SOL Review Packet ________ Name_________key_________________________ Block I. Scientific Investigation A. Parts of Experimental Design: Match the word bank to the correct definitions Constants Experiment Variables Dependent Variable Qualitative data Quantitative data Independent variable Hypothesis Control Mean 1. _Qualitative Data_____________- is the type of data gathered using the 5 senses. 2. _Quantitative Data___________- is the type of data gathered using actual measured numbers. 3. _Hypothesis_________________- is an educated guess/prediction; usually in “IF...THEN” form. 4. _Variables__________________- any factors that can be changed in an experiment. 5. _Independent Variable_______- is the variable that you purposely change...variable “I” change. 6. _Dependent Variable_________- is the variable that changes as a result of changing the IV. 7. _Control_________________- is the standard against which the experimental results are compared. 8. _Constants_________________- the thing(s) that are purposely kept the same in the experiment. 9. _Experiment_______________- is a structured way to test a hypothesis 10. _Mean____________________- the average of the data collected in an experiment B. Steps of Scientific Method Place the following steps of the Scientific Method in chronological order: __6_____Communicate your results __3_____Construct a hypothesis __5_____Analyze data and draw conclusions __1_____Ask a question __2_____Do background research __4_____Test the hypothesis (Experimentation) C. Research Sources: Match the three research sources below with their descriptions Encyclopedias State/local agencies Scientific journals a. _Journals____________ are the best place to locate current findings on the newest technologies b. _Encyclopedias_______ are a good place to find information on extinct species or historical theories c. _State/local agencies___ can help research the effects of pesticides on the squirrel population D. Hypothesis, Theory and Law : Rank these three terms in order of increasing experimental support. Hypothesis 1__Hypothesis_______________________ 2__Theory___________________________ 3__Law______________________________ 1 Theory Law E. Scientific Method : Read the paragraph and fill in the blanks that follow After studying about recycling, members of John’s biology class investigated the effect of various recycled products on plant growth. John’s lab group compared the effect of different aged grass compost on bean plants. Because decomposition is necessary to release the nutrients, the group hypothesized that older grass compost would produce taller bean plants. Three flats of bean plants (25 plants/ flat) were grown for 5 days. The plants were fertilized as follows: (a) Flat A: 450 g of three-month-old compost, (b) Flat B: 450 g of six-month-old compost, and (c) Flat C: 0 g compost. The plants received the same amount of sunlight and water each day. At the end of the 30 days the group recorded the height of the plants (cm). Hypothesis: _Plants with older compost will grow taller.______________________________________ ______________________________________________________________________________________ IV: _Age of Compost_____________________________________________________________________ DV: _Height of Plants_____________________________________________________________________ control: _Plants without compost___________________________________________________________ constants: _Sunlight, water, bean plant type__________________________________________________ For each, identify the hypothesis, IV, DV, the control and experimental group. 1. The addition of the chemical calcium chloride (CaCl) to water will increase its temperature. Hypothesis: If _we add CaCl______________________, then _the temperature will increase___________. Independent Variable: _CaCl_____________________ Dependent Variable: _Temperature____________ Control Group: _Only H20_______________________ Experimental Group: _with CaCl________________ 2. Watering a plant with salt water will kill the plant. Hypothesis: If _we water with salt_________________, then _the plant will die______________________. Independent Variable: _salt______________________ Dependent Variable: _plant health______________ Control Group: _no vitamins_____________________ Experimental Group: _with salt__________________ 3. A person that takes a vitamin supplement has better memory retention. Hypothesis: If _you take vitamins__________________, then _better memory________________________. Independent Variable: _Vitamins__________________ Dependent Variable: _memory_________________ Control Group: _no vitamins______________________ Experimental Group: _with vitamins____________ F. Graphs: Look at the Graphs below and answer the questions that follow. 2 In which year was there likely an abundance of bluegill food? In which year was there likely an increase in bluegill predators? 160 mice 10% of vitamins 1996, 1991 G. Microscopes: 1. To find the total magnification you must take the _eye piece_ and multiply it by the _objective lens_. 2. What is the total magnification used to view these onion cells through this setup?400 X 3. _4____ When viewing a prepared slide under the compound microscope, a student has to remove his glasses. This means he will need to readjust for fine focus with which part labeled to the left? 4. _A_ Which of the following came first in the scientific study of living things? a. light microscopes c. cell theory b. electron microscope d. model of DNA 5. _Course adjustment knob_- used to make BIG changes in focus 6. _Diaphram_____________ -adjusts the amount of light H. Interpreting Graphs What is on the x-axis? _Independent Variable/ Year__ What is on the y-axis? _Dependent Varialbe/ Number of bluegills_ What is the dependent variable? _number of Bluegills_ What is the independent variable? _year_______ What was the bluegill population in 1991? _80___ What happened to the population from 1996 to 2000? _decreased__ 3 What is on the x-axis? _Independent________ What is on the y-axis? _Dependent________ What is the dependent variable? _Mass of Fungi__ What is the independent variable? _Days________ Which data point (1-4) is probably invalid? _2____ How many days did it take for the fungi to reach 200 g? _5_ I. Characteristics of Life 1. Organisms are made of one (uni-) or many (multi-) _cells_. 2. Organisms must _reproduce_ to ensure long-term species survival. Can be asexual or sexual. 3. Organisms are based on a universal _code_ (DNA). 4. Organisms have a particular pattern of _growth_ and development throughout life. 5. Organisms obtain and use materials and _energy_. a) Autotrophs – b) Heterotrophs – 6. Organisms detect and respond to _changes_ in their environment. 7. Organisms must maintain a stable internal environment ; called _homeostasis_. 8. Populations of organisms experience genetic change over time; called _evolution_. J. Scientists _F____Redi a. all animals made of cells _G____Pasteur b. all plants made of cells c. all cells come from pre-existing cells _B____Schleiden d. observed cork; named cells _A____Schwann e. invented microscope; observed “animalcules” _C____Virchow f. maggot/meat experiment to disprove spontaneous generation _D____Hooke g. disproved spontaneous generation once and for all _E____Leeuwenhoek 4 II. Cytology – Study of cell structure and function A. Cell Theory – 3 Main Points 1) All organisms are composed of 1 or more _cells_. 2) The cell is the basic unit of _structure_and _function___. 3) All cells come from _pre-existing_ cells. B. Cell Types: For each characteristic, indicate yes or no for Prokaryotes and Eukaryotes Characteristic Nucleus? Membrane-bound organelles? Genetic material? Complex? Multicellular? Bacteria? Mitosis? Ribosomes? Plants and Animals? Prokaryote no no yes no no yes no yes no Eukaryote yes yes yes yes yes no yes yes yes C. Differences between plant and animals cells (complete the table by identifying ONLY the differences) Differences Size Different organelles present Shape due to cell wall Plant large chloroplast & cell wall Square Animal Large centriole & lysosome Circular D. Cell Transport: In the boxes below, indicate what direction the water moves and what will happen to the cell. 5 Hypertonic Solution Direction water moves: Hypotonic Solution Direction water moves: Isotonic Solution Direction water moves: out of cell A cell in a hypertonic solution will... into cell A cell in a hypotonic solution will... equal in & out A cell in a isotonic solution will... shrink swell stay the same a. In the picture to the right, are the water molecules moving into or out of the cell? into b. What type of solution is the cell in (hypotonic, hypertonic or istonic)? hypertonic c. What will eventually happen to the cell? burst Match the types of transport to the correct picture: Exocytosis endocytosis active transport_______ facilitated diffusion facilitated diffusion_____ active transport exocytosis___________ endocytosis______ E. The Fluid Mosaic Model and Movement through the Cell Membrane Word Bank: Diffusion, proteins, cell membrane, active transport, phospholipids, energy, low, high, osmosis The cell membrane is composed of _phospholipids__ and _proteins_. The Fluid Mosaic Model describes the _cell membrane_. Passive transport is also called _diffusion_ and it doesn’t require _energy_. Passive transport moves molecules from areas of _high_ to _low_ concentration. _Osmosis_ is a type of diffusion involving only the movement of water molecules. A nonspecific type of movement that requires energy is _active transport_ which moves molecules from low to high concentration. What is meant by the terms turgor pressure and plasmolysis? turgur pressure- amount of water pressure needed to hold shape. plasmolysis- not enough water pressure to hold cell membrane What is a selectively permeable membrane? only some things are able to pass through What is a concentration gradient? the difference in the amount of molecules inside and outside the cell 6 III. Biochemistry A. Water: Use the following word bank to fill in the blanks that follow hydrogen bonding floats acids temperature capillary action water polar 7 4 14 0 adhesion cohesion solvent bases high heat of vaporization homeostasis surface tension a. Water molecules have a slightly negative charge at one end and a slightly positive charge at the other end. This means that the molecule is _Polar_. b. _Cohesion__ is the attraction between the positive end of one water molecule and the negative end of another water molecule. c. Many of the 5 unique properties of water are caused by hydrogen bonding ~ _Capillary Action_ is the movement of water up thin plant tubes, caused by _Adhesion__ which means that water molecules ‘stick’ to other things. ~ The property that helps bugs stand on water is _Surface Tension__________________________. ~ Water expands when it freezes which makes ice _Float___________. ~ Water has a _high heat of vaporization_, so it takes a lot of energy to change from a liquid to a gas. This helps organisms maintain the amount of water they have in their bodies. ~ Water resists temperature change so organisms maintain _homeostasis_____________________ and keep a constant _temperature_. d. Because water is a polar molecule, it can dissolve many substances and is sometimes called “The _Universal Solvent_”. e. Cells are 95% _water_, therefore 95% of your entire body is made of water. B. Water chemistry Draw two water molecules – label the *atom names, *relative charges, and show *where a hydrogen bond would form. + + Hydrogen on top Oxygen on bottom Fill in the Blank Using the Following Words: dissolve, heat, freezing, cool, surface tension, cohesion, adhesion, polar *Because of the relative negative and positive ends of a water molecule, it is considered _polar______________. *_Cohesion_ - the property of water, due to hydrogen bonds, that allows it to stick to itself *_Adhesion_- the property of water that allows it to stick to other molecules *_Surface tension_ - a special case of cohesion; this is why bugs can walk on water and the dome forms on a penny *Solid form floats, preventing lakes and oceans from _freezing_ solid. * Water can absorb huge amounts of _heat_, which helps stabilize air temperatures around the globe. *Water absorbs heat when it evaporates, allowing organisms to _cool_ to release excess heat. *Water is able to _dissolve_ many substances (it is a good solvent) so the water inside and outside of cells is able to carry nutrients (solutes) into and around cells, and wastes (also solutes) away from cells. 7 *What is the strongest acid listed in Figure 2–2? Hydrochloric acid _____________________________________ *What is the pH of the weakest acid listed in Figure 2-2? _6.2____________________________________ *What is the pH of the strongest base listed in Figure 22? _13.0____________________________________ Figure 2-2 C. Organic Molecules: Place the following characteristics and diagrams into one of the four categories of organic compounds. Monomer: nucleotide Monomer: fatty acid Monomer: amino acid Monomer: monosaccharide Glucose, fructose & sucrose steroids Waxes & phospholipids DNA & RNA Enzymes, hemoglobin, & actin Found in the nucleus of cells Made at the ribosome of the cell Sugars Fats Lots are found in muscle cells Carbohydrates Nucleic Acid Monomer: Monosaccharide Lots found in Muscle Cells-Energy Monomer: Nucleotide DNA, RNA, Found in the nucleus of cells Glucose, Fructose & Sugar Sucrose Protein Lipid Monomer: Amino acids pH Values of Some Common Substances Made in Ribosomes, Enzymes, Hemoglobin, Actin D. Enzymes Fill in the Blank Using the Following Words: 8 Substance Fatty Acid, Waxes, & Monomer: Hydrochloric Phospholipids, fats acid Sulfuric acid Tomatoes Rainwater Pure water Sea water Ammonium chloride Sodium hydroxide pH 1.0 1.2 4.2 6.2 7.0 8.5 11.1 13.0 substrate, active site, denature, protein, -ase, catalyzes, activation *Special kind of _Protein_ (macromolecule) that _Catalyzes_ (speeds up) chemical reactions. *_Denature_ - when the shape of the enzyme is changed, making it unable to function properly. *Enzyme names usually end in _-ase_. * _Substrate_ - the substance on which an enzyme acts *_Active Site_ - the specific site on the enzyme that binds to the substrate (the “business” end) *Enzymes lower the _Activation_ energy of a reaction, meaning they lower the amount of energy needed for a reaction to progress. E. Enzyme Activity graphs: Use the graphs below to answer the following questions Acid works best at a pH of 2-3. Trypsin works best at a pH of 8-9. Top Chart Which enzyme above works well in acidic conditions? Pepsin Bottom Chart What is the substrate of amylase? Starch Which enzyme above works well in basic conditions? Trypsin What is the product of amylase? Sugar What is optimal pH for pepsin? What does the graph indicate about adding amylase to a starch solution? More starch is digested at a quicker rate 2-3 What is the optimal pH for trypsin? 9 F. Chemical Reactions Fill in the Blanks Using the Following Words: Hydrolysis Dehydration Synthesis _Dehydration Synthesis_ - reaction that links monomers together (water is produced in this reaction) *monomer + monomer polymer + water _Hydrolysis___________ - reaction that breaks apart polymers into their monomers (water is broken and consumed) *polymer + water monomer + monomer IV. Energy: Photosynthesis/Respiration A. Photosynthesis & Respiration and food chains & webs What is the equation for photosynthesis? _Carbon Dioxide CO2 + Water H2O Yields Oxygen O2 + Glucose C6H12O6_ What are the reactants? What are the products? _Reactants: CO2 + H20 Products: O2 + C6H12O6_ What form of energy is produced by photosynthesis? _Sugar/glucose/C6H12O6_ In which cell organelle does photosynthesis occur? _Chloroplasts_ What is the equation for respiration? _O2 + C6H12O6 yields CO2 + H20_ What are the reactants? What are the products? _Reactants: O2 + C6H12O6 Products: CO2 + H2O_ What form of energy is produced by respiration? _ATP_ Where in the cell does respiration take place? _Mitochondria_ B. The Carbon Dioxide/Oxygen Cycle Fill in the Blanks Using the Following words: heterotrophs, (4) CO2, (4) O2, glucose, chloroplasts, mitochondria, photosynthesis, chemical, respiration, autotrophs, solar, (2) light, (2) C6H12O6, glucose, (2) water a. _Autotrophs (plants)_use organelles called _Chloroplasts_in their leaves to collect _Solar (Sun)__ energy. b. . _Photosynthesis__occurs so plants can make _C6H12O6 Glucose_to use for energy. c. Photosynthesis converts _Solar (Sun)_energy into _Chemical (C6H12O6)_energy. d. Photosynthesis uses _CO2_, _H20_ and _light_energy to form _O2_& _C6H12O6_. e. Animals that can’t make their own food are called _Heterotrophs_. f. Animals, plants, and fungi all use organelles called _Mitochondria_ to perform a process called _Respiration__ which breaks down food molecules to produce ATP for energy. g. Respiration uses _O2_ and _C6H12O6_ to produce_CO2__ and _H20_. h. The gas released by respiration is _CO2_; the gas taken in by photosynthesis is _H2O_________. 10 i. The gas taken in by respiration is _O2_; the gas released by photosynthesis is _O2__. j. The letter _C_____ represents the rabbit dying and replacing nutrients in the soil. k. The letter _A_____ represents carbon dioxide being taken in to perform photosynthesis. l. The letters _B_____ and _E_____ show CO2 being released into the atmosphere by respiration. m. The letters _F_____ and _D_____ show carbon compounds being ingested for metabolic purposes. C. Fill in the cycle below. 1._____Sunlight________ (energy to photosynthesis) 3. _CO2_________ and _H2O__________ (products of respiration) 5. ____________ATP_______________ (energy made from respiration) 2. __Chloroplast___________ (what is this organelle?) 4. _O2______________ and __C6H12O6______ (products of photosynthesis) 6. _Mitochondria__________________ (what is this organelle?) D. Cellular Respiration – converts _C6H12O6_ energy stored in glucose into _ATP___. *General equation: O2 + C6H12O6 _CO2________ + __H2O______ + energy in the form of _ATP_. *Pathway depends on the organism and oxygen conditions. Regardless, the first step is glycolysis. * Glycolysis – is splitting sugar E. Aerobic respiration uses _Oxygen_ to break down _C6H12O6__ which results in __ATP__, _CO2__, and _H2O__. F. Anaerobic respiration does not use oxygen. It is used by unicellular organisms that need less energy. Anaerobic respiration – purpose is to regenerate NADH so glycolysis can continue. Two types: 1) _ Lactic Acid_ fermentation – occurs in fatigued muscle cells; used when producing cheese and yogurt; lactic acid is a waste product. 11 2) _Alcoholic_ fermentation – occurs in some yeast cells; used to produce beer, wine and _Alcohol_. Alcohol is produced as a waste product. V. Cell Division: Cell cycle, mitosis, meiosis, DNA, protein synthesis A. Cell Cycle Identify the following stages of mitosis and indicate the correct order. A. _Prophase_____________ B. __Telophase_____________________ D.__Interphase_____________________ C. _Anaphase____ E. _Metaphase___________ 1. What order should the phase above be in? _Interphase_ _Prophase__ _Metaphase_ _Anaphase_ _Telophase_ _Cytokinesis__ 2. The Cell cycle is made of two stages: _Interphase_ and cell division. Interphase consists of 3 phases: _G1_, _S_ and _G2_. During the _S_ phase DNA is copied. 3. Look at the picture to the right. What is the term for this process? Crossing Over b. In what phase of meiosis does the following occur? Prophase c. What does this process cause in the gametes? Genetic Variation 4. If a gamete of an organism has 6 chromosomes, how many will its body cell have? _12_ 5. 7. If a liver cell of an organism has 32 chromosomes, how many will its gametes have? _16__ 12 B. Mitosis Fill in the Blanks Using the Following Words: replicated, interphase, prophase, metaphase, anaphase, telophase, cytokinesis, centromere, sister chromatid, chromatin, centrioles, spindle fibers, plate, furrow, centromere, cytokinesis, prophase, telophase 1. A chromosome is made of two identical parts called _Sister Chromatids_. 2. The parts of a chromosome are held together by a _Centromere_. 3. Only animal cells have _Centrioles_ to help with chromosome movement. 4. During _Anaphase_ sister chromatids are separated at the _Centromere__ and are pulled to opposite ends of the cell. 5. DNA is _Replicated_ during _interphase_ so each cell will have the same information. 6. Chromosomes line up along the equator of the cell in _metaphase_. 7. Loose or uncoiled chromosomes are actually DNA in the form of _Chromatin_. 8. During _Telophase_ spindle fibers shorten which pulls chromosomes to the poles. 9. After the nucleus divides, _Cytokinesis_, or division of the cytoplasm, occurs. 10. In plant cells only, a cell _Plate_ forms during _Cytokinesis__. 11. In animal cells only, a cell _Furrow_ forms during _Cytokinesis__. 12. _Spindle Fibers_ are attached to chromosomes at the centromere 13. _Prophase_- chromatin condenses and becomes visible chromosomes 14. The picture to the right is an onion cell going through _(no picture)_. 15. _Prophase__- nuclear membrane begins to disappear 16. _Cytokinesis__- two daughter cells are formed 17. _Telophase__- nuclear membrane begins to form around each set of chromosomes 13 C. Other types of division and Asexual Reproduction in Organisms Fill in the Blanks Using the Following Words: binary fission, budding, mitosis, sporulation, vegetative propagation, regeneration 1. _regeneration___________________________ - repairing severed appendage (starfish or lizard tail) 2. _Vegetative Propagation__________________- growing new roots for a plant from plant clippings 3. _Sporulation____________________________- new mold growing where spores have fallen, also occurs in ferns 4. _binary fission___________________________- only occurs in prokaryotes 5. _budding_______________________________- occurs in yeast and hydra when a tiny bud sprouts from a parent 6. _mitosis________________________________- occurs in single celled eukaryotes like paramecium, splitting the nucleus D. Meiosis Fill in the Blanks Using the Following Words: gametes, 1, the same, 46, 23, eggs, sperm, homologous, diploid, half, 2, haploid, prophase, zygote, fertilization 1. Meiosis is a type of cell division that makes sex cells or _gametes__. 2. The two types of sex cells are _sperm__ and _egg__. 3. Mitosis consists of _1_ division(s), while meiosis consists of _2__ division(s). 4. Mitosis makes cells with _the same_ number of chromosomes as the parent cell, but meiosis produces cells with _half_ the number of chromosomes as the parent cell. 5. A human’s body cells have _46_ chromosomes; sex cells or gametes have __23__. 6. For every chromosome your mother gave you, there is a _homologous__ chromosome from your father with information regarding the same trait(s). 7. When a cell has a full complement of homologs from each parent, the cell is said to be _diploid_ (2n). 8. Sex cells have only ONE set of chromosomes, they are called _haploid__. 9. When egg and sperm combine during _fertilization__, the _zygote__ that is formed has the normal 2n number of chromosomes. 14 E. Mitosis vs. Meiosis Complete the chart below by checking off which cell division has which characteristics Description Cell division in body cells Cell division in gametes Eukaryotic Cells Produces haploid cells Produces diploid cells Produces 2 cells Produces 4 cells Used by bacteria to divide Mitosis X X Meiosis Neither X X X X X X X VI. DNA A. DNA & Protein Synthesis – the central dogma (DNA mRNA protein) Fill in the Blanks Using the Following Words: anticodon, nucleus, attaches, mRNA, unzips, single, protein, ribosome, mRNA, tRNA, pore, ribosome, codons, nucleotides, double, S, Cytosine, Thymine, two, one, one, cytoplasm B. Structure of DNA and RNA DNA and RNA are made of _nucleotides_. Each nucleotide consists of three parts: 1) 5-carbon sugar (DNA = deoxyribose; RNA = ribose) 2) Phosphate (PO4) 3) Nitrogenous Base (DNA = ATGC, RNA = AUGC) DNA is _double_-stranded and in the shape of a double-helix while RNA is _single_-stranded. C. DNA replication Before a cell enters mitosis, the DNA replicates itself so that each daughter cell receives a copy of the DNA. This occurs during the _S_ phase of the cell cycle. 1) An enzyme _unzips_ the strand by breaking the hydrogen bonds between nitrogenous bases. 2) Another enzyme _attaches_ free nucleotides to the exposed templates. Base-pairing rules – Adenine bonds with _Thymine_ and Guanine with _Cytosine_. Replication results in _two_ new molecules of DNA, each made of _one_ strand of old and _one_ strand of new DNA. D. Protein synthesis – Two major steps 1) Transcription – production of _mRNA_ from the DNA template. Happens in the _Nucleus_ of eukaryotic cells. a) An enzyme temporarily unzips a gene to be read. At the same time, it builds a strand of _mRNA_ that is complementary to the DNA. b) When RNA polymerase finishes, the mRNA is released and travels to the _ribosome_. It exits through a structure known as a nuclear _pore or membrane_. 15 2) Translation – production of a _protein_ from the mRNA template. Happens in the _cytoplasm_ and is accomplished by structures called _ribosomes_. a) Ribosomes read the mRNA in 3-base segments called _Codon_. A codon chart can be used to determine which amino acid will be brought to the ribosome when this codon is encountered. b) A different type of RNA called _tRNA_ carries individual amino acids to the ribosome. Each tRNA has a 3-base region that is complementary to a codon – this is called an _anticodon_. 16 E. Scientists _C_____ Hershey & Chase _D_____ Franklin _A_____ Edwin Chargaff B______ Watson & Crick a. Discovered A-T and G-C base-pairing rules b. Built first 3-d model of DNA c. Discovered DNA is the genetic material d. X-ray photo of DNA which gave clues to DNA’s helical structure F. Identify the following parts of the DNA molecule Adenine, Guanine, Thymine, Cytosine, Phosphate, Deoxyribose, Hydrogen Bond G. Circle the answer that best completes the sentence. 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. Protein Synthesis occurs on structures called ribosomes/nuclei mRNA is made in the nucleus/cytoplasm. DNA Replication occurs in the nucleus/cytoplasm tRNA and Amino Acids are floating around in the nucleus/cytoplasm. DNA is double/single stranded. DNA contains thymine/uracil. RNA contains the sugar deoxyribose/ribose. Transcription produces mRNA/tRNA. Translation produces mRNA/tRNA. Replication produces DNA/RNA. H. Complete the following table DNA DNA A T G G T A C C A T A C C A T G G T mRNA A U G G U A C C A tRNA U A C C A U G G U Replication 17 I. Transcription and Translation: Use the codon chart below to transcribe and translate the following DNA sequence. DNA STRAND - TACGGCCATTTCGATTTGAGCATC 1. mRNA ____________________________________________________ 2. amino acids: _________________________________________________________________ ______________________________________________________________________________ 3. This protein is made of _Eight______________ amino acids. (give the number of amino acids) J. DNA Technology Fill in the blanks using the following words: DNA sequence, genes, profiling, identical, fraternal, collaborative, same 1. DNA _Profiling______________________ is used to identity crime suspects (such as murder and rape). 2. Using electrophoresis, scientists can determine an individual’s DNA fingerprint. No 2 people have the _Same___ profile, except for _identical_ twins. 3. Human Genome Project was a _Collaborative_ effort because 13 countries worked on it. 4. The objective of the Human Genome Project was to understand the _DNA Sequence_. 5. Scientists wanted to determine the sequence of bases to find the _Genes__ responsible for diseases. 6. Look at the electrophoresis sample below. Who is the father of the child? _Dad 2__ baby 18 mom dad 1 dad 2 VI. Genetics A. Vocabulary Word Bank: phenotype, gene, heredity, genetics, genome, recessive, dominant, Gregor Mendel, trait, genotype, alleles, homozygous, heterozygous 1. _hetero_______________- two different alleles, a hybrid (Tt) 2. _heredity______________- is the passing of characteristics from parent to offspring 3. _genotype______________- is the type of genes or alleles present in an organism’s genome 4. _dominant_____________- form of gene that always shows even in the presence of recessive allele. 5. _genome_______________- all of the genes in an organism 6. _alleles________________- are different forms of the same gene (ex: tall vs. short) 7. _homo_________________- two alleles of the same form that make up a genotype, pure breed (TT or tt) 8. _Gregor Mendel_________ is the Father of Modern Genetics 9. _recessive______________- form of a gene only expressed in a homozygous state 10. _trait_________________- is an inherited characteristic 11. _phenotype____________- is an organism’s physical appearance 12. _genetics______________- is the study of heredity 13. _gene_________________- is a segment of DNA located on a chromosome B. Mendel’s Experiments: Independent Assortment, F1 – first filial, F2 – second filial, Segregation, Dominance 1. Mendel’s experiments involved a parental generation (P-generation) that was true-breeding. Each parent had a different phenotype (ex: purple x white). The offspring of the P-gen were considered the _F1________ generation (and were all purple). 2. When the F1 was crossed with itself, these offspring were considered the _F2______ generation (white re-appeared). 3. Mendel developed three principles based on his mathematical analysis of his experiments with pea plants: 1. The principle of _Dominance___________________ states that some alleles are dominant and some are recessive. 2. The principle of _Segregation_________________ states that during gamete formation, alleles for a particular trait will separate (or segregate) during meiosis. 3. The principle of _IA_______________________________ states that genes for different traits do not influence each other’s inheritance. 19 C. Punnett Squares – shows possible outcomes of a mating and predicts what proportion of the offspring will have a given genotype *Monohybrid crosses – deals with only _1______ trait at a time. (ex: red x white flowers) Fill in the square to the right. Complete the following Punnett squares. 1. a. Fill-in the Punnett Square: Tt X TT b. How many offspring will be tall? _________ c. What percentage will be short? __________ 2. A heterozygous brown bear (B) was crossed with a black bear (b). a. Fill-in the Punnett Square. b. What are the possible genotypes of the offspring? c. What are the possible phenotypes of the offspring? 3. A homozygous brown bear is crossed with a homozygous brown bear. a. Fill-in the Punnett Square. b. What are the possible genotypes of the offspring? c. What are the possible phenotypes of the offspring? *Dihybrid cross - involves 2 traits at once. Be sure to show independent assortment of alleles HINT: Use the FOIL method to get possible combinations. TtRr x TtRr Fill in the square to the right. D. Alternative Inheritance _____________ dominance – blending of phenotypes 20 Show the cross of a white and pink flower below: Ex: snapdragon flower color -Only two alleles: red(R) & white(W) -Heterozygotes show blending of phenotype -RR __________ flower -RW _________ flower -WW _________ flower *Alternative Inheritance (cont.) Word Bank: Polygenic multiple What % should be pink? _______ red? _______ white? _______ X XX codominance 2 Y XY 1. When more than two alleles exist for a trait in the population, this is called _mulitple_ alleles. 2. However, each individual can only possess _2_ alleles of the possible ones (one from mom, one from dad). Ex: Human blood types – 3 alleles are A, B, and O 3. _Codominance_ - when two alleles are both expressed fully if present Ex: Human blood type – A and B are codominant. A person with genotype IAIB will have type AB blood. 4. Some characteristics are determined by several genes – this is called _polygenetic_ inheritance. Height, weight and skin pigmentation are examples of traits controlled by many genes. 5. Sex-linked traits – genes carried on the sex chromosomes (_X___ and _Y__) are considered sex-linked. -Genes on the X-chromosome are said to be X-linked. Examples are red-green colorblindness and hemophilia. -Females carry the alleles _X__ and males carry the alleles _Y__. 6. Fill in the Punnett square to the right and write the phenotype/sex of all possible offspring. 1 colorblind male = XrY 2 normal females = XRXR, XRXr 1 normal male = XRY 7. A man with type AB blood marries a woman with type O blood. Give the genotypes and phenotypes of all possible offspring. Genotypes:___AO, BO_____________________ Phenotypes: _Type A, Type B_______________ Blood Types: 21 A = AA or AO B = BB or BO AB = AB O = OO E. Pedigrees – used to show inheritance of traits through different generations. 1. Squares represent _males__. 2. Circles represent _females__. 3. Horizontal lines between a circle and square represent a _marriage_. 4. Vertical lines coming down from a horizontal line represent _children_. 5. _shaded_ shapes represent individuals with the trait. 6. _empty_shapes represent individuals without the trait. 7. Is this a dominant or recessive trait? recessive 9. Is this a sex-linked trait? yes 8. How can you tell? 10.How can you tell? Only males have the trait. The male with the trait should have had children express the trait if it was dominant. F. Genetic Disorders Word Bank: 21st, Down Syndrome, karyotype, trisomy, chromosomal 1. Only a _Karyotype_ detects a _chromosomal_ mutation caused by nondisjunction. 2. Down Syndrome is __trisomy__ on the _21st_ chromosome pair. 3. Identify the disorder of the following karyotype: _Down Syndrome__ 4. Identify the gender of the following karyotype: _female________ 22 G. Applied Genetics Word Bank: DNA 2 Translocation harmful sex cells Inversion frameshift Duplication substitution helpful deletion Genetic variation – variation is caused by mutations to genes, which are shuffled and recombined during meiosis and fertilization Mutations – changes to genetic material; must occur in _sex cells_ to be passed on to offspring - mutations may be neutral, _helpful_, or _harmful_ depending on what is changed. 1) Chromosomal mutations – changes to entire chromosomes or pieces of them; Name the 4 types shown below _Deletion_________ _______ _Inversion________ ________ _Duplication______ __________ __Translation_____ __________ 2) Point (gene) mutations – changes to one or a few nucleotides in a particular gene a) _Substitution___________ – one base is changed to another (ex: A instead of a T) b) _Frame Shift___________ - results from an insertion or deletion of one nucleotide; shifts reading frame Genetic Engineering – the use of special biochemical techniques to manipulate _DNA____________. Recombinant DNA – a piece of DNA containing genes from _Two___________________________ organism VIII. Evolution A. Matching 1. _D__ Theory that eukaryotes formed from prokaryotes in symbiotic relationships. 2. _F__ A change in genetic material. 3. _H__ Accurate fossil age based on amounts of radioactive isotopes like uranium. 4. _J__ Formation of a new species by some form of isolation. 5. _B__ Unrelated organisms acquire similar characteristics because of similar environments. 6. _C__ Population has a trait that moves toward an extreme 23 because of environmental pressure. 7. _E__ Species no longer exists on Earth. 8. _G__ Evolutionary pattern of stability interrupted by rapid changes. 9. _I__ Approximate age of fossil is determined by where it fits in the fossil record. 10. _A__ Two species evolve in response to changes in the other. A B C D E F G H I 24 Coevolution Convergent evolution Directional selection Endosymbiosis Extinction Mutation Punctuated equilibrium Radioactive dating Relative dating B. Charles Darwin Word Bank: Acquired Characteristics Natural Selection Beagle diversity equilibrium On the Origin of Species gradualism Galapagos 1. British naturalist who sailed on H.M.S. _Beagle_ around the world, making many important observations of biological _Diversity__. 2. Observations of finches, turtles and marine iguanas on the __Galapagos__ islands were very influential for Darwin. 3. Supported _Gradualism___ - the idea that evolution occurs slowly but steadily over time. 4. The opposite idea, proposed by Stephen Jay Gould, hypothesizes that organisms evolve rapidly in bursts, followed by time unchanged (punctuated _Equilibrium__). 5. Darwin suggested that random variations take place in living things resulting in some individuals being better able to survive. Those with better traits are more likely to survive until reproduction, during which their beneficial variations are passed on to the next generation. Darwin called this process _Natural__ _Selection_. 6. Darwin published his theory in a book called _On the Origin of Species_. 7. J.B. Lamarck – proposed “Use and Disuse” or “_Acquired Characteristics_” before Darwin. Thought traits acquired during an organism’s lifetime were passed on to offspring. (ex: giraffe neck becoming longer each generation because each individual stretches their neck longer during their lifetime). Lamarck was disproven. We now understand why most acquired traits do not change genes, and are therefore not inherited by their children. Short Answer: Using the diagram to the right, answer the question 1. The forelimbs of the organisms are examples of what types of structure? _Homologous__________ Evolution- the theory that there is a gradual change in characteristics over time. 25 B. Origin of Life – Scientists Hypotheses: Disproving Spontaneous Generation Word Bank: sealed, bacteria, open, gauze, vital, air, spontaneously a. Through the early 1800s, people believed organisms could develop _Spontaneously__ an idea know as spontaneous generation. b. In 1668, many believed maggots spontaneously generated from rotting meat. Francis Redi’s experiment disproved this by experimenting with meat in _Open_ jars, _Sealed_ jars and jars covered with _Gauze__. c. Some people still supported spontaneous generation but thought that air was a _Vital_ force, necessary for it to occur. d. In 1859, Louis Pasteur completely disproved spontaneous generation by using a special flask that allowed _air_ in but captured bacteria before they could get to the broth. No _Bacteria_ grew in the flask after boiling. There was no spontaneous generation. D. First Life Word Bank: prokaryotic, variety, eukaryotic organic, photosynthesis, oxygen a. Earth’s atmosphere had to be very hot and with little oxygen for the first _Organic_ molecules to form. b. _Prokaryotic_ cells were the first to evolve. c. When cells gained the ability to do _Photosynthesize_, they used up carbon dioxide and put more _Oxygen_ into the atmosphere. d. With more oxygen in the atmosphere, a wider _Variety_ of organisms evolved on land. e. Some cells engulfed each other leading to the formation of more complex cells with a nucleus and other organelles creating _Eukaryotic_ cells. 26 IX. Classification, Taxonomy & Kingdoms 1. Place the following characteristics in the proper Kingdoms. Those that are used more than once have the number of times they will be used in parentheses. yeast eukaryotes(4) mushroom protozoan amphibian jellyfish conifer only unicellular flower bird decomposer (2) cellulose prokaryotes only heterotrophs(2) dicot algae only autotrophs mold multicellular (3) multi- & unicellular fish mammals cell walls insects hetero- & autotroph (2) K. Animalia K. Plantae K. Fungi K. Protista Eukaryotes Only Heterotrophs Multicellular jellyfish amphibian bird fish mammals insects reptile Eukaryotes Only Autotrophs Multicellular Conifer Flower Cellulose Dicot Cell Walls Moss Tree Fern Monocot Eukaryotes Only Heterotrophs Multicellular Yeast Mushroom Mold Protozoan Eukaryotes Multicellular & Unicellular Decomposer Heterotrophs & Autotrophs Algae moss tree reptile fern monocot E.coli K. Archaebacteria & Eubacteria Prokaryote Only Unicellular decomposer hetero & Auto trophs E. Coli 2. The diagram below is a cladogram which shows evolutionary relationships between organisms. a. Which 2 organisms are the most related? B&C b. How long ago did A & D split? 3 MYA (mya = millions of years ago) A B c. Which organism is most related to G? F C D E F G d. Which 2 organisms are the LEAST related? A & G 1 mya e. Which 2 organisms are MORE related: D & E or E & G? E & G 3 mya f. Which 2 organisms are LESS related: A & D or D & F? D & F g. Which 2 organisms split ~8 mya? A & G 8 mya h. Which organisms would be in the same phylum as G? E & F i. If organism B is Felis domesticus, what is the most likely genus of organism C? Felis j. Which organism has changed the least in 11 million years? A 27 11 mya Classification cont. 3. Hierarchy of classification – created by __Linnaeus_, a Swedish botanist. 4. __Kingdom__, Phylum, _Class__, Order, _Family_, Genus, _Species_ (Domain has recently been added) 5. Organisms named by Genus species (binomial nomenclature). What is the scientific name of a human? Homo Sapiens 6. Use the dichotomous key to identify the flower. Starflower: Trientante borealis 7. Use the diagram to the right to answer the following questions. Which species went extinct? W How long ago? 10 MYA 8. Which of the beetles below are most closely related? Justify your answer. Oak Weevil & Hazelnut Weevil both have the same genus 28 B. Viruses- Word Bank: vaccines, host, lysogenic, capsid, bacterial, living, diseases, cells, DNA, lytic, RNA 1. Not considered _living_because they need a _host_ cell to reproduce and are not made of _cells__________. 2. Cause _diseases___________ such as AIDS, common colds, flu, and genital warts. 3. Basic structure consists of a _capsid_ (protein coat), nucleic acid core (can be _DNA_ or _RNA_). 4. Two types of life cycles 1) _Lytic_ – viral entry, assembly of new viruses, burst out of cell 2) __Lysogenic_ – viral entry, hides as a provirus and is copied when cell divides, enters lytic cycle when triggered. 5. _Vaccines__ are used to prevent viral infection; made of non-functional virus parts that trick our immune systems. 6. Viral infections cannot be treated with antibiotics. Only _Bacterial__ infections can be treated with antibiotics. C. Bacteria Shapes: _Bacillus_ (rod), __Coccus__ (spherical) or _Spirillium_ (spiral) D. Kingdom Protista (The “everything-else” kingdom) Word Bank: cilia algae flagella pseudopods protozoa Most unicellular but some are multicellular Some cause diseases such as malaria. Classified based on nutrition: 1) Plant-like protists – “__Algae_” ; All are mostly autotrophic 2) Animal-like protists – “_protozoa___” ; All are heterotrophic 3) Fungus-like protists – slime molds & water molds; All are heterotrophic/saprobic How do the following cells move to the right? A B C A. _Cilia_ B. _Pseudopods__ C. _Flagella__ E. Kingdom Fungi (Molds, mushrooms, yeast, mildew) Word Bank: chitin, fungus, hyphae, outside, multicellular, eukaryotic, algae 1. Cell type: _Eukaryotic_ 2. # of cells: most _Multicellular__; yeast is unicellular 3. Cell wall made of: _Chitin_ 4. Digest food _Outside__ of their bodies (extracellular digestion) 5. Composed of microscopic filaments called _Hyphae_. F. Lichens Example of mutualism between a __Fungus__ and an _Algae__. X. Ecology 29 Ecology - how organisms interact with each other and their environment Ecological hierarchy from largest to smallest: _Biosphere_, Biome, _Ecosystem_, Community, Population, Individual A. Biomes – Large geographic areas with characteristic __Climate__ ranges, rainfall, and organisms. 1) _Terrestrial_-land-based biomes 2) _Aquatic__ - water-based biomes B. Ecosystems – defined by characteristic biotic and abiotic factors 1) biotic factors – living 2) abiotic factors – non-living 3) Niche – Area where organisms live and thrive C. Ecosystem dynamics Trophic levels – feeding levels, often represented as levels on a pyramid Biomass – total _growth_________ or organic matter at each trophic level 1) Producers – autotrophic; highest biomass 2) Primary consumers – eat autotrophs; lower biomass 3) Secondary consumers – eat primary consumers; lower biomass Scavengers- Eat left overs Herbivores- Eat Plants Carnivores- Eat Meat Omnivores- Eat Meat & Plants Community – consists of _All______the organisms that live in an area. Population – all the organisms of the same _Species__________ living in an area. D. Growth Curve 1)Limiting factors – conditions that _decrease_ the size of a population. List three possible limiting factors: 2) Exponential growth – growth rate in each new generation is a multiple of the previous generation (Letter _B___ on the graph) 3) Carrying capacity – maximum number of organisms that can be supported by environmental resources (Letter __E___ on the graph) 4) Symbiotic relationships – two organisms live closely together; a) parasitism – parasite _Benefits_____________ while the host is _harmed____________. (eg. ticks, fleas, tapeworms) b) mutualism – both parties __benefit_______________ (eg. lichens, nitrogen-fixing bacteria in root nodules) c) commensalism – one benefits, the other is mostly _unaffected__________________ (eg. orchids, vultures follow hyenas) E.Food Chains and Webs – graphical displays of energy transfer between and among trophic levels Food chain – linear (straight line) Food web – shows all the interconnected food chains in an ecosystem In chains and webs, arrows point in the direction of energy flow (from prey to predator) Using the food web at right: a) Where do killifish get their energy?___Copepod & Larvae_______________________ b) How many different organisms get energy from snappers? __5___ c) Do orcas get energy indirectly from diatoms? __Yes______ d) Which organism provides nutrients for the largest number of organisms? Snapper 30 F. Ecological Succession – community changes in which new populations or organisms gradually replace existing ones Occurs because of natural or human disturbance (volcanic eruption/deforestation) 1) _Pioneer______________ communities – first to colonize an area; gradually replaced by members of the climax community 2) Climax community – community that has reached relative stability; VA climax community is mostly oak/hickory deciduous forest. Order the steps of succession (A-D) in the diagram at right _C, A, B, D_____ G. Nutrient Cycles Water cycle (define the terms) 1) Precipitation- Water falls from the sky 2) Transpiration – Water leaves the plants 3) Evaporation - Water rises to the sky 4) Runoff – Water flows down land to rivers and streams H. Carbon and Oxygen cycles – (Word Bank: burned, H2O, autotrophs, CO2, respire, O2, aerobic, food) 1) Photosynthesis releases _O2_____ from _Autotrophs__ . 2) Respiration releases _CO2_______ from _Food_______ . 3) Carbon dioxide is released when fossil fuels are _Burned_, and when organisms _respire_. 4) Oxygen is produced by _Autotrophs___ during photosynthesis. 5) Oxygen is consumed by __Aerobic__________ organisms for use during cellular respiration. I. Nitrogen Cycle 1) Nitrogen __Fixation___________________ - converting gaseous nitrogen in atmosphere into usable forms. a) What organisms are the primary fixers of nitrogen? _Bacteria___________________ 2) _Denitrification___________________________ - process by which bacteria break down nitrogen compounds and release nitrogen gas back into the atmosphere. XI. Kingdom Plantae Plants! 1. 2. 3. 4. 5. cell type: __Eukaryote____________________ # of cells: __Multicellular___________________ nutrition: __Autotroph______________________ cell walls contain: _Yes_________________ classified based on vascular tissue, seeds and flowers Plant Kingdom Non-Vascular- Bryophytes (mosses) Vascular ( contain xylem and phloem) Seeded Seedless Angiosperm- seeds enclosed by protective __Fruit__ (flowering plants) Monocots Gymnosperm-seeds naked; produced in _Cone_ (conifers) Dicots 6. Flowers are structures specialized for _Sexual____ reproduction. 7. The male part is called the _Stamen___________________. Pollen is produced in the __Anther___. 31 8. The female part is called the __Pistal__. Eggs are produced in the __Ovary_____. 9. Identify structures 1-5 from the flower picture. 1. Anther 2. Style 3. Ovary 4. Petal 5. Sepal XII. Kingdom Animalia Animals! 1. Cell type: _Eukaryotes________________________ 2. # of cells: _Multicellular________________________________ 3. Do animals have a cell wall? _No______ chloroplasts? __No_________ 4. Nutrition: _Heterotrophs_________________________ 5. Most have tissues and body symmetry -__Radial_____________ symmetry – any number of imaginary planes passing through the center of the organism from top to bottom will divide it into equal halves (ex: corals and jellyfish) -_Bilateral_______________ symmetry – only one imaginary plane divides the organism into equal halves (ex: humans and insects) 6. Most show _Cephalization_______________________ - a concentration of sense organs on one end of the body 7. Most animal species are __Invertebrates____________________, meaning they have no backbone. Major Animal Phyla – (Word Bank: cartilage, bilateral, spiny, mammary, scaly, feathers, radial, soft, bone, oxygen, sponges, segmented, jointed, moist, exoskeleton, wings 1) Porifera – simplest, no tissues/organs, filter-feeders (ex:. __Sponges______________) 2) Cnidaria – _Radial____________ symmetry, stinging cells, polyp & medusa form (ex: corals, jellyfish, sea anemones) 3)Platyhelminthes – simple tissues, organ systems, cephalized, __Bilateral___________ symmetry, free-living and parasitic (ex: flatworms) 4) Annelida – __Segmented__________________ bodies, complex organ systems (ex: roundworms, leeches) 5) Mollusca – _Soft________-bodied; some make shells; have muscular “foot”; internal organs (ex: snails, slugs, clams, squid, octopus) 6) Arthropoda – segmented body; tough __exoskeleton_________________; __jointed____ appendages; complex organ systems (ex: insects, spiders, crabs, lobsters, scorpions, crustaceans) 7) Echinodermata – _spiny_____________ skin; internal skeleton; suction-cuplike tube feet (ex: starfish, sea urchins, sand dollars) 8) Chordata – notochord; backbone in most (exception: tunicates and lancelets) Major Chordate Classes a) Chondrichthyes – skeletons made of __cartilage____________________ (ex: sharks, rays, skates) b) Osteicthyes – skeletons made of __bone______________ (ex: bony fishes such as goldfish, tuna, trout) c) Amphibia – water & land life stages; breath w/lungs as adult; _moist_______ skin; lacks scales & claws (ex: salamander, frog) d) Reptilia – dry, __scaly___________ skin; lungs; terrestrial egg-layers (ex: lizards, snakes, turtles) e) Aves – __feathers_________ for flight; legs with scales; front limbs modified into _wings___ (ex: all birds) f) Mammalia – hair; ___mammary_ glands; breathe __oxygen____ (ex: platypus, bears, cow, human) 32
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