Coevolutionary dynamics of polyandry and sex-linked meiotic drive Short title: Polyandry and selfish genetic elements Luke Holman1, Thomas A.R. Price2, Nina Wedell3 and Hanna Kokko1,4 [email protected] 1 Centre of Excellence in Biological Interactions, Division of Ecology, Evolution & Genetics, Research School of Biology, Australian National University, Canberra, ACT 0200, Australia. 2 Institute of Integrative Biology, University of Liverpool, Liverpool, L69 7ZB, UK. Biosciences, University of Exeter, Cornwall Campus, Penryn TR10 9FE, UK. 3 4 Institute of Evolutionary Biology and Environmental Sciences, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland Word count: 6267 in main text Keywords: Drosophila, extinction, meiotic drive, sex chromosome, t haplotype, sperm competition 1 2 Abstract 3 fixation and cause extinction via a shortage of one sex, but in nature they are 4 often found at low, stable frequencies. One potential resolution to this long- 5 standing puzzle involves female multiple mating (polyandry). Because many 6 meiotic drivers severely reduce the sperm competitive ability of their male 7 carriers, females are predicted to evolve more frequent polyandry and thereby 8 promote sperm competition when a meiotic driver invades. Consequently, the 9 driving chromosome’s relative fitness should decline, halting or reversing its 10 spread. We used formal modeling to show that this initially appealing hypothesis 11 cannot resolve the puzzle alone: other selective pressures (e.g. low fitness of 12 drive homozygotes) are required to establish a stable meiotic drive 13 polymorphism. However, polyandry and meiotic drive can strongly affect one 14 another’s frequency, and polyandrous populations may be resistant to the 15 invasion of rare drive mutants. Segregation distorters located on sex chromosomes are predicted to sweep to 16 17 Introduction 18 increase their representation in subsequent generations, often at the expense of 19 the fitness of the rest of the genome (Burt and Trivers 2006). They are 20 ubiquitous in living organisms, and the intragenomic conflicts they create have 21 major impacts on the evolution of sex, genetic systems, host ecology and 22 population dynamics (Hurst and Werren 2001; Burt and Trivers 2006; Charlat et 23 al. 2007a; Werren 2011; Wedell 2013). 24 Selfish genetic elements subvert normal patterns of DNA replication in ways that Segregation distorters, such as meiotic drivers, are selfish genetic 25 elements that manipulate gametogenesis and thereby enhance their 26 representation in the gametes relative to non-distorting elements (Burt and 27 Trivers 2006). This transmission advantage is expected to cause meiotic drivers 28 to rapidly go to fixation, assuming that drive-bearing and non-drive-bearing 29 individuals have equivalent survival and reproductive success (Ardlie 1998; Burt 30 and Trivers 2006). Several species possess meiotic drivers located on an X 31 chromosome, which is transmitted to up to 100% of the progeny of male carriers 32 (Beckenbach 1978; James and Jaenike 1990; Presgraves et al. 1997; Ardlie 1998; 33 Cazemajor et al. 2000; Hurst and Werren 2001; Charlat et al. 2007a; Werren 34 2011; Wedell 2013). These X-linked drivers can create strongly female biased 35 population-wide sex ratios (Jaenike 2001; Burt and Trivers 2006), potentially 36 causing extinction due to a shortage of males. Although putative population 37 crashes caused by meiotic drive have occasionally been reported (Pinzone and 38 Dyer 2013), meiotic drive has often been found in nature at stable, intermediate 39 frequencies over wide geographic areas and long periods of time (Dobzhansky 40 1958; Huang et al. 2001; Dyer 2012). What maintains polymorphisms for meiotic 41 drive (i.e. co-existence of driving and non-driving chromosomes or alleles) is 42 therefore a long-standing puzzle, as is the lower-than-expected frequency of 43 drive in some natural populations (e.g. Lewontin 1968; Charlesworth and Hartl 44 1978; Taylor and Jaenike 2002; Safronova and Chubykin 2013; Auclair et al. 45 2013). 46 Why don’t all meiotic drivers spread to fixation? Past attempts to explain 47 polymorphisms have mainly sought sources of negative frequency-dependent 48 selection on drive-carrying individuals. Under negative frequency-dependent 49 selection, a meiotic driver might spread when at low frequencies because of its 50 transmission advantage in segregation, and decline at high frequencies because 51 of the reduced fitness of its bearers. Low fitness of meiotic drive homozygotes is 52 one possible source of negative frequency-dependent selection, because drive 53 homozygotes increase in frequency as the driver becomes more common. 54 Accordingly, several meiotic drivers, including the t haplotype of mice (Ardlie 55 1998) and meiotic drive in some Drosophila (Dyer et al. 2007; Larracuente and 56 Presgraves 2012), cause sterility, death or milder deleterious effects in 57 homozygotes. These effects might arise because genomic regions near meiotic 58 drivers often undergo little or no recombination (Silver and Artzt 1981; Dyer et 59 al. 2007; Larracuente and Presgraves 2012), allowing the buildup of deleterious 60 genetic material at sites linked to the driver. However, meiotic drive 61 homozygotes appear to have comparable fitness in some systems (Powell 1997; 62 Price et al. 2012a). Costs to homozygotes are therefore likely to be only part of 63 the answer, especially since meiotic drive is often found at even lower 64 frequencies than predicted under homozygote lethality or sterility (the so-called 65 "t-paradox"; Lewontin 1968; Ardlie and Silver 1998; Manser et al. 2011). 66 Taylor and Jaenike (2002; 2003) modeled another solution, based on 67 observations that drive-carrying males experience an especially severe decline in 68 their ability to fertilize females and outcompete other males’ sperm after mating 69 a number of times (Wu 1983; Jaenike 1996; Price et al 2008a). This hypothesis is 70 appealing because there is abundant evidence that drive-carrying males are 71 disadvantaged in sperm competition relative to non-carrier males, often because 72 their Y-bearing sperm fail to develop (e.g. Wilkinson and Fry 2001; Atlan et al. 73 2004; Wilkinson et al. 2006; Angelard et al. 2008; Price and Wedell 2008; Price 74 et al. 2008a; Manser et al. 2011). Male mating rate is expected to increase as the 75 driving X (and hence females) becomes more common, so the comparatively 76 poor ability of drive-carrying males to fertilize multiple females might impose 77 negative frequency-dependent selection on meiotic drive. However, Taylor and 78 Jaenike (2002; 2003) also noted that sperm competition will generally become 79 less frequent as the sex ratio shifts towards females, because fewer females will 80 encounter multiple potential mates. This should impose positive frequency- 81 dependent selection on drive, because the growing rarity of female multiple 82 mating should increase the relative fitness of the driving X as it invades. Because 83 of these conflicting effects of population-wide sex ratio on drive males’ fitness, 84 polyandry only prevented the fixation of drive in a limited set of conditions in 85 Taylor 86 spermatogenesis in drive males is a general resolution to the current problem. and Jaenike’s model, making it unclear whether impaired 87 Recent data suggest another potential source of negative frequency- 88 dependent selection arising from sperm competition, which relies on female 89 evolutionary responses to the presence of drive-carrying males (Wedell 2013). 90 When drive males are disadvantaged in sperm competition, females can reduce 91 the proportion of their eggs that are fertilized by meiotic drive males by mating 92 with multiple males (Haig and Bergstrom 1995; Wilkinson and Fry 2001; Price et 93 al. 2010; Manser et al. 2011). An experimental evolution study found that 94 females indeed evolved higher frequencies of multiple mating when a meiotic 95 driver that negatively affects sperm competitive ability in male carriers was 96 introduced into the population (Price et al. 2008b). Moreover, geographical 97 clines in the frequency of X-linked meiotic drivers in North American 98 populations of Drosophila pseudoobscura and D. neotestacea correlate with the 99 local frequency of female multiple mating (Pinzone and Dyer 2013; Price et al. 100 2014). Together with abundant evidence that polyandry can rapidly respond to 101 selection (e.g. Harano and Miyatake 2007; Price et al. 2008b), this correlation is 102 consistent with coevolution between polyandry and meiotic drive in the wild. 103 It is not straightforward to assess whether coevolution between 104 polyandry and meiotic drive provides a sufficiently strong source of negative 105 frequency-dependent selection to prevent the fixation of meiotic drive. 106 Intuitively, as the meiotic driver increases in frequency in a population due to its 107 transmission advantage, females might evolve to be more polyandrous, causing 108 the driver to go into decline due to its disadvantage in sperm competition. As the 109 meiotic driver falls in frequency, females might evolve lower polyandry, since 110 multiple mating often has costs (e.g. Wigby and Chapman 2005) and therefore 111 should provide weaker net fitness returns when drive-bearing males are scarce. 112 Whether these coevolutionary dynamics are able to protect genetic 113 polymorphism for driving X chromosomes is difficult to predict without formal 114 modeling. To address these questions, we used genetically explicit models to 115 examine the potential for (and evolutionary consequences of) coevolution 116 between polyandry and driving X chromosomes. Model 1 is analytical and hence 117 can be investigated more thoroughly, but it makes several simplifying 118 assumptions. These assumptions are relaxed in Model 2, which is a stochastic 119 individual-based simulation. 120 121 Model 1: A deterministic simulation 122 determination and non-overlapping generations. The population contains non- 123 driving X chromosomes, driving X chromosomes and Y chromosomes, which we 124 denote X, X* and Y respectively. XY males have fair meiosis, but X*Y males 125 transmit an X* chromosome with probability (1 + d)/2 and a Y with probability (1 126 − d)/2. Therefore, d = 0 denotes even segregation of sex chromosomes in X*Y 127 males, and d = 1 complete meiotic drive (0 ≤ d ≤ 1). When d = 1, all eggs fertilized 128 by X*Y males develop into females. We consider a panmictic population composed of two sexes with XX/XY sex 129 To be able to derive analytical expressions for the evolving frequency of 130 polyandrous or monandrous females, we assume the simplest possible genetic 131 control of polyandry: a single, haploid autosomal locus with two alleles A and a. 132 We assume random mating, and that females mate either once or twice 133 depending on whether they carry allele A or a respectively. Males carry the A/a 134 locus but do not express it. Since there are two possible genotypes at the A/a 135 locus and five sex chromosomes genotypes (XX, X*X and X*X* females, plus XY 136 and X*Y males), the model must track ten genotypes. The assumption of 137 haploidy at the A/a locus is artificial but greatly simplifies the model, and is 138 unlikely to affect its qualitative conclusions; this assumption is relaxed in Model 139 2 below. 140 We further assume that polyandrous females (those carrying the A allele) 141 pay a fecundity cost such that their fecundity is multiplied by 1 – p, where 0 ≤ p ≤ 142 1. The parameter p represents the costs to females of mating multiply (e.g. due to 143 extra mate search costs or additional harm from contact with males). We also 144 implemented a fecundity cost h (0 ≤ h ≤ 1) to females with the genotype X*X*, in 145 order to investigate the joint evolutionary consequences of polyandry and 146 homozygote disadvantage. Females with the genotype aX*X* thus have fecundity 147 1 – h and those with the genotype AX*X* have fecundity (1 – p)(1 – h); that is, we 148 assume multiplicative fitness costs of polyandry and X* homozygosity. All other 149 female genotypes had a fecundity of 1 or 1 – p, depending on whether they 150 carried the a or A allele respectively. 151 Tracking offspring genotypes 152 For singly mating females, the expected frequency of each type of offspring can 153 be readily predicted from the parental genotypes, assuming random mating, 154 Mendelian segregation in females and XY males, and biased segregation in X*Y 155 males (when d > 0). For example, fertilizations of the eggs of an aXX female by an 156 AX*Y male produce aX*X and AX*X daughters with frequency (1 + d)/4 each, 157 and aXY and AXY sons with frequency (1 − d)/4 each. Other frequencies are 158 derived analogously. Our assumption of random mating follows the finding that 159 drive-carrying males often appear to have equivalent mating success (e.g. Price 160 and Wedell 2008; Price et al. 2012b). 161 The expected genotypes of the offspring of twice-mated females also 162 depend on the outcome of sperm competition. The frequency of a given type of 163 “mating trio” equals 2fm1m2, where f, m1 and m2 refer to the genotype frequencies 164 of the female and her two mates. We assume that males of different genotypes 165 are equally likely to mate in the first male or second male roles, meaning that 166 sperm precedence effects (Parker et al. 1990) are inconsequential for our model. 167 There are 3 polyandrous female genotypes and 4 male genotypes, so we must 168 track 30 possible mating trios. 169 Paternity is shared equally when both males are XY or both are X*Y. 170 However when one male is XY and the other is X*Y, the XY male sires a 171 proportion 1/(1 + c) of the offspring and the X*Y males sires the remaining c/(1 + 172 c). The parameter c (0 ≤ c ≤ 1) thus measures the relative competitiveness of X*Y 173 males in sperm competition (averaged across the first and last male roles): c = 0 174 means X*Y males gain no offspring if the female has also mated with an XY male, 175 and c = 1 means X*Y and XY males share paternity equally when they mate with 176 the same female. 177 Model 1 also assumes that monandrous females always mate once, and 178 polyandrous females always mate twice, irrespective of the population sex ratio. 179 Although potentially unrealistic, this assumption is important if Model 1 is to 180 exclude the sources of frequency dependent selection modeled by Taylor and 181 Jaenike (2002); this assumption is relaxed in Model 2. Because we assume no 182 sperm limitation and an invariant number of mates per female for all frequencies 183 of X*, any instances of X chromosome polymorphism in Model 1 must result from 184 distinct evolutionary processes to those previously studied. 185 Although the model yields analytical expressions for the frequencies of 186 each genotype from one generation to the next, the solutions are very complex. 187 We therefore determined equilibrium gene frequencies numerically, by 188 iteratively determining the predicted offspring genotype frequencies from the 189 parental ones given the model’s four global parameters: d, c, p and h. Each 190 generation, we normalized offspring genotype frequencies to sum to unity by 191 dividing them by the sum of the frequencies. The model therefore assumes a 192 large population in which genetic drift is negligible (again, this assumption is 193 relaxed in Model 2). 194 Note that although Model 1 does not include mate or sperm limitation (i.e. 195 all females were assumed to be fully fertile even when males were rare; this 196 assumption is removed in Model 2), the output of the model can be interpreted 197 such that parameter spaces that drastically reduce the frequency of males would 198 likely result in extinction in the real world. 199 200 Model 2: A stochastic simulation 201 inheritance at the polyandry locus, infinite population size (negating genetic 202 drift), discrete time, and that mating and fertilization occur just as efficiently 203 when males are scare. To relax these assumptions and verify the generality of 204 Model 1’s conclusions, we constructed an individual-based stochastic simulation 205 in continuous time, termed Model 2. Model 2 uses the Gillespie algorithm, which 206 allows us to model discrete stochastic events (e.g. matings, deaths) that occur at 207 different rates in continuous time, by considering the exponentially distributed 208 time it takes for a next event to occur, as well as events that occur after a fixed 209 time has elapsed (e.g. maturation). For details of the algorithm see Kokko and 210 Heubel (2011). The life cycle proceeds as follows. Model 1 has a number of limitations. For simplicity, it assumed haploid 211 Individuals carry two diploid loci: the A/a female mating behavior locus, 212 and sex chromosomes, which can be X, X* or Y. In half the simulations, we 213 assumed that the polyandry allele A is dominant; in the other half it was 214 recessive. Individuals begin life as pre-reproductive individuals (this includes 215 eggs and larvae), which become mature adults if they survive for 0.05 time units. 216 Adults of both sexes live for one time unit and then die. Pre-reproductive 217 individuals die in a density-dependent fashion: the rate of deaths in the pre- 218 reproductive population is (Ne)3/104 where Ne is the number of pre-reproductive 219 individuals. Density-dependent egg-to-adult survival thus limits population 220 growth in the model. 221 The mating rate of a female who is available to mate (i.e. is mature, but 222 has not yet reached her maximum number of matings) is mNm, where m is a 223 constant determining the mating rate and Nm is the number of males in the 224 population. Matings occur one at a time, and a female is immediately categorized 225 as no longer available to mate if she has reached her maximum number of 226 matings, which is one mating for aa females, two matings for AA females, and 227 either one or two for Aa females depending on the dominance of allele A. Note 228 that by “mating rate”, we always mean the rate at which matings occur, not the 229 total number of matings per female. 230 Males that have mated become sperm depleted, modeled by 231 instantaneously setting the focal male’s “sperm depletedness” (si) to one (s = 0 232 for virgin males). Sperm depletedness then declines exponentially towards zero 233 at rate r over time: thus if a non-virgin male mates, for example, 0.5613 time 234 units after his previous mating, his depletedness at the time of the new mating is 235 exp(–0.5613r). Note that a male is not less likely to mate if he has little sperm 236 available: we assume that males mate at every opportunity and that females 237 cannot discriminate among males with varying sperm stores. In order to exclude 238 the source of negative frequency-dependent selection proposed by Taylor and 239 Jaenike (2002; 2003) and limit the number of parameters in the model, we 240 assumed that the sperm replenishment rate was the same for XY and X*Y males. 241 Mated females lay all their eggs immediately before their death if they 242 acquired one or two matings during their lifetime, and unmated females die 243 without leaving offspring. Thus, when males are rare and/or m is low, many 244 potentially polyandrous females will mate only once before reproducing, and 245 females of any genotype may also die without mating at all. 246 The maximum possible number of eggs produced is f (f = 10 in all 247 simulations). In Model 2, three processes can reduce female fecundity from this 248 maximum value. First, f is multiplied by (1 – p) for females that mated twice (the 249 cost of polyandry), and second, by (1 – h) for X*X* females (the cost of 250 homozygous drive chromosomes; double-mated X*X* females pay both costs) 251 just as in Model 1. Third, female fecundity can fall lower still because of sperm 252 limitation. The fecundity of singly mated females depends on their mate’s sperm- 253 depletedness (si) at the time of mating. Fecundity is multiplied by (1 – si)k, where 254 k is a constant governing the shape of the relationship between fecundity and the 255 amount of sperm received. The fecundity of doubly-mated females is multiplied 256 by either (1 – s1)k + (1 – s2)k (where the subscripts refer to the first and second 257 mate), or 1, whichever is lower. That is, we assume that a female mating with one 258 virgin male reproduces at her own maximum possible fecundity (which depends 259 on her genotype, p and h), but that females who obtain even more sperm than 260 that of a virgin male by mating twice can equal but not exceed their maximum 261 fecundity. We assume k = 5 in all simulations, meaning that additional sperm is 262 especially valuable to females whose first mate was strongly sperm depleted. 263 The paternity of eggs laid by doubly mated females depends on sperm 264 competition. When both males are XY or both are X*Y, the focal male has a 265 paternity probability of si/(si + sj); that is, we assume that sperm-depleted males 266 are worse in sperm competition. This formula is modified to csi/(csi + sj) if the 267 focal male is X*Y and the other XY, or si/(si + csj) if the focal male is XY and the 268 other X*Y. The genotypes of the eggs produced are decided by Mendelian 269 segregation, and eggs become adults 0.05 time units after being laid if they 270 survive pre-reproductive density-dependent mortality. Note that although Model 271 2 could incorporate non-overlapping generations, in practice generations were 272 discrete because we initiated the population with adults only, all of which laid 273 eggs and died at the same time. Therefore, adults did not mate with their own 274 offspring. 275 Simulations were initialized with the polyandry allele at 50% frequency 276 and the X* chromosome at either 10% or 90% frequency (allowing us to 277 estimate its likely evolutionary endpoint in parameter spaces where evolution 278 was very slow; see Results and Figure S8). We ran the simulation until the 279 population went extinct, or until a total of 100,000 eggs had been produced (10 280 replicates per parameter space for a total of 17,280 runs). 281 Results of Model 1 282 X* has trouble spreading in a fully polyandrous population 283 First, we investigated whether polyandry can prevent X* from invading when all 284 females in the population are polyandrous and when there are no costs to X* 285 homozygotes (h = 0). Note also that if we had assumed that polyandry confers a 286 net direct benefit (p < 0) in Model 1 rather than a cost, the polyandry allele 287 would always increase and fix, resulting in a uniformly polyandrous population. 288 In a population where all females mate twice, an analytical approximation exists 289 that permits simpler solutions than the general case, provided that we assume 290 X* is rare (see Online Supplementary Material). In short, a rare X* mutant can 291 invade and go to fixation in a population in which all females mate twice 292 provided that c > 1/(1+2d) (Figure 1), i.e. when drive males are sufficiently 293 successful in sperm competition relative to the strength of meiotic drive. 294 However, this analytical approximation does not accurately predict the 295 fixation criteria for drive mutants that have managed to become fairly common, 296 for example via genetic drift or a large influx of migrants carrying X*. Because 297 the complete analytical model is complex, we numerically investigated whether 298 X* was fixed or lost when the population was initiated with a range of X* initial 299 frequencies between 0.01 and 0.99, for a range of values of c and d (Figure 1). We 300 thereby found the minimum initial frequency of X* required for invasion, which 301 predicts the degree to which polyandrous populations are protected against X* 302 (note that X* can invade a monandrous population from any non-zero initial 303 frequency assuming h = 0 and d > 0 in Model 1). 304 Figure 1 shows that polyandry causes X* to decline from all starting 305 frequencies if X*Y males are sufficiently disadvantaged in sperm competition 306 relative to the strength of meiotic drive. Therefore, polyandry creates selection 307 against meiotic drivers that reduce the bearer’s sperm competitive ability. 308 However, when c was sufficiently high relative to d, X* went to fixation from all 309 starting frequencies. The boundary between the zones of inevitable fixation or 310 inevitable loss of X* was separated by a zone in which the initial frequency of X* 311 determined its fate. This zone was especially large when c was low, i.e. when 312 drive males do not fare well in sperm competition. This result illustrates that 313 fixed levels of polyandry produce positive frequency-dependent selection on X* 314 when carriers are disadvantaged in sperm competition. As X* becomes more 315 common, sperm competition involving only X*Y males becomes increasingly 316 frequent, so the X* chromosome suffers its sperm competition disadvantage less 317 often. 318 Polyandry alone cannot maintain genetic variation for meiotic drive 319 We next examined whether freely evolving polyandry can maintain 320 polymorphism for meiotic drive, assuming that polyandry has a direct cost p to 321 females (assuming p = 0 generally causes polyandry to fix, simplifying the model 322 to the case in Figure 1). Figure 2 illustrates three contrasting simulation 323 outcomes. In Figure 2A (which assumes no costs to X*X* homozygotes), the 324 meiotic driver went to fixation despite an increase in the frequency of polyandry 325 as X* increased in frequency, leading to the extinction of males. In Figure 2B, we 326 assumed strong costs to X*X* homozygotes, which prevented X* from going to 327 fixation, and also selected for polyandry. The presence of X* resulted in a 328 moderately female-biased sex ratio. Lastly in Figure 2C, X* and the polyandry 329 allele oscillate in frequency, because the frequency of each determines the fitness 330 of the other. 331 We then set p = 0.01 and varied h, d and c, to determine the effects of the 332 latter parameters on the evolutionary outcome. Each run of the model began 333 with a population in which the sex ratio was even, alleles A and a had 334 frequencies of 0.5, X* had frequency 0.001, and A and X* were in linkage 335 equilibrium. Simulations were terminated after 105 generations, and we present 336 the average allele frequencies in the last 10,000 generations (thereby finding the 337 value around which allele frequencies oscillated, in cases where allele 338 frequencies were not stable). 339 Figure 3 shows that when h = 0 (i.e. X*X* homozygotes had normal 340 fitness), X* typically went to fixation. However for other values of h, 341 polymorphism for drive was possible, with higher h resulting in lower 342 frequencies of X*. As expected, strong meiotic drive (d) and high competitiveness 343 of drive male sperm (c) generally had a positive effect on the frequency of X*. 344 However, co-evolution between meiotic drive and the polyandry allele (Figure 4) 345 resulted in a complex picture. For example, one might expect low c to favor the 346 evolution of polyandry, since this condition increases the difference in the 347 proportion of sons produced by polyandrous and monandrous females, all else 348 equal. However, low c also causes X* to be less common, which favors monandry 349 (since polyandry is costly, and females rarely benefit from screening out X* 350 sperm when X* is rare). Consequently, polyandry was especially strongly 351 selected for when drive males were bad, but not too bad, in sperm competition (c 352 = 0.3-0.7; i.e. close to many real-world estimates of drive males’ sperm 353 competitive ability; Price and Wedell 2008; Price et al. 2008a). These higher 354 rates of polyandry tended to depress the frequency of X*. 355 An important result of Model 1 is that we found no evidence that co- 356 evolving polyandry alone is sufficient to maintain genetic polymorphism for 357 drive, because X* always either went to fixation or went extinct assuming h = 0. 358 To confirm that this result was not specific to the limited parameter space 359 chosen for Figures 2 and 3, we searched for parameter values that allowed X* 360 polymorphism to persist by randomly generating 40,000 parameter spaces in 361 which h, d and c varied independently between 0 and 1, and p varied between 0 362 and 0.2 (initial tests showed that higher p always drove allele A to extinction). 363 Simulations were terminated after 105 generations, or when X* reached a 364 frequency of >0.99, and we again recorded average allele frequencies in the last 365 10,000 generations. 366 Figures S1 and S2 show the effect of the model’s four parameters on the 367 frequency of X* and polyandry respectively. Figure S1 confirms that 368 polymorphism for X* never occurred when h was close to 0 (we additionally ran 369 10,000 other random parameter spaces all with h = 0 which confirmed this 370 result; not shown), and Figure S2 illustrates that costly polyandry is not selected 371 for if meiotic drive is too weak (low d) or if the costs of polyandry are too high 372 (high p). Figure S3 shows the effects of effects of the four parameters on the 373 range of the frequency of X* in the last 10,000 generations, showing which 374 parameters values can generate cycling allele frequencies as shown in Figure 2C. 375 Figure S3 suggests that cycles occur when h, c and p are low and d is high. That is, 376 cycling is more likely when X* can quickly spread from low frequencies (high d), 377 and polyandry can rapidly evolve and effectively cause its spread to reverse (low 378 c and p). 379 Finally, the model found some evidence that when polymorphism for 380 meiotic drive persists, the frequency of drive tends to be negatively correlated 381 with the frequency of polyandry. Figure S4 shows the final frequencies of X* and 382 the polyandry allele for the 40,000 randomly generated parameter spaces shown 383 in Figures S1 and S2. The regression line shows the linear relationship for those 384 parameter spaces for which polyandry and X* had a final mean frequency 385 between 0.01 and 0.09, and the frequency of males was greater than 1%. 386 Although variable values of the model’s four parameters created abundant 387 scatter, there was a net negative relationship, likely because polyandry reduces 388 the selective of advantage of X* whenever X* is disadvantaged in sperm 389 competition. 390 391 Results of Model 2 392 Figures S5-S8. Most of the conclusions are qualitatively identical to Model 1. 393 Strong costs of polyandry (p) disfavored the polyandry allele, allowing X* to 394 spread more readily, and increasing the probability of extinction. The X* 395 chromosome spread more easily if X*Y males were not disadvantaged in sperm 396 competition (c) because more eggs were then fertilized by X*Y males, and 397 probably also because polyandry was not as common when c was high. 398 Accordingly, high c also increased extinction risk. Strong meiotic drive (d) greatly 399 increased extinction probability, and had positive effects on X* and polyandry 400 frequency. The results of Model 2 are summarized in Table 1 and shown graphically in 401 Costs to X*X* homozygotes (h) again hindered the spread and fixation of 402 X*, reducing the risk of extinction. Importantly, just as in Model 1 we found no 403 evidence that polyandry alone can selectively maintain X* polymorphism: 404 evidence of stabilizing selection on X* was only found when X*X* homozygotes 405 paid a fitness cost (h > 0). Specifically, there were no parameter spaces with h = 0 406 in which X* commonly increased from 10% and decreased from 90% initial 407 frequency (Figure S8). 408 The new parameter r, which controlled the rate at which mated males 409 replenished their sperm, had a strong negative effect on extinction probability. 410 This result is expected because when males can rapidly replenish their sperm, 411 female fecundity is less affected by a shortage of males. When r was low, 412 polyandry reached higher frequencies, because females derived more benefit 413 from the extra sperm gained by mating twice when their first mate was more 414 often sperm depleted. Likely as a consequence of its negative effect on polyandry 415 frequency, r positively affected the frequency of X*. 416 The other new parameter m, which scales the probability that an available 417 female mates at any given male density, had a positive effect on the evolution of 418 polyandry. This result is intuitive because with low m, comparatively few females 419 carrying one or two A alleles actually mated twice before reproducing, 420 diminishing the fitness difference between alleles A and a and thus weakening 421 selection on polyandry. Accordingly, the evolution of allele A was relatively 422 variable when m was low, suggesting drift was strong relative to selection 423 (bottom left, Figure S6). Because multiple mating causes sperm competition, high 424 m was associated with somewhat lower frequencies of X*. Interestingly, higher 425 mating rates were associated with more extinction despite resulting in lower 426 frequencies of X*. This counterintuitive relationship becomes explicable once 427 one notes that all else being equal, the average male is more sperm-depleted 428 when m is high, and females can therefore remain sperm limited even if they hit 429 their mating quota (1 or 2 matings, depending on genotype). The problem of 430 sperm limitation is exacerbated because it selects for polyandry, making sperm 431 even scarcer (for an analogous argument in a different system see Charlat et al. 432 2007b). 433 X* tended to be less common when the polyandry allele A was dominant 434 than when it was recessive, presumably because dominance increases the 435 number of females who mate twice for any given A frequency. As a likely 436 consequence, the polyandry allele reached lower frequencies when it was 437 dominant. The effect of allele A’s dominance on extinction probability was small 438 and inconsistent. 439 As in Model 1, the frequency of the polyandry allele negatively predicted 440 the frequency of X* across all non-extinct simulation runs (slope±95% 441 confidence limits: -0.18±0.02; intercept = 0.52±0.02, n = 8409). However, the 442 explanatory effect of polyandry was very weak (R2 = 0.023), reflecting the 443 plethora of interacting predictors affecting both frequencies. 444 445 Discussion 446 provided sufficiently strong negative frequency-dependent selection to maintain 447 polymorphism for an X-linked meiotic drive gene under the present 448 assumptions. However, when the X* chromosome was prevented from reaching 449 fixation by costs to X*X* homozygotes, polyandry had substantial effects on the 450 frequency and evolutionary dynamics of X*. Polyandry was also sometimes able 451 to purge X* if X*Y males were disadvantaged in sperm competition. 452 Why didn’t polyandry allow stable polymorphism of the driving X? 453 This result likely stems from variation in the strength and direction of selection 454 on polyandry at different stages of the invasion of the X* chromosome. For any 455 given sex ratio, selection for polyandry is strongest when X and X* are present in 456 exactly equal frequencies in males, because this condition maximizes the chance 457 that polyandrous females will mate with both XY and X*Y males. Therefore, the 458 reduction in the average number of X*-bearing offspring produced by Contrary to our predictions, we found no evidence that co-evolving polyandry 459 polyandrous females relative to monandrous ones is also maximized. By 460 contrast, when the frequency of X* is close to 0 or 1, polyandry provides weaker 461 benefits (again, for any given sex ratio) because females will usually mate with 462 multiple males of the same type. Selection for polyandry will also tend to be 463 strong at high frequencies of X* relative to lower X* frequencies that are 464 similarly far from 0.5 (e.g. at 0.75 relative to 0.25). This is because higher X* 465 frequencies tend to be associated with a more female-biased population-wide 466 sex ratio; the extra sons produced by polyandrous females therefore tend to have 467 higher reproductive value (Fisher 1930) when X* is common. 468 Together, these effects mean that the “extra-son” benefits to polyandrous 469 females will remain small until partway through the invasion of the X* 470 chromosome. Although polyandrous females get increasingly more benefits as X* 471 begins to invade, these benefits might start to decline sometime after X* has 472 passed 50% frequency, since polyandrous females then more often fail to also 473 mate with an XY male (this is especially true if the declining abundance of males 474 causes females to mate with fewer males, as in Model 2 and Taylor and Jaenike 475 2002; 2003). Given that meiotic drivers can spread very quickly, polyandry will 476 often fail to evolve rapidly enough to reach a sufficiently high level to stop or 477 reverse the spread of X*, assuming that negative frequency-dependent selection 478 on X* from other factors (e.g. a cost to X*X* homozygotes) does not stop or slow 479 its spread. This was true even in Model 2, which introduced an additional benefit 480 to polyandry (extra sperm) that grew more valuable as males became rare. 481 In short, polyandry needs to be present at high frequencies to stop the 482 spread of X*. A growing invasion of X* does not generate enough selection on 483 polyandry to boost polyandry to high enough frequencies to stop the invasion, 484 and thus unexplained incidences of meiotic drive polymorphism in the wild (see 485 Introduction) are unlikely to be explained solely by co-evolution with polyandry. 486 Polyandry can purge meiotic drive, and influences drive frequency when 487 other factors maintain polymorphism 488 Although polyandry alone could not protect the X chromosome polymorphism, 489 we found that populations with a high frequency of polyandry are resistant to 490 invasion by X-linked meiotic drivers (and sometimes even purge them from 491 some high initial frequency, such as might occur following an immigration 492 event), provided that drive-carrying males are disadvantaged in sperm 493 competition. This result is similar to that of a previous model of cytoplasmic 494 incompatibility-inducing (CI) Wolbachia. Champion de Crespigny et al. (2008) 495 showed that if CI-inducing Wolbachia harm the sperm competitive ability of male 496 carriers, Wolbachia can be prevented from invading from low initial frequencies. 497 As in our model and those of Taylor and Jaenike (2002; 2003), polyandry can 498 generate positive frequency-dependent selection on Wolbachia: once the 499 bacterium becomes sufficiently common, Wolbachia-carrying males tend to 500 compete against each other, reducing the importance of selection from their 501 inferior sperm competitive ability against uninfected males (Champion de 502 Crespigny et al. 2008). This suggests that our other results generalize to other 503 kinds of selfish genetic element: for example, it is likely that coevolution between 504 polyandry and Wolbachia prevalence cannot explain puzzling polymorphisms for 505 Wolbachia infection under complete maternal transmission or complete CI. 506 We also found that when costs to X*X* females prevented X* from fixing, 507 costly polyandry was often selectively maintained because it provided benefits in 508 terms of extra sons (which is beneficial in a population containing X*). In these 509 situations, the equilibrium mean frequency of polyandry predicted that of X*. In 510 some cases, polyandry remained at a stable frequency, while in others, polyandry 511 and X* tracked each other in stable cycles. Similar cycles have been found in 512 other models of meiotic drive and drive suppressors (Charlesworth and Hartl 513 1978; Hall 2004), and of Wolbachia causing cytoplasmic incompatibility (Hurst 514 and McVean 1996). Additionally, correlations between polyandry and drive 515 frequency were found in previous models of CI-inducing Wolbachia (Champion 516 de Crespigny et al. 2008) and the mouse t haplotype (Manser et al. 2011), both of 517 which assumed that males carrying segregation distorters were disadvantaged 518 in sperm competition as in our model. Available theoretical work therefore 519 suggests that observed correlations between polyandry and meiotic drive in 520 natural populations (Pinzone and Dyer 2013; Price et al. 2014) may result from a 521 combination of adaptation in female mating behavior to the local frequency of 522 drive males and negative effects of polyandry on drive allele fitness. 523 What other factors might stabilize meiotic drive? 524 Given that polyandry and sperm competition appear unlikely to be the full story, 525 what other factors might be acting to stabilize meiotic drive frequencies in 526 natural populations? 527 One possibility is that meiotic drivers are strongly affected by the 528 environment, and that seasonal reductions in drive efficacy and/or the fitness of 529 carriers reduce drive frequency to such an extent that drivers cannot spread to 530 fixation over the course of a year. Laboratory estimates of segregation distortion 531 and fitness of carriers may overestimate the selective advantage of meiotic drive, 532 if these parameters are impaired in less benign environments (Feder et al. 1999). 533 Consistent with an effect of climate on the strength of segregation distortion or 534 the relative fitness of drive-bearing individuals, several meiotic drivers appear to 535 be distributed in latitudinal clines, being rarer at high latitudes (Krimbas 1993; 536 Powell 1997; Dyer 2012; Price et al. 2014). This correlation implies that meiotic 537 drive carriers might have reduced survival, fecundity, fertility, mating success 538 and/or drive efficacy in colder climates. However, direct evidence for decreased 539 drive efficacy or fitness of drive-carrying individuals in cooler environments 540 appears to be absent. D. pseudoobscura males carrying a driving X chromosome 541 have impaired fertility at high temperatures (Price et al. 2012a), but this finding 542 cannot explain the observed latitudinal cline because the driving X is commoner 543 at warmer latitudes (Price et al. 2014). Wallace (1948) found that D. 544 pseudoobscura females homozygous for drive had reduced larval survival, 545 especially at high temperatures, but again this result predicts the opposite 546 latitudinal cline to that which is observed in nature. 547 Lastly, meiotic drivers might persist in metapopulations, where the drive 548 chromosomes can spread within patches and cause local extinctions. 549 Polymorphism might be maintained at the metapopulation level because patches 550 containing the driver produce fewer migrants, e.g. because females in these 551 patches are more often sperm limited (Taylor and Jaenike 2002; cf. Kokko et al. 552 2008). However, evidence for local extinctions caused by meiotic drive in natural 553 populations is equivocal (Pinzone and Dyer 2013). 554 Conclusions 555 Our models tested whether coevolution with polyandry could provide a 556 sufficiently strong source of negative frequency-dependent selection to prevent 557 the fixation of an X-linked meiotic drive gene that also reduces the sperm 558 competitive ability of male carriers. Although polyandry often became more 559 common after the meiotic driver began to spread, reducing the driver’s relative 560 fitness, co-evolving polyandry was never sufficient to prevent the driver from 561 continuing to spread to fixation. However, when we additionally assumed that 562 meiotic drive homozygotes had low fitness, preventing drive fixation, polyandry 563 often had large effects on the frequency and evolutionary dynamics of meiotic 564 drive. 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Parameter Effect on X* frequency Drive strength (d) Polyandry cost (p) Competitiveness of X*Y sperm (c) Cost to X*X* females (h) Mating rate (m) Sperm replenishment rate (r) Dominance of polyandry allele 707 Positive Positive Positive Effect on polyandry frequency Positive Negative Negative Effect on extinction probability Positive Positive Positive Negative Inconsistent Negative Negative, up to a point Positive Positive, up to a point Negative Inconsistent Negative Negative Negligible Negative 708 Figure legends 709 710 711 Figure 1: In a 100% polyandrous population, the invasion of meiotic drive is difficult or impossible if X*Y males are sufficiently disadvantaged in sperm competition, especially when meiotic drive is weak. 712 The color shows the minimum initial frequency of X* required for X* to invade 713 for each combination of c and d. Darker colors indicate that X* can invade even 714 from a low initial frequency, while white areas indicate that X* would decline 715 from any initial frequency less than one (i.e. a population fixed for X* is invasible 716 by X). Intermediate color shows regions in which X* can invade, but only if it 717 exceeds a certain initial frequency. The line shows the approximate threshold at 718 which X* can invade from any non-zero initial frequency (see Online 719 Supplementary Material). These results assume that all females mate with two 720 males, and h = 0. 721 722 723 Figure 2: Three contrasting simulation runs, respectively showing fixation of X*, stable polymorphism, and cyclic polymorphism. 724 In Figure 2A, X* invades from low frequency and goes to fixation, causing 725 extinction of males; the polyandry allele also began to (temporarily) increase in 726 frequency as X* became common, but X* nevertheless continued to fixation. In 727 2B, strong costs to X*X* homozygotes prevented X* from fixing, and the 728 subsequent increase in the frequency of polyandry affected the equilibrium 729 frequency of X*. Lastly in 2C, stable co-evolutionary cycles of polyandry and X* 730 occurred. We assumed d = 0.9 and starting frequencies of 0.5 for polyandry and 731 0.001 for X* in all simulation runs. 732 733 Figure 3: The effect of the parameters c, d, and h on the frequency of X*. 734 When X*X* homozygotes paid no fitness cost (h = 0), X* fixed for all values of c 735 (assuming d > 0), indicating that co-evolving rates of polyandry alone cannot 736 stop a meiotic driver from invading and fixing. By contrast when h = 0.2, X* only 737 fixed when it did not seriously impact its bearer’s sperm competitive ability and 738 meiotic drive was strong; otherwise, X* remained polymorphic. Higher values of 739 h yielded a similar picture, but X* reached lower frequencies due to the reduced 740 fitness of X*X* homozygotes. Grey areas indicate parameter spaces in which the 741 frequency of males dropped below 1%, suggesting that these parameter 742 combinations would lead to extinction in reality. We assumed p = 0.01 and 743 starting frequencies of 0.5 for polyandry and 0.001 for X* in all simulation runs. 744 745 746 Figure 4: The effect of the parameters c, d, and h on the frequency of polyandry. 747 Polyandry was always lost when h = 0, since X* always went to fixation, meaning 748 there were no XY males to favor using sperm competition. For other h values, 749 polyandry became most common when c was intermediate and d was high. 750 Intermediate h favored polyandry more than high h, since X* was present at 751 lower frequencies if h was high. Grey areas indicate parameter spaces in which 752 the frequency of males dropped below 1%, suggesting that these parameter 753 combinations would lead to extinction in reality. We assumed p = 0.01 and 754 starting frequencies of 0.5 for polyandry and 0.001 for X* in all simulation runs. 755 Online supplementary material 756 757 Analytical approximation when h = 0 and X* is rare: polyandry can prevent the invasion of X* 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 Here we consider a simplified case of Model 1, in which all females mate with two males (i.e. allele A is fixed), X*X* females have normal fecundity (i.e. h = 0), and X* is rare. As in the main model, XY and X*Y males fertilize a fraction of the eggs 1/(1 + c) and c/(1 + c), respectively, when they mate with the same female. Again, X*Y males transmit an X* chromosome to a fraction (1 + d)/2 of their offspring, and a Y chromosome to the remaining (1 – d)/2. The X* chromosome has an initial frequency of q, where q ≈ 0. The frequencies of matings involving more than one individual carrying an X* chromosome, and the frequency of X*X* females, are therefore negligible and can be ignored when calculating the invasion condition for X*. We therefore have to consider just three mating types: 1) an XX female mating with two XY males, 2) an XX female mating with an XY male and an X*Y male, and 3) an X*X female mating with two XY males. The frequencies of these mating types are (1 – q)3, 2q(1 – q)2, and q, respectively, which sum to 1–q2+q3 ≈ 1, since q ≈ 0. We can then calculate the frequencies of each of the four possible types of offspring in the next generation given the values of c and d by summing the columns of Table S1. The frequency of X* in the next generation, q’, is approximately equal to the sum of the frequencies of X*Y and X*X individuals in the offspring cohort, which can be found by multiplying the above mating type frequencies by the frequencies with which they produce X*Y and X*X offspring (Table S1). After simplifying and ignoring higher order terms of q, which are negligible when q is small, we find that q’ > q approximately when c > 1/(1 + 2d). This threshold is plotted on Figure 1. 781 Supplementary table 782 783 784 785 Table S1: Frequencies of each type of offspring produced when X* has frequency q, c scales the competitiveness of X*Y males in sperm competition, and d is the strength of meiotic drive. Frequency of each offspring type 786 Mating type XX XY X*X X*Y XX × XY × XY (1–q)3/2 (1–p)3/2 0 0 𝑐 1+d } 2 + 2𝑐 2 0 XX × X*Y × XY 2𝑞(1 − 𝑞)2 ( X*X × XY × XY q/4 1 ) 2 + 2𝑐 2q(1– q)2 { 1 c 1−d + } 2 + 2c 2 + 2c 2 q/4 2𝑞(1 − 𝑞)2 { q/4 q/4 787 Supplementary figure legends 788 789 Figure S1: The cost of X*X* homozygosity (h) define whether X* polymorphism can persist. 790 791 792 793 794 795 796 797 The plot shows the frequency of X* for individual model runs (averaged over the final 10,000 generations, except when simulations were terminated because X* reached 0.99 frequency, in which case 0.99 is shown; total: 40,000), paneled by the model’s four parameters. Areas empty of points imply that X* never reached a particular final frequency when the parameter takes the value indicated on the x axis. For example, h = 0 did not allow polymorphism for meiotic drive, and X* never reached high frequencies when h was high. We assumed starting frequencies of 0.5 for polyandry and 0.001 for X* in all simulation runs. 798 799 800 Figure S2: The effects of the model’s parameters on the frequency of polyandry. 801 802 803 804 805 806 807 808 809 The plot shows the frequency of allele A for individual model runs (averaged over the final 10,000 generations, except when simulations were terminated because X* reached 0.99 frequency, in which case the frequency of allele A at termination was used; total: 40,000), paneled by the model’s four parameters. Areas empty of points imply that allele A cannot evolve to a particular frequency when the parameter takes that value. For example, polyandry never increased from its initial frequency of 0.5 when meiotic drive was weak or the costs of polyandry were large. We assumed starting frequencies of 0.5 for polyandry and 0.001 for X* in all simulation runs. 810 811 812 Figure S3: The effects of the model’s parameters on the range of X* frequencies in the last 10,000 generations. 813 814 815 816 817 818 819 The plot shows the difference between the maximum and minimum frequencies of X* observed in the last 10% of generations, for those simulations that ran for the full 105 generations without being terminated due to X* fixation. Areas with a non-zero range in frequencies displayed co-evolutionary cycles of the kind shown in Figure 2C. Cycles were only observed for intermediate h, low c, high d and low p. We assumed starting frequencies of 0.5 for polyandry and 0.001 for X* in all simulation runs. 820 821 822 823 824 825 826 827 828 Figure S4: There was a negative relationship between the frequency of polyandry and X*. The red line and its grey 95% confidence intervals are from a linear regression of polyandry on X* frequency across the 3472 simulation runs in which both polyandry and X* had a final frequency in the range 0.01-0.99, and there were at 1% males. These runs are shown by black dots; grey dots mark the remaining 36528 simulation runs (not used to calculate the regression line). The points were randomly jittered to reduce over-plotting. 829 Figure S5: Effect of Model 2’s parameters on the final frequency of X*. 830 831 832 833 834 835 836 837 838 839 840 The points show means and their 95% confidence limits; red points show data from runs in which the A allele was dominant, while blue points denote recessivity of A. The semi-transparent points show individual simulation outcomes. Runs that ended with extinction are not shown, and were not used to calculate the means. The simulation runs covered every permutation of the following parameter lists, and each parameter combination was replicated 10 times: Initial frequency of X* = 10% and 90%; Allele A dominant or recessive; h = 0, 0.2 or 0.99; p = 0, 0.05, 0.2 and 0.6; d = 0.5 and 1; r = 0.1, 1 and 10; m = 0.1, 1 and 10; c = 0.1 and 0.9. There were thus 10 replicate runs of each of 1728 parameter spaces (8409 simulations did not go extinct, and are thus plotted here). 841 842 843 Figure S6: Effect of Model 2’s parameters on the final frequency of the polyandry allele. 844 845 846 847 848 849 The points show means and their 95% confidence limits; red points show data from runs in which the A allele was dominant, while blue points denote recessivity of A. The semi-transparent points show individual simulation outcomes. Runs that ended with extinction are not shown, and were not used to calculate the means. The data are from the same simulations as those shown in Figure S1. 850 851 Figure S7: Effect of Model 2’s parameters on extinction probability. 852 853 854 855 856 857 858 Extinction probability was estimated as the proportion of the 10 replicate simulation runs per parameter space that went extinct. The points show mean extinction probabilities and their 95% confidence limits; red points show data from runs in which the A allele was dominant, while blue points denote recessivity of A. The semi-transparent points show extinction probabilities for individual parameter spaces. The data are from the parameter space described in the legend of Figure S1. 859 860 861 Figure S8: Effect of Model 2’s parameters on the frequency of four possible evolutionary outcomes for X*. 862 863 864 865 866 867 868 869 870 This plot considers four possible evolutionary trajectories for X*. First, X* could increase from both 10% and 90% initial frequencies for a given parameter space, implying that those conditions allow X* to invade when rare and proceed to fixation (red). Second, X* could increase from 90% initial frequency but decline from 10%, suggesting that it can fix but only if present at a sufficiently high initial frequency (green). Third, X* could increase from 10% and decrease from 90%, implying that selection moves X* to some intermediate frequency (blue). Finally, X* could decline from both 10% and 90% frequencies (purple). The frequency of each of these four outcomes was determined for each of the 864 871 872 873 874 875 876 877 878 879 880 881 882 883 parameter spaces shown in Figures S5-S7 by multiplying the proportion of replicates in which the frequency of X* changed in the predicted direction in the 10% runs by the frequency of X* changed in the predicted direction in the 90% runs. For example, if X* increased from an initial frequency of 10% and declined from 90% in 2/10 and 6/10 replicate simulations respectively, the blue outcome was assigned a probability of 0.2×0.6=0.12 for that parameter space (the points show the average probability and its 95% confidence limits). A key result to note is that there was no evidence for stabilizing selection on X* when homozygotes pay no costs, which is shown by the third, blue outcome having a probability of zero when h = 0. Thus, Model 2 reaffirms a major conclusion of Model 1, namely that co-evolving rates of polyandry cannot selectively maintain variation for meiotic drive under the present assumptions. Nevertheless, polyandry is important to the evolution of X* whenever c < 1.
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