT (Roche Diagnostics, Penzberg, The vital dye trypan blue (Sigma, St. Louis, MO, USA), the CellTiter-Blue reagent (Promega, Germany) were used as recommended by the manufacturers. Madison, WI, USA) and the tetrazolium dyes MTT and XTT (Roche Diagnostics, Penzberg, Germany) were 3.3. used as recommended by the manufacturers. Radiation Exposure Exposure to Co γ-rays was performed in a Gammacell 220 unit as described [37]. 3.3. Radiation Exposure 60 3.4. Radiosensitivity Assays was performed in a Gammacell 220 unit as described [37]. Exposure to 60 Co γ-rays Radiosensitivity evaluation by growth inhibition, colony formation and 96-well plate assays 3.4. Radiosensitivity Assays was performed as described [23]. Flow cytometric assessment of Annexin V-positive cells was performed as described [38]. by growth inhibition, colony formation and 96-well plate assays was Radiosensitivity evaluation performed as described [23]. Flow cytometric assessment of Annexin V-positive cells was performed 4. Conclusions as described [38]. In the current study, we have demonstrated that the conventional growth inhibition assay 4. Conclusions generates radiosensitivity data comparable to that obtained by the slower and more technically challenging colony formation assay for p53 wild-type cancer cell lines. On the other hand, the In the current study, we have demonstrated that the conventional growth inhibition assay response measured by multiwell plate colorimetric/fluorimetric assays is markedly skewed towards generates radiosensitivity data comparable to that obtained by the slowergrowth-arrested and more technically radioresistance, which we assume to reflect the emergence of highly enlarged, and challenging colony formation assay for p53 wild-type cancer cell lines. On the other viable cells post-irradiation (i.e., cells undergoing SIPS). In addition, we have confirmed thathand, the response multiwell plate colorimetric/fluorimetric assaysradiation is markedly skewed exposure measured to moderateby(“clonogenic survival-curve-range”) doses of ionizing does not induce apoptosis (as which judgedwe by assume the Annexin V/flow approach) orenlarged, loss of viability in the towards radioresistance, to reflect thecytometry emergence of highly growth-arrested and viable cells post-irradiation (i.e., cells undergoing SIPS). In addition, we have confirmed that exposure to moderate (“clonogenic survival-curve-range”) doses of ionizing radiation does not induce apoptosis (as judged by the Annexin V/flow cytometry approach) or loss of viability in the p53 Int. J. Mol. Sci. 2017, 18, 1460 9 of 12 wild-type cancer cell lines that we examined. These observations, in concert with those recently reported by us for p53 null or mutant p53-expressing cancer cell lines [23], give credence to the caution advised by the Nomenclature Committee on Cell Death [39] and others [40] with regard to the potential for misinterpreting the outcome of cell-based genotoxicity data in terms of loss of viability and hence cell death. Short-term multiwell plate assays are indispensable for high throughput studies, e.g., screening compound libraries for genotoxicity (proliferation block and/or cell death) towards the US NCI panel of cancer cell lines. However, it is becoming increasingly evident that the effect measured by such assays primarily reflects growth inhibition and not loss of viability [3,19,23]. Our current studies with p53 wild-type cancer cell lines exposed to moderate doses of ionizing radiation provide further support for this conclusion. Acknowledgments: The authors wish to thank April Scott and Ying W. Wang for technical support. This work was supported by the Canadian Breast Cancer Foundation—Prairies/North West Territories region, Alberta Innovates-Health Solutions (grant 101201164) and the Alberta Cancer Foundation—Transformative Program (file 26603). Author Contributions: Razmik Mirzayans conceived and designed the experiments, interpreted data and wrote the manuscript. Bonnie Andrais performed most of the experiments. David Murray interpreted data and edited the manuscript. All authors read and approved the final manuscript. Conflicts of Interest: The authors declare no conflict of interest. Abbreviations SIPS CFA DNAJB9 WIP1 CDK MTT XTT CTB ID50 SE TB ROI BG Stress-induced premature senescence Colony forming ability DNAJ homolog subfamily B member 9 Wild-type p53-induced phosphatase 1 Cyclin dependent kinase 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-tetrazolium bromide 2,3-bis-(2-methoxy-4-nitro-5-sulfophenyl)-2H-tetrazolium-5-carboxanilid CellTiter-Blue Inhibiting dose, 50% Standard error Trypan blue Region of interest Background References 1. 2. 3. 4. 5. 6. Enoch, T.; Norbury, C. Cellular responses to DNA damage: Cell-cycle checkpoints, apoptosis and the roles of p53 and ATM. Trends Biochem. Sci. 1995, 20, 426–430. [CrossRef] Mirzayans, R.; Andrais, B.; Scott, A.; Wang, Y.W.; Murray, D. Ionizing radiation-induced responses in human cells with differing TP53 status. Int. J. Mol. Sci. 2013, 14, 22409–22435. [CrossRef] [PubMed] Mirzayans, R.; Andrais, B.; Kumar, P.; Murray, D. The growing complexity of cancer cell response to DNA-damaging agents: Caspase 3 mediates cell death or survival? Int. J. Mol. Sci. 2016, 17, 708. [CrossRef] [PubMed] Murray, D.; Mirzayans, R. Role of therapy-induced cellular senescence in tumor cells and its modification in radiotherapy; the good, the bad and the ugly. J. Nucl. Med. Radiat. Ther. 2013, S6, 018. Chang, B.D.; Broude, E.V.; Dokmanovic, M.; Zhu, H.; Ruth, A.; Xuan, Y.; Kandel, E.S.; Lausch, E.; Christov, K.; Roninson, I.B. A senescence-like phenotype distinguishes tumor cells that undergo terminal proliferation arrest after exposure to anticancer agents. Cancer Res. 1999, 59, 3761–3767. [PubMed] Jones, K.R.; Elmore, L.W.; Jackson-Cook, C.; Demasters, G.; Povirk, L.F.; Holt, S.E.; Gewirtz, D.A. p53-Dependent accelerated senescence induced by ionizing radiation in breast tumour cells. Int. J. Radiat. Biol. 2005, 81, 445–458. [CrossRef] [PubMed] Int. J. Mol. Sci. 2017, 18, 1460 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. 20. 21. 22. 23. 24. 25. 26. 10 of 12 Mirzayans, R.; Scott, A.; Cameron, M.; Murray, D. Induction of accelerated senescence following exposure to ionizing radiation in human solid tumor-derived cell lines expressing wild-type TP53. Radiat. Res. 2005, 163, 53–62. [CrossRef] [PubMed] Wang, M.; Morsbach, F.; Sander, D.; Gheorghiu, L.; Nanda, A.; Benes, C.; Kriegs, M.; Krause, M.; Dikomey, E.; Baumann, M.; et al. EGF receptor inhibition radiosensitizes NSCLC cells by inducing senescence in cells sustaining DNA double-strand breaks. Cancer Res. 2011, 71, 6261–6269. [CrossRef] [PubMed] Purvis, J.E.; Karhohs, K.W.; Mock, C.; Batchelor, E.; Loewer, A.; Lahav, G. p53 dynamics control cell fate. Science 2012, 336, 1440–1444. [CrossRef] [PubMed] Coppé, J.P.; Desprez, P.Y.; Krtolica, A.; Campisi, J. The senescence-associated secretory phenotype: The dark side of tumor suppression. Annu. Rev. Pathol. 2010, 5, 99–118. [CrossRef] [PubMed] Davalos, A.R.; Coppé, J.P.; Campisi, J.; Desprez, P.Y. Senescent cells as a source of inflammatory factors for tumor progression. Cancer Metastasis Rev. 2010, 29, 273–283. [CrossRef] [PubMed] Leikam, C.; Hufnagel, A.L.; Otto, C.; Murphy, D.J.; Mühling, B.; Kneitz, S.; Nanda, I.; Schmid, M.; Wagner, T.U.; Haferkamp, S.; et al. In vitro evidence for senescent multinucleated melanocytes as a source for tumor-initiating cells. Cell Death Dis. 2015, 6, e1711. [CrossRef] [PubMed] Wang, Q.; Wu, P.C.; Dong, D.Z.; Ivanova, I.; Chu, E.; Zeliadt, S.; Vesselle, H.; Wu, D.Y. Polyploidy road to therapy-induced cellular senescence and escape. Int. J. Cancer 2013, 132, 1505–1515. [CrossRef] [PubMed] Gewirtz, D.A. Autophagy, senescence and tumor dormancy in cancer therapy. Autophagy 2009, 5, 1232–1234. [CrossRef] [PubMed] Kaur, E.; Rajendra, J.; Jadhav, S.; Shridhar, E.; Goda, J.S.; Moiyadi, A.; Dutt, S. Radiation-induced homotypic cell fusions of innately resistant glioblastoma cells mediate their sustained survival and recurrence. Carcinogenesis 2015, 36, 685–695. [CrossRef] [PubMed] Bunz, F.; Dutriaux, A.; Lengauer, C.; Waldman, T.; Zhou, S.; Brown, J.P.; Sedivy, J.M.; Kinzler, K.W.; Vogelstein, B. Requirement for p53 and p21 to sustain G2 arrest after DNA damage. Science 1998, 282, 1497–1501. [CrossRef] [PubMed] Broude, E.V.; Swift, M.E.; Vivo, C.; Chang, B.D.; Davis, B.M.; Kalurupalle, S.; Blagosklonny, M.V.; Roninson, I.B. p21Waf1/Cip1/Sdi1 mediates retinoblastoma protein degradation. Oncogene 2007, 26, 6954–6958. [CrossRef] [PubMed] Crescenzi, E.; Palumbo, G.; de Boer, J.; Brady, H.J. Ataxia telangiectasia mutated and p21CIP1 modulate cell survival of drug-induced senescent tumor cells: Implications for chemotherapy. Clin. Cancer Res. 2008, 14, 1877–1887. [CrossRef] [PubMed] Mirzayans, R.; Andrais, B.; Kumar, P.; Murray, D. Significance of wild-type p53 signaling in suppressing apoptosis in response to chemical genotoxic agents: Impact on chemotherapy outcome. Int. J. Mol. Sci. 2017, 18, 928. [CrossRef] [PubMed] Mirzayans, R.; Andrais, B.; Scott, A.; Paterson, M.C.; Murray, D. Single-cell analysis of p16INK4a and p21WAF1 expression suggests distinct mechanisms of senescence in normal human and Li-Fraumeni Syndrome fibroblasts. J. Cell. Physiol. 2010, 223, 57–67. [PubMed] Puck, T.T.; Marcus, P.I. Action of X-rays on mammalian cells. J. Exp. Med. 1956, 103, 653–666. [CrossRef] [PubMed] Mirzayans, R.; Andrais, B.; Scott, A.; Tessier, A.; Murray, D. A sensitive assay for the evaluation of cytotoxicity and its pharmacologic modulation in human solid tumor-derived cell lines exposed to cancer-therapeutic agents. J. Pharm. Pharm. Sci. 2007, 10, 298–311. Mirzayans, R.; Andrais, B.; Scott, A.; Wang, Y.W.; Kumar, P.; Murray, D. Multinucleated giant cancer cells produced in response to ionizing radiation retain viability and replicate their genome. Int. J. Mol. Sci. 2017, 18, 360. [CrossRef] [PubMed] Banasiak, D.; Barnetson, A.R.; Odell, R.A.; Mameghan, H.; Russell, P.J. Comparison between the clonogenic, MTT, and SRB assays for determining radiosensitivity in a panel of human bladder cancer cell lines and a ureteral cell line. Radiat. Oncol. Investig. 1999, 7, 77–85. [CrossRef] Berridge, M.V.; Tan, A.S.; McCoy, K.D.; Wang, R. The biochemical and cellular basis of cell proliferation assays that use tetrazolium salts. Biochemica 1996, 4, 14–19. Vega-Avila, E.; Pugsley, M.K. An overview of colorimetric assay methods used to assess survival or proliferation of mammalian cells. Proc. West. Pharmacol. Soc. 2011, 54, 10–14. [PubMed] Int. J. Mol. Sci. 2017, 18, 1460 27. 28. 29. 30. 31. 32. 33. 34. 35. 36. 37. 38. 39. 40. 11 of 12 Adan, A.; Kiraz, Y.; Baran, Y. Cell proliferation and cytotoxicity assays. Curr. Pharm. Biotechnol. 2016, 17, 1213–1221. [CrossRef] [PubMed] Scudiero, D.A.; Shoemaker, R.H.; Paull, K.D.; Monks, A.; Tierney, S.; Nofziger, T.H.; Currens, M.J.; Seniff, D.; Boyd, M.R. Evaluation of a soluble tetrazolium/formazan assay for cell growth and drug sensitivity in culture using human and other tumor cell lines. Cancer Res. 1988, 48, 4827–4833. [PubMed] Wang, P.; Henning, S.M.; Heber, D. Limitations of MTT and MTS-based assays for measurement of antiproliferative activity of green tea polyphenols. PLoS ONE 2010, 5, e10202. [CrossRef] [PubMed] Fischer, J.; Prosenc, M.H.; Wolff, M.; Hort, N.; Willumeit, R.; Feyerabend, F. Interference of magnesium corrosion with tetrazolium-based cytotoxicity assays. Acta Biomater. 2010, 6, 1813–1823. [CrossRef] [PubMed] Stepanenko, A.A.; Dmitrenko, V.V. Pitfalls of the MTT assay: Direct and off-target effects of inhibitors can result in over/underestimation of cell viability. Gene 2015, 574, 193–203. [CrossRef] [PubMed] Méry, B.; Guy, J.B.; Vallard, A.; Espenel, S.; Ardail, D.; Rodriguez-Lafrasse, C.; Rancoule, C.; Magné, N. In vitro cell death determination for drug discovery: A landscape review of real issues. J. Cell Death 2017, 10, 1179670717691251. [PubMed] Van Tonder, A.; Joubert, A.M.; Cromarty, A.D. Limitations of the 3-(4,5-dimethylthiazol-2-yl)-2,5diphenyl-2H-tetrazolium bromide (MTT) assay when compared to three commonly used cell enumeration assays. BMC Res. Notes 2015, 8, 47. [CrossRef] [PubMed] Sohn, D.; Essmann, F.; Schulze-Osthoff, K.; Jänicke, R.U. p21 blocks irradiation-induced apoptosis downstream of mitochondria by inhibition of cyclin-dependent kinase-mediated caspase-9 activation. Cancer Res. 2006, 66, 11254–11262. [CrossRef] [PubMed] Mirzayans, R.; Murray, D. Cellular Senescence: Implications for Cancer Therapy; Monograph; Garvey, R.B., Ed.; Nova Science Publishers, Inc.: Hauppauge, NY, USA, 2009; pp. 1–130. Anderson, D.L.; Mirzayans, R.; Andrais, B.; Siegbahn, E.A.; Fallone, B.G.; Warkentin, B. Spatial and temporal distribution of γH2AX fluorescence in human cell cultures following synchrotron-generated X-ray microbeams: Lack of correlation between persistent γH2AX foci and apoptosis. J. Synchrotron Radiat. 2014, 21, 801–810. [CrossRef] [PubMed] Mirzayans, R.; Andrais, B.; Paterson, M.C. Synergistic effect of aphidicolin and 1-β-D-arabinofuranosylcytosine on the repair of γ-ray-induced DNA damage in normal human fibroblasts. Int. J. Radiat. Biol. 1992, 62, 417–425. [CrossRef] [PubMed] Mirzayans, R.; Scott, A.; Andrais, B.; Pollock, S.; Murray, D. Ultraviolet light exposure triggers nuclear accumulation of p21WAF1 and accelerated senescence in human normal and nucleotide excision repair-deficient fibroblast strains. J. Cell. Physiol. 2008, 215, 55–67. [CrossRef] [PubMed] Kroemer, G.; Galluzzi, L.; Vandenabeele, P.; Abrams, J.; Alnemri, E.S.; Baehrecke, E.H.; Blagosklonny, M.V.; El-Deiry, W.S.; Golstein, P.; Green, D.R.; et al. Classification of cell death: Recommendations of the Nomenclature Committee on Cell Death 2009. Cell Death Differ. 2009, 16, 3–11. [CrossRef] [PubMed] Husmann, M. Vital dyes and virtual deaths. Cell Death Differ. 2013, 20, 963. [CrossRef] [PubMed] © 2017 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
© Copyright 2026 Paperzz