Variations in essential oil compositions of Lavandula pubescens (Lamiaceae) aerial parts growing wild in Yemen Rowaida N. Al-Badani*a), Joyce Kelly R. Da Silvab)c), William N. Setzer*b), Nasser A. Awadh Alid)e), Bushra A. Muharame), and Ahmed J. A. Al-Fahadf) a ) Department of chemistry and chemistry of natural product, Faculty of Pharmacy, University of Science and Technology, Sana’a, Yemen. (e-mail: [email protected]) b ) Department of Chemistry, University of Alabama in Huntsville, Huntsville, AL 35899, USA (phone: 1-256-824-6519; fax: 1-256-824-6519; e-mail: [email protected]) ) Programa de Pós-Graduação em Biotecnologia, Universidade Federal do Pará, Belém, PA 66075-900, Brazil (e-mail: [email protected]) c d ) Pharmacognosy Department, Faculty of Clinical Pharmacy, Albaha University, Al Baha, KSA (e-mail: [email protected]) ) Department of Pharmacognosy and Phytochemistry, Faculty of Pharmacy, Sana’a University, Sana’a, Yemen (e-mail: [email protected]) e f ) Department of Chemistry, Faculty of Science, Albaha University, Al Baha, KSA (e-mail: [email protected]) Abstract: Lavandula pubescens Decne. is one of five Lavandula species growing wild in Yemen. The plant is used in Yemeni traditional medicine, and the essential oil tends to be rich in carvacrol. In this work, L. pubescens was collected from eight different locations in Yemen, the essential oils obtained by hydrodistillation, and the oils analyzed by gas chromatography – mass spectrometry (GC-MS). Principal component analysis (PCA) and hierarchical cluster analysis (HCA) were used to differentiate between the L. pubescens samples. The essential oils were rich in carvacrol (60.9-77-5%), with lesser concentrations of carvacrol methyl ether (4.011.4%), caryophyllene oxide (2.1-6.9%), and terpinolene (0.6-9.2%). The essential oil compositions in this study showed very high similarity, but it was possible to discern two separate groups based on minor components, in particular the concentrations of terpinolene, carvacrol methyl ether, m-cymen-8-ol, and caryophyllene oxide. Keywords: gas chromatography – mass spectrometry; cluster analysis; principal component analysis; carvacrol 1 Introduction The genus Lavandula (Lavender) in the Lamiaceae comprises about 39 species, five of which are wild-growing in Yemen, namely L. atriplicifolia Benth., L. citriodora A.G. Mill., L. coronopifolia Poir., L. dentata L., and L. pubescens Decne. All species have their own distinct smell and show a strong preference for volcanic soil [1]. A large part of the aroma and flavor of the Lavandula genus is due to the presence of essential oils, some constituents of which have also shown biological activity and could be responsible for the plants’ use in folk medicine [2]. Some Lavandula species, and in particular L. dentata and L. pubescens, have been used in Yemeni folk medicine. L. pubescens is used as an antiseptic and as a remedy for broncho-pulmonary infections [3][4], as a carminative, insect repellent, and antiseptic [5]. L. pubescens essential oils from Asir, Saudi Arabia [6] and Taiz, Yemen [7], were both rich in carvacrol (85.3% and 20.6%, respectively). L. pubescens essential oil has shown antibacterial activity against Salmonella enterica and Staphylococcus aureus, antifungal activity against Aspergillus fumigatus and Candida albicans [8], and larvicidal activity against Culex pipiens [6]. The high carvacrol concentration in L. pubescens likely accounts for the observed bioactivity and its use in folk medicine. L. pubescens is one representative of natural vegetation growing in Yemen. It occurs naturally in mountainous regions including Taiz, Ibb, Yarim, Alkafer, Dhamar, Sana’a, Amran, Huth, Khamir, Wadi Dhahr, Manakhaa, Shahara, Almahwit, Almahabishah and Hajjah town. The plant grows mainly in the slopes and wadis (streams), which are characterized by steep ground with shallow, rocky soil [9]. There are several reports on the essential oil analyses of Lavandula species and the results revealed that the essential oil content varies in different species growing in different parts of the world. The percentage of the major chemical constituents (mainly oxygenated 2 monoterpenoids, monoterpene hydrocarbons and sesquiterpenoids) invariably differ from species to species [10][11]. It was found that the variation in the essential oil composition is influenced mainly by individual genetic variability, variation among different plant parts and their different stages of development, and modifications due to the environment, e.g., weather, light, latitude, altitude, soil, stress, etc. These factors, in particular the genetic makeup, influence the plant’s biosynthetic pathways and, consequently, the relative proportion of the main constituents [12][13]. Along these lines, several different chemotypes, based on essential oil compositions, have been defined for Lavandula spp. [14][15]. For example, L. pedunculata Cav., which has at least 10 subtaxa [16], has two recognized chemotypes from Portugal [17][18]. Similarly, L. dentata has nine different subtaxa [16], and two different chemotypes have been found in Tunisia [19]. L. stoechas L. has 32 recognized subtaxa [16], and an analysis of eleven different populations of L. stoechas from Algeria revealed three clusters [20]. Because of the chemical diversity observed in Lavandula essential oils, we hypothesized that L. pubescens from Yemen may also show similar diversity in its essential oils. The purpose of this study, therefore, was to determine chemical compositions of essential oils from eight samples of L. pubescens plants collected from various localities in Yemen in order to examine possible chemodiversity based on geographical location, and to define the potential chemotypes within this species growing wild in Yemen. Results and Discussion L. pubescens samples were collected from eight different sites in Yemen (Table 1). A total of 56 compounds were identified in the L. pubescens essential oils from Yemen, accounting for 97.7-99.8% of the oil compositions (Table 2). The major components in L. pubescens essential oils were carvacrol (60.9-77-5%), carvacrol methyl ether (4.0-11.4%), caryophyllene 3 oxide (2.1-6.9%), and terpinolene (0.6-9.2%). The compositions in this study are qualitatively similar to those previously reported from Saudi Arabia [6] and Yemen [7]. Table 1. Collection data and essential oil yields of the samples of Lavandula pubescens collected in Yemen. Collection date Altitude Oil Yield Latitude Longitude (time) (m) (%) ± SDa 26/10/2015 Taiz 13º 20′ 8.8″ N 44º 8′ 31.7″ E 1755.3 0.7± 0.028 I (9 am) 17/10/2015 Sana’a 15º 26′ 29.5″ N 44º 6′ 39.3″ E 2419.1 0.4 ± 0.028 II (7-9 am) 15/10/2015 Amran 15º 7′ 44.1″ N 44º 6′ 51.8″ E 2733.8 0.5 ± 0 III (8-10 am) 3/10/2015 Ibb 14º 16′ 34.6″ N 44º 10′ 56.6″ E 1556.3 0.6 ± 0.057 IV (8 am) 15/10/2015 Hajjah city 15º 49′ 59.9″ N 43º 24′ 59.9″ E 1446.9 0.5 ± 0 V (8 am) 25/10/2015 Almahabeshah 15º 57′ 0.1″ N 43º 26′ 24.0″ E 1510.0 0.5 ± 0 VI (9-11am) 22/10/2015 Almahweet 15º 28′ 0.6″ N 43º 28′ 47.6″ E 1335.0 0.4 ± 0.028 VII (8-9 am) 3/11/2015 Dhamar 14º 32′ 23.4″ N 44º 18′ 0.7″ E 2451.0 0.4 ± 0 VIII (7 am) a The yields are averages of four replicates collected from several different plants at each collection site. Sample Collect site The occurrence of carvacrol as the major compound is common for essential oils from Lavandula species. The main components of L. multifida oil were carvacrol (65.1%) and βbisabolene (24.7%), while high proportions of (E)-β-ocimene (26.9%), carvacrol (18.5%) and β-bisabolene (13.1%), characterized L. coronopifolia oil [21]. The oil of L. coronopifolia from Morocco was rich in carvacrol (48.9%), β-caryophyllene (10.8%) and caryophyllene oxide (7.7%) [22]. In order to differentiate between the analyzed L. pubescens samples, a hierarchical cluster analysis (HCA) using the chemical profile has been carried out and the resulting dendrogram is shown in Fig. 1. The samples (LpI – LpVIII) showed a high similarity level (98.96%). 4 Table 2. Chemical compositions of essential oils of Lavandula pubescens from Yemen. Component β-Pinene Myrcene α-Phellandrene δ-3-Carene α-Terpinene p-Cymene Limonene 1,8-Cineole (Z)-β-Ocimene (E)-β-Ocimene Terpinolene Linalool endo-Fenchol allo-Ocimene neo-allo-Ocimene Cyclononanone trans-3-Caren-2-ol (E)-Epoxy-ocimene Citral Terpinen-4-ol m-Cymen-8-ol p-Cymen-8-ol α-Terpineol β-Cyclocitral p-Menth-1-en-9-al Carvacrol methyl ether Carvotanacetone Carvacrol trans-Pinocarvyl acetate Eugenol α-Duprezianene RIcalca 985 987 997 1003 1011 1020 1023 1027 1035 1046 1088 1100 1112 1131 1134 1134 1134 1147 1175 1175 1183 1186 1198 1200 1216 1235 1245 1291 1302 1357 1388 RIlitb 979 990 1002 1011 1017 1024 1029 1031 1037 1050 1088 1096 1116 1132 1140 Lp-I 2.60 0.42 0.14 0.60 0.61 0.76 2.01 0.12 0.27 1244 1247 1299 1298 1356 1388 Lp-III 0.98 0.26 0.27 Lp-IV 1.39 1.57 0.32 0.29 0.26 0.31 0.58 0.72 0.14 1.14 7.53 0.06 0.15 0.06 Lp-V 1.07 0.10 0.38 0.29 1.18 Lp-VI 0.80 0.09 0.21 0.12 0.23 0.26 3.86 0.13 Lp-VII 1.15 Lp-VIII 1.08 0.99 0.07 0.11 0.27 0.30 0.44 0.72 2.20 0.08 2.22 0.84 0.83 0.17 0.27 0.18 0.17 1136 1142 1174 1174 1179 1182 1186 1217 Lp-II 0.97 1.03 0.28 0.44 0.44 0.37 0.39 0.39 0.30 0.05 9.16 0.07 0.09 0.13 0.31 0.16 0.05 0.10 0.09 2.03 2.16 0.57 1.28 0.53 5.90 0.33 4.32 0.30 67.83 0.63 0.23 0.86 0.76 0.69 0.18 0.45 0.16 3.30 0.33 2.78 0.16 7.31 0.09 0.48 1.75 0.09 0.13 1.94 0.10 2.88 6.95 0.17 11.39 3.45 6.74 3.96 72.72 60.87 9.52 2.27 61.79 73.28 75.77 0.11 0.10 0.12 77.46 0.09 0.16 0.33 69.82 0.09 0.14 0.05 0.12 0.05 5 β-Caryophyllene 1418 1419 2.08 3.74 1.96 2.47 3.38 3.57 1.95 1432 1436 0.10 -Elemene α-Humulene 1451 1454 0.12 0.19 0.13 0.15 0.19 0.18 0.12 (E)-β-Ionone 1484 1487 0.06 0.05 Aciphyllene 1498 1501 0.05 β-Bisabolene 1509 1505 2.46 1.65 2.42 2.41 2.08 2.10 2.04 cis-Dihydroagarofuran 1519 1520 0.11 Silphiperfol-5-en-3-one B 1546 1551 0.10 Germacrene B 1554 1561 0.10 Silphiperfol-5-en-3-one A 1570 1575 0.17 Caryophyllene oxide 1581 1583 2.13 3.74 2.65 5.22 5.91 6.92 5.00 Guaiol 1596 1600 0.08 0.09 0.07 0.07 0.11 0.09 0.08 Rosifoliol 1605 1600 0.21 Humulene epoxide II 1606 1608 0.36 0.34 0.30 0.41 0.26 0.29 1,10-di-epi-Cubenol 1612 1619 0.09 0.08 Caryophylla-4(12),8(13)dien-5-α-ol 1633 1640 0.13 0.09 0.12 0.11 0.20 0.09 0.12 -Eudesmol 1636 1632 0.30 0.08 0.07 epi-α-Cadinol 1638 1640 0.07 β-Eudesmol 1647 1649 0.44 0.45 0.34 0.55 0.36 0.32 Pogostol 1651 1653 0.08 0.11 0.08 0.08 0.11 0.09 α-Eudesmol 1654 1652 0.14 0.18 0.16 0.14 0.34 0.25 0.20 Bulnesol 1664 1670 0.10 14-hydroxy-9-epi-(E)Caryophyllene 1667 1669 0.13 0.09 0.18 0.11 0.19 0.07 0.17 Germacra-4(15),5,10(14)trien-1-α-ol 1690 1685 0.05 α-Bisabolol 1691 1685 0.05 Monoterpene hydrocarbons 7.41 13.43 3.56 12.57 3.02 5.57 7.12 Oxygenated monoterpenoids 81.00 75.42 83.99 76.51 82.0 83.59 82.09 Sesquiterpene hydrocarbons 4.66 5.83 4.51 5.03 5.65 5.90 4.16 Phenylpropanoids⁄Others 0.26 0.36 0.34 0.10 0.12 0.21 Total 99.63 99.16 99.76 99.23 99.66 99.22 99.64 a RIcalc = Calculated retention indices determined with reference to a homologous series of n-alkanes on an HP-5ms column. b RIlit = Retention indices published in Adams (2007) [23]. 6 0.08 2.54 5.52 0.06 0.26 0.08 0.09 0.22 0.17 0.13 5.25 83.16 2.62 0.12 97.68 Figure 1. Dendrogram obtained by hierarchical cluster analysis (HCA), based on the composition of essentials oils from Lavandula pubescens. Despite the similarities between the essential oils, we were able classify the samples into two separate groups (Fig. 1). Group 1 is composed of samples Lp-I, LpIII, Lp-V, Lp-VII and Lp-VIII and shows a similarity level of 99.5%. In the oils Lp-I, Lp-III, Lp-VII and Lp-VIII, the main compounds were carvacrol, carvacrol methyl ether and caryophyllene oxide with average concentrations of 72.9, 5.9, and 5.4%, respectively. However, sample Lp-V showed a high content of carvacrol (61.8%), carvacrol methyl ether (9.5%) and m-cymen-8-ol (7.3%). In addition, higher concentrations of oxygenated sesquiterpenoids (6.3 to 8.8%) were detected in this group. Group 2 is composed of samples Lp-II, Lp-VI and Lp-IV and shows a similarity level of 99.3%. The samples Lp II and Lp-VI showed the highest concentrations of monoterpene hydrocarbons (13.4 and 12.6%) and lower concentrations of oxygenated monoterpenoids (75.4 and 76.5%) in comparison with other samples. The oils Lp-II and Lp-VI showed as the main compounds carvacrol 7 (69.8 and 77.5%) and terpinolene (9.2 and 3.6%). Furthermore, in these samples were detected lower concentrations of carvacrol methyl ether (4.3 and 3.5%) and caryophyllene oxide (2.1 and 2.7%). The main compounds of Lp-IV oil were carvacrol (60.9%), carvacrol methyl ether (11.4%) and terpinolene (7.53%). Recently, principal component analysis (PCA) has been shown to be an important multivariate statistical method that can be applied to differentiation of chemical composition of essential oils among individuals from different populations [24][25]. PCA analysis of the L. pubescens essential oils in this work shows that the components PC1 and PC2 have explained 100% of phytochemical variation among all samples, which were classified in three groups with higher similarity (Fig. 2). The first PC (PC1) explained 99.3%. Generally, the major variation of the data can be represented by the first component [26]. PC1 had positive correlations with terpinolene and carvacrol methyl ether and negative correlations with carvacrol. The more positive loadings were observed in samples Lp-II, Lp-IV and Lp-V, which displayed the lower concentrations of carvacrol with values of 67.83, 60.87 and 61.79%, respectively. PC2, with only 0.99% of variance showed high positive contributions from minor compounds such as p-cymen-8-ol, eugenol and βcaryophyllene, and negatively correlated with m-cymen-8-ol, carvacrol methyl ether, caryophyllene oxide and β-pinene. Group I is characterized by samples Lp-II and Lp-VI (see Fig. 2), which displayed more positive loadings in PC2 (0.573 and 0.385, respectively). The oil Lp-II showed a higher concentration of terpinolene (9.16%). However, there is similarity between Lp-II and Lp-VI due to the concentrations of carvacrol methyl ether (4.32 and 3.45%, respectively), β-caryophyllene (3.74 and 3.57%, respectively) and other minor components. Group II includes the samples Lp-I, Lp-III, Lp-IV, Lp-VII and 8 Lp-VIII, which the main constituents were carvacrol (60.87-75.77%), carvacrol methyl ether (3.96-11.39%), caryophyllene oxide (3.74-6.92%) and terpinolene (1.147.53%). Group III was composed of the individual sample Lp-V, which the main compounds were carvacrol (61.79%) and carvacrol methyl ether (9.52%). In addition, this sample showed higher concentrations of m-cymen-8-ol (7.31%) and caryophyllene oxide (6.92%). Figure 2. Bidimensional plot of first two components obtained by PCA analysis of Lavandula pubescens based on chemical composition of the essential oils. There is a clear relationship between mean annual rainfall and topography in Yemen. Rainfall ranges from of 400-800 mm in the southern, central, and western highlands and decreases steadily to below 300 mm in northern and eastern highlands. Average temperatures are dominantly controlled by altitude [27]. Climate data for the collection sites in this work are summarized in Table 3. Soil surveys have shown that most Yemeni soils are calcareous, tend to be alkaline (pH ~ 7.0-7.8), with low levels of organic matter. Available nitrogen is generally low to very low, with medium to 9 very low levels of phosphates, and high levels of potassium (Table 3) [28][29]. In order to determine any correlation between the principle components of the essential oils and the geographical location, elevation and climatic conditions, Pearson’s correlation coefficient was carried out. As shown in Table 4, Pearson correlation (p < 0.05) reveals that β-pinene concentration negatively correlates with latitude, while myrcene concentrations positively correlates with rainfall. The other major components showed no statistically significant correlations to climatic or location data; the surprising situation is the improbable similarity of the essential oils, despite the differences in collection sites. Table 3. Climate data and soil properties for the Lavandula pubescens collection sites in Yemen. Soil Propertiesd Collection site a RF (mm) HT (ºC) LT (ºC) b c pH OM N P K Taiz 400 25 9 7.4 L L L H Sana’a 350 25 9 7.8 VL VL L H Amran 300 25 9 7.9 VL VL VL H Ibb 700-800 18 11 7.2 M F M H Hajjah city 300-400 22 8 7.5 L L L H Almahabeshah 300-350 22 8 7.4 M L L H Almahweet 350-400 25 9 7.7 L L L H Dhamar 400 20 6 7.8 VL VL VL H Average annual rainfall (mm) [28][29]. Average High Temperature (October/November), ºC [30]. c Average Low Temperature (October/November), ºC [30]. d Soil properties taken from [28][29], OM = organic matter, N = nitrogen, P = phosphates, K = potassium, L = low, VL = very low, M = medium, F = fair, H = high. a b Analogous to the results in this study, the chemical composition of floral essential oils of L. stoechas collected from three areas of Sicily (Italy) did not display 10 significant variation in the main component, the oxygenated monoterpenoid fenchone (52.8-71.1%). However, the essential oils revealed a high variability in minor compounds as (0.1-12.8%) and camphor (6.6-12.1%) [31]. On the other hand, the EOs of twelve wild Tunisian populations of L. multifida showed significant chemical variation between their main compounds: carvacrol (10.73 – 42.99%), β-bisabolene (12.23 – 21.00%), acrylic acid dodecyl ester (2.31 – 25.9%) and β-phellandrene (3.13 – 17.21%). These data were analyzed by principal component analysis (PCA) and hierarchical cluster analysis (HCA) and divided into three groups, which were defined by variations in the minor components, such as caryophyllene oxide (trace – 42.99%). Additionally, the chemical variation of L. multifida specimens displayed little correlation with their bioclimatic or geographic location [13]. Table 4. Pearson’s correlation (p < 0.05) between environmental variables and Lavandula pubescens essential oil major component concentrations. Compounds Latitude Longitude Altitude Rainfall High Temp Low Temp Carvacrol 0.142 -0.063 0.275 -0.585 0.312 -0.580 Carvacrol methyl ether -0.147 -0.041 -0.383 0.662 -0.396 0.639 Caryophyllene oxide -0.144 -0.081 0.001 -0.175 0.031 -0.291 Terpinolene 0.045 0.213 -0.012 0.464 -0.142 0.588 m-Cymen-8-ol 0.112 -0.224 -0.150 0.015 -0.229 -0.137 β-Caryophyllene 0.506 -0.510 -0.348 -0.101 0.214 0.431 β-Bisabolene -0.658 0.453 0.139 0.320 -0.402 -0.116 β-Pinene -0.862a 0.342 -0.181 0.237 0.171 0.256 p-Cymen-8-ol -0.234 -0.001 -0.095 -0.245 0.366 0.022 (Z)-β-Ocimene -0.107 -0.072 -0.067 -0.171 0.435 -0.053 Myrcene -0.281 0.621 0.219 0.738a -0.644 0.239 a Correlation coefficient statistically significant at p < 0.05. 11 Conclusions Principal component analysis (PCA) and cluster analysis have allowed separation of the L. pubescens populations into two groups that are defined by minor components rather than major compounds, and therefore L. pubescens samples in this study represent a single chemotype. There are, however, no apparent correlations between the groups and their bioclimatic or geographical locations. Material and Methods Plant Material Eight specimens (aerial parts) of Lavandula pubescens Decne. were collected from different localities in Yemen during the period of October and November 2015. Each sample was collected from several plants at each collection site. The plant samples were taxonomically identified by the Botanist Dr. Hassan M. Ibrahim at the Botany Department, Faculty of Sciences, Sana’a University. A voucher specimen (YMPLam-4) has been deposited at the Pharmacognosy Department, Faculty of Pharmacy, University of Science and Technology, Yemen. Plant materials were air-dried in the shade for 10 days before hydrodistillation. The collection data are summarized in Table 1. Essential Oil Distillation Dried, crushed aerial parts (50 g each, four replicates) from eight samples of L. pubescens were hydrodistilled for 3 h in a Clevenger type apparatus according to the European Pharmacopoeia method [32]. The obtained oils were subsequently dried over anhydrous Na2SO4 and kept at 4°C until analysis. 12 Oil Composition Analysis The essential oils of L. pubescens were analyzed by GC-MS using an Agilent 6890 GC with Agilent 5973 mass selective detector (MSD) [operated in the EI mode (electron energy = 70 eV), scan range = 40 – 400 amu, and scan rate = 3.99 scans/sec], and an Agilent ChemStation data system. The GC column was an HP-5ms fused silica capillary with a (5% phenyl)-polymethylsiloxane stationary phase, film thickness of 0.25 μm, length of 30 m, and internal diameter of 0.25 mm. The carrier gas was helium with a column head pressure of 48.7 kPa and a flow rate of 1.0 mL/min. Injector temperature was 200ºC and detector temperature was 280ºC. The GC oven temperature program was used as follows: 40ºC initial temperature held for 10 min; increased at 3ºC/min to 200ºC; increased at 2ºC/min to 220 °C. A 0.2% w/v solution of the sample in CH2Cl2 was prepared and 1 μL was injected using a splitless injection technique. Identification of the oil components was based on their retention indices determined by reference to a homologous series of n-alkanes, and by comparison of their mass spectral fragmentation patterns with those reported in the literature [23] and stored on the MS library [NIST database (G1036A, D.01.00)/ChemStation data system (G1701CA, version C.00.01.080]. revision The percentages of each component are reported as raw percentages based on total ion current without standardization. Statistical Analysis Cluster analysis was used to classify and group the essential oils according to their main volatile constituents. 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