Supplementary Table 4. Target genes of X. sorbifolia novel and conserved miRNAs.
miRNA
Target
EST
Target Description.
Alignment
miRNA
EY693630
Chromosome chr15 scaffold_37;Vitis vinifera|
Target
miRNA
TC6712
DNA-directed RNA polymerase;Vitis vinifera
Target
miRNA
CK938357
Proline-rich protein family-like; Oryza sativa Japonica Group
Target
miRNA
Xso-M001
CX045646
Chromosome chr8 scaffold_34; Vitis vinifera
Target
miRNA
TC25281
DN619250
EY707686
Small heat shock protein;Nicotiana tabacum
Membrane attack complex component/perforin/complement
C9;Medicago truncatula
Target
miRNA
Target
miRNA
Extensin; Volvox carteri
Target
miRNA
Xso-M002
EY650805
Chromosome chr13 scaffold_17;Vitis vinifera;
Target
miRNA
Xso-M003
EY734554
Envelope glycoprotein;Human immunodeficiency virus 1
Target
miRNA
Xso-M004
EY719510
Chromosome chr12 scaffold_38;Vitis vinifera
Target
20 AAGAAACGAUGAAGGUGAUC 1
:::::::::::::::::.
569 CUCUUUGCUACUUCCACUGC 588
21 AAAGAAACGAUGAAGGUGAUC 1
: :.:::::::::::.:::.:
663 UCUUUUUGCUACUUCUACUGG 683
20 AAGAAACGAUGAAGGUGAUC 1
::.::::.:::::..:::.:
307 UUUUUUGUUACUUUUACUGG 326
21 AAAGAAACGAUGAAGGUGAUC 1
:::: : ::::::::::::.:
547 UUUCAUCGCUACUUCCACUGG 567
20 AAGAAACGAUGAAGGUGAUC 1
::.::: :::.:::::.:::
5 UUUUUUACUAUUUCCAUUAG 24
21 AAAGAAACGAUGAAGGUGAUC 1
:::::::: : :::.:.::::
280 UUUCUUUGAUUCUUUCGCUAG 300
20 CCGUAUGUCCCUCGGUCCGU 1
:::.:::.::: :::.:::.
718 GGCGUACGGGGCGCCGGGCG 737
20 CCGUAUGUCCCUCGGUCCGU 1
::: :::::::: ::::::
664 GGCCUACAGGGACCCAGGCU 683
20 CUUUGAGUCCUACCUAUCGC 1
:.:::::: :::::: ::::
42 GGAACUCAAGAUGGACAGCG 61
20 CUUUCGCGAGAAUCAAGUCA 1
::..:.: ::::::::.:::
31 GAGGGUGAUCUUAGUUUAGU 50
Expectation
2.5
2.5
2.5
2.5
2.5
3
3
3
3
3
miRNA
EY666355
Chromosome chr4 scaffold_6;Vitis vinifera
Xso-M005
EY702275
CV712967
Solute carrier family 2
facilitated glucose transporter member
10;Mus musculus
Target
miRNA
Target
miRNA
Os10g0474300 protein; Oryza sativa Japonica Group
Target
miRNA
TC10182
Peroxidase; Eucalyptus globulus subsp.
Target
miRNA
Xso-M006
EY652506
Peroxidase precursor;Spinacia oleracea
Target
miRNA
TC3386
Elongation factor 1-gamma; Prunus avium
Target
miRNA
EY667637
Isoform 2 of Q9FPT1; Arabidopsis thaliana
Target
miRNA
EY720265
Chromosome chr18 scaffold_1;Vitis vinifera
Target
miRNA
Xso-M007a-b
EY726040
ATP sulfurylase; Arabidopsis thaliana
Target
miRNA
EY674223
ATP sulfurylase; Arabidopsis thaliana
Target
miRNA
EY667140
ATP sulfurylase;Arabidopsis thaliana
Target
20 UAGCUACUUGGCGACGGAGG 1
::::.::::.:: :::::.:
132 AUCGGUGAAUCGAUGCCUUC 151
20 UAGCUACUUGGCGACGGAGG 1
:: ::: :::.::::::::.
566 AUAGAUCAACUGCUGCCUCU 585
21 GUCCCGUUGAGAGGAAACCGU 1
:::::::::::::::::::::
400 CAGGGCAACUCUCCUUUGGCA 420
21 GUCCCGUUGAGAGGAAACCGU 1
..::::::: .:.::::::::
33 UGGGGCAACGUUUCUUUGGCA 53
21 GUCCCGUUGAGAGGAAACCGU 1
..::::::: .:.::::::::
556 UGGGGCAACGUUUCUUUGGCA 576
20 UCCCGUUGAGAGGAAACCGU 1
::::: ::::::::::::.
901 AGGGCUACUCUCCUUUGGUC 920
21 CUCAAGGGGGUUUGUGAAGUC 1
::::::::::::::: :::.:
683 GAGUUCCCCCAAACAAUUCGG 703
21 CUCAAGGGGGUUUGUGAAGUC 1
::::::.::::: :::::::
244 GAGUUCUCCCAAUCACUUCAA 264
21 CUCAAGGGGGUUUGUGAAGUC 1
:::::::.:::::: :::::
344 GAGUUCCUCCAAACUCUUCAU 364
21 CUCAAGGGGGUUUGUGAAGUC 1
:::::::.:::::: :::::
387 GAGUUCCUCCAAACUCUUCAU 407
21 CUCAAGGGGGUUUGUGAAGUC 1
:::::::.:::::: :::::
343 GAGUUCCUCCAAACUCUUCAU 363
2.5
3
0
2.5
2.5
2.5
2
2.5
3
3
3
miRNA
EY743022
ATP sulfurylase; Arabidopsis thaliana
Target
miRNA
TC7183
ATP sulfurylase;Arabidopsis thaliana
Target
miRNA
EY709836
ATP sulfurylase;Arabidopsis thaliana
Target
miRNA
EY658203
TBC1 domain family
member 25;Rattus norvegicus
Target
miRNA
TC25886
ATP sulfurylase; Arabidopsis thaliana
Target
miRNA
TC5775
ATP sulfurylase precursor;Brassica juncea
Target
miRNA
EY685189
Aldehyde dehydrogenase 22A1 precursor;Arabidopsis thaliana
Target
miRNA
Xso-M008a-b
EY694690
CBL-interacting protein kinase 1;Populus trichocarpa
Target
miRNA
EY658032
Chromosome chr8 scaffold_29; Vitis vinifera
Target
miRNA
miR160a-b
EY717682
Chromosome chr12 scaffold_36; Vitis vinifera
Target
miRNA
EY730974
Chromosome chr19 scaffold_66; Vitis vinifera
Target
21 CUCAAGGGGGUUUGUGAAGUC 1
:::::::.:::::: :::::
369 GAGUUCCUCCAAACUCUUCAU 389
21 CUCAAGGGGGUUUGUGAAGUC 1
:::::::.:::::: :::::
366 GAGUUCCUCCAAACUCUUCAU 386
21 CUCAAGGGGGUUUGUGAAGUC 1
:::::::.:::::: :::::
310 GAGUUCCUCCAAACUCUUCAU 330
21 CUCAAGGGGGUUUGUGAAGUC 1
::::::.::::: :::::::
141 GAGUUCUCCCAAUCACUUCAA 161
21 CUCAAGGGGGUUUGUGAAGUC 1
:::::::.:::::: :::::
544 GAGUUCCUCCAAACUCUUCAU 564
21 CUCAAGGGGGUUUGUGAAGUC 1
:::::::.:::::: :::::
340 GAGUUCCUCCAAACUCUUCAU 360
21 CUCAAGGGGGUUUGUGAAGUC 1
:: :::::: ::::::::::
476 GACUUCCCCAAAACACUUCAA 496
21 GGAGCUCGGUCUGUUGUAAGG 1
.::: ::..::: ::::::::
572 UCUCAAGUUAGAAAACAUUCC 592
21 AUACGUACCGAGGAGUAUGCG 1
::::.:::::::: :::.::.
426 UAUGUAUGGCUCCGCAUGCGU 446
20 UACGUACCGAGGAGUAUGCG 1
.:::::::::::::::..:
64 GUGCAUGGCUCCUCAUGUGG 83
20 UACGUACCGAGGAGUAUGCG 1
::::::::::: ::::::::
377 AUGCAUGGCUC-UCAUACGC 395
3
3
3
2.5
3
3
3
3
2.5
2.5
2
miRNA
EY704656
ELIP; Brassica rapa subsp. pekinensis
Target
miRNA
miR162
TC9460
Chromosome chr8 scaffold_23; Vitis vinifera
Target
miRNA
TC3550
Chromosome chr13 scaffold_45; Vitis vinifera
Target
miRNA
EY665955
52O08_11;Brassica rapa subsp. pekinensis
Target
miRNA
miR164a-b
EY692154
Chromosome chr3 scaffold_8; Vitis vinifera
Target
miRNA
EY662901
Tocopherol cyclase;Eucalyptus gunnii
Target
miRNA
EY737911
Chromosome chr6 scaffold_3; Vitis vinifera
Target
miRNA
miR166a-f
EY708619
Aldo/keto reductase AKR; Manihot esculenta
Target
miRNA
miR166g
EY737911
Chromosome chr6 scaffold_3; Vitis vinifera
Target
miRNA
TC17305
Chromosome chr18 scaffold_1; Vitis vinifera
Target
miRNA
miR167a-b
EY752486
Geranyl diphosphate synthase small subunit;Antirrhinum majus
Target
20 UACGUACCGAGGAGUAUGCG 1
: :::: ::::.:::::.::
804 ACGCAUAGCUCUUCAUAUGC 823
21 GACCUACGUCUCCAAAUAGCU 1
.::::::::::: :::::. :
808 UUGGAUGCAGAGCUUUAUUAA 828
20 CGUGCACGGGACGAAGAGGU 1
:::: :::.::::::.::::
1182 GCACAUGCUCUGCUUUUCCA 1201
20 CGUGCACGGGACGAAGAGGU 1
::::::. .::::::::::
511 CCACGUGUAUUGCUUCUCCA 530
20 CGUGCACGGGACGAAGAGGU 1
::.::::::: :::.::::
794 GCGCGUGCCCCCCUUUUCCA 813
20 CGUGCACGGGACGAAGAGGU 1
::::: :.::: .:::::::
652 GCACGAGUCCUUUUUCUCCA 671
20 CCCUUACUUCGGACCAGGCU 1
::.:::::::::::::::.
343 UGGGAUGAAGCCUGGUCCGG 362
20 CCCUUACUUCGGACCAGGCU 1
:::::::.: . ::::::::
767 GGGAAUGGACUAUGGUCCGA 786
21 GCCCUUACUUCGGACCAGGCU 1
: ::.:::::::::::::::.
342 CUGGGAUGAAGCCUGGUCCGG 362
20 UCUAGUACGACCGUCGAAGU 1
::: : ::.:::.:::::::
544 AGACCCUGUUGGUAGCUUCA 563
20 UCUAGUACGACCGUCGAAGU 1
: .::::::: ::::::::.
238 ACGUCAUGCUUGCAGCUUCG 257
3
3
2
3
3
3
2
3
2
3
3
miRNA
DN620810
Chromosome chr19 scaffold_111; Vitis vinifera
Target
miRNA
CK935773
Transposase; Victivallis vadensis ATCC BAA-548
Target
miRNA
EY733102
LigA; Methylobacterium sp. 4-46
Target
miRNA
EY733264
Glyoxal or galactose oxidase; Chlamydomonas reinhardtii
miR390
EY674848
EY666298
HSP70 class molecular chaperones involved in cell
morphogenesis;Methanopyrus kandleri
Target
miRNA
Target
miRNA
Chromosome chr7 scaffold_44; Vitis vinifera
Target
miRNA
TC25463
Os08g0229300 protein;Oryza sativa Japonica Group
Target
miRNA
EY667637
Isoform 2 of Q9FPT1; Arabidopsis thaliana
Target
miRNA
EY720265
Chromosome chr18 scaffold_1; Vitis vinifera
Target
miRNA
miR395a-b
EY726040
ATP sulfurylase;Arabidopsis thaliana
Target
miRNA
EY674223
ATP sulfurylase; Arabidopsis thaliana
Target
20 UCUAGUACGACCGUCGAAGU 1
::::.::::: : ::.::::
265 AGAUUAUGCUUGGAGUUUCA 284
21 CCGCGAUAGGGAGGACUCGAA 1
:::: ::::.:::::::::::
315 GGCGAUAUCUCUCCUGAGCUU 335
21 CCGCGAUAGGGAGGACUCGAA 1
::.:::::::. :::::::::
170 GGUGCUAUCCUACCUGAGCUU 190
21 CCGCGAUAGGGAGGACUCGAA 1
::.:::::::. :::::::::
176 GGUGCUAUCCUACCUGAGCUU 196
21 CCGCGAUAGGGAGGACUCGAA 1
::.:::::::. :::::::::
320 GGUGCUAUCCUACCUGAGCUU 340
21 CCGCGAUAGGGAGGACUCGAA 1
::: ::::::::.:::: :::
10 GGCACUAUCCCUUCUGAACUU 30
20 CGCGAUAGGGAGGACUCGAA 1
:::: ::.::::::::.::
366 ACGCUUUCUCUCCUGAGUUU 385
21 CUCAAGGGGGUUUGUGAAGUC 1
::::::::::::::: :::.:
683 GAGUUCCCCCAAACAAUUCGG 703
21 CUCAAGGGGGUUUGUGAAGUC 1
::::::.::::: :::::::
244 GAGUUCUCCCAAUCACUUCAA 264
21 CUCAAGGGGGUUUGUGAAGUC 1
:::::::.:::::: :::::
344 GAGUUCCUCCAAACUCUUCAU 364
21 CUCAAGGGGGUUUGUGAAGUC 1
:::::::.:::::: :::::
387 GAGUUCCUCCAAACUCUUCAU 407
3
1.5
2
2
2
3
3
2
2.5
3
3
miRNA
EY667140
ATP sulfurylase;Arabidopsis thaliana
Target
miRNA
EY743022
ATP sulfurylase; Arabidopsis thaliana
Target
miRNA
EY712026
Chromosome chr18 scaffold_1; Vitis vinifera
Target
miRNA
TC7183
ATP sulfurylase; Arabidopsis thaliana
Target
miRNA
EY709836
ATP sulfurylase; Arabidopsis thaliana
Target
miRNA
EY658203
TBC1 domain family
member 25; Rattus norvegicus
Target
miRNA
TC25886
ATP sulfurylase; Arabidopsis thaliana
Target
miRNA
TC5775
ATP sulfurylase precursor; Brassica juncea
Target
miRNA
DY305609
Chromosome chr6 scaffold_305; Vitis vinifera
Target
miRNA
EY685189
Aldehyde dehydrogenase 22A1 precursor;Arabidopsis thaliana
Target
miRNA
EY723539
Chromosome undetermined scaffold_144; Vitis vinifera
Target
21 CUCAAGGGGGUUUGUGAAGUC 1
:::::::.:::::: :::::
343 GAGUUCCUCCAAACUCUUCAU 363
21 CUCAAGGGGGUUUGUGAAGUC 1
:::::::.:::::: :::::
369 GAGUUCCUCCAAACUCUUCAU 389
21 CUCAAGGGGGUUUGUGAAGUC 1
::::::.::::: :::::::
256 GAGUUCUCCCAAUCACUUCAA 276
21 CUCAAGGGGGUUUGUGAAGUC 1
:::::::.:::::: :::::
366 GAGUUCCUCCAAACUCUUCAU 386
21 CUCAAGGGGGUUUGUGAAGUC 1
:::::::.:::::: :::::
310 GAGUUCCUCCAAACUCUUCAU 330
21 CUCAAGGGGGUUUGUGAAGUC 1
::::::.::::: :::::::
141 GAGUUCUCCCAAUCACUUCAA 161
21 CUCAAGGGGGUUUGUGAAGUC 1
:::::::.:::::: :::::
544 GAGUUCCUCCAAACUCUUCAU 564
21 CUCAAGGGGGUUUGUGAAGUC 1
:::::::.:::::: :::::
340 GAGUUCCUCCAAACUCUUCAU 360
20 UCAAGGGGGUUUGUGAAGUC 1
::::.:::.::::::::.:
1036 AGUUUCCCUAAACACUUUAA 1055
21 CUCAAGGGGGUUUGUGAAGUC 1
:: :::::: ::::::::::
476 GACUUCCCCAAAACACUUCAA 496
20 UCAAGGGGGUUUGUGAAGUC 1
:::::..::: :..::::::
392 AGUUCUUCCACAUGCUUCAG 411
3
3
2.5
3
3
2.5
3
3
2.5
3
3
miRNA
BQ623090
Chromosome chr6 scaffold_3; Vitis vinifera
Target
miRNA
EY733229
Cysteine protease CP1; Manihot esculenta
Target
miRNA
EY741800
Cysteine protease CP1; Manihot esculenta
Target
miRNA
EY738555
Cysteine protease Cp6; Actinidia deliciosa
Target
miRNA
EY741007
Cysteine protease Cp6; Actinidia deliciosa
Target
miRNA
miR396
EY667620
Cysteine protease Cp6;Actinidia deliciosa
Target
miRNA
EY709467
Cysteine protease CP1; Manihot esculenta
Target
miRNA
EY734592
Cysteine protease CP1;Manihot esculenta
Target
miRNA
EY739120
Cysteine protease CP1; Manihot esculenta
Target
miRNA
EY742107
Cysteine protease CP1; Manihot esculenta
Target
miRNA
DY305671
Cysteine proteinase; Elaeis guineensis
Target
21 UUCAAGUUCUUUCGACACCUU 1
.::::.:.::.::.:::::::
520 GAGUUUAGGAGAGUUGUGGAA 540
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
346 AAGAUCAAGGAAGCUGUGGGA 366
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
252 AAGAUCAAGGAAGCUGUGGGA 272
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
291 AAGAUCAAGGAAGCUGUGGGA 311
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
413 AAGAUCAAGGAAGCUGUGGGA 433
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
294 AAGAUCAAGGAAGCUGUGGGA 314
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
241 AAGAUCAAGGAAGCUGUGGGA 261
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
414 AAGAUCAAGGAAGCUGUGGGA 434
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
76 AAGAUCAAGGAAGCUGUGGGA 96
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
279 AAGAUCAAGGAAGCUGUGGGA 299
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
11 AAGAUCAAGGAAGCUGUGGGA 31
2
2
2
2
2
2
2
2
2
2
2
EY702276
EY722391
Oil palm polygalacturonase allergen PEST472; Elaeis
guineensis
miRNA
Target
miRNA
Cysteine protease Cp6;Actinidia deliciosa
Target
miRNA
EY706820
Cysteine protease CP1; Manihot esculenta
Target
miRNA
EY670024
Cysteine protease CP1;Manihot esculenta
Target
miRNA
TC8158
Cysteine protease Cp6; Actinidia deliciosa
Target
miRNA
EY676947
Cysteine protease CP1; Manihot esculenta
Target
miRNA
TC5144
Cysteine protease CP1; Manihot esculenta
Target
miRNA
TC941
Cysteine protease Cp6;Actinidia deliciosa
Target
miRNA
EY750148
Cysteine protease CP1; Manihot esculenta
Target
miRNA
TC5632
TC10607
Cysteine protease Cp6; Actinidia deliciosa
Oil palm polygalacturonase allergen PEST472; Elaeis
Target
miRNA
guineensis
Target
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
160 AAGAUCAAGGAAGCUGUGGGA 180
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
299 AAGAUCAAGGAAGCUGUGGGA 319
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
275 AAGAUCAAGGAAGCUGUGGGA 295
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
401 AAGAUCAAGGAAGCUGUGGGA 421
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
331 AAGAUCAAGGAAGCUGUGGGA 351
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
258 AAGAUCAAGGAAGCUGUGGGA 278
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
361 AAGAUCAAGGAAGCUGUGGGA 381
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
518 AAGAUCAAGGAAGCUGUGGGA 538
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
110 AAGAUCAAGGAAGCUGUGGGA 130
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
315 AAGAUCAAGGAAGCUGUGGGA 335
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
114 AAGAUCAAGGAAGCUGUGGGA 134
2
2
2
2
2
2
2
2
2
2
2
miRNA
EY657498
Cysteine protease Cp6; Actinidia deliciosa
Target
miRNA
EY657979
Cysteine protease CP1; Manihot esculenta
Target
miRNA
CV712967
Os10g0474300 protein; Oryza sativa Japonica Group
Target
miRNA
TC10182
Peroxidase; Eucalyptus globulus subsp. globulus
Target
miRNA
EY652506
Peroxidase precursor; Spinacia oleracea
Target
miRNA
miR399
EY666268
Chromosome chr8 scaffold_34; Vitis vinifera
Target
miRNA
TC3386
Elongation factor 1-gamma; Prunus avium
Target
miRNA
EY714209
Chromosome chr6 scaffold_3; Vitis vinifera
Target
miRNA
TC10597
Chromosome chr2 scaffold_187; Vitis vinifera
Target
miRNA
miR403
TC12064
miR3954a-d
EY666059
PHAP2B protein;Petunia x hybrida
Translation elongation and release factors; Thermoanaerobacter
Target
miRNA
tengcongensis
Target
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
319 AAGAUCAAGGAAGCUGUGGGA 339
21 UUCAAGUUCUUUCGACACCUU 1
::: :::::.:::::::::.:
401 AAGAUCAAGGAAGCUGUGGGA 421
21 GUCCCGUUGAGAGGAAACCGU 1
:::::::::::::::::::::
400 CAGGGCAACUCUCCUUUGGCA 420
21 GUCCCGUUGAGAGGAAACCGU 1
..::::::: .:.::::::::
33 UGGGGCAACGUUUCUUUGGCA 53
21 GUCCCGUUGAGAGGAAACCGU 1
..::::::: .:.::::::::
556 UGGGGCAACGUUUCUUUGGCA 576
20 UCCCGUUGAGAGGAAACCGU 1
:::.:.::::.::::::.:
790 UGGGUAGCUCUUCUUUGGUA 809
20 UCCCGUUGAGAGGAAACCGU 1
::::: ::::::::::::.
901 AGGGCUACUCUCCUUUGGUC 920
21 GUCCCGUUGAGAGGAAACCGU 1
:: ::::.:: ::.:::::::
162 CAUGGCAGCUAUCUUUUGGCA 182
20 CUCAAACACGCACUUAGAUU 1
::::::::: ::::::.:..
340 GAGUUUGUGAGUGAAUUUGG 359
20 CUCAAACACGCACUUAGAUU 1
::::::::.:: :::.:::
1953 AAGUUUGUGUGUUAAUUUAA 1972
21 ACUGGCACUAAAGAGACAGGU 1
:::::::::::::::::::::
187 UGACCGUGAUUUCUCUGUCCA 207
2
2
0
2.5
2.5
3
2.5
3
2.5
3
0
miRNA
EY672708
Kunitz inhibitor like protein 1 precursor; Drosophila virilis
Target
miRNA
TC24755
TC25032
TC9614
TC20811
EY674210
EY658225
Predicted protein; Botryotinia fuckeliana B05.10
Pyruvate ferredoxin/flavodoxin oxidoreductase;
Staphylothermus marinus F1
Pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit;
Staphylothermus marinus F1
Target
miRNA
Target
miRNA
Target
miRNA
Chromosome chr8 scaffold_29; Vitis vinifera
Hydroxyproline-rich glycoprotein DZ-HRGP precursor; Volvox
carteri f. nagariensis
Target
miRNA
Target
miRNA
AGAP008905-PA; Anopheles gambiae str. PEST
Target
miRNA
EY658373
Chromosome chr8 scaffold_29; Vitis vinifera
Target
miRNA
EY657044
No apical meristem protein; Oryza sativa Japonica Group
Target
miRNA
EY744065
Precollagen-NG; Mytilus galloprovincialis
Target
miRNA
EY741915
versican; Mus musculus
Target
21 ACUGGCACUAAAGAGACAGGU
:::::::::::::::::::::
118 UGACCGUGAUUUCUCUGUCCA
21 ACUGGCACUAAAGAGACAGGU
::::: :::::::::::::::
119 UGACCCUGAUUUCUCUGUCCA
21 ACUGGCACUAAAGAGACAGGU
::::: :::::::::::::::
121 UGACCCUGAUUUCUCUGUCCA
21 ACUGGCACUAAAGAGACAGGU
::::: :::::::::::::::
126 UGACCCUGAUUUCUCUGUCCA
21 ACUGGCACUAAAGAGACAGGU
::::: :::::::: ::::::
140 UGACCCUGAUUUCUGUGUCCA
21 ACUGGCACUAAAGAGACAGGU
::::: :::::::: ::::::
123 UGACCCUGAUUUCUAUGUCCA
21 ACUGGCACUAAAGAGACAGGU
::::: :::::::: ::::::
125 UGACCCUGAUUUCUAUGUCCA
21 ACUGGCACUAAAGAGACAGGU
::::: :::::::: ::::::
125 UGACCCUGAUUUCUAUGUCCA
21 ACUGGCACUAAAGAGACAGGU
::::: ::.:::.::::::.:
128 UGACCCUGGUUUUUCUGUCUA
21 ACUGGCACUAAAGAGACAGGU
::::: :::::::: ::::::
125 UGACCCUGAUUUCUAUGUCCA
21 ACUGGCACUAAAGAGACAGGU
::::: :::::::: ::::::
133 UGACCCUGAUUUCUAUGUCCA
1
0
138
1
1
139
1
1
141
1
1
146
1
2.5
160
1
2.5
143
1
2.5
145
1
2.5
145
1
2.5
148
1
2.5
145
1
2.5
153
miRNA
EY666286
Chromosome chr8 scaffold_29; Vitis vinifera
Target
miRNA
EY653298
NAC domain protein NAC1; Phaseolus vulgaris
Target
miRNA
EY736252
TC19272
TC12300
Chromosome 2 SCAF14997; Tetraodon nigroviridis
Squamosa promoter-binding-like protein 2; Arabidopsis
thaliana
Target
miRNA
Target
miRNA
Chromosome chr1 scaffold_136; Vitis vinifera
Target
miRNA
TC14021
Chromosome chr11 scaffold_14; Vitis vinifera
Target
miRNA
TC6166
Chromosome chr8 scaffold_34; Vitis vinifera
Target
miRNA
miR156
TC14277
Promoter binding protein; Gossypium hirsutum
Target
miRNA
EY652288
Squamosa promoter-binding-like protein 3; Oryza sativa
Target
miRNA
TC7461
Chromosome chr15 scaffold_19; Vitis vinifera
Target
miRNA
EY707623
Chromosome chr1 scaffold_136; Vitis vinifera
Target
21 ACUGGCACUAAAGAGACAGGU 1
::::: :::::::: ::::::
123 UGACCCUGAUUUCUAUGUCCA 143
21 ACUGGCACUAAAGAGACAGGU 1
::::: ::.:::.::::::.:
140 UGACCCUGGUUUUUCUGUCUA 160
21 ACUGGCACUAAAGAGACAGGU 1
::::: :::::::: ::::::
134 UGACCCUGAUUUCUAUGUCCA 154
20 CACGAGUGAGAGAAGACAGU 1
:::::: :::::::::::::
1407 GUGCUCUCUCUCUUCUGUCA 1426
20 CACGAGUGAGAGAAGACAGU 1
:::::: :::::::::::::
1041 GUGCUCUCUCUCUUCUGUCA 1060
20 CACGAGUGAGAGAAGACAGU 1
:::::: :::::::::::::
668 GUGCUCUCUCUCUUCUGUCA 687
20 CACGAGUGAGAGAAGACAGU 1
:::::: :::::::::::::
768 GUGCUCUCUCUCUUCUGUCA 787
20 CACGAGUGAGAGAAGACAGU 1
:::::: :::::::::::::
256 GUGCUCUCUCUCUUCUGUCA 275
20 CACGAGUGAGAGAAGACAGU 1
:::::: :::::::::::::
441 GUGCUCUCUCUCUUCUGUCA 460
20 CACGAGUGAGAGAAGACAGU 1
:::::: :::::::::::::
159 GUGCUCUCUCUCUUCUGUCA 178
20 CACGAGUGAGAGAAGACAGU 1
:::::: :::::::::::::
547 GUGCUCUCUCUCUUCUGUCA 566
2.5
2.5
2.5
1
1
1
1
1
1
1
1
miRNA
EY718495
Promoter binding protein; Gossypium hirsutum
Target
miRNA
EY719206
Chromosome chr8 scaffold_34; Vitis vinifera
Target
miRNA
EY684259
Promoter binding protein; Gossypium hirsutum
Target
miRNA
CK665702
Chromosome chr15 scaffold_19; Vitis vinifera
Target
miRNA
TC25164
TC10142
TC14957
EY687746
TC3600
Chromosome chr12 scaffold_18; Vitis vinifera
Molybdenum cofactor guanylyltransferase; Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)
Target
miRNA
Target
miRNA
Chromosome chr12 scaffold_18; Vitis vinifera
Diguanylate cyclase/phosphodiesterase; Methylibium
petroleiphilum PM1
Target
miRNA
Target
miRNA
SBP transcription factor; Gossypium hirsutum
Target
miRNA
EY752996
Cytoplasmic ribosomal protein S14; Brassica napus
Target
miRNA
TC7955
TGA transcription factor 2; Populus tremula x Populus alba
Target
20 CACGAGUGAGAGAAGACAGU
:::::: :::::::::::::
135 GUGCUCUCUCUCUUCUGUCA
20 CACGAGUGAGAGAAGACAGU
:::::: :::::::::::::
217 GUGCUCUCUCUCUUCUGUCA
20 CACGAGUGAGAGAAGACAGU
:::::: :::::::::::::
285 GUGCUCUCUCUCUUCUGUCA
20 CACGAGUGAGAGAAGACAGU
:::::: :::::::::::::
202 GUGCUCUCUCUCUUCUGUCA
20 CACGAGUGAGAGAAGACAGU
::::: :::::::::::::
734 AUGCUCUCUCUCUUCUGUCA
20 CACGAGUGAGAGAAGACAGU
::::: :::::::::::::
111 AUGCUCUCUCUCUUCUGUCA
20 CACGAGUGAGAGAAGACAGU
::::: :::::::::::::
702 AUGCUCUCUCUCUUCUGUCA
20 CACGAGUGAGAGAAGACAGU
:::::: ::::::::::::
461 GUGCUCUCUCUCUUCUGUCU
20 CACGAGUGAGAGAAGACAGU
::::: :::::::::::::
540 AUGCUCCCUCUCUUCUGUCA
20 CACGAGUGAGAGAAGACAGU
:: .::::::::::::::.:
458 GUUUUCACUCUCUUCUGUUA
20 CACGAGUGAGAGAAGACAGU
:::.:::.:.::::::: ::
951 GUGUUCAUUUUCUUCUGGCA
1
1
154
1
1
236
1
1
304
1
1
221
1
2
753
1
2
130
1
2
721
1
2
480
1
2
559
1
2
477
1
3
970
miRNA
TC15642
Chromosome chr1 scaffold_5; Vitis vinifera
EY708584
Chromosome 5 SCAF15026; Tetraodon nigroviridis
TC4638
Chromosome chr11 scaffold_56; Vitis vinifera
miR159
EY665527
miR169
Pyruvate, phosphate dikinase, chloroplast precursor;
Mesembryanthemum crystallinum
EY690183
Subtilisin-like protease 3; Pneumocystis carinii
TC4367
Chromosome chr6 scaffold_3; Vitis vinifera
EY736145
Chromosome undetermined scaffold_142; Vitis vinifera
DR909514
Chromosome chr9 scaffold_7; Vitis vinifera
TC15690
Chromosome chr9 scaffold_7; Vitis vinifera
EY656107
Chromosome chr18 scaffold_1; Vitis vinifera
EY649570
Chromosome chr18 scaffold_1; Vitis vinifera
20 CACGAGUGAGAGAAGACAGU 1
: :::: :::::::::::::
Target 531 GGGCUCUCUCUCUUCUGUCA 550
miRNA
20 CACGAGUGAGAGAAGACAGU 1
:::.:::.:.::::::: ::
Target 350 GUGUUCAUUUUCUUCUGGCA 369
miRNA
21 AUCUCGAGGGAAGUUAGGUUU 1
::: ::::.: :.::::::::
Target 803 UAGCGCUCUCCUUAAUCCAAA 823
miRNA
20 UCUCGAGGGAAGU-UAGGUUU 1
::::.:.:::::: :::::::
Target 353 AGAGUUUCCUUCAGAUCCAAA 373
miRNA
21 GGCCGUUCAGUAGGAACCGAC 1
::::::: ::::.:::::::
Target 224 CCGGCAAAUCAUUCUUGGCUU 244
miRNA
21 GGCCGUUCAGUAGGAACCGAC 1
::::::: ::::.:::::::
Target 631 CCGGCAAAUCAUUCUUGGCUU 651
miRNA
21 GGCCGUUCAGUAGGAACCGAC 1
::::..::::.::::::: ::
Target 684 CCGGUGAGUCGUCCUUGGGUG 704
miRNA
21 GGCCGUUCAGUAGGAACCGAC 1
..:: :::::::::::::::
Target 295 UUGGGAAGUCAUCCUUGGCUC 315
miRNA
21 GGCCGUUCAGUAGGAACCGAC 1
..:: :::::::::::::::
Target 553 UUGGGAAGUCAUCCUUGGCUC 573
miRNA
21 GGCCGUUCAGUAGGAACCGAC 1
::::. ::::::: :::::::
Target
9 CCGGUCAGUCAUCAUUGGCUG 29
miRNA
20 GCCGUUCAGUAGGAACCGAC 1
::::::: :: ::::::.::
Target 272 CGGCAAGCCAACCUUGGUUG 291
2
3
3
3
2.5
2.5
3
2.5
2.5
2.5
2.5
miRNA
TC19143
Chromosome chr15 scaffold_37; Vitis vinifera
Target
miRNA
TC11302
Chromosome chr4 scaffold_32; Vitis vinifera
Target
miRNA
EY676677
Chromosome chr4 scaffold_32; Vitis vinifera
Target
miRNA
EY755241
Chromosome chr4 scaffold_32; Vitis vinifera
Target
miRNA
miR171
TC16049
Chromosome chr14 scaffold_27; Vitis vinifera
Target
miRNA
EY669925
Chromosome chr14 scaffold_27; Vitis vinifera
Target
miRNA
EY665511
nodulin MtN3 family protein; Arabidopsis thaliana
Target
miRNA
EY663107
Chromosome chr14 scaffold_9; Vitis vinifera
Target
miRNA
TC16431
Chromosome chr6 scaffold_3; Vitis vinifera
Target
miRNA
miR172
EY682577
Chromosome chr6 scaffold_3; Vitis vinifera
Target
miRNA
EY688891
Envelope glycoprotein; Human immunodeficiency virus 1
Target
21 CUAUAACCGUGCCGAGUUAGU 1
:::::::::.::::::: :::
1003 GAUAUUGGCGCGGCUCANUCA 1023
21 CUAUAACCGUGCCGAGUUAGU 1
::::::::: :: ::::::::
722 GAUAUUGGCCCGCCUCAAUCA 742
21 CUAUAACCGUGCCGAGUUAGU 1
::::::::: :: ::::::::
29 GAUAUUGGCCCGCCUCAAUCA 49
21 CUAUAACCGUGCCGAGUUAGU 1
::::::::: :: ::::::::
274 GAUAUUGGCCCGCCUCAAUCA 294
20 UAUAACCGUGCCGAGUUAGU 1
: :::::::::::::::.:
630 UUCUUGGCACGGCUCAAUUA 649
20 UAUAACCGUGCCGAGUUAGU 1
: :::::::::::::::.:
88 UUCUUGGCACGGCUCAAUUA 107
20 UAUAACCGUGCCGAGUUAGU 1
::::::::::: :::: :.:
410 AUAUUGGCACGUCUCAUUUA 429
20 UAUAACCGUGCCGAGUUAGU 1
: :::::.:::::::::.:
718 UUCUUGGCGCGGCUCAAUUA 737
21 UACGUCGUAGUAGUUCUAAGA 1
.:::::::::::::.::::::
409 GUGCAGCAUCAUCAGGAUUCU 429
21 UACGUCGUAGUAGUUCUAAGA 1
.:::::::::::::::::::
603 GUGCAGCAUCAUCAAGAUUCC 623
21 UACGUCGUAGUAGUUCUAAGA 1
::::::::::::::.:::::
122 AUGCAGCAUCAUCAGGAUUCC 142
2
2
2
2
2.5
2.5
3
3
0.5
1
1.5
miRNA
TC7810
Chromosome chr6 scaffold_3; Vitis vinifera
Target
miRNA
TC15666
Chromosome chr6 scaffold_3; Vitis vinifera
Target
miRNA
TC12064
PHAP2B protein; Petunia x hybrida
Target
miRNA
TC15635
Chromosome chr7 scaffold_20; Vitis vinifera
Target
miRNA
TC14205
EY683813
EY709164
Transcription factor AHAP2; Malus x domestica
VWA containing CoxE-like; Anaeromyxobacter dehalogenans
2CP-C
Target
miRNA
Target
miRNA
Matrix metalloproteinase; Volvox carteri f. nagariensis
Target
miRNA
miR319
TC20990
Membrane associated protein; Arabidopsis thaliana
Target
miRNA
TC4916
Chromosome chr14 scaffold_9; Vitis vinifera
Target
miRNA
miR393
TC1009
Chromosome chr14 scaffold_9; Vitis vinifera
Target
miRNA
miR394
TC13219
Chromosome chr1 scaffold_136; Vitis vinifera
Target
21 UACGUCGUAGUAGUUCUAAGA 1
.:::::::::::::.:::::
565 GUGCAGCAUCAUCAGGAUUCC 585
21 UACGUCGUAGUAGUUCUAAGA 1
.:::::::::::::.:::::
725 GUGCAGCAUCAUCAGGAUUCC 745
20 ACGUCGUAGUAGUUCUAAGA 1
:::::::::::::.:::::
1539 UGCAGCAUCAUCAGGAUUCC 1558
20 ACGUCGUAGUAGUUCUAAGA 1
:::::::::::::.:::::
711 UGCAGCAUCAUCAGGAUUCC 730
20 ACGUCGUAGUAGUUCUAAGA 1
:::::::::::::.:::::
501 UGCAGCAUCAUCAGGAUUCC 520
21 UACGUCGUAGUAGUUCUAAGA 1
:::: ::::.. :::::::::
9 AUGCUGCAUUGCCAAGAUUCU 29
21 UACGUCGUAGUAGUUCUAAGA 1
.::::::::: :. :::::.:
906 GUGCAGCAUCUUUCAGAUUUU 926
20 CCUACUUACUCAGCCGUCGA 1
:::::::::::.::.::.:
740 AGAUGAAUGAGUUGGUAGUU 759
20 AGUUACGCUAGGGAAACCUU 1
::::::::::::::::::
444 ACAAUGCGAUCCCUUUGGAU 463
20 AGUUACGCUAGGGAAACCUU 1
:::::: :::::::::::
1191 ACAAUGCCAUCCCUUUGGAU 1210
20 CCUCCACCUGUCUUACGGUU 1
:::::: :::::::::::::
430 GGAGGUUGACAGAAUGCCAA 449
1.5
1.5
1.5
1.5
1.5
3
3
2.5
2
3
1
miRNA
EY658376
Chromosome chr1 scaffold_136; Vitis vinifera
EY652491
Inositol-3-phosphate synthase; Citrus x paradisi
TC17914
Chromosome chr13 scaffold_48; Vitis vinifera
EY747464
Chromosome chr13 scaffold_48; Vitis vinifera
DR909212
Taste receptor type 1 member 2b; Danio rerio
TC3269
Chromosome chr8 scaffold_23; Vitis vinifera
EY730868
Chromosome chr9 scaffold_7; Vitis vinifera
EY725562
Chromosome chr9 scaffold_7; Vitis vinifera
TC15627
Chromosome chr9 scaffold_7; Vitis vinifera
EY725569
Chromosome chr9 scaffold_7; Vitis vinifera
EY727461
Chromosome chr18 scaffold_24; Vitis vinifera
miR397
20 CCUCCACCUGUCUUACGGUU 1
:::::: :::::::::::::
Target 269 GGAGGUUGACAGAAUGCCAA 288
miRNA
20 CCUCCACCUGUCUUACGGUU 1
::::::::.::.:::.:.:
Target 892 CGAGGUGGAUAGGAUGUCGA 911
miRNA
20 CCUCCACCUGUCUUACGGUU 1
::: ::::::::..:::::
Target 642 GGAAGUGGACAGGGUGCCAC 661
miRNA
20 CCUCCACCUGUCUUACGGUU 1
:::: ::::::::: :.:::
Target 120 GGAGUUGGACAGAAGGUCAA 139
miRNA
20 CCUCCACCUGUCUUACGGUU 1
:::::: ::: ::::::::
Target
53 GGAGGUCUACAAAAUGCCAA 72
miRNA
21 GUAGUUGCGACGUGAGUUACU 1
.:::::::::::::::::: :
Target
771 UAUCAACGCUGCACUCAAUAA 791
miRNA
21 GUAGUUGCGACGUGAGUUACU 1
:::..:::.::..::.:::::
Target
288 CAUUGACGUUGUGCUUAAUGA 308
miRNA
21 GUAGUUGCGACGUGAGUUACU 1
:::..:::.::..::.:::::
Target
185 CAUUGACGUUGUGCUUAAUGA 205
miRNA
21 GUAGUUGCGACGUGAGUUACU 1
:::..:::.::..::.:::::
Target
197 CAUUGACGUUGUGCUUAAUGA 217
miRNA
21 GUAGUUGCGACGUGAGUUACU 1
:::..:::.::..::.:::::
Target
162 CAUUGACGUUGUGCUUAAUGA 182
miRNA
21 GUAGUUGCGACGUGAGUUACU 1
::::::::. :::::::: ::
Target
162 CAUCAACGUGGCACUCAAAGA 182
1
3
3
3
3
1.5
3
3
3
3
3
miRNA
TC13341
EY679020
EY675884
Chromosome undetermined scaffold_296; Vitis vinifera
MscS Mechanosensitive ion channel precursor; Pelobacter
propionicus DSM 2379
Target
miRNA
Target
miRNA
Chromosome chr16 scaffold_86; Vitis vinifera
Target
miRNA
EY701787
Chromosome chr9 scaffold_7; Vitis vinifera
Target
miRNA
miR472
EY676181
Chromosome chr8 scaffold_23; Vitis vinifera
Target
miRNA
EY658047
Chromosome chr2 scaffold_112; Vitis vinifera
Target
miRNA
EY734357
Chromosome chr6 scaffold_3; Vitis vinifera
Target
miRNA
EY687716
Chromosome chr18 scaffold_59; Vitis vinifera
Target
miRNA
EY736446
Nucleoside diphosphate kinase; Vitis vinifera
Target
miRNA
miR473
EY699803
Chromosome chr5 scaffold_2; Vitis vinifera
Target
miRNA
TC6181
Chromosome chr1 scaffold_46; Vitis vinifera
Target
20 UAGUUGCGACGUGAGUUACU 1
:::..::::: ::::::::
529 UUCAGUGCUGCUCUCAAUGA 548
20 CAUACCCUCCACAACCUUUU 1
::::::.::::::::.:::
719 UUAUGGGGGGUGUUGGGAAA 738
21 CCAUACCCUCCACAACCUUUU 1
: ::::::.: ::::::::.:
419 GAUAUGGGGGCUGUUGGAAGA 439
21 CCAUACCCUCCACAACCUUUU 1
:: .::::.:: :::::::::
513 GGGGUGGGGGGAGUUGGAAAA 533
20 CAUACCCUCCACAACCUUUU 1
::::::.::: ::::.:::
639 AUAUGGGGGGUUUUGGGAAA 658
20 CAUACCCUCCACAACCUUUU 1
:: :::.::::::::.:::
849 UUAAGGGGGGUGUUGGGAAA 868
20 CAUACCCUCCACAACCUUUU 1
::.:::: :::::::: :::
531 GUGUGGGUGGUGUUGGUAAA 550
20 CAUACCCUCCACAACCUUUU 1
::. :::::: :::::::::
367 GUGAGGGAGGAGUUGGAAAA 386
20 CCUUCGGGAACUCCUUCUCA 1
:::::::::::: ::::::
763 GGAAGCCCUUGAAGAAGAGC 782
20 CCUUCGGGAACUCCUUCUCA 1
::::::..:: ::::::::
414 GGAAGCUUUUCAGGAAGAGG 433
20 CCUUCGGGAACUCCUUCUCA 1
::::: :::: ::::::::
322 AGAAGCACUUGUGGAAGAGU 341
3
2
3
3
3
3
3
2.5
2
3
3
miRNA
EY736446
Nucleoside diphosphate kinase; Vitis vinifera
Target
miRNA
miR477
EY699803
Chromosome chr5 scaffold_2; Vitis vinifera
Target
miRNA
EY755648
Chromosome chr2 scaffold_97; Vitis vinifera
Target
miRNA
TC24849
Chromosome chr1 scaffold_5; Vitis vinifera
Target
miRNA
miR479
TC22094
Chromosome chr11 scaffold_13; Vitis vinifera
Target
miRNA
EY711846
Chromosome chr18 scaffold_24; Vitis vinifera
Target
miRNA
EY701971
Heat shock protein DnaJ; Medicago truncatula
Target
miRNA
EY738950
Pyruvate dehydrogenase; Citrus x paradisi
Target
miRNA
miR482
CV885513
Chromosome undetermined scaffold_80; Vitis vinifera
Target
miRNA
CK933674
Chromosome undetermined scaffold_141; Vitis vinifera
Target
miRNA
TC15771
Chromosome undetermined scaffold_53; Vitis vinifera
Target
21 UCCUUCGGGAACUCCUUCUCA 1
.:::::::::::: ::::::
762 GGGAAGCCCUUGAAGAAGAGC 782
21 UCCUUCGGGAACUCCUUCUCA 1
:::::::..:: ::::::::
413 AGGAAGCUUUUCAGGAAGAGG 433
21 UCCU-UCGGGAACUCCUUCUCA 1
:::: :::::: ::::::::::
443 AGGACAGCCCUAGAGGAAGAGU 464
21 UUCUCGGCUUCGUUAUAGUGU 1
.:::::.:::: ::::::: :
1031 GAGAGCUGAAGAAAUAUCAGA 1051
22 CUUCUCGGCUUCGUUAUAGUGU 1
: .:::..:: ::.::::::::
666 GUGGAGUUGAUGCGAUAUCACA 687
22 CCGUACCCACCUUAUCCCUUCU 1
::::::::::: : ::::::::
369 GGCAUGGGUGGUACAGGGAAGA 390
22 CCGUACCCACCUUAUCCCUUCU 1
:::: ::::::.::.:::.:::
993 GGCAGGGGUGGGAUGGGGGAGA 1014
22 CCGUACCCACCUUAUCCCUUCU 1
::..:::: :::.:.:::::::
517 GGUGUGGGAGGAGUGGGGAAGA 538
22 CCGUACCCACCUUAUCCCUUCU 1
:: :::::::::.: :::::::
726 GGAAUGGGUGGAGUCGGGAAGA 747
22 CCGUACCCACCUUAUCCCUUCU 1
::.::::: :: ::::::::::
708 GGUAUGGGCGGUAUAGGGAAGA 729
22 CCGUACCCACCUUAUCCCUUCU 1
::.::::::::::: :: ::::
813 GGUAUGGGUGGAAUCGGAAAGA 834
2
3
3
3
3
2
2.5
3
2.5
2.5
3
miRNA
TC18127
IPP/DMAPP synthase; Stevia rebaudiana
Target
miRNA
EY727729
EY672414
EY691643
TC25550
Chromosome chr4 scaffold_6; Vitis vinifera
Peptidase S8 and S53, subtilisin, kexin, sedolisin precursor;
Methanospirillum hungatei JF-1
Integral membrane protein; Leeuwenhoekiella blandensis
MED217
Target
miRNA
Target
miRNA
Target
miRNA
Chromosome chr7 scaffold_42; Vitis vinifera
Target
miRNA
EY736857
Nucleolin; Gallus gallus
Target
Poliovirus receptor-related protein 1 precursor (Herpes virus
TC1082
miRNA
entry mediator C) (HveC) (Nectin-1) (Herpesvirus Ig-like
receptor) (HIgR) (CD111 antigen).;Xenopus tropicalis
Target
miRNA
EY740744
Chromosome chr2 scaffold_112; Vitis vinifera
Target
miRNA
miR530
TC531
Chromosome chr5 scaffold_67; Vitis vinifera
Target
miRNA
EY655921
Integrin beta; Nematostella vectensis
Target
miRNA
EY677528
Chromosome chr2 scaffold_112; Vitis vinifera
Target
22 CCGUACCCACCUUAUCCCUUCU 1
:::::::: ::.::.:::..::
1092 GGCAUGGGGGGGAUGGGGGGGA 1113
20 GUACCCACCUUAUCCCUUCU 1
::::::::::::::..::
689 UUUGGGUGGAAUAGGGGGGA 708
22 CCGUACCCACCUUAUCCCUUCU 1
::.::::::: :.:::::::::
51 GGUAUGGGUG-AGUAGGGAAGA 71
22 CCGUACCCACCUUAUCCCUUCU 1
::.::::::: :.:::::::::
35 GGUAUGGGUG-AGUAGGGAAGA 55
21 CGUACCCACCUUAUCCCUUCU 1
:..::: ::::.::::::::.
264 GUGUGGAUGGAGUAGGGAAGG 284
21 AGUCUACGUCCACGUUUACGU 1
::::.::::::::::::::::
217 UCAGGUGCAGGUGCAAAUGCA 237
21 AGUCUACGUCCACGUUUACGU 1
::::.::::::::::::::::
153 UCAGGUGCAGGUGCAAAUGCA 173
20 GUCUACGUCCACGUUUACGU 1
::::::::::::: ::::::
366 CAGAUGCAGGUGCCAAUGCA 385
20 GUCUACGUCCACGUUUACGU 1
::::::::: ::::.:::::
10 CAGAUGCAGAUGCAGAUGCA 29
21 AGUCUACGUCCACGUUUACGU 1
::: .:::: :::::::::::
182 UCAUGUGCAUGUGCAAAUGCA 202
20 GUCUACGUCCACGUUUACGU 1
:::::::: :::: ::::::
141 CAGAUGCAAGUGCCAAUGCA 160
3
3
3
3
3
0.5
0.5
1.5
1.5
2.5
2.5
miRNA
EY677028
Chromosome chr15 scaffold_37; Vitis vinifera
Target
miRNA
EY743746
Chromosome chr18 scaffold_1; Vitis vinifera
Target
miRNA
TC12148
Chromosome chr2 scaffold_112; Vitis vinifera
Target
miRNA
TC10085
Chromosome chr15 scaffold_37; Vitis vinifera
Target
miRNA
EY679643
TC12158
TC498
Coat protein; Tobacco streak virus
Mitochondrial serine hydroxymethyltransferase; Populus
tremuloides
Target
miRNA
Target
miRNA
SBP; Medicago truncatula
Target
miRNA
EY710511
Fasciclin-like arabinogalactan protein 19; Gossypium hirsutum
Target
miRNA
miR535
TC11784
Fasciclin-like arabinogalactan protein 19; Gossypium hirsutum
Target
miRNA
EY677181
Fasciclin-like arabinogalactan protein 19; Gossypium hirsutum
Target
miRNA
EY721100
Fasciclin-like arabinogalactan protein 19; Gossypium hirsutum
Target
20 GUCUACGUCCACGUUUACGU 1
:::::::: :::: ::::::
139 CAGAUGCAAGUGCCAAUGCA 158
21 AGUCUACGUCCACGUUUACGU 1
:::: ::::: :::::::::
199 UCAGUUGCAGUUGCAAAUGCU 219
20 GUCUACGUCCACGUUUACGU 1
:::::::: :::: ::::::
366 CAGAUGCAAGUGCCAAUGCA 385
20 GUCUACGUCCACGUUUACGU 1
:: .::::::::::..::::
173 CACGUGCAGGUGCAGGUGCA 192
20 GUCUACGUCCACGUUUACGU 1
::.::::: :::::.::::
222 AAGGUGCAGUUGCAAGUGCA 241
20 GUCUACGUCCACGUUUACGU 1
.:: :::::::::::.:::
723 UAGUUGCAGGUGCAAGUGCU 742
20 GCACGAGAGAGAGGAACAGU 1
.::::::::::::. :::::
918 UGUGCUCUCUCUCUCUGUCA 937
20 GCACGAGAGAGAGGAACAGU 1
:::::::::::::: :::.
315 CGUGCUCUCUCUCCAUGUUC 334
20 GCACGAGAGAGAGGAACAGU 1
:::::::::::::: :::.
190 CGUGCUCUCUCUCCAUGUUC 209
20 GCACGAGAGAGAGGAACAGU 1
:::::::::::::: :::.
284 CGUGCUCUCUCUCCAUGUUC 303
20 GCACGAGAGAGAGGAACAGU 1
:::::::::::::: :::.
93 CGUGCUCUCUCUCCAUGUUC 112
2.5
3
2.5
2.5
3
3
2.5
3
3
3
3
miRNA
EY677841
Fasciclin-like arabinogalactan protein 19; Gossypium hirsutum
Target
miRNA
EY721347
Glycine-rich protein; Nicotiana tabacum
Target
miRNA
TC7461
Chromosome chr15 scaffold_19; Vitis vinifera
Target
miRNA
EY707623
Chromosome chr1 scaffold_136; Vitis vinifera
Target
miRNA
CK665702
Chromosome chr15 scaffold_19; Vitis vinifera
Target
miRNA
TC12300
Chromosome chr1 scaffold_136; Vitis vinifera
Target
miRNA
TC6166
Chromosome chr8 scaffold_34; Vitis vinifera
Target
miRNA
TC2683
Chromosome chr2 scaffold_112; Vitis vinifera
Target
miRNA
miR827
EY672830
CB610971
miR894
TC5763
Chromosome chr2 scaffold_112; Vitis vinifera
Glycerol-3-phosphate permease like protein; Arabidopsis
thaliana
Target
miRNA
Target
miRNA
Chromosome chr8 scaffold_29; Vitis vinifera
Target
20 GCACGAGAGAGAGGAACAGU 1
:::::::::::::: :::.
286 CGUGCUCUCUCUCCAUGUUC 305
21 CGCACGAGAGAGAGGAACAGU 1
::: ::::::: ::::::::
145 GCGAGCUCUCUGUCCUUGUCU 165
20 GCACGAGAGAGAGGA-ACAGU 1
:::::::::::::.: :::::
158 CGUGCUCUCUCUCUUCUGUCA 178
20 GCACGAGAGAGAGGA-ACAGU 1
:::::::::::::.: :::::
546 CGUGCUCUCUCUCUUCUGUCA 566
20 GCACGAGAGAGAGGA-ACAGU 1
:::::::::::::.: :::::
201 CGUGCUCUCUCUCUUCUGUCA 221
20 GCACGAGAGAGAGGA-ACAGU 1
.::::::::::::.: :::::
1040 UGUGCUCUCUCUCUUCUGUCA 1060
20 GCACGAGAGAGAGGA-ACAGU 1
.::::::::::::.: :::::
767 UGUGCUCUCUCUCUUCUGUCA 787
21 ACAAACAACUACCAGUAGAUU 1
:::: ::::::::::::::::
207 UGUUCGUUGAUGGUCAUCUAA 227
21 ACAAACAACUACCAGUAGAUU 1
:::: ::::::::::::::::
214 UGUUCGUUGAUGGUCAUCUAA 234
21 ACAAACAACUACCAGUAGAUU 1
::::::::: ::: :::.::.
412 UGUUUGUUGCUGGGCAUUUAG 432
20 CCACUUGGGCUGCACUUUGC 1
: ::::.::::.:::::::
386 GCUGAAUCCGAUGUGAAACU 405
3
3
3
3
3
3
3
1
1
3
3