Session A1 Paper 234 Disclaimer—This paper partially fulfills a writing requirement for first year (freshman) engineering students at the University of Pittsburgh Swanson School of Engineering. This paper is a student, not a professional, paper. This paper is based on publicly available information and may not provide complete analyses of all relevant data. If this paper is used for any purpose other than these authors’ partial fulfillment of a writing requirement for first year (freshman) engineering students at the University of Pittsburgh Swanson School of Engineering, the user does so at his or her own risk. ADENO-ASSOCIATED VIRAL VECTORS AS GENE THERAPY TO TREAT PARKINSON’S DISEASE WITH A CASE STUDY OF VOYAGER THERAPEUTICS Michael Kassabian, [email protected] , Mena 3:00, Abigail Daniels, [email protected], Mahboobin 10:00 a feedback loop and continues the operation. Neurotransmitters from the substantia nigra within the striatum send the processed decision to the putamen for further processing, which provides the striatum with enough information to continue on in the process. If any part of this operation is interrupted, movement will no longer be able to occur [1,2]. Abstract- In humans, genes code for proteins that the body uses to function properly. When mutated DNA is present, genes are coded incorrectly and therefore incorrect protein synthesis occurs. The development of malfunctioning proteins often leads to bigger and sometimes fatal issues such as Parkinson’s disease (PD). One field of medicine called gene therapy involves modifying missing or mutated genes and could potentially offer a remedy for those suffering from PD. An emerging type of gene therapy that has been proven to be fairly effective uses viral vectors to transport new, healthy genes to replace damaged or missing portions of DNA. The viruses function by exploiting the mechanisms that help the virus reproduce. A patient with PD has lost neurons that produce the neurotransmitter dopamine, which is hormone that sends information from the substantia nigra to the chemical receptors located in the putamen. The pars compacta region of the substantia nigra holds the dopaminergic neurons and transmits an enzyme to the putamen. PD causes the death of these dopaminergic neurons- as shown in Figure 1- , so the patient progressively gets worse over time. As less dopamine is transmitted, the presence of the enzyme that converts amino acids into the hormone also decreases. Without the appropriate amount of dopamine production in the basal ganglia, consistent motor functions cannot be made and movements cannot be controlled [3]. Viral vector gene therapy will be analyzed by discussing the specific functions and applications of adenoassociated viruses (AAV). The virus to cell genetic transfer will be explained through the biology of AAV and we will show how the viruses can be used specifically to treat Parkinson’s disease. Additionally, this paper will examine the precise genes that are involved in PD, the systematic process through which the symptoms can be treated by adenoassociated viral vectors, and the significant impact that this procedure could have on the future of gene therapy. Key Words- Adeno-associated viruses, Gene therapy, Mutated DNA, Parkinson’s disease, Viral vectors. DAMAGES INCURRED BY PARKINSON’S DISEASE The Physiological Effect Parkinson’s disease is a degenerative, neurological disorder that prevents movement from occurring correctly. Considering there are almost one million Americans who face this challenge, most people are affected in some way by this incurable disease. The action of moving is a complex process that involves a lot of activity in the brain before the initiation of an action. The input of an action starts in the posterior parietal cortex of the brain, where information is provided in order to make a decision on the movement to be made. Action selection then occurs in the basal ganglia, which is the region that controls movement. The striatum, located within the basal ganglia in the midbrain, then receives information from University of Pittsburgh, Swanson School of Engineering 03.31.2017 FIGURE 1 [4] Visual representation of the neurological impact of Parkinson’s disease Patient Symptoms Every case of PD is unique; some patients experience different levels of symptoms, and some also have varying rates of progression of the disorder. Parkinson’s disease produces primary and secondary motor symptoms as 1 Michael Kassabian Abigail Daniels well as non-motor effects. Primary motor symptoms include a resting tremor, which is one of the most significant features of PD. This shaking that occurs when muscles are relaxed usually begins in one side of the body and typically spreads to the other side as the disorder progresses. Bradykinesia, or slowness of movement, often occurs in patients with PD, making it appear as if the person has a reluctance to move. Although the patient has all the inputs and knows what needs to happen, the signals in the brain are not sent to perform and control physical functions. Therefore, simple everyday tasks such as brushing their teeth, can become almost impossible for patients to manage. Rigidity is also expressed, as patients seem to appear stiff throughout every action they perform. This stiffening factor decreases facial expression, upright balance, and has a tendency to cause problems with the swallowing function which can result in drooling [5]. GENETIC ENGINEERING AND ITS MEDICAL APPLICATIONS Deoxyribonucleic acid (DNA) is the genetic code that links us to our parents and children and controls the complex body processes required for daily life. DNA is made up of long strings containing nucleotide bases, and the combination of three of these bases codes for an amino acid. Amino acids are the building blocks for proteins which are used in every bodily process. When there is a mistake in the code- whether it was passed down genetically before birth or actively throughout a person’s life- it is possible that protein synthesis is altered to either not form proteins at all or to form malfunctioning proteins. A minor inconsistency in one’s DNA may not significantly impact the person’s quality of life; however, when a vital protein is missing or not working properly, consequences may emerge in the form of detrimental disorders such as Parkinson’s disease (PD). There are other symptoms that occur with PD, but they are not as prominent. Among these, freezing can occurtypically during walking. A patient will be moving forward and then suddenly appear to have his or her feet glued to the floor. The reason for this is that the brain signals stop connecting the movement functions, resulting in immobility for the patient. Communication through speech and handwriting also declines. Speech slows and becomes more difficult for the person, and a stammer may appear [6]. Patients may also show signs of non-motor functions decrease that include loss of REM sleep, constipation, mood disorders, loss of smell, and a decrease in blood pressure while standing [7]. These burdening symptoms hinder a patient from ever having a normal life on their own again. This strain not only affects the patient, but also buts emotional and financial distress on their loved ones and can be passed down through future generations. When mutations lead to genetic disorders, there is sometimes a solution via gene therapy. Gene therapy is the process of altering DNA to fix a mistake through the procedure of gene doping, or by using tools such as viral vectors and gene editing equipment. In general, gene therapy requires physically rewiring the DNA of the ailing patient to correct their genetic code. Therefore, when DNA replication takes place, the genes produced will be made from the correctly coded DNA rather than the damaged strands [9]. Gene therapy has the potential to make life more sustainable for people who are burdened with any kind of genetic disorder now, and in the future. The research and testing that goes on now gets the medical community closer to providing better solutions for all kinds of patients in the long run. Gene doping is an area of gene therapy that can be used to rebuild lost muscle mass for the aging or injured, but it has been more commonly used for improving athletic performance. Gene editing tools such as CRISPR Cas9 are typically known to “cut out” damaged strands of DNA [9]. Viral vector gene therapy uses a working section of DNA to replace a mutated section of DNA. The working section of DNA is inserted into an inert virus which is then injected into the patient. This virus then transmits its genetic material into the surrounding somatic cells which will incorporate it into their existing DNA, resulting in a cell that now contains a healthy copy of DNA [9]. Adeno-associated viruses (AAV) are commonly used as vectors because of their ability to precisely penetrate dividing and nondividing cells without causing physical harm to the organism itself. AAVs have shown to produce accurate results consistently and are therefore one of the most commonly used viruses in viral vector gene therapy treatment. Past, Present, and Future of Parkinson’s Disease Since ancient times, people have been aware of this “shaking palsy”. However, only 200 years ago, the disease was brought to life with an official name in a detailed publication by James Parkinson in London. With that being said, people still did not pay much attention to this degenerative disorder for another sixty years when research commenced. Although there is rapid growth of development in this area, to this day, the cause of Parkinson’s disease is unknown, and therefore it cannot be prevented [8].There has been no correlation found through hereditary factors, but PD consistently shows its’ appearance in the latter end of a lifetime. Although there is no way of stopping or slowing down PD, treatments are available to help with the symptoms that affect almost one million Americans. However, since Parkinson’s disease is progressive, most patients stop responding to treatment and often need to acquire constant assistance in order to perform daily routines. Discussed later in this paper are the many different trials that focus on creating a more effective treatment for Parkinson’s disease [3]. Parkinson’s disease is caused by the deterioration of specific neurons in the brain that produce a vital neurotransmitter called dopamine. Dopamine is a hormone that signals the parts of the brain that control motion, and if 2 Michael Kassabian Abigail Daniels not enough of the hormone is produced, the inflicted person will experience varying levels of immobility. As the disease progresses, slight tremors turn into extreme balance and motor skills issues [14]. Currently, a drug called levodopa is used to treat PD by providing a new enzyme that synthetically produces dopamine. However, as the disease progresses, the drug becomes ineffective because it is harder for levodopa to reach the striatum- which is an area of the brain crucial in the motor skills system. This occurs because through the progression of the disease, the amount of the enzyme that converts levodopa into dopamine decreases, creating a resistance to the drug. The use of viral vector gene therapy could potentially provide a successful way to transfer the drug to the targeted area due to the size and function of viruses. Adeno-associated viruses are able to overcome the developed disease and provide a pathway for levodopa to remain a source of effective treatment for PD. Only recently, adeno-associated viruses (AAVs) became one of the most popular viruses to use for treatment via viral vector gene therapy. These viruses have found to be already exposed to over 90% of humans, without harm. This means that these viruses can travel and replicate throughout the body when injected without causing harm to most patients. Adeno-associated viruses are extremely small, containing only one strand of DNA in the genome, and do not have a protective envelope around them. The AAV2 virus the most studied strand- has been found to consistently place itself on the 19th chromosome, making it the only viral vector to succeed in target specificity, providing that a helper virus is not present [11]. AAV viruses have shown their ability to affect cells that can divide as well as cells that don’t reproduce. This information has proven to be extremely useful because it means that cells such as neurons can still be affected by these viruses. The changing of these nervous system cells provides a way to reproduce the newly transported healthy gene for an extended period of time before the cell dies without reproducing [12]. It is consistently difficult to transport macromolecules such as DNA through chemical and physical barriers while still remaining site specific. However, AAVs have shown the possibility of penetrating difficult-to-reach cells after the injection of several strands of the virus. The revelation of this possibility provides a way of treatment for diseases where a surgical procedure would be deemed impossible. AAVs have shown great effectiveness in studies of injection into muscle tissue, retinal cells, and cells within the brain [13]. HOW VIRUSES CAN BE USED AS TREATMENT FOR DISEASES Viral Vectors When a virus attacks the body, it’s genetic material is injected into cells throughout the body. The new viral DNA in the cell then replicates instead of the original cell DNA. This results in codes for more copies of the virus instead of additional copies of the healthy cells. Typically, these agents are seen as harmful, but as new discoveries arise, the viruses can be seen as potential cures or treatments for diseases. Because viruses transport genetic material, there is a potential that they can become one of the best forms of drug delivery. In order to use viruses as vectors, or deliverers, of gene therapy, the original DNA in the virus needs to be removed from the agent so the replacement DNA can take over. Once the new virus is injected into the body, the targeted cells then produce more copies of the healthy gene, and the old, mutated strand of DNA is no longer replicated [9]. The use of AAVs as viral vectors has great promise to the medical world due to the abundance of benefits and the very limited drawbacks. There currently remains a chance that the viruses could not travel to the desired area and infect unintended cells throughout the body. Another risk comes with the inability to automatically stop replication of these viruses once they start. This can create a dangerous overabundance of the DNA being displayed to code for proteins. These viruses have shown unwavering results of target specificity and has proven to be extremely effective in transporting new strands of DNA, while sustaining the effects for a long period of time. Since most humans have already been exposed to adeno-associated viruses, when an AAV is injected into the body, antibodies are not made, providing easy transportation of the virus and long term effects of the new DNA. Because adeno-associated viruses are so small, they are successful in overcoming cellular barriers, but they are limited to the amount of DNA that they can provide. Because of this, more production of the virus will be required, which shows its difficulty as well [11]. Although there are downsides to using AAVs to treat medical disorders, this way of gene therapy gives much promise to improving the quality of lives in the future. The better understood the AAVs are Although the first gene transfer system was recorded in 1983, the first successful viral vector was established around 1990. Ever since then, there has been an abundance of testing to determine and surpass the complications that come with this form of gene therapy. Viral vectors have proven to be difficult to control since they are extremely small and because they are biological material, which means that they don’t always act according to plan. After two decades of testing, results have shown that viruses have consistently been able to transport any new gene implanted into their system. Research has also shown that certain strands of DNA work better with some viruses than others. This information, therefore, produces different results in effectiveness and rate of reaction during trials. Although using viruses as vectors proves to be a very complex, challenging realm, it holds much potential for our future health [10]. Adeno-Associated Viruses 3 Michael Kassabian Abigail Daniels now, the more use they will be to treating symptoms and/or curing diseases for future generations. remove any harmful nature, and it is most likely already in the patients’ bodies so there is little chance of rejection to these new vectors. Below is an image of an AAV2 genome map (figure 2). The genetic material in an adeno-associated virus can be divided into two groups based on functionality. The first group depicted in blue is the the set of base pairs in AAV2 devoted to the replication of the virus. As mentioned above in the section describing the use of viruses in the treatment of diseases, AAV2 replicates at increasing rates when a helper virus is present. The replication base pairs are injected into the host cell which then creates more AAV2 and then subsequently lysis, or disintegrates [18]. This behavior is closer to that of a pathogenic virus and is not desirable for viral vector gene therapy. The gray base pairs are the second group and they code for the protein shell that makes up the actual physical appearance of AAV2 [18]. Since the Rep base pairs are the ones that are actually injected into host cells and are incorporated into their DNA, they are the ones that researchers are interested in. When new genetic material is spliced in, in the form of more base pairs, it too becomes part of the host cell’s DNA [18]. GENETIC MODIFICATION OF ADENOASSOCIATED VIRUSES TO TREAT PARKINSON’S DISEASE Current Treatment of Parkinson’s Disease The most common treatment for Parkinson’s disease is a drug called levodopa [3]. When PD begins to take its toll on the substantia nigra and the brain becomes less capable of creating dopamine, levodopa is used to fill that gap [3][14]. When the body needs to produce more dopamine, first an amino acid called L-dopa must be made. Neurons in the midbrain express a gene to create aromatic L-amino acid decarboxylase (AADC), an enzyme that transfers L-dopa into more dopamine which is received in another part of the brain called the putamen. This influx of dopamine allows the brain to re-establish motor function [3]. levodopa is a clinically proven way to ensure that there is enough L-dopa in the system to manufacture enough dopamine for normal bodily functions even when the person’s body has a declining amount of proper neurons and enzymes [15]. levodopa, however, is not a permanent solution; It can help when there are still some AADC enzymes to turn it into dopamine, but as PD continues to cause degenerative issues in the brain, these enzymes become more and more of a limiting factor [3]. New Possible Treatment And How It Works For the last four years Voyager Therapeutics has been in human trials for a new therapy to remedy this decline in dopamine production [16]. Voyager Therapeutics is a company devoted to developing genetic therapies for diseases in the central nervous system. The company is based in Pittsburgh and are currently researching a pathway to get around the deterioration of the substantia nigra by skipping it all together [16]. While PD is very damaging to certain areas of the brain, one area that it seems to have little effect on is the putamen, the location of the dopamine receptors. Unfortunately, there are not many AADC enzymes in the putamen, so this will most likely prove a difficult venture for Voyager Therapeutics [3]. The drug that Voyager Therapeutics is testing would hopefully increase the number of AADC enzymes in the putamen, allowing it to both produce and receive dopamine, thus returning the former function of the dopamine pathway. FIGURE 2 [18] Depicts the function of the 4,680 base pairs in AAV2 Voyager Therapeutics is not the first to use AAV2 for these reasons. Pharmaceutical companies, such as GSK are also working on incorporating AAV2 in gene therapies [19]. The real innovation comes with the second part of this treatment - The gene for which AAV2 is a vector, is called hAADC, which when expressed, produces the AADC enzyme. This combination of viral vector and gene is to be administered to the putamen. Once in position, cells in the putamen will have the ability to express hAADC and create the AADC enzyme. Dopamine can then be produced in the same area of the brain that receives it, avoiding the deteriorating substantia nigra and creating an all-around more efficient dopamine pathway. The specific treatment that Voyager Therapeutics has created is a viral vector transport called VY-AADC01. The viral part of this viral vector is a virus called the AAV2. AAV2 acts slightly atypically from normal viruses, causes no immune system reaction, is not a pathogen, and, according to Voyager Therapeutics, is a virus, “to which >90% of humans have been exposed” [17]. That is the genius of using AAV2. This viral vector does not require any reprogramming to Benefits of New Treatment 4 Michael Kassabian Abigail Daniels Voyager Therapeutics is still in the human trial phase of their breakthrough treatment, but they have been testing VY-AADC01 since 2013. On December 7, 2016 Voyager Therapeutics gave their interim results for the phase 1b testing they had been conducting for the past three years. Phase 1 means that they are mainly testing the safety of increased levels of dosing with VY-AADC01, but because they are testing on patients who are in advanced stages of PD, they have also collected data on the effectiveness of their drug. Patients were asked to keep journals recording when they were on and off dosing, and when they experience trouble moving. Researchers also utilized the Unified Parkinson’s Disease Rating Scale III (UPDRS III) to analyze their results. This scale aims to determine the extent to which one is affected by PD and has 31 categories from speech to posture. Each category is ranked from 0 to 4, 0 being the least impact on that category and 4 being the most. Using the reports from each patient and the UPDRS III, Voyager Therapeutics researchers noticed that “treatment with VYAADC01 resulted in a 14-point, or 44%, improvement in UPDRS-III off medication, a 9-point, or 55% improvement in UPDRS-III on medication” [16]. This is great news for the improvement of advanced PD as it would enable sufferers to live with more control over their own bodies and more independence in their lives overall. However, that is not all that Voyager is hoping to improve with their trials. They are also working on ways to make the administration process more efficient, quicker and safer. have to be monitored before, during, and after administration to ensure that there are no helper viruses present. FIGURE 3 [21] Depicts the life cycle of AAV in the body with the presence of a helper virus. Another area in which safety is of huge importance in this procedure, is the actual administration of the drug. The viral vector carrying the hAADC gene is injected directly into the putamen. This can be dangerous as the putamen is very close to the center of the brain, and any inaccuracies in the injection site could be detrimental. To remedy this, researchers at Voyager Therapeutics are aided by magnetic resonance imaging (MRI) which provides them with real time images of the brain throughout the procedure [16]. This not only allows for accuracy of the injection, but could also cut down on total time in surgery. It is also important for these researchers to make sure they are performing each dosing in the most efficient and safest way possible, so it is their duty to find ways to improve their surgical technique and limit any negative side effects in their patients. PAVING THE WAY FOR GENETIC ENGINEERING Ethical Considerations of AAV2 Treatment When a new treatment, especially one involving surgical procedures and injection of viruses, is being tested, there are ethical issues that have to be taken into consideration. The biggest issue people often have about viral vector gene therapy comes from concerns about safety. A lot of testing needs to be done to ensure the health of patients involved in viral vector studies because of the wide range of inflammatory immune responses that different viruses can cause [20]. These responses can be especially dangerous for the elderly, and those with weakened immune systems, such as in people with PD. This is less of an issue with AAV2 because of its relatively nonpathogenic nature and high rate of appearance in the population [3]. However there are still some cases, like if the patient has certain preexisting conditions, where this virus could possibly be very harmful. Below is an image of two possible life cycles for AAV2. When AAV infects a cell and there are no helper cells present in the body, AAV’s viral genes are dormant. However, when there is a co-infection of Adenovirus, the AAV virus goes into productive infection stage, where the viral genes become active, and the host cell begins creating new AAV cells. For this reason, the health of patients taking this new drug will Improving the Innovation As these trials go on, Voyager Therapeutics is working on ways to improve their own procedure. They are still in human testing phase 1 but they are planning to move int o placebo trials by mid 2017 and are swiftly on their way towards FDA approval for commercial use. One way that they are trying to improve treatment is through varying angles of administration of VY-AADC01 to the putamen. Researchers at Voyager Therapeutics believe that administering doses through the occipital lobe in the back of the brain could be one way to improve results. By dosing through the back of the brain, there is a more direct path to the putamen. This more direct dosage could lead to better deliverance of the drug and a better coverage of the putamen all around. If this technique proves successful, it could mean fewer doses necessary and shorter surgery times [16]. This is a very important development to make, as factors like old age and complications during surgery can lead to significantly higher mortality rates [22]. Quicker and more efficient surgeries lead 5 Michael Kassabian Abigail Daniels to fewer chances for mistakes and fewer deaths from complications. Another way Voyager Therapeutics is attempting to improve their procedure is through some extra preventative procedures. One patient in their phase 1b trials experienced some complications during surgery that resulted in a blood clot and subsequent arrhythmia. Researchers made sure to add a surgical protocol to prevent any such incidents from occurring and no further complications were seen [16]. Besides the continuous work to make this procedure as safe as possible, this drug being effective after only a single use and the success of these trials hopefully leading to VYAADC01 becoming a common treatment, makes the future of patients with PD look very bright. coming in right behind. The benefit of non viral vector gene therapy over viral is that there is a drastically reduced rate of inflammatory immune reactions. This is highly desirable and any advancements in either form of gene therapy brings us closer to getting the best of both methods. Voyager Therapeutics’ success with AAV2 is another step in bridging the gap between efficiency and safety. Making Life Sustainable Through Viral Vector Gene Therapy Sustainability can technically be defined as the “human use of resources which preserves the environment so that human needs can be met also by future generations,” [23]. However, different applications of that definition can change depending on the topic of discussion. For example, a computer engineer might have a focus of designing programs that are useful for current and future generations, whereas a chemical engineer might work on designing products that are harmless to the environment. In the medical world, advancements usually focus on sustaining the quality of life. This allows doctors treating a human being suffering from an unfortunate disease, injury, or other mishap, to improve their condition by either alleviating the symptoms or fixing the problem all together. After the new technology is introduced to the patient, if it does in fact sustain the quality of life, the patient will no longer struggle immensely, but have much more ease in their everyday life, enabling them to enjoy things in a way they may have never thought possible. This provides tremendous help for current generations, and could also support future generations as well. For example, a mother could raise her children better if she is not otherwise occupied with taking care of herself and struggling to perform normal functions. Possible Future Developments In the long run, the success of these trials may prove the effectiveness of AAV2 as a viral vector. Another benefit of AAV2’s success in this trial is its use in future treatments. Currently, Voyager Therapeutics is developing a treatment for Alzheimer's Disease utilizing an adeno- associated viral vector, giving AAV2 even more chances to prove itself. As mentioned above, Voyager Therapeutics is not the first company to work with this virus, and as more and more companies experiment in gene therapy, AAV2 may become a standard in the field of medicine, helping to cure many varieties of genetic diseases and disorders. With that end in mind the there are some areas where gene therapy could develop more as a field. One way to improve viral vectors in general is through the use of transgene promoters, which regulate when and where the new gene is active after it is brought in through a viral vector [20]. Viruses are not always the most effective gene transporters, and even when they are successful, there is no guarantee that the gene is taken up in the tissue and expressed correctly. The research of transgene promoters for viral vectors could lead to discovering how to make them even more efficient. Throughout the aftermath of inventing new medical technologies comes the focus of sustaining economic resources. It is typically known that new procedures or drugs are extremely expensive, and can cause a huge financial burden on patients and their loved ones. For those who are wealthy, this might not be a concern for them, and they have access to the best technologies in the world. However, the majority of Earth’s population does not have sufficient funds to pay for all the high end medical treatments. Another factor that comes with producing innovative advancements is discovering how to allow the population to benefit from the new developments fairly. This means providing ways for all patients to have access to treatments without creating the new kind of stress that involves their finances that could potentially just be passed down onto future generations. Engineers invent new technologies in order to solve problems in the real world through applications of theoretical knowledge. When working on a new project, all engineers must discuss the sustainability aspect and how it can benefit the world now and in the future. Bioengineers using viral vectors have the goal of giving current patients better lives, Another possible avenue for viral vector gene therapy is the research and testing of different stereotypes of the adeno-associated virus. So far, AAV1, AAV2, AAV5, AAV7, AAV8, and AAV9 have all been researched and used in gene delivery studies [18]. The work that Voyager Therapeutics is doing with AAV2 is just part of discovering the best variety of adeno-associated virus and determining which could be best to use in different situations. The success of AAV2 for the treatment of PD means that we know just that much more about how to use these viruses and how much they can help to develop the field of gene therapy. One last way that viral vector gene therapy in general can be of use to the field of medicine is by helping researchers in the medical field determine how to mirror their properties onto non viral transport systems [20]. Viral vectors are some of the most effective methods for gene therapy known to science with non viral methods of treatment like vaccines 6 Michael Kassabian Abigail Daniels and also providing more effective treatments so the people of future generations have more quality lives as well. putamen, thus restoring the dopamine pathway along with the use of the current treatment levodopa. Voyager Therapeutics have successfully begun human trials on using adeno-associated viruses to transport genes that code for a missing enzyme that enables effective drugs to be used to treat Parkinson’s disease [16]. This means that the theoretical concept of using viral vectors as a way of gene therapy has become a practical application to benefit people today. Since much progress has been made on this development, drawbacks have also been discovered that reduce the sustainability factor. It has been noted that by using viruses as vectors there comes a risk of infecting unwanted cells. If a virus carrying a new gene accidentally infects a patient's’ reproductive cells, then that patient will not receive the benefits of the new DNA due to lack of propagation throughout the body that would affect other types of cells. Instead though, the DNA of that patient’s offspring could become mutated due to the new gene that was forced in. The children would then have potential, genetic dangers that could come about from the unnatural addition of unnecessary DNA; however exact conditions have not been revealed through testing yet. There are still hurdles to get over and places for improvement, but as Voyager Therapeutics’ researchers work toward the success of their drug, they are also working toward the success of viral vector gene therapy. Gene therapy is relatively new, so while AAV2 could be the biggest achievement for the treatment of Parkinson’s Disease since the discovery of levodopa 40 years ago, it will also set a great precedent for viral vectors in general as viable treatments for genetic diseases. SOURCES [1]- A.Sinicki. "What Happens in the Brain When You Move Your Body." The Bioneer. 9.18.2015. Accessed 2.26. 2017. http://www.thebioneer.com/what-happens-in-the-brainwhen-you-plan-and-execute-a-movement/ [2]- “The Role of the Basal Ganglia in Movement.” Boundless. 10.12.2016. Accessed 2.2.6.2017. https://www.boundless.com/physiology/textbooks/boundless -anatomy-and-physiology-textbook/peripheral-nervoussystem-13/motor-pathways-135/the-role-of-the-basalganglia-in-movement-724-8216/ [3]- “Product Pipeline: Parkinson’s Disease.” Voyager Therapeutics. 2.26.17. http://www.voyagertherapeutics.com/programs.php [4]- “Structural Analysis of Human Brain from Parkinson's Disease Patients.” C-CINA. 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Accessed 2.25.2017. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2570152/ [12]- D. Bleijs, PhD. “Adeno Associated Viral Vectors.” Gene Therapy Net. Accessed Although this a risk comes with serious fallbacks, scientists have worked on minimizing this risk to provide insurance of the treatment for all patients [12]. Since human trials are still going on, this treatment has not been made to the public. Therefore, costs of the advancement have not been sufficiently analyzed and set into place for public use. Although clinical trials have not been fully completed, progress reports have been released by Voyager Therapeutics. All original surgeries were successful and over the past six to twelve months, patients have reported a decrease in dyskinesias- their impaired movements- throughout their days by 1.1-2.2 hours per day. Researchers have also reported a 42%-56% increase in effectiveness of current treatment of the drug due to the newly synthesized enzyme making it capable to be used. Lower dosages of the medication required have also been noted [16]. Although there is still much to find out about this treatment, there is great promise in providing sustained life for patients with PD by using adeno-associated viruses, as seen in the positive interim results. REVIEW OF AAV2 AS A TREATMENT FOR PARKINSON’S DISEASE Parkinson’s Disease impacts thousands of people and their families nationwide every year. The cause of PD is not fully understood yet, but the immediate conditions such as loss of motor function, and mood disorders can be explained by the decline in dopamine production. Voyager Therapeutics is currently studying the effects of their new viral vector treatment for PD as they establish its safety in large doses. Their treatment involves the non-pathogenic virus AAV2 and the hAADC gene to be applied to the 7 Michael Kassabian Abigail Daniels 01.06.2017.http://www.genetherapynet.com/viralvectors/adeno-associated-viruses.html [13]- M. Bartel, J.Weinstein, D.Schaffer. “Directed Evolution of Novel Adeno-Associated Viruses for Therapeutic Gene Delivery.” Gene Therapy. Nature. 03.08.2012. Accessed 01.24.2017. http://www.nature.com/gt/journal/v19/n6/full/gt201220a.htm l [14]- “What is Parkinson’s Disease?” Parkinson’s Disease Foundation. 2017. Accessed 01.24.2017. http://www.pdf.org/about_pd [15]- “L-DOPA.” Examine. 2017. Accessed 2.28.17. https://examine.com/supplements/l-dopa/ [16]- “Voyager Therapeutics Announces Positive Interim Results from Phase 1b Trial of VY-AADC01 for Advanced Parkinson’s Disease.” Voyager Therapeutics. 10.07.17. Accessed 2.26.17. http://ir.voyagertherapeutics.com/phoenix.zhtml?c=254026 &p=irol-newsArticle&ID=2228332 [17]- “AADC Gene Therapy for Parkinson's Disease (AADC).” Clinical Trials. 02.24.17. Accessed 2.25.17. https://clinicaltrials.gov/ct2/show/NCT01973543?term=gene +therapy+parkinson%27s&rank=1 [18]- “Introduction to AAV.” Vector Biolabs: The Gene Delivery Company. 2016. Accessed 2.27.17. http://vectorbiolabs.com/vbs/page.html?m=281 [19]- “GSK Sparks Off The Gene Therapy Resurgence.” Labiotech. Accessed 2.28.17. http://labiotech.eu/gsk-sparksoff-the-gene-therapy-resurgence/ [20]- C. Thomas. “Progress and Problems with the use of viral vector for gene therapy.” Scitable Nature Education. 2003. Accessed 3.2.17. http://www.nature.com/scitable/content/Progress-andproblems-with-the-use-of-14813 [21]- S. Daya. “Gene Therapy Using Adeno-Associated Virus Vectors.” Clinical Microbiology Reviews. October 1, 2008. Accessed 3.29.17. http://cmr.asm.org/content/21/4/583.figures-only [22]- Haeml. “Surgical outcomes for patients aged 80 and older: morbidity and mortality from major noncardiac surgery.” Journal of the American Geriatrics Society. 2.24.2005. Accessed 2.28.17. https://www.ncbi.nlm.nih.gov/pubmed/15743284. [23]- M.Pautasso. “Publication Growth in Biological SubFields: Patterns, Predictability and Sustainability.” Sustainability Vol. 4 Issue 12. 11.19.2012. Accessed 03.22.2017 http://www.mdpi.com/2071-1050/4/12/3234/htm ACKNOWLEDGEMENTS We would like to thank our co-chair, Mikayla Ferchaw, for the time that she has dedicated to our paper, as well as helping to mentor us as first year engineering students. Our chairs, Anthony Pulleo and Suyesh Acharya, have been extremely helpful in guiding us along the path to the conference, which we are very grateful for. We appreciate all the comments and direction that has been provided by our writing instructor, Janet Zellman. We’d both like to also thank our high school biology teachers for sparking our interests in this area. 8
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