PopMedNet Queries
A Data Partner Perspective
Kevin Haynes, PharmD, MSCE, FISPE
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Outline
From the point of receiving a query request email
To working with the DataMart Query Tool
To Windows-Linux file conversation
Update the “User Inputs”
Run the program
And return results to requester
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From the point of receiving a query request email
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Access the DataMart Query tool in PopMedNet
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Review Request
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Download zipped package
we create a new subfolder with the same name as the
request, then we save the downloaded zip package to this
new subfolder, and unzip to extract.
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WinSCP to move files from windows to Linux
Windows server
Linux server
Used to move files between Windows server and Linux
server
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Open SAS Enterprise Guide on SASEG server
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SAS Enterprise Guide in Linux
%let mpname=to07_add_preg_ahr_wp007_nsdp_v01;
libname Src_Data "/SAS_Data/GAR_Data/ModularPrograms/&mpname./inputfiles0";
libname Tgt_Data "/SAS_Data/GAR_Data/ModularPrograms/&mpname./inputfiles";
proc migrate in=Src_Data out=Tgt_Data;
run;
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1) Edit DPID and Site ID according to the table below
Update SAS code “User Inputs”
%LET DPID=HC;
%LET SITEID=OS;
2) Edit this section to reflect your name for each Table/File (or View)
%let ENRTABLE=Enrollment;
%let DEMTABLE=Demographic;
%let DISTABLE=Dispensing;
%let DIATABLE=Diagnosis;
%let PROCTABLE=Procedure;
%let ENCTABLE=Encounter;
3) Edit this section to reflect locations for the libraries/folders for Mini-Sentinel Data and Output folders
/********** FOLDER CONTAINING INPUT DATA FILES AND MSCDM DATA ***************************************/
/* IMPORTANT NOTE: end of path separators are needed;
*/
/* Windows-based platforms: "\", e.g. "C:\user\sas\" and not "C:\user\sas";
*/
/* Unix-based platforms:
"/", e.g."/home/user/sas/" and not "/home/user/sas";
*/
/*
*/
/********** FOLDER CONTAINING INPUT DATA FILES AND MSCDM DATA ***************************************/;
/*Data in MSCDM Format*/
libname indata '/SAS_Work/GAR_WS1/ETL11/';
/*NDC/ICD9 Codes File Location*/ %let infolder=/SAS_Data/GAR_Data/ModularPrograms/to07_add_preg_ahr_wp007_nsdp_v01/inputfiles/;
/*SAS Input Files*/
libname infolder "&infolder.";
/********** FOLDER CONTAINING SUMMARY FILES TO BE EXPORTED TO Mini Sentinel Operations Center (MSOC)*/;
/*CSV Output Files*/
%let MSOC=/SAS_Data/GAR_Data/ModularPrograms/to07_add_preg_ahr_wp007_nsdp_v01/msoc/;
/*SAS Output Files*/
libname MSOC "&MSOC.";
/****** FOLDER CONTAINING FINAL DATASETS TO BE KEPT LOCAL AT THE PARTNER SITE (DPLocal)**********/;
/*CSV Output Files*/
%let DPLocal=/SAS_Data/GAR_Data/ModularPrograms/to07_add_preg_ahr_wp007_nsdp_v01/dplocal/;
/*SAS Output Files*/
libname DPLocal "&DPLocal.";
/****************************************************************************************/
/************************ PLEASE DO NOT EDIT CODE BELOW THIS LINE *************************/
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Run program
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WinSCP the MSOC folder to local windows
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Prepare summary tables for QC
Another team member QCs the results
Zip folder and rename according to workplan requirements
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Return results to Requester
Contact requester when submission is complete
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