Table S3: Alternative tree topology tests
-ln L
KH test
SH test
best
20.85084
5.83844
4.25447
0.011*
0.577
0.720
0.009*
0.455
0.534
465010.03296
465040.97399
465017.83206
465025.70414
best
30.94103
7.79910
15.67119
0.002*
0.602
0.211
0.001*
0.432
0.168
465010.03296
465099.01739
465040.18350
465073.04533
465084.52363
465012.06899
465067.69901
465019.15674
465072.31325
465084.88888
465072.19636
465068.34300
465048.42966
465045.19217
465078.13005
465095.15364
best
88.98443
30.15055
63.01238
74.49067
2.03604
57.66605
9.12378
62.28029
74.85592
62.16340
58.31004
38.39670
35.15921
68.09710
85.12068
<0.000*
0.149
<0.000*
0.001*
0.819
0.003*
0.232
0.002*
<0.000*
0.003*
0.001*
0.072
0.108
0.001*
<0.000*
<0.000*
0.140
<0.000*
0.001*
0.843
0.001*
0.633
0.001*
<0.000*
0.001*
0.002*
0.059
0.084
0.001*
<0.000*
Alternative positions of Tarsiidae
((Anthropoidea,Tarsiidae),Strepsirrhini)
(Anthropoidea,Tarsiidae,Strepsirrhini)
(Anthropoidea,(Tarsiidae,Strepsirrhini))
((Anthropoidea,Strepsirrhini),Tarsiidae)
465010.03296
465030.88379
465015.87140
465014.28742
Alternative positions of Perodicticus
((Loris,Nycticebus),(Perodicticus,Galagidae))
((Loris,Nycticebus),Perodicticus,Galagidae)
(((Loris,Nycticebus),Galagidae),Perodicticus)
(((Loris,Nycticebus),Perodicticus),Galagidae)
Alternative relationships among Lemuriformes
(((Indriidae,Lepilemuridae),Lemuridae),Cheiroglaeidae)
(Indriidae,Lepilemuridae,Lemuridae,Cheiroglaeidae)
((Lemuridae,Indriidae),(Lepilemuridae,Cheiroglaeidae))
((Lemuridae,Cheiroglaeidae),(Indriidae,Lepilemuridae))
((Lemuridae,Lepilemuridae),(Indriidae,Cheirogaleidae))
(((Lemuridae,Indriidae),Lepilemuridae),Cheirogaleidae)
(((Lemuridae,Indriidae),Cheiroglaeidae),Lepilemuridae)
(((Lemuridae,Lepilemuridae),Indriidae),Cheirogaleidae)
(((Lemuridae,Lepilemuridae),Cheiroglaeidae),Indriidae)
(((Lemuridae,Cheiroglaeidae),Indriidae),Lepilemuridae)
(((Lemuridae,Cheiroglaeidae),Lepilemuridae),Indriidae)
(((Indriidae,Lepilemuridae),Cheirogaleidae),Lemuridae)
(((Cheirogaleidae,Lepilemuridae),Indriidae),Lemuridae)
(((Cheirogaleidae,Lepilemuridae),Lemuridae),Indriidae)
(((Indriidae,Cheiroglaeidae),Lepilemuridae),Lemuridae)
(((Indriidae,Cheiroglaeidae),Lemuridae),Lepilemuridae)
difference
Alternative positions of Aotidae
((Callithrichidae,Aotidae),Cebidae)
(Callithrichidae,Aotidae,Cebidae)
((Callithrichidae,Cebidae),Aotidae)
(Callithrichidae,(Cebidae,Aotidae))
465010.03296
465021.62947
465019.86769
465013.34901
best
11.59651
9.83473
3.31605
0.048*
0.108
0.660
0.046*
0.096
0.450
Alternative positions of Saguinus
((Callithrix,Cebuella),(Saguinus,Leontopithecus))
(((Callithrix,Cebuella),Saguinus),Leontopithecus)
((Callithrix,Cebuella),Saguinus,Leontopithecus)
(((Callithrix,Cebuella),Leontopithecus),Saguinus)
465006.85345
465010.03296
465031.43578
465020.20380
best
3.17951
24.5823
13.35036
0.796
0.002*
0.199
0.556
0.002*
0.173
Alternative positions of Mandrillus/Cercocebus
((Macaca,(Mandrillus,Cercocebus)),((Papio,Theropithecus),Lophocebus))
(Macaca,(Mandrillus,Cercocebus),((Papio,Theropithecus),Lophocebus))
(Macaca,((Mandrillus,Cercocebus),((Papio,Theropithecus),Lophocebus)))
((Mandrillus,Cercocebus),(Macaca,((Papio,Theropithecus),Lophocebus)))
465010.03296
465042.29678
465030.38899
465031.65135
best
32.26382
20.35603
21.61839
0.007*
0.134
0.097
0.006*
0.080
0.058
Alternative positions of Cercopithecus
((Erythrocebus,Cercopithecus),Chlorocebus)
(Erythrocebus,Cercopithecus,Chlorocebus)
((Chlorocebus,Cercopithecus),Erythrocebus)
((Chlorocebus,Erythrocebus),Cercopithecus)
465010.03296
465045.04022
465037.60442
465028.73099
best
35.00726
27.57146
18.69804
0.001*
0.022*
0.130
<0.000*
0.015*
0.068
465010.03296
465023.60218
465019.97838
465018.03249
best
13.56922
9.94542
7.99953
0.041*
0.198
0.342
0.029*
0.128
0.214
Alternative positions of Semnopithecus
((((Nasalis,Simias,Pygathrix),Rhinopithecus),Semnopithecus),(Trachypithecus,Presbytis))
(((Nasalis,Simias,Pygathrix),Rhinopithecus),Semnopithecus,(Trachypithecus,Presbytis))
((((Nasalis,Simias,Pygathrix),Rhinopithecus),(Trachypithecus,Presbytis)),Semnopithecus)
(((Nasalis,Simias,Pygathrix),Rhinopithecus),((Trachypithecus,Presbytis),Semnopithecus))
* P<0.05