Chromosome 1 Additive model
160
140
120
0
132
265
397
530
P < 0.05
P < 0.01
LRT
100
80
60
40
20
0
1
4
7
10 13 16 19 22 25 28 31 34 37 40 43 46 49 52 55 58 61 64 67 70 73 76 79 82 85 88 91
snp
Chromosome 2 Additive model
30
25
LRT
20
0
132
265
397
530
P < 0.05
P < 0.01
15
10
5
0
1
4
7 10 13 16 19 22 25 28 31 34 37 40 43 46 49 52 55 58 61 64 67 70 73 76 79 82 85 88 91 94 97
snp
Chromosome 3 Additive model
16
14
12
0
132
265
397
530
P < 0.05
P < 0.01
LRT
10
8
6
4
2
0
1
4
7 10 13 16 19 22 25 28 31 34 37 40 43 46 49 52 55 58 61 64 67 70 73 76 79 82 85 88 91 94 97
snp
Chromosome 4 Additive model
30
25
LRT
20
0
132
265
397
530
P < 0.05
P < 0.01
15
10
5
0
1
4
7
10 13 16 19 22 25 28 31 34 37 40 43 46 49 52 55 58 61 64 67 70 73 76 79 82 85
snp
Chromosome 5 Additive model
14
12
10
0
132
265
397
530
P < 0.05
P < 0.01
LRT
8
6
4
2
0
1 3 5 7 9 11 13 15 17 19 21 23 25 27 29 31 33 35 37 39 41 43 45 47 49 51 53 55 57 59 61 63 65 67 69 71 73 75 77 79 81 83
snp
Chromosome 4 Dominance model
8
7
6
0
132
265
397
530
P < 0.05
P < 0.01
LRT
5
4
3
2
1
0
1
4
7
10 13 16 19 22 25 28 31 34 37 40 43 46 49 52 55 58 61 64 67 70 73 76 79 82 85
snp
Chromosome 5 Dominance Model
7
6
5
0
132
265
397
530
P < 0.05
P < 0.01
LRT
4
3
2
1
0
1 3 5 7 9 11 13 15 17 19 21 23 25 27 29 31 33 35 37 39 41 43 45 47 49 51 53 55 57 59 61 63 65 67 69 71 73 75 77 79 81 83
snp
Chromosome 2 imprinting model
7
6
5
0
132
265
397
530
P < 0.05
P < 0.01
LRT
4
3
2
1
0
1
4
7 10 13 16 19 22 25 28 31 34 37 40 43 46 49 52 55 58 61 64 67 70 73 76 79 82 85 88 91 94 97
snp
Chromosome 3 Imprinting model
4.5
4
3.5
3
0
132
265
397
530
P < 0.05
LRT
2.5
2
1.5
1
0.5
0
1
5
9
13
17
21
25
29
33
37
41
45
49
53
57
61
65
69
73
77
81
85
89
93
97
snp
Chromosome 4 Imprinting model
9
8
7
6
0
132
265
397
530
P < 0.05
P < 0.01
LRT
5
4
3
2
1
0
1
4
7
10 13 16 19 22 25 28 31 34 37 40 43 46 49 52 55 58 61 64 67 70 73 76 79 82 85
snp
Figure S2. QTL curves for VC analyses under additive (page 1,2), dominant (p3) and
imprinting (p4) models. All test statistics are against the H0 of no QTL.