ESMTable2.Summarydataof72SNPsrepresentingpreviouslypublishedBMIloci.‘Chr.’=chromosome,‘HGb37’=humangenome
build-37,‘HWEP’=Hardy-WeinbergP-valuebasedonbest-guessgenotypesderivedfromimputation.
Published
BMILocus
AGBL4
ELAVL4
NEGR1
FPGT-TNNI3K
FUBP1
PTBP2
GNAT2
SEC16B
NAV1
TMEM18
ADCY3
KCNK3
LINC01122
EHBP1
LRP1B
UBE2E3
ERBB4
RARB
FHIT
GBE1
CADM2
RASA2
ETV5
GNPDA2
SNP
rs657452
rs11583200
rs3101336
rs12566985
rs12401738
rs11165643
rs17024393
rs543874
rs2820292
rs13021737
rs10182181
rs11126666
rs1016287
rs11688816
rs2121279
rs1528435
rs7599312
rs6804842
rs2365389
rs3849570
rs13078960
rs16851483
rs1516725
rs10938397
Chr.
1
1
1
1
1
1
1
1
1
2
2
2
2
2
2
2
2
3
3
3
3
3
3
4
Position
(HGb37)
49,589,847
50,559,820
72,751,185
75,002,193
78,446,761
96,924,097
110,154,688
177,889,480
201,784,287
632,348
25,150,296
26,928,811
59,305,625
63,053,048
143,043,285
181,550,962
213,413,231
25,106,437
61,236,462
81,792,112
85,807,590
141,275,436
185,824,004
45,182,527
Effect
Allele
A
C
C
G
A
T
C
G
C
G
G
A
T
G
T
T
G
G
C
A
G
T
C
G
Other
Allele
G
T
T
A
G
C
T
A
A
A
A
G
C
A
C
C
A
A
T
C
T
G
T
A
N
116,549
116,937
119,688
118,939
118,615
118,771
119,507
119,688
119,688
118,673
118,496
118,497
118,602
115,250
118,337
119,321
114,229
116,777
117,861
118,926
118,362
119,625
118,998
119,688
EffectAllele
Frequency
0.391
0.387
0.600
0.438
0.382
0.593
0.025
0.209
0.567
0.832
0.486
0.254
0.300
0.548
0.124
0.622
0.737
0.576
0.593
0.347
0.200
0.066
0.864
0.434
Best-Guess
HWEP
0.016
0.004
0.962
0.226
0.084
0.014
0.352
0.507
0.428
0.620
0.719
0.383
0.710
0.585
0.873
0.676
0.573
1.0E-04
0.345
0.702
0.677
0.925
0.350
0.038
Imputation
Quality
0.987
0.987
1.000
0.995
0.995
0.996
0.989
1.000
1.000
0.991
0.995
0.995
0.994
0.981
0.987
0.997
0.973
0.988
0.993
0.995
0.992
0.999
0.995
1.000
SLC39A8
HHIP
POC5
C6orf106
TFAP2B
FOXO3
PARK2
HIP1
PMS2L11
HNF4G
RALYL
C9orf93
LINGO2
EPB41L4B
TLR4
LMX1B
GRID1
HIF1AN
NT5C2
TRIM66
BDNF
HSD17B12
MTCH2
CADM1
BCDIN3D
CLIP1
MTIF3
OLFM4
STXBP6
rs13107325
rs11727676
rs2112347
rs205262
rs2207139
rs9400239
rs13191362
rs1167827
rs2245368
rs17405819
rs2033732
rs4740619
rs10968576
rs6477694
rs1928295
rs10733682
rs7899106
rs17094222
rs11191560
rs4256980
rs11030104
rs2176598
rs3817334
rs12286929
rs7138803
rs11057405
rs9581854
rs12429545
rs10132280
4
4
5
6
6
6
6
7
7
8
8
9
9
9
9
9
10
10
10
11
11
11
11
11
12
12
13
13
14
103,188,709
145,659,064
75,015,242
34,563,164
50,845,490
108,977,663
163,033,350
75,163,169
76,608,143
76,806,584
85,079,709
15,634,326
28,414,339
111,932,342
120,378,483
129,460,914
87,410,904
102,395,440
104,869,038
8,673,939
27,684,517
43,864,278
47,650,993
115,022,404
50,247,468
122,781,897
28,017,782
54,102,206
25,928,179
T
T
T
G
G
C
A
G
C
T
C
T
G
C
T
A
G
C
C
G
A
T
T
G
A
G
T
A
C
C
C
G
A
A
T
G
A
T
C
T
C
A
T
C
G
A
T
T
C
G
C
C
A
G
A
C
G
A
119,688
119,688
119,688
119,212
119,545
118,089
118,665
119,688
119,688
119,360
119,688
119,197
119,688
117,585
119,680
109,718
119,064
114,710
119,685
118,229
119,568
119,688
119,688
119,177
119,688
119,688
117,920
117,103
114,325
0.074
0.903
0.640
0.268
0.169
0.709
0.876
0.565
0.167
0.702
0.744
0.553
0.324
0.353
0.571
0.471
0.049
0.206
0.076
0.657
0.797
0.246
0.408
0.525
0.369
0.894
0.179
0.126
0.706
0.069
0.805
0.071
0.763
0.727
0.944
0.884
0.173
0.320
0.934
0.244
0.735
0.864
0.829
0.403
0.325
0.853
0.935
0.069
0.723
0.412
0.436
0.417
0.750
0.446
0.030
0.028
0.731
0.865
1.000
1.000
1.000
0.997
0.999
0.992
0.990
1.000
1.000
0.998
1.000
0.998
1.000
0.990
1.000
0.958
0.986
0.969
1.000
0.993
0.999
1.000
1.000
0.991
1.000
1.000
0.986
0.978
0.975
PRKD1
PRKD1
NRXN3
DMXL2
MAP2K5
NLRC3
GPRC5B
SBK1
ATP2A1
FTO
RABEP1
RPTOR
C18orf8
GRP
MC4R
PGPEP1
KCTD15
QPCTL
ZC3H4
rs12885454
rs11847697
rs7141420
rs3736485
rs16951275
rs758747
rs12446632
rs2650492
rs3888190
rs1421085
rs1000940
rs12940622
rs1808579
rs7243357
rs6567160
rs17724992
rs29941
rs2287019
rs3810291
14
14
14
15
15
16
16
16
16
16
17
17
18
18
18
19
19
19
19
29,736,838
30,515,112
79,899,454
51,748,610
68,077,168
3,627,358
19,935,389
28,333,411
28,889,486
53,800,954
5,283,252
78,615,571
21,104,888
56,883,319
57,829,135
18,454,825
34,309,532
46,202,172
47,569,003
C
T
T
A
T
T
G
A
A
C
G
G
C
T
C
A
G
C
A
A
C
C
G
C
C
A
G
C
T
A
A
T
G
T
G
A
T
G
119,014
119,688
115,333
116,461
119,450
114,180
119,655
115,534
119,259
119,688
119,056
119,227
119,194
118,054
119,099
117,156
119,688
116,603
119,688
0.642
0.044
0.517
0.463
0.775
0.273
0.858
0.294
0.403
0.402
0.300
0.559
0.517
0.827
0.234
0.735
0.672
0.822
0.677
0.787
0.391
0.488
0.514
0.325
0.174
0.896
0.983
0.585
0.938
0.005
0.756
0.269
0.297
0.473
0.125
0.137
0.129
0.198
0.996
1.000
0.984
0.987
0.998
0.972
1.000
0.981
0.998
1.000
0.996
0.998
0.998
0.990
0.997
0.983
1.000
0.979
1.000