Teacher’s Profile 1. PERSONAL DETAILS: Name : Dr. Kailas Dashrath Sonawane Date of Birth : 19/03/1973 Sex : Male Marital Status : Married Languages known : Marathi, English, Hindi Postal Address : Department of Microbiology, Shivaji University, Vidyanagar, Kolhapur-416004 E. mail : [email protected] Website : www.unishivaji.ac.in Web : Phone : + 91–231-2609326 Mobile : + 91- 9881320719 Fax : + 91-231-2692333, 2691523 1 2. EDUCATIONAL QUALIFICATION: Certificate Degree Name of Institution Subjects Year Class Ph.D. Biochemistry University of Pune, Pune 2003 - M.Sc. Biochemistry Shivaji University, Kolhapur 1996 First B.Sc. Chemistry Shivaji University, Kolhapur 1994 First TITLE OF Ph. D. THESIS: “Structural Significance of the 3ˊ- adjacent N6-(2-isopentenyl adenosine) and related modifications in tRNA”. 3. SCHOLARSHIPS AND ACHIEVEMENTS DOCTORAL FELLOWSHIP 1999-2003 National Chemical Laboratory, Pune, India Senior Research Fellow (CSIR, New Delhi). Molecular modeling; Quantum chemical, molecular mechanics, molecular dynamics simulations study of hypermodified nucleosides present in anticodon loop of tRNA. 1996-1999 National Chemical Laboratory (NCL), Pune, India Project AssistantII, (Indo-French Project), IFCPAR, New Delhi Conformational preferences of hypermodified bases, i6A, ms2i6A. Protonation induced conformational preferences of hypermodified nucleosides (g6A, t6A, ms2t6A) present in anticodon loop of tRNA using various modeling techniques. POSTDOCTORAL FELLOWSHIP DURATION March 2003Oct. 2005 INSTITUTION National Institute of Health (NIH), Bethesda, MD, USA. DESIGNATION NATURE OF WORK DONE Post Doctoral Fellow Homology modeling, sequence analysis, molecular docking and molecular dynamics simulation studies on K+ ion channels. 2 4. RESEARCH AREA OF INTERESTS Bioinformatics/Computational Biology:- Molecular modeling. - Structural biology of hypermodified nucleosides, molecular modeling. - RNA-Protein interactions, Prediction of three-dimensional structures of enzymes involved in Alzheimer’s disease; homology modeling, molecular docking, and drug designing. Antimicrobial peptides and antibiotic resistance 5. TEACHING EXPERIENCE: Post graduate level - Since 2006 No. 1 Name Dr. Navnath M. Kumbhar 2 Dr. Bajarang V. Kumbhar 3 Dr. Rohit S. Bavi Degree Awarded Ph.D. Students Research Topic Structural study of Hypermodified nucleosides present in the anticodon loop of tRNA Effect of Hypermodified nucleosides on the anticodon loop structure of tRNA Structural consequences of modified nucleosides present in tRNA of hyperthermophilic Pyrodictium occultum and related species No. 1 Name Mr. Sagar H. Barage 2 Mr. Chidambar B. Jalkute 3 Mr. Sambhaji B. Thakar Year 2012 Current position Assistant Professor at Bharati Vidyapeeth, Pune 2013 Post Doctoral Fellow at IIT Bombay, Mumbai 2014 Post Doctoral Fellow at Gyeongsang National University, Jinju, South Korea Research students working Research topic Structural significance of endothelin converting enzyme and its role in alzheimer’s disease Studies on angiotensin converting enzyme and related proteases from microbial sources and their role in amyloid beta peptide degradation Development and analysis of biological databases using bioinformatics approach. Working since 01/07/2008 (Submitted Final Thesis) 01/07/2008 (Submitted Spiral Bound Copy) 01/01/2009 3 4 Mr. Maruti J. Dhanavade Studies on amyloid beta peptide degradation by using microbial enzymes Mrs. Asmita D. Kamble Role of Hypermodified nucleosides occur at wobble (34th) position in anticodon loop of tRNA Mr. Susmit B. Sambhare Structural studies of Hypermodified nucleoside lysidine (k2C)and its role in proper codon-anticodon recognition Mr. Rishikesh S. Studies on antibiotic resistant proteins Parulekar from Bacillus cereus and related species. Mr. Prayagraj M. Structural and functional Fandilolu consequences of Hypermodified nucleosides and their role in tRNA folding. Mr. Deepak B. Jadhav Studies on antimicrobial peptides from microorganisms and their therapeutic applications 5 6 7 8 9 01/07/2011 01/07/2010 01/07/2009 01/07/2012 01/07/2013 01/07/2013 6. FIELD OF EPXERTISE - Bioinformatics (Molecular modelling), Enzymology, Protein Modelling, Antibiotic Resistance 7. REVIEWER OF THE INTERNATIONAL JOURNALS FEBS J Amino Acids Journal of Molecular Modeling, Indian Journal of Microbiology Journal of Plant Biochemistry and Biotechnology Interdisciplinary Sciences- Computational Life Sciences 8. TECHNICAL AND ANALYTICAL SKILLS: - Molecular modelling techniques; Quantum Chemical semi-empirical methods, RM1, PM6, AM1, MMFF, Energy Minimization, MEPS, SASA, Molecular Dynamics Simulations, Homology Modeling, Sequence Analysis, Database Development and Analysis, UNIX, LINUX, Programming languages; FORTRAN, C, HTML, JAVA, AWK, etc. - Software: SYBYL, SPARTAN, DS Studio, Insight II, GROMACS, GUASSIAN, CHARMM, AMBER, Hyper Chem, AutoDock, Hex, PatchDock, RasMol, Clustal W, Chimera, etc. 4 9. FUNDED PROJECTS Research Projects in Progress/ Completed Title of Project/Scheme Funding agency 1. “Molecular modeling DST, study of hypermodified New Delhi nucleoside lysidine present at wobble position in anticodon loop of E. coli tRNAIle and its role in proper codonanticodon recognition” Funds received (Rs.) Date of starting Date of ending Worked as Principal Investigator/ Co-investigator 18,32,000/- January 2008 April, 2011 Principal Investigator 13,19,000/- July, 2011 March, 2014 Principal Investigator SERC - Fast Track Young Scientist Scheme. 2. “Structural Significance of UGC, New hypermodified nucleosides 5- Delhi taurinomethyluridine (τm5U) and its derivative 5taurinomethyl-2-thiouridine, (τm5s2U) present at ‘wobble’ position in anticodon loop of tRNA” Infrastructure Development Grants for the Department Title of Project/Scheme UGC SAP DRS I Infrastructure Grant Sanctioned to Department of Biochemistry, Shivaji University, Kolhapur UGC SAP DRS II Infrastructure Grant Sanctioned to Department of Biochemistry, Shivaji University, Kolhapur Funding agency UGC Funds received 32.00 Lakhs/+ 2 Project Fellows UGC 1.25 Cr. + 2 Project Fellows Year 20092013 20142019 Worked as Dy. Coordinator Dy. Coordinator 5 10. WORKSHOPS AND SEMINARS ATTENDED AND ORGANIZED Conference organized (05): 1. Convener, DST-PURSE Sponsored,one day National Seminar on, “Future Perspective of Biological Sciences” organized by Department of Microbiology, Shivaji University, Kolhapur, on 4th March, 2014. 2. Convener, UGC-SAP, DST Sponsored, two day “Challenges and Opportunities in Life Science-2013 (COLS-2013)” organized by Department of Biochemistry, Microbiology and Biotechnology, Shivaji University, Kolhapur, 8-9 February 2013. 3. Organizing Committee member in a workshop on “A Brain-Storming Session for Application of Technology for Sustainable Development in The State of Maharashtra” organized by Maharashtra Academy of Sciences and Shivaji University, Kolhapur on 26th and 27th November, 2012. 4. Convener, DST PURSE Sponsored, one day “International Webinar on Advances in Life Science” (WebLS-2012) organized by Department of Microbiology, Shivaji University, Kolhapur, on 21st January, 2012. 5. Organizing Secretary, UGC SAP DRS-I Sponsored, conference on “Recent Trends in Life Sciences-2011’ organized by Department of Biochemistry, Shivaji University, Kolhapur, on 4-5 March 2011. • National/ International Conferences Attended /Invited Talks: (Total: 44) International (Total 13) 1. Worked as a chairperson in International conference on, “Biosciences with Special Reference to Environmental issue ICBEI-2014” organized by Department of Zoology, Shivaji University, Kolhapur (M.S.) on 19th- 21th, December, 2013. 2. Invited talk in an “International conference on Emerging Horizons in Biochemical Sciences and Nanomaterials”on“Structural and functional significance of biomolecules using bioinformatics techniques” organized by Department of Chemistry and Microbiology, Shri Shivaji Mahavidyalaya, Barshi, Dist. Solapur, India (M.S.).,on 28th-30th November, 2013. 3. Attended International Conference on “Recent Innovations in Nano-Bio-PolymerPharmaceutical Technologies” jointly organized by School of Chemical Sciences, Life Sciences, Pharmacy and Physical Sciences, SRTM University, Nanded, Maharashtra, India on 13th and 14th January,1013. 4. Worked as Chairperson in International Conference on “Sustainable Water Resource Development and Management” organized by Department of Environmental Science, Shivaji University, Kolhapur on 20th and 21st December, 2012. 6 5. Attended International symposium of proteomics beyond ID’s and Foruth annual meeting of proteomics society of India. Organized by National Chemical Laboratory, Pune 22th to 24th November 2012. 6. Invited talk on “Role of modified nucleosides in recognition of proper codons and tRNAfolding”Organized by Centre for Interdisciplinary Research in Basic Sciences, JamiaMiliaIslamiaUnversity, New Delhi, 15th to 17thNovember, 2012. 7. AttendedInternational Interdisciplinary Science Conference on: Bioinformatics; an Interface between Computer Science and Biology, organized by Centre for Interdisciplinary Research in Basic Sciences, JamiaMiliaIslamiaUnversity, New Delhi, 15-17, November, 2011. 8. Attended XXXIII Conference on Indian Botanical Society and International Symposium on the New Horizons of Botany, Department of Botany, Shivaji University, Kolhapur, India, November 10-12, 2010. 9. Attended 8th Asia Pacific Bioinformatics conference (APBC), Bangalore. India, January 1821, 2010. 10. AttendedBioConvene: International Conference on Bioinformatics & Drug Discovery, pp. 145, University of Hyderabad, Hyderabad, December 19-22, 2007. 11. Attended Biophysical Society 49th Annual Meeting, Long Beach, California, USA, February 12-16, 2005. 12. Attended Biophysical Society 48th Annual Meeting, Baltimore, MD, USA. (B363), February 14-18, 2004. 13. Attended Fifth IUPAC International Symposium on Bio-Organic Chemistry, SBOC – 5, NCL, Pune, India,30th January- 4th February, 2000. • National Conferences Attended /Invited Talks: (Total 31) 1. Invited talk as a resource person to deliver talk on, “Bioinformatics: Introduction and Applications” organized by Department of Microbiology, YCCS, Karad on 26th July, 2014. 2. Invited lecture as a resource person on “Introduction to Bioinformatics; Genomics and Proteomics” in Refresher course in Life Science organized by Academic Staff College, Dr.Babasaheb Ambedkar Marathwada University, Aurangabad on 21stJuly, 2014. 3. Invited lecture as a resource person on “Understanding Biomolecules using Bioinformatics Techniques” in Refresher course organized by Academic Staff College, Dr.BabasahebAmbedkarMarathwada University, Aurangabad on 11th January, 2014. 4. Invited lecture as a resource person on “Introduction to Bioinformatics” in Refresher course organized by Academic Staff College, Dr.BabasahebAmbedkarMarathwada University, Aurangabad on 11th January, 2014. 7 5. Invited talk on, “Tools in Bioinformatics” in National Seminar on “Life Science Technologies for Changing Life Style” organized by Department of Biotechnology, V. G. Shivdare College of Arts, Commerce and Science, Solapur, Dist: Solapur on 6th January, 2014. 6. Invited lecture as a resource person on “Computational Chemistry” in Refresher course organized by Department of Chemistry, University of Pune, Maharashtra, India on 14 Nov, 2013. 7. Invited talk on, “Applications of bioinformatics techniques to understand biomolecules at atomic level” in National conference on “Recent trends in Biology: Nanoscience” (NCRTBN-2013), organized by Dahiwadi College, Dahiwadi, Tal.:Man, Dist.: Satara, Maharashtra, on 13th-14th December 2013. 8. Invited talk on, “Protein Sequence Databases and Analysis: Structure-function relationship” in workshop “Applications of Bioinformatics in Biotechnology, Pharmaceutical and Environmental Science” organized by Department of Biotechnology, Basaveshwar College of Engineering, Bagalkot, Karnataka, India on 14th September, 2013. 9. Invited talk on, “Structure-function relationship of biomolecules using bioinformatics techniques” in UGC Sponsored National Seminar on “Recent Trends in Cell Biology, Biotechnology and Bioinformatics” organized by Department of Zoology, Balawant College Vita, Dist. Sangli, Maharashtra, Indiaon 7th September, 2013. 10. Invited as Chief Guest for Valedictory function in the “State Level Competitions” jointly organized by Department of Microbiology, Science Association of Rajaram College, Kolhapur and Microbiologist Society of India on 1st September, 2013. 11. Invited as Chairperson and Judge for “State Level Competitions” jointly organized by Department of Microbiology, Science Association of Rajaram College, Kolhapur and Microbiologist Society of India on 1st September, 2013. 12. Invited talk as a chief guest on, “Applications of Biotechnology with reference to Bioinformatics” organized by Department of Biotechnology, YCCS, Karad on 27th July, 2013. 13. Invited talk on, “Bioinformatics: Scope and Applications” under the Biotechnology Association of Engineers Teachers and Students (BEATS) activity at KLE’s College of Engineering, Department of Biotechnology, Belgaum, Karnataka, 16 April, 2013. 14. Worked as Resource Person in workshop on “Tools and Techniques in Molecular Systemic/Phylogenetics” organized by Department of Botany, Shivaji University, Kolhapur on 9thNovember, 2012. 15. Invited as Chairperson in National Seminar on “Medicinal Plants: Status and Future”organized by Department of Botany, Shivaji University, Kolhapur on 6th and 7th November, 2012. 16. Invited as Chairperson in National Conference on “Importance of Scientific Terminology in Environmental Science in Regional Marathi Language” organized by Department of Environmental Science, Shivaji University, Kolhapur on 28th Oct. 2012. 8 17. Delivered a talk on “Bioinformatics: The Future of Life Sciences” in the Annual Science SeminarActivityatYashawantraoChavan College of Science, Karad, Dist.: Satara, Maharashtra, India on 26th September, 2012. 18. Kailas D. Sonawane, Participated “Research Writing, Ethics, Plagiarism and Publishability” on 26-27, July, 2012. 19. Kailas D. Sonawane, Participated, V-Life Publication Award Function on “V Life User Group Meeting”, at Hyatt Regency, Viman Nagar, Pune on 9th July, 2012. 20. National conference on “TRANSCRITION2K12” on Advances in Biotechnology on 16th March 2012 organized by Department of Biotechnology, College of Engineering and Technology Bhambori, Jalgaon, India. 21. “Symposium on Accelerating Biology 2012: Computing to decipher”, organized by Bioinformatics group, Center for Development of Advanced Computing C-DAC Pune, India 15-17th February 2012 C-DAC Pune. 22. UGC sponsored State Level Seminar on Application of Computer in Biological Sciences, on 21st-22nd December, 2011, Organized by Department of Zoology and Botany, KarmveerBhauraoPatilMahavidyalya, Pandharpur, India. 23. One day Workshope on, “e-learning in Microbiology”, organized by Department of Microbiology, Dr. BabasahebAmbedkarMarathwada University, Aurangabad, Sub centreOsmanabad, on 21st August, 2011. 24. Invitation for workshop on T.E. Biotechnology Engineering syllabus for Bioinformatics, organized by TatyasahebKore Institute of Engineering and Technology, Warananagar, Ta.: Panhala, Dist.: Kolhapur. 25. Challenges and Opportunities in Information Technology and Bioinformatics (NCCOITBT09), Swami VivekanandMahavidyalaya, Udgir, Maharashtra, India, 27– 28th February, 2009. 26. Invited as a resource person in the subject of Bioinformatics for Workshop on Syllabus of B.Sc.III Biotechnology, organized by Department of Biotechnology, Smt. KasturbaiWalchand College, Sangli on 9th and 10th October, 2009. 27. Invitation as a guest lecture on “Introduction to Bioinformatics, Related Website, Databases available and its Scope” organized by Department of Microbiology, Government of Maharashtra, Rajaram College, Kolhapur on 5th December, 2009. 28. Expert lecture for subject Bioinformatics at TatyasahebKore Institute of Engineering and Technology, Warananagar, Ta.: Panhala, Dist.: Kolhapur on 16th January, 2008. 29. Kailas D. Sonawane. Symposium on Genes to Drugs: In-Silico Approaches, C-DAC, University of Pune Campus, Pune, India, April 29-30, 2008. 30. Delivered talk in four day workshop on “A workshop on Microarray Data Analysis using ‘R’ software” organized by Department of Statistics, Shivaji University, Kolhapur from 21-24, December, 2007. 9 31. Invited talk as a chief guest for the inaugural function of “Science Lecture Series” on “Recent Trends in Biotechnology and Bioinformatics” organized by Shri. Shivaji MahavidyalayaBarshi, Dist. Solapur, August, 2007. 11. RESEARCH PUBLICATIONS (PUBLISHED) • National/International: (Total 39) International: (Total: 33) 1. Maruti J. Dhanavade, and Kailas D. Sonawane, “Insights into the molecular interactions between aminopeptidase and amyloid beta peptide using molecular modeling techniques Amino Acids, 46: 1853-1866, 2014 (Impact Factor: 3.914) 2. Sagar H. Barage, Chidambar B. Jalkute, Maruti J. Dhanavade and Kailas D Sonawane. Simulated interactions between Endothelin converting enzyme and A peptides: insights into subsite recognition and cleavage mechanism. Int. J of Peptide Research and Therapeutics. (Impact Factor: 1.280) DOI:10.1007/s10989-014-9403-2, Published Online 03 April 2014 3. Susmit B. Sambhare, Bajarang V. Kumbhar, Asmita D. Kamble, Rohit S. Bavi, Navanath M. Kumbhar and Kailas D. Sonawane“Structural significance of modified nucleosides k2C and t6A present in the anticodon loop of tRNAIle RSC Advances, 4: 14176- 14188, 2014 (Impact Factor: 2.5) 4. ShanmugaPriya V. G., Muddapur U. M., Sonawane K. D., Mehta M.CarD-a reliable target in M. tuberculosis. Int. Journal of Pharmaceutical Science Invention, 3, 38-46, 2014 5. Maruti J. Dhanavade, Chidambar B. Jalkute, Sagar H. Barageand Kailas D. Sonawane “Homology modeling, molecular docking and MD simulation studies to investigate role of cysteine protease from Xanthomonas campestrisin degradation of Aβ peptide”(DOI: 10.1016/j.compbiomed.2013.09.021 Computers in Biology and Medicine 43: 2063-2070, 2013 (Impact Factor 1.1). (SCIENCEDIRECT TOP 25 LIST OF MOST DOWNLOADED ARTICLES RANKED 12TH ON THE TOP 25FOR COMPUTERS IN BIOLOGY AND MEDICINE – OCTOBER TO DECEMBER 2013) 6. Sagar H. Barage and Kailas D. Sonawane, “Exploring mode of phosphoramidon and Aβ peptide binding to hECE-1 by molecular dynamics and docking studies”. Protein and peptide Letter, 21: 140-152, 2013 (Impact Factor: 1.994). 7. Nazeruddin, G.M., N.R. Prasad, S.R. Prasad, K.D. Sonawane, and D. Kumbhar. “In-Vitro BioFabrication of Silver Nanoparticle Using Trigonella foenum Seed Extract.” Res. J. of Pharma. Biol. and Chem. Sci., 5: 167-175, 2014.(Impact Factor 0.35) 8. Shailesh R. Waghmare, Mustopa N. Mulla, Suryakant R. Marathe, and Kailas D. Sonawane. Ecofriendly production of silver nanoparticles and its mechanistic action. 3Biotech, 2014 (In press). DOI: 10.1007/s13205-014-0196-y 9. Prasad B. Hosmat, Kailas D. Sonawane and Shailesh R. Waghmare. Antibacterial activity of Vulgarol A extracted from the leaves of Syzygium cumini.Asian Journal of Pharmaceutical and Clinical Research, 6:100-102, 2013. (Impact Factor 0.6). 10 10. Rishikesh S. Parulekar, Sagar H. Barage, Chidambar B. Jalkute, Maruti J. Dhanavade and Kailas D. Sonawane, “Homology modeling, molecular docking and DNA binding studies of nucleotide excision repair UvrC protein from M. tuberculosis” The Protein Journal, 32, 467-476, 2013 (Impact Factor 1.14). 11. Sambhaji B. Thakar and Kailas D. Sonawane. “Mangrove Infoline Database: A database of mangrove plants with protein sequence information”. Current Bioinformatics, 8, 5, 2013 (Impact Factor 2.017). 12. ChidambarJalkute, SagarBarage, MarutiDhanavade and Kailas Sonawane, “Molecular dynamics simulation and molecular docking studies of Angiotensin Converting Enzyme with inhibitor lisinopril and amyloid beta peptide. The Protein Journal, 32, 356-364, 2013 (Impact Factor 1.14). 13. Bajarang V. Kumbhar, Asmita D. Kamble, Kailas D. Sonawane. “Conformational Preferences of Modified Nucleoside N(4)-Acetylcytidine, ac4C Occur at ‘‘Wobble’’ 34th Position in the Anticodon Loop of tRNA”. Cell Biochemistry and Biophysics, 66, 797-816, 2013 (Impact Factor 3.743). 14. Jadhav, S.Y., Bhosale, R. B., Shirame, S. P., Sonawane, V. D., Hublikar, M. G., Sonawane, K. D. and Shaikh, R.U. “Synthesis and Biological evaluation of Fluoro-hydroxy submitted PyrazoleChalcones as Anti-inflammatory Antioxidant and Antibacterial Agents”. Int J Pharm Bio Sci., 4, 390 – 397, 2013 (Impact Factor 0.4) (SCOPUS Reported). 15. Sagar H. Barage, Chidambar B. Jalkute, Maruti J. Dhanavade and Kailas D Sonawane. Virtual screening and molecular dynamics simulation study of hECE-1 protease inhibitors. Res. J. of Pharma.Biol. and Chem. Sci. 4, 1279, 2013 (SCOPUS Reported). 16. Rohit S. Bavi, Sushmit B. Sambhare and Kailas D. Sonawane, “MD simulation studies to investigate iso-energetic conformational behaviour of modified nucleosides m2G and m22G present in tRNA. Computational and Structural Biotechnology Journal, 5, 1-8, 2013. 17. Sapkal, R.T., Shinde, S.S., Sapkal, D.M., Babar, A.R., Shinde, V.V., Jalkute, C.B., Moholkar, A.V., Rajpure, K.Y., Sonawane, K.D., Patil, P.S., Bhosale, C.H. Photoelectrocatalytic activity of spray deposited ZnO thin films against E. coli Davis. Material Research Innovations, 16, 417-424, 2012 (Impact Factor: 0.409). 18. Navanath M. Kumbhar, Bajarang V. Kumbharand Kailas D. SonawaneStructural significance of hypermodified nucleic acid base hydroxywybutine (OHyW) which occur at 37th position in the anticodon loop of yeast tRNAPhe. J. of Molecular Graphics and Modelling, 38, 174-185, 2012 (Impact Factor 2.2). 19. Bajarang V Kumbhar,Navanath M. Kumbhar and Kailas D. Sonawane, “Conformational Preferences and MD Simulation Studies of the Hypermodified Nucleic Acid Base, mS 2hn6Ade Present at 3'-Adjacent (37th) Position in Anticodon Loop of HyperthermophilictRNAs. Int. Elc. J. Mol. Design, 11, 33-48, 2012. 20. Rohit S. Bavi, Asmita D. Kamble, Navanath M. Kumbhar, Bajarang V. Kumbhar and Kailas D. Sonawane, “Conformational preferences of modified nucleoside N2-methylguanosine (m2G) and its derivative N2, N2-dimethylguanosine (m22G) occur at 26th position (hinge region) in tRNA”. Cell Biochemistry and Biophysics, 507-521, 61, 2011 (Impact Factor 4.321). 21. Navanath M. Kumbhar and Kailas D. Sonawane “Iso-energetic multiple conformations of hypermodified nucleic acid base Wybutine (yW) which occur at 37th position in anticodon loop of tRNAPhe”. J. of Molecular Graphics and Modelling, 29, 935-946, 2011 (Impact Factor 2.2). 22. Maruti J. Dhanawade, Chidamber B. Jalkute, Jai S. Ghosh and Kailas D. Sonawane “Study Antimicrobial Activity of Lemon (Citrus lemon L.) Peel Extract”. 11 British J. of Pharmacology and Toxicology, 2, 119-122, 2011. 23. Susmit B. Sambhare, Navanath M. Kumbhar, Asmita D. Kamble, Bajarang V. Kumbhar and Kailas D. Sonawane “Molecular modeling study to investigate conformational preferences and base stacking interactions of hypermodifiednucleoside lysidine (k2C) incorporated in the trinucleotide segment of anticodon loop of tRNAIle”. Bionanofrontier, 4, 191-196, 2011 (Impact Factor 0.237). 24. Kailas D. Sonawane,Bajarang V. Kumbhar, Navanath M. Kumbhar, Susmit B. Sambhare and Asmita D. Kamble. “Consequences of 5’ -3’ diphosphate backbone on the conformation of hypermodified nucleotide lysidine (k2C) occur at wobble (34th) position in the anticodon loop of tRNAIle”. International J Bioinformatics Research, 3, 148-160, 2011. 25. Sonawane, K. D., Tewari, R. “Conformational preferences of hypermodified nucleoside lysidine (k2C) occurring at ‘wobble’ position in anticodon loop of tRNAIle”. Nucleosides, Nucleotides and Nucleic Acids. 27, 1158-1174, 2008 (Impact Factor 1.3). 26. Gea-Ny, Tseng., Sonawane, K. D.,Korolkova, Y. V., Zhang, M., Liu, J., Grishin, E. V., and Guy, H. R. “Probing outer mouth structure of hERG channel with peptide toxin foot printing and molecular modeling. Biophysical J. 92, 3524-3540, 2007 (Impact Factor 4.8). 27. Zhang, M., Liu, J., Jiang, M, Wu, D. M., Sonawane K., Guy, H. R. and Tseng, G. N. “Interactions between charged residues in the transmembrane segments of voltage-sensing domain in the hERG channel. J. Memb. Biol. 207, 169-181, 2005 (Impact Factor 2.8). 28. Sonavane, U. B., Sonawane, K. D. and Tewari, R. Modified Nucleotides and across the anticdon loop interaction in tRNA. Europ. Biophysics Lett., 34, 581-581, 2005. 29. Sonavane, U.B., Sonawane, K. D. and Tewari, R. “Conformational preferences of the base substituent in hypermodified nucleoside queuisine 5’monophosphate ‘pQ’ and protonated variant ‘pQH+’”. J. Biomol. Struct.Dyn.20, 437-485, 2002 (Impact Factor 4.923). 30. Sonawane, K. D., Sonavane, U.B., and Tewari, R. “Conformational preferences of anticodon 3’-adjacent hypermodified nucleic acid base cis- or trans-Zeatin and its 2-methylthio derivative, cis- or trans-ms2Zeatin”. J. Biomol. Struct.Dyn.19, 637-648, 2002 (Impact Factor 4.923). 31. Sonawane, K. D., Sonavane, U.B. and Tewari, R. “Conformational flipping of the N(6) substitutent in diprotonated N6-(N-glycylcarbonyl) adenines: The role of N(6) H in purine ring protonated ureido adenines. Intl. J. Quantum Chem. 78, 398-405, 2000 (Impact Factor 1.317). 32. Sonavane, U.B., Sonawane, K.D., Morin, A., Grosjean, H. and Tewari, R. “N(7)-protonation induced conformational flipping in hypermodified nucleic acid bases N6-(N-threonylcarbonyl) adenine and its 2-methylthio- or N(6)-methyl-derivatives. Intl. J. Quantum Chem. 75, 223-229, 1999 (Impact Factor 1.317). 33. Sonawane, K.D., Grosjean, H. and Tewari, R. “Conformation of anticodon adjacent hypermodified nucleoside N6-hydroxylisopentenyl adenosine, io6A. J. Biosci. 24, 183-183, 1999 (Impact Factor 1.96). 12 Gene Sequences Submitted to NCBI/GenBank: 04 1. Submitted 16S rDNA sequence to NCBI (Accession No. KJ849237) of isolated Bacillus subtilis sub Sp. subtilis strain RK. 2. Submitted 16S rDNA sequence to NCBI (Accession No. KJ427751) of isolated Bacillus safensis strain CK 3. Submitted 16S rDNA sequence to NCBI (Accession No. KC812737) of isolated Stenotrophomonas maltophilia strain SK. 4. Submitted 16S rDNA sequence to NCBI (Accession No. JX962052) of isolated Streptomyces regensis strain MK • National (Total: 06) 1. Chinta, S.K., Landage S. M., Abhishek, Sonawane K.D.& Jalkate C.B. Medical TextilesApplications of Essential oil as antimicrobial agent on nonwoven. Global Journal of Bioscience & Biotechnology 1, 75-80, 2012. 2. Kailas D Sonawane, “Role of modified nucleosides in recognition of proper codons and tRNA folding”. Journal of Proteins and Proteomics, 3, JPP12, 2012. 3. Bajarang V Kumbhar and Kailas D Sonawane “Molecular modeling study of hypermodified nucleic acid base 3-hydroxynorvalylcarbamoyl adenine, hn6Ade present at 3’-adjacent position in anticodon loop of hyperthermophilict RNAs” IRSAPS Bulletin 3,8-15, 2012. 4. Navanath M. Kumbhar, Bajarang V. Kumbhar and Kailas D. Sonawane. Molecular modeling studies of hypermodified nucleosides present in Anticodon loop of tRNA. Journal of Natural Science, Biology and Medicines 2, 2011. 5. Sapkal,R.T., S.S. Shinde, A.R. Babar, C.B. Jalkute,K.Y. Rajpure , K.D. Sonawane C.H. Bhosale. Photoelectrocatalytic purification of fecal, tap and E.coli contained water using ZnO thin films: A comparative study. Int. J. Basic and Applied Research, 1, 42-49, 2011. 6. Sapkal, R. T., Shinde, S. S., Sapkal, M. R., Babar, A. R. Sakpal, D. M., Jalkute, C. B., Rajpure, K. Y., Patil, P. S., Sonawane, K. D. and Bhosale, C. B. “Photoelectrocatalytic Hydrolysis ofStarch By Sprayed Zno Thin Film”. Material Science, 7, 2011. Papers presentation in International Conferences (Total: 28) 1. 2. Maruti J. Dhanavade, Chidambar B. Jalkute, Sagar H. Barage and Kailas D. Sonawane, Homology Modeling and Molecular Docking studied to find role of cathepsin B from Hordeum vulgare in degradation of Aβ peptide, Poster-MM10, Page No 117-118, Accelerating Biology- Computing Life, CDAC, Pune, On 18-20 February, 2014. Prayagraj Fandilolu, Bajarang V. Kumbhar, Asmita D. Kamble, Rohit. S. Bavi, Susmit B. Sambhare, and Kailas D. Sonawane. Conformational preferences of hypermodified nucleic acid base Peroxywybutine (o2yW) occur at 37th position in tRNAPhe” Poster No.- MM14, Page 13 No. – 125-126, Accelerating Biology -Computing Life, CDAC, Pune, On 18-20 February, 2014. 3. Asmita S. Kamble, Susmit B. Sambhare, Bajarang V. Kumbhar and Kailas D. Sonawane. “Conformational preferences of hypermodified nucleoside 5-taurinomethyluridine, τm5U(34) diphosphate in anticodon loop segment of tRNATrp” Page no 211, Presented in “International conference on Emerging Horizons in Biochemical Sciences and Nanomaterials” organized by Department of Chemistry and Microbiology, Shri Shivaji Mahavidyalaya, Barshi, Dist. Solapur, India (M.S.), 2013. 4. Chidamber B. Jalkute, Sagar H. Barage, Maruti J. Dhanavade and Kailas D. Sonawane, “Role of Stigmatellaaurantiaca ACE in the degradation of AB-peptide: Molecular Docking and Molecular Dynamic Simulation Study” Page no 203, Presented in “International conference on Emerging Horizons in Biochemical Sciences and Nanomaterials” organized by Department of Chemistry and Microbiology, Shri Shivaji Mahavidyalaya, Barshi, Dist. Solapur, India (M.S.) 2013. 5. Prayagraj M. Fandilolu, Deepak B Jadhav, Rishikesh S Parulekar, Kailas D. Sonawane. “Insights into the molecular interactions between Kanamycinephosphotransferase from E.coli and its inhibitor Anthrapyrazolone: Molecular modeling approach” page no 193, Presented in “International conference on Emerging Horizons in Biochemical Sciences and Nanomaterials” organized by Department of Chemistry and Microbiology, Shri Shivaji Mahavidyalaya, Barshi, Dist. Solapur, India (M.S.), 2013. 6. Bajarang V. Kumbhar, Susmit B. Sambhare, Asmita D. Kamble, Rohit S. Bavi and Kailas D. Sonawane. Conformational preferences of modified nucleoside ac4C occur at ‘wobble’ position in the model loop segment of anticodon loop of E. coli non-initiator tRNAMet: Role in proper recognition of AUA/AUG codons. “International conference on Recent Innovations in Nano-Bio-Polymer-Pharmaceutical Technologies” SRTM University Nanded India (M.S.), January 13th& 14th, 2013. 7. Sambhaji B. Thakar and Kailas D Sonawane, Mangrove Infoline Database: A database of mangrove plants with protein sequence information. “International conference on structural and functional Genomics (ICSAFG)” organized by School of Chemical and Biotechnology, Sastra university, Tanjavur, (T.N) India. 8. Rishikesh S Parulekar, Sagar H Barage, and Kailas D Sonawane. Homology modeling and molecular docking studies of UvrC protein from Mycobacterium tuberculosis with DNA. International symposium of proteomics beyond ID’s and Foruth annual meeting of proteomics society of India. Organized by National Chemical Laboratory, Pune 22th to 24th November, 2012. 9. Maruti J Dhanvade, Sagar H Barage, Chidamber B Jalkute and Kailas D Sonawane. Insight into the cleavage mechanism of amyloid beta peptide by Cathepsin B like cysteine protease from xanthomonascampestris: homology modeling and molecular docking approach. International symposium of proteomics beyond ID’s and Foruth annual meeting of proteomics society of India. Organized by National Chemical Laboratory, Pune 22th to 24th November, 2012. 10. S Y Jadhav, V D Sonawane, M J Dhanavade, C B Jalkute, K D Sonawane, R B Bhosale. “An efficient green synthesis, characterization and molecular modelling studies of fluoro substituted pyrazoline derivatives” in 17th International conference on "Expanding Horizons in Chemical and Biological Sciences:Innovations Crossroads, (ISCBC-2012), at School of Chemical Sciences, Solapur University, Solapur, Poster174, Page No- 255, January 21st-24th, 2012. 11. Apurva D. Kodolikar, Dhanashri S. Patil, Asmita D Kamble, Sagar H. Barage, Chidambar B. Jalkute and Kailas D. Sonawane. “Homology modeling study of Chitinase from 14 12. 13. 14. 15. 16. 17. 18. 19. 20. 21. Thermomyceslanuginosus ”in International Conference on “Biotechnology for Better Tomorrow”(BTBT-2011) at The Department of Microbiology, Dr. BabasahebAmbedkarMarathwada University, Aurangabad, Sub-center Osmanabad, Maharashtra, (INDIA), Feb 6-9, 2011. Maruti J. Dhanavade, Sagar H. Barage, Chidambar B. Jalkute and Kailas D. Sonawane “Homology modeling study of Cathepsin B (CatB) from Rhodopirellulabaltica” in International Conference on “Biotechnology for Better Tomorrow”(BTBT 2011) at Department of Microbiology, Dr. Babasaheb Ambedkar Marathwada University, Aurangabad, Sub-center Osmanabad, Maharashtra, (INDIA). OMM-13, Page-78, Feb 6-9, 2011. Chidambar C. Jalkute Sagar H. Barage and Kailas D. Sonawane, “Molecular dynamic(MD) of angiotensin converting enzyme (ace) with its inhibitor and β-amyloid peptide.” International Conference on “Biotechnology for Better Tomorrow”(BTBT 2011) at Department of Microbiology, Dr. Babasaheb Ambedkar Marathwada University, Aurangabad, Sub-center Osmanabad, Aurangabad University, Aurangabad. 6-9 Feb-2011. Jadhav N. R., Bhende S. A., Bhawale B. K., Sonawnae, K. D., “ Investigation of interactions between Poorly soluble drugs and Moringa coagulant enhancing dissolution”, 11th International Symposium on Advances in Technology and Business Potential of New Drug Delivery Systems, organized by Controlled Release Society Indian Chapter, Mumbai, 16-17, February, 2011. Sagar H. Barage, Priya V. Ayyar, Chidambar B. Jalkute and Kailas D. Sonawane,”Structural study of Cathepsin B and its inhibitors produced by plant pathogens”,XXXIII Conference on Indian Botanical Society and International Symposium on the New Horizons of Botany, Department of Botany, Shivaji University, Kolhapur, India, November 10-12, 2010. Sambhare, S.B., Kumbhar, B.V., Kumbhar, N. M, Kamble, A.D. and Sonawane, K.D. “ Structural significance of hypermodified nucleic acid base ‘lysidine’ (k2C) Present at wobble position in the model diphosphate segment (Me-p-k2c-p-me) of E.coli tRNAphe anticodon loop.” International Conference on Bioinformatics and System Biology. Zoology wing – DDE, Annamalai University, Annamalai Nagar-608002 India. Page-247, February 19-21, 2010. Sagar H. Barage, Chidambar, B Jalkute, and Kailas. D. Sonawane, “Molecular modeling study of endothelin converting enzyme (ECE) embedded in lipid bilayer membrane.” International Conference on Bioinformatics and System Biology. Zoology wing –DDE, Annamalai University, Annamalai Nagar-608002 India, Page-60, February 19-21, 2010. Sambhaji. B. Thakar and Kailas. D. Sonawane, “Mangroves plant resource database (MPRDB)” International Conference on Bioinformatics and System Biology. Zoology wing –DDE, Annamalai University, Annamalai Nagar-608002 India, Page-60, February 1921, 2010. Bajarang V Kumbhar, Navanath M. Kumbhar, and Kailas D. Sonawane “Conformational preferences of N6- hydroxynorvalylcarbamoyl adenine, hn6Ade and ms2hn6Ade present at 37th position in the anticodon loop of tRNA” 8th Asia Pacific Bioinformatics conference (APBC), Bangalore. India, January 18-21, 2010. Bajarang V. Kumbhar, Navanath M. Kumbhar and Kailas D. Sonawane, “Structural significance of anticodon adjacent hypermodified nucleoside N6-hydroxynorvalylcarbamoyl adenosine, hn6A”, BioConvene: International Conference on Bioinformatics & Drug Discovery, pp. 145, University of Hyderabad, Hyderabad, December 19-22, 2007. Navanath M. Kumbhar, Bajarang V. Kumbharand Kailas D. Sonawane Conformational study of hypermodified nucleoside Wybutosine occurs at the 3’-adjacent position in the 15 22. 23. 24. 25. 26. 27. 28. anticodon loop tRNAPhe. BioConvene: International Conference on Bioinformatics & Drug Discovery, pp. 151, University of Hyderabad, Hyderabad, December 19-22, 2007. Tewari, R., Sonavane, U. V., Sonawane, K. D. and Karpoormath, R. Deficient Wobble Nucleoside Modifications In tRNA: Implications for Decoding and Human Diseases. Fourth Indo-Australian Conference on Biotechnology, Queensland Institute of Medical Research, Brisbane, Australia. May 7-9 2007. Sonawane, K., Shrivastava, I., and Guy, H.R. Models of the structure and gating mechanism of the hERG channel. Biophysical Society 49th Annual Meeting, Long Beach, California, USA, February 12-16, 2005. Sonawane, K.D., Gea-Ny, Tseng. and H. Robert Guy. Models of the structure and gating mechanism of hERG K+ channels developed from models of KvAP. Biophysical Society 48th Annual Meeting, Baltimore, MD, USA. (B363), February 14-18, 2004. Mei Zhang, Jie Liu, Kailas Sonawane, Min Jiang, H. Robert Guy, Gea-Ny Tseng. Interactions Between Charged Residues In The Transmembrane Helices Of Herg’s Voltagesensing Domain. Biophysical Society 48th Annual Meeting, Baltimore, MD, USA. (B424), February 14-18, 2004. Min Jiang, Mei Zhang, Jie Liu, InnokentyMaslennikov, Yuliya V Korolkova, Alexander S Arseniev, Eugene V Grishin, Kailas Sonawane, H. Robert Guy, Gea-Ny Tseng. Probing Dynamic Interactions Between Extracellular S5-p Linker And Other Domains Of The Herg Channel Using Disulfide Formation,Biophysical Society 48th Annual Meeting, Baltimore, MD, USA. (B426), February 14-18, 2004. Kailas D. Sonawane, Uddhavesh B. Sonavane and RavindraTewari. “Protonation Induced Conformational Flipping of Hypermodified Nucleosides and Maintenance of the Reading Frame for Codon - Anticodon Interactions” Physical Aspects of Photobiological Processes: Photobiology and Energy Conversion, Nagoya University, Nagoya Japan, P23, July 27 – 28, 2001. Kailas D. Sonawane, Uddhavesh B. Sonavane and RavindraTewari, ICBP 2001, 4th International Conference on Biological Physics, Kyoto International Conference Hall, Kyoto, Japan, July 30 – August 3, 2001. Papers presentation in National Conferences (Total: 46) 1. Bajarang V. Kumbhar and Kailas D. Sonawane. Molecular dynamics (MD) simulation study of anticodon stem loop segment of E. colielongatortRNAMet containing modified nucleoside ac4C at 34th and t6Ade at 37th position. page no 52, Presented in “Challenges and Opportunities in Life Science (COLS-2013)” organized by Department of Biochemistry, Microbiology and Biotechnology Shivaji University, Kolhapur, India (M.S.) (2013). 2. Asmita D. Kamble, Bajarang V. Kumbhar, Susmit B. Sambhare and Kailas D. Sonawane. Molecular electrostatic potential (MEPs) calculations of base pair models of τm5U34:G3 and τm5U34:A3 over RM1 predicted most stable structure of 5-taurinomethyluridine, τm5U. page no 78, Presented in “Challenges and Opportunities in Life Science” organized by Department of Biochemistry, Microbiology and Biotechnology Shivaji University, Kolhapur, India (M.S.) (2013). 3. Maruti J. Dhanavade, Sagar H. Barage, Chidamber B. Jalkute and Kailas D. Sonawane “Homology Modeling, Molecular dynamic simulation and Molecular Docking study of plant Cathepsin B for finding possible A peptide degrading enzymes from plant” page no 76, Presented in “Challenges and Opportunities in Life Science” organized by Department of Biochemistry, Microbiology and Biotechnology Shivaji University, Kolhapur, India (M.S.) (2013). 16 4. Sagar H. Barage and Kailas D. Sonawane “Insights into the cleavage mechanism of amyloid beta (Aβ) peptide and its mutant by human endothelin converting enzyme (hECE-1) using molecular docking and molecular dynamics simulation” page no 29, Presented in “Challenges and Opportunities in Life Science” organized by Department of Biochemistry, Microbiology and Biotechnology Shivaji University, Kolhapur, India (M.S.) (2013). 5. FandiloluPrayagraj, FadatareAmol, PujariSudeep, ChikhalkarPramod and Sonawane Kailas“A Computational approach to understand Tuberculosis (TB) infection” Page No. 83, Challenges and Opportunities in Life Sciences(COLS 2013) organized by Dept. of Biochemistry, Microbiology, Biotechnology, Shivaji University, Kolhapur on 8-9 February 2013. 6. Deepak Jadhav, PrayagrajFandilolu and Kailas Sonawane“Homology Modelling and Molecular Docking of N-acetyl transferase from Pseudomonas aeruginosa” Page No. 88 Challenges and Opportunities in Life Sciences (COLS 2013) organized by Dept. of Biochemistry, Microbiology, Biotechnology, Shivaji University, Kolhapur on 8-9 February 2013. 7. S. A. Randive, P. D. Gangdhar, S. R. Waghmare and K. D. Sonawane“Purification and characterization of antimicrobial peptides from isolated species” Page No.48 in Challenges and Opportunities in Life Sciences(COLS 2013) organized by Dept. of Biochemistry, Microbiology, Biotechnology, Shivaji University, Kolhapur on 8-9 February 2013. 8. G. B. Karale, D. M. Bokare, K. D. Sonawane and S. R. Waghmare“Mechanistic study of biologically synthesized silver nanoparticles” Page No.57 in Challenges and Opportunities in Life Sciences(COLS 2013) organized by Dept. of Biochemistry, Microbiology, Biotechnology, Shivaji University, Kolhapur on 8-9 February 2013 9. S. G. Chougule, S. M. Shinde, N. H. Nadaf, K. D. Sonawane, and S. R. Waghmare. Studies on Phytochemical constituents of stem bark from Carissa carandus and its antibacterial activity. pp.44, National Seminar on Medicinal Plants: Status and Future. Organized by Department of Botany, Shivaji University, Kolhapur. 6th and 7th November, 2012. 10. S. S. Gawade, A. S. Muniv, S. R. Waghmare, K. D. Sonawane, and N. H. Nadaf. Anti – yeast and antioxidant properties of Nigella sativa seeds extract. pp.31, National Seminar on Medicinal Plants: Status and Future. Organized by Department of Botany, Shivaji University, Kolhapur. 6th and 7th November, 2012. 11. S. B. Jhample and K. D. Sonawane“Homology modeling of subtilisin from Bacillus subtilis” in Challenges and Opportunities in Life Sciences(COLS 2013) organized by Dept. of Biochemistry, Microbiology, Biotechnology, Shivaji University, Kolhapur on 8-9 February 2013Page No.59 12. Subodh A. Kamble, Girish B. Kadam, Ravindra M. Kumbhar and Kailas D. Sonawane“Prediction of 3D structure of Neprilysin by using homology modeling” in Challenges and Opportunities in Life Sciences(COLS 2013) organized by Dept. of Biochemistry, Microbiology, Biotechnology, Shivaji University, Kolhapur on 8-9 February 2013Page No.71 13. Snehal Kulkarni, SupriyaShinde, RankaleBhagyashri and Kailas D. Sonawane“Studies on Tetracycline Resistivity from Hospital Isolates” in Challenges and Opportunities in Life Sciences(COLS 2013) organized by Dept. of Biochemistry, Microbiology, Biotechnology, Shivaji University, Kolhapur on 8-9 February 2013Page No.72 14. S. M. Joshi, J. S. Waghmare, K. D. Sonawane and S. R. Waghmare“Bioethanol production from orange peel waste” in Challenges and Opportunities in Life Sciences(COLS 2013) organized by Dept. of Biochemistry, Microbiology, Biotechnology, Shivaji University, Kolhapur on 8-9 February 2013Page No.84 17 15. S. A. Chougule, M. A. Dhone, K. D. Sonawane and S. R. Waghmare“Biofabrication of silver nanoparticles and its uses against pathogenic microorganisms” in Challenges and Opportunities in Life Sciences(COLS 2013) organized by Dept. of Biochemistry, Microbiology, Biotechnology, Shivaji University, Kolhapur on 8-9 February 2013Page No.86 16. MalkarRadhika, NimbalkarShradha, ParulekarRishikesh, and Kailas D.Sonawane, “Homology Modeling and Molecular Docking study of ArnA protein and its role in antibiotic resistivity in “Erwiniaamylovora”,” in “Challenges and Opportunities in Life Sciences” organized by department of Biochemistry, Microbiology and Biotechnology, Shivaji University, Kolhapur, 8-9th February, 2013. Page.no.46. 17. PanditMadhura, Shaikh Ruksar, ParulekarRishikesh, and Kailas D.Sonawane, “Homology Modeling and Molecular Docking Study of Multi-Drug Resistant Protein NorM from Vibrio parahaemolyticus”, in “Challenges and Opportunities in Life Sciences” organized by department of Biochemistry, Microbiology and Biotechnology, Shivaji University, Kolhapur, 89th February, 2013. Page.no. 49. 18. P. K. Kataria, K. K. Bhise,R. S. Parulekar, S. R. WaghmareandK. D. Sonawane, “Insights on streptomycin resistance mechanism”, in “Challenges and Opportunities in Life Sciences” organized by department of Biochemistry, Microbiology and Biotechnology, Shivaji University, Kolhapur, 8-9th February, 2013.Page.no.38. 19. Asmita D. Kamble, Bajarang V. Kumbhar, Susmit B. Sambhare and Kailas D. Sonawane, “Molecular electrostatic potential (MEPs) calculations of base pair models of m5s2U34:G3 and m5s2U34:A3 over RM1 predicted stable structure of 5-taurinomethyl-2-thiouridine (m5s2U)” National symposium on “Frontiers of Biophysical, Biotechnology & Bioinformatics” 37th annual meeting of Indian Biophysical Society(IBS)organized by Department of Biophysics & center for excellence in Basic Science, University of Mumbai during 13th-16th January (2013). 20. Sowmya B. Jhample, Shambhavi S. Potdar, Gangadhar D. Chakre, Bajarang V. Kumbhar, Kailas D. Sonawane.Homology modeling of m1G37 methyltransferase [trmD] a tRNA modifying enzyme from Desulphobacteriumautotrophicum HRM2. In “Accelerating Biology 2013:” organized by Bioinformatics group, Center for Development of Advanced Computing Pune India 15th-17th February (2013). 21. Asmita D Kamble, Susmit B Sambhare, Bajarang V. KumbharNavanath M Kumbhar, Rohit S. Bavi and Kailas D. Sonawane1*“Conformational study of hypermodified nucleosides 5taurinomethyluridine (tm5U) and its derivative 5-taurinomethyl-2-thiouridine (tm5S2U) using RM1 method. Page-49-50, Second national conference on “Biotechnology, Bioinformatics and Bioengineering” organized by Society for Applied Biotechnology (India) 24-25th February, 2012. 22. Bajarang V. Kumbhar and Kailas D. Sonawane“Molecular dynamics simulation study of model anticodon stem loop structure of tRNA containing hypermodified nucleosides ac4C at 34th and mS2hn6Ade at 37th position” Page-68-69, in “Symposium on Accelerating Biology 2012: Computing to decipher”, organized by Bioinformatics group, Center for Development of Advanced Computing C-DAC Pune, India 15-17th February 2012. 23. Rohit S. Bavi, Asmita D Kamble, Susmit B Sambhare, Bajarang V. KumbharNavanath M Kumbhar and Kailas D. Sonawane1*“Molecular dynamics simulation study of modified nucleosides N2-methylgaunosine, m2G present at the hinge region (26th position) of tRNA” Page 92, in “Symposium on Accelerating Biology 2012: Computing to decipher” organized by Bioinformatics group, Center for Development of Advanced Computing PuneIndia 1517th February 2012. 24. Sagar H Barage, Chidamber B Jalkute, Maruti J Dhanwade and Kailas D Sonawane “Molecular dynamic simulation of whole ECE-1 enzyme with lipid bilayer” Page-93 , “Symposium on 18 Accelerating Biology 2012: Computing to decipher” organized by Bioinformatics group, Center for Development of Advanced Computing PuneIndia 15-17th February 2012. 25. Maruti J DhanwadeSagar H Barage, Chidamber B Jalkute, and Kailas D Sonawane “Molecular Docking and MD simulation study of aminopeptidase and Aβ peptide” Page-78, Symposium on “Accelerating Biology 2012: Computing to decipher” organized by Bioinformatics group, Center for Development of Advanced Computing PuneIndia 15-17th February 2012. 26. Susmit B Sambhare, Navanath M Kumbhar, Bajarang V. Kumbhar and Kailas D. Sonawane1*“MD simulation study to investigate role of hypermodified nucleoside lysidine, (k2C) in proper codon-anticodon recognition” Page-105-106, in “Symposium on Accelerating Biology 2012: Computing to decipher” organized by Bioinformatics group, Center for Development of Advanced Computing PuneIndia 15-17th February 2012. 27. Chidambar B. Jalkute, Sagar H. Barage, Maruti J. Dhanawade and Kailas D. Sonawane“Virtual screening and molecular dynamics simulation study of ACE inhibitors” P24, ‘Conference on Informatics & Integrative Biology (CIIB-2011)’ organized by Bioinformatics centre, Bose institute, Kolkata, India. 14-16 December 2011. 28. Asmita D. Kamble, Susmit B. Sambhare, Bajarang V. Kumbhar, Navanath V. Kumbhar, Rohit. S. Bavi, and Kailas D. Sonawane “Molecular dynamics simulation study of hypermodified nucleoside 5- taurinomethyluridine (τm5U) and its derivative 5-taurinomethyl-2-thiouridine (τm5s2U) occur at ‘wobble’ position in the anticodon loop of tRNA.” P25, ‘Conference on Informatics & Integrative Biology (CIIB-2011)’ organized by Bioinformatics centre, Bose institute, Kolkata, India 14-16 December 2011. 29. Navanath M. Kumbhar and Kailas D. Sonawane “Analysis of compiled tRNA sequence database containing modified nucleoside in anticodon loop of tRNA” in ‘Recent Trends in Life Sciences-2011’ Page no.81, organized by Department of Biochemistry, Shivaji University, Kolhapur, 4-5 March 2011. 30. Sagar H. Barage, Chidambar C. Jalkute and Kailas D. Sonawane“Virtual screening and molecular dynamics simulation study of ECE protease inhibitors” Page No 84, BIF-7, ‘Recent Trends in Life Sciences-2011’, Department of Biochemistry, Shivaji University, Kolhapur, March 4-5, 2011. 31. Susmit B. Sambhare, Navanath M. Kumbhar and Kailas D. Sonawane “Structural Bioinformatics Unit, Department of Biochemistry, Shivaji University kolhapur- 416 004.“Role of hypermodified nucleoside lysidine (k2C) in proper codon-antocodon recognition”, in ‘Recent Trends in Life Sciences-2011’ page no.82, organized by Department of Biochemistry, Shivaji University, Kolhapur. 4-5 March 2011. 32. Bajarang V. Kumbhar, Navanath V. Kumbhar, Asmita D. Kamble and Kailas D. Sonawnae. “Conformational preferences of the hypermodified nucleosides hn6A and ac4C present in the model anticodon loop segment of tRNA.” in ‘Recent Trends in Life Sciences-2011’ Page no.80, organized by Department of Biochemistry, Shivaji University ,Kolhapur. 4-5 March 2011. 33. Gangadhar. D. Chakre, Shambhavi S. Potdar, Souamya B. Jhample and Kailas D. Sonawane “In-silico study of M1G37 methyltransferease enzyme (trmD) from desulphobacetriumautotrophicum HRM2” National level workshop cum seminar on “BioResource for Bio-Industries and Economic Zoology”, 24th-25th Jan-2011. Organized by Department of Zoology, D.B.F. Dayanand College of Arts and Science, Solapur (M.S.) India. 34. Susmit B. Sambhare, Bajarang V. Kumbhar, Navanath V. Kumbhar, Asmita D. Kamble and Kailas D. Sonawane “Conformational study and base stacking interactions of hypermodified nucleoside lysidine (k2C) incorporated in the trinucleotide segment of anticodon loop of tRNAIle” “Accelerating Biology”, Center for Development of Advanced Computing (CDAC) Pune, India, December 14-16, 2010. 19 35. Rohit S. Bavi, Asmita D. Kamble, Susmit B. Sambhare, Navanath V. Kumbhar, Bajarang V. Kumbhar,andKailas D. Sonawane “Structural role of modified nucleotide m2G and m22G inserted in the model diphosphate nucleotide segment of hyperthermophilictRNAs”, “Accelerating Biology”, Center for Development of Advanced Computing (C-DAC) Pune, India, December 14-16, 2010. 36. Sagar H. Barage, Chidambar C. Jalkute and Kailas D. Sonawane, “Molecular Dynamics (MD) Simulation Study of Endothelin Converting Enzyme (ECE) with its Inhibitor Phosphoramidon and β-Amyloid Peptide, “Accelerating Biology”,Center for Development of Advanced Computing (C-DAC) Pune, India, December 14-16, 2010. 37. Asmita D. Kamble, Bajarang V. Kumbhar, Navanath V. Kumbhar, Rohit. S. Bavi, Kailas D. Sonawane, “Conformational preferences of hypermodified nucleoside 5-taurinomethyluridine (τm5U) and its derivative 5-taurinomethyl-2-thiouridine (τm5s2U) occur at ‘wobble’ position in the anticodon loop of tRNA”, “Accelerating Biology”, Center for Development of Advanced Computing (C-DAC) Pune, India, December 14-16, 2010. 38. Bajarang V. Kumbhar, Navanath V. Kumbhar, Asmita D. Kamble, Rohit S. Bavi,Susmit B. Sambhare and Kailas D. Sonawane, “Structural significance of hypermodified nucleoside N6hydroxynorvalylcarbamoyl adenine, hn6Ade and ms2hn6Ade inserted in the trinucleotide segment of anticodon loop of tRNA, “Accelerating Biology”, Center for Development of Advanced Computing (C-DAC) Pune, India, December 14-16, 2010. 39. Bavi R. S., Kumbhar B. V., Kumbhar N. M. and Sonawane K. D.“Conformational preferences of modified nucleoside 2-methylguanosine (m2G) and its related derivatives occur at 26th position in tRNA of hyperthermophiles”50th Annual Conference of Association of Microbiologists in India (AMI), National Chemical Laboratory (NCL), Pune, (GM088), Page no. 197, 18 Dec.2009. 40. Jalkute C.B., Barage S.H., Sonawane K.D. “Homology modeling study of Angiotensin Converting Enzyme from Stigmatellaaurantiaca”. 50th annual conference of Association of Microbiologists in India (AMI), National Chemical Laboratory (NCL), Pune, (GM087), Page no. 197, 15-18 Dec.2009. 41. Navanath M. Kumbhar,Abhinandan B. kadam, Bajarang V. Kumbhar, Kailas D. Sonawane. “Quantum chemical study of hypermodified nucleoside, Hydroxywybutosine (yWOH) present in the anticodon loop of tRNAphe”Challenges and Opportunities in Information Technology and Bioinformatics (NCCOITBT-09), Swami VivekanandMahavidyalaya, Udgir,Latur, India, February, 27-28, 2009. 42. Abhinandan B. Kadam, Navanath M. Kumbhar,Bajarang V, Kumbhar, Kailas D. Sonawane. “Structural study of modified nucleosides m22G and m22Gm occur at 26th position in tRNA of hyperthermophilic bacteria” Challenges and Opportunities in Information Technology and Bioinformatics (NCCOITBT-09), Swami VivekanandMahavidyalaya, Udgir, Latur, India, February, 27-28, 2009. 43. Bajarang V. Kumbhar and Kailas D. Sonawane. “Conformational preferences of HypermodifiedNucelotides Present in the Anticodon Loop of tRNA”. “Frontiers in Computational Biology”, Center for Development of Advanced Computing (C-DAC) Pune, India, July 23-24, 2009. 44. Uddhavesh B. Sonavane, Kailas D. Sonawane and RavindraTewari. “Hypermodified Wobble Nucleoside Queuosine in tRNAAsp Anticodon Loop and Significance of Modified Nucleoside Lysidine in Mycoplasma CapricolumtRNAIle, National Symposium on Biophysics, TIFR, Mumbai, India, 21-23 February, 2003. 45. Kailas D. Sonawane, Uddhavesh B. 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