Epigenetics of the male gamete Douglas T. Carrell, Ph.D., H.C.L.D. Departments of Surgery (Urology), Obstetrics and Gynecology, and Physiology, University of Utah School of Medicine, Salt Lake City, Utah Objective: To review and summarize the current understanding of the epigenetic status of human sperm in regards to protamination, specific localization and modifications of retained histones, and DNA methylation. Design: Review of the relevant literature. Setting: University-based clinical and research laboratories. Patient(s): Fertile and infertile men. Intervention(s): None. Main Outcome Measure(s): Critical review of the literature. Result(s): Sperm from normospermic, fertile men have epigenetic modifications consistent with gene ‘‘poising’’ at the promoters of genes involved in development, including the localization of retained histones with bivalent histone modifications and hypomethylation of DNA. These epigenetic marks are altered in some patients with abnormal spermatogenesis, and in some men who exhibit unexplained, altered embryogenesis during IVF therapy. Conclusion(s): The sperm epigenome implies a poising of the paternal genome for embryogenesis and a possible role in the establishment of totipotency of the embryo and may help in understanding some causes of reduced fertility and transmission of disease risk. (Fertil SterilÒ 2012;97:267–74. Ó2012 by American Society for Reproductive Medicine.) Key Words: Epigenetics, methylation, histones, protamines, transcription, embryogenesis I t is interesting, and perhaps of special note to reproductive biologists, that the field of epigenetics is related to one of the great historical debates of embryology. This debate can be distilled to a disagreement between whether development of an organism was the result of growth and expansion of ‘‘pre-formed’’ elements (the school of ‘‘preformation’’) or the result of chemical reactions within cells that are sequentially executed to result in a mature organism (the school of ‘‘epigenesis’’) (1, 2). The discovery during the 20th century that chromosomes contained heritable components, followed by the elucidation of the structure of DNA and the deciphering of the genetic code, progressively lent strong credence to and helped refine the concept of epigenesis, but how the identical genetic sequences in the cells of an embryo ultimately resulted in a fully differentiated individual remained, and continues to be, the central question of developmental biology (3). Epigenetics is defined as ‘‘the study of mitotically and/or meiotically heritable changes in gene function that cannot be explained by changes in DNA sequence’’ (4). These ‘‘epigenetic’’ components not only have a profound impact on developmental processes but also have relevance in many diverse areas of biology and medicine, including cancer biology, the study of environmental effects, and the study of aging (5, 6). Sperm cells are unique in their morphology and function. Historically, sperm have been viewed as specialized delivery capsules containing, and perhaps protecting during transport, a high-value cargo of 23 chromosomes to the oocyte. Although the oocyte similarly contributes 23 chromosomes to the embryo, the disparate sizes of the two gametes, as well as the obvious unbalanced contribution of the oocyte to the embryo’s complement of cellular organelles, RNAs, and cellular machinery, have in some cases minimized the Received December 13, 2011; revised December 19, 2011; accepted December 20, 2011. D.T.C. has nothing to disclose. Reprint requests: Douglas T. Carrell, Ph.D., H.C.L.D., Andrology and IVF Laboratories, University of Utah School of Medicine, 675 S. Arapeen Dr. #205, Salt Lake City, UT 84108 (E-mail: douglas. [email protected]). Fertility and Sterility® Vol. 97, No. 2, February 2012 0015-0282/$36.00 Copyright ©2012 American Society for Reproductive Medicine, Published by Elsevier Inc. doi:10.1016/j.fertnstert.2011.12.036 VOL. 97 NO. 2 / FEBRUARY 2012 potential contribution of the sperm to successful embryogenesis (7). Nevertheless, some studies, and numerous anecdotal observations, have hinted at a potential role of sperm contribution to embryogenesis (8–10). Therefore, understanding the epigenetics of sperm may contribute to understanding paternal effects on embryogenesis, as well as a better understanding of germ cell biology and the pluripotency of embryonic stem cells. This brief review will describe the current understanding of sperm epigenetics by focusing on three main areas: the extensive modifications to sperm chromatin as a result of the removal of histones during spermiogenesis and their replacement with protamines, the chemical modifications seen in histones retained in sperm chromatin, and the methylation to the sperm DNA itself. Each of these three types of modifications that are present in human sperm are potent modulators of gene transcription, and recent data suggest they may be factors that affect transcriptional regulation during embryogenesis. The role of noncoding RNAs, which are also found in sperm, is reviewed by Hamatani et al. (11) in a companion article. A brief discussion of future avenues of study will be highlighted. 267 VIEWS AND REVIEWS CHROMATIN MODIFICATIONS DURING SPERMIOGENESIS Normal human fertilization is a demanding event during which sperm are required to traverse a potentially hostile and barrier-laden female reproductive tract, penetrate the cumulus oophorus, bind to and penetrate the zona pellucida, fuse to the oolemma and penetrate into the oocyte, then complete multiple post-penetration events (12). To accomplish these functions, the sperm cell has an extremely specialized architecture, including dramatic changes to the chromatin structure by replacement of most (90%–95%) of the histones with protamines (13). Protamination of the sperm chromatin facilitates the nuclear compaction necessary for sperm motility and helps to protect the genome from oxidizing and from other harmful molecules within the female reproductive tract (13). In addition, the higher order of packaging of the DNA after protamination precludes transcriptional activity; therefore, protamination is a nontraditional form of epigenetic regulation that is unique to sperm cells. The transition of sperm nuclear proteins from canonical histones to protamines is a multistep process that is still poorly understood; however, certain events have been described. Early transition events include the replacement of select histones with histones variants that are expressed during spermatogenesis, including testis-specific histone 2B, the most abundant histone variant found in mature sperm (14). Testis-specific histone 2B has been of particular interest because of its unique expression pattern of not undergoing 30 -transcript polyadenylation and because it has been shown through immunohistologic studies to locate in the telomeres of sperm chromosomes (15). Concomitant to replacement of some histones with variants, there is an increase of acetylation of other histones. This hyperacetylation appears to be the trigger to the subsequent cascade of events that ultimately results in protamine replacement (16). Acetylation is regulated by the interplay of both acetylases and deacetylases, and one regulator appears to be pygopus 2, which is a plant homeodomain protein that acts as a cofactor to Wnt signaling effector complexes (17). Hyperacetylation of histones results in a ‘‘relaxed’’ chromatin structure that may be important in facilitating the role of topoisomerase-induced strand breaks and removal of histones and their replacement with transition proteins (18, 19). Testis-specific bromodomain-containing protein (BRDT) has been shown to interact with acetylated histone and induce chromatin compaction and differential retention of the hyperacetylated regions, thus appearing to be a key factor in the reorganization of sperm chromatin (20, 21). Transition proteins 1 and 2 (TP1 and TP2) are proteins of intermediate basicity that are found in stages 12 and 13 of spermatogenesis, but are removed by stage 14 of spermatogenesis. The proteins bind to the DNA, facilitate removal of histones, and appear to be critical for subsequent events in protamine compaction (22). Knock-out of one transition protein results in infertility of the affected mice; however, there does appear to be some incomplete compensation by the remaining transition protein (23). Interestingly, sperm from TP knock-out mice become less fertile as they progress 268 through the epididymis, hinting that a possible consequence of abnormal TP expression may be progressively increased DNA damage during epididymal transport (24). Next, transition proteins are completely replaced by protamines. Humans express two protamines, protamine 1 and protamine 2 (P1 and P2), which are expressed in roughly equal quantities (25). There is considerable overlap in the expression of the genes for transition proteins and protamines, and the proteins also show some overlap, but both the transcripts and the proteins undergo unique translational regulation that facilitates proper temporal regulation that is necessary for proper protein function (26). Key posttranslational modifications include phosphorylation, which is necessary for proper chromatin condensation (27). Improper processing of the protamine transcripts can result in increased retention of immature P2 precursors, a condition associated with subfertility (28, 29). Subfertility is also associated with an altered P1/P2 ratio (13, 30). Although conflicting data have been reported, altered protamine expression has been reported to be related to a broad range of phenotypes, including diminished sperm counts, decreased sperm function, and diminished embryo quality during IVF (26, 31–33). It is of note that most studies evaluating abnormal protamine expression have evaluated the mean P1/P2 level for an ejaculate; however, protamine replacement is clearly variable between sperm in a given ejaculate (34, 35). It is of note that in infertile men with abnormal protamination, density-gradient centrifugation selects, generally, for sperm with better protamination, also highlighting the heterogeneity of protamination and the possible role of improved sperm selection techniques in improving fertility therapies (36). Proper protamine replacement results in a more efficient chromatin packaging that results in a high level of compaction of the sperm nucleus. Protamine compaction occurs through the formation of disulfide bonds between the protamines and by the formation of toroidal chromatin structures (see Fig. 1) (37). Approximately 50 kb of DNA are packaged in each toroidal subunit (38). However, 5%–10% of DNA in fertile men, and more in some infertile men, remains bound to histones (39, 40). Ward has recently proposed a unique hypothesis on the structural arrangement of histone- and protamine-bound regions of DNA in the mature sperm cell in which each toroid is equivalent to one loop domain of DNA with linker regions associated to matrix attachment regions (Fig. 1) (41, 42). This model emphasizes the protection of protamine-bound DNA from damage by the toroidal compaction and subsequent stacking of toroids, and the vulnerability of linker regions and histone-bound regions to DNA degradation by endonucleases (43). This structural packaging may help explain the correlation between increased histone retention and elevated DNA damage reported in several studies (31, 44, 45). The data indicate that protamination is critical for normal sperm chromatin condensation and protection from damage during transport, as well as an epigenetic role in silencing the regions of the genome bound to protamines (46). Abnormal protamination is a relatively common event in infertile men with abnormal semen analyses but relatively rare in VOL. 97 NO. 2 / FEBRUARY 2012 Fertility and Sterility® FIGURE 1 Chromatin remodeling and epigenetic modifications in human sperm. DNA methylation is the first line of epigenetic modification of chromatin through methylation of position of cytosines found in CpG dinucleotides. An intermediate step in demethylation is the formation of 5-hydroxymethylcytosine residues, which are also observed in mature sperm. DNA is bound to histone octamers with unique modifications that present a second level of regulation of gene transcription. Most histones are removed from the elongating spermatid and replaced with protamines that result in a higher order of DNA packaging and silence gene expression. Retained histones are interspersed between protamine toroids and may be bound to matrix attachment regions, which facilitates replication of loop domains in the embryo. Carrell. Epigenetics of the male gamete. Fertil Steril 2012. men with known fertility and normal semen quality (29, 47). Protamination can be assessed using various techniques, varying from histone-specific stains to purification and quantification of the nuclear proteins, with a common reporting measure being the ratio of protamine 1 to protamine 2 (P1/P2 ratio) (48, 49). Generally, most reports have shown that abnormal protamine replacement of histones is associated with decreased semen quality, and in some reports, diminished IVF embryo quality and pregnancy rates (30, 33, 50, 51). HISTONE VARIANTS AND MODIFICATIONS IN HUMAN SPERM Until recently, the utility of retaining histones in the sperm nucleus was not understood and was largely considered the result of inefficient or leaky protamination. Although protamination is a sperm-specific epigenetic modification, the more classical epigenetic factors include histone modifications, DNA methylation variability, and the action of microVOL. 97 NO. 2 / FEBRUARY 2012 RNAs. Recent studies indicate that retained histones are central to the epigenetic status of sperm, are not randomly distributed throughout the genome, and that unique histone modifications that help regulate genome activation and silencing also appear to be programmatically distributed in the sperm genome (39, 52, 53). These data imply that sperm chromatin may transmit epigenetic mechanisms that affect postfertilization transcriptional regulation (53). Nucleosomes are octamers composed of two dimers of H3-H4 histones and two dimers of H2A-H2B, with each nucleosome linked by histone H1 (54). Histones are unique proteins in that they are able to undergo relatively simple chemical modifications that drastically alter their binding to DNA and the accessibility of other regulatory factors to the DNA, thereby altering gene activation (55). These chemical modifications are primarily accomplished by modifications of lysine and serine residues on the histone tail, and through phosphorylation, methylation, acetylation, and ubiquitination (56, 57). In addition to chemical modifications, tissue-specific histone variants are present, including 269 VIEWS AND REVIEWS testes-specific histone H2B, which is retained abundantly in mature sperm (14). The modification of histones is dynamic and dependent on specific enzymes, the regulation of which is an active field of study (55). Histones conferring a generally ‘‘active’’ transcription state include acetylation of H3 and H4, which generally facilitates an open chromatin structure and binding of transcription factors (58). Deacetylation, conversely, is associated with an ‘‘inactive’’ transcriptional status, and generally correlates with DNA methylation (59). Histone lysine methylation is another key regulator of activation, with H3K9 and H3K27 histones generally associated with ‘‘inactive’’ status (Table 1) (60). Two recent studies characterized the distribution of retained histones throughout the sperm genome. Arpanahi et al. (61) used endonuclease digestion of human and mouse sperm chromatin to identify endonuclease-sensitive regions and found that endonuclease-sensitive regions were more likely to be histone-bound regions that were largely found to be associated with regulatory regions of the genome, including gene promoters. Our laboratory used a different approach to study this question, using repeated micrococcal nuclease digestion and gel purification, which separates histone-bound chromatin from protamine-bound chromatin. This chromatin purification was followed by microarray analysis and deep sequencing of the histone-bound and protamine-bound DNA to identify, at base pair resolution, the location of histones. From this study, which was performed using sperm from fertile, normospermic controls, the data clearly show enriched retention of the histones at the promoters of gene families involved in development, along with retention in micro-RNAs and imprinted genes. Conversely, protamines were not enriched at any gene family (39). These two studies indicate a potential epigenetic function for retained histones in the developing embryo; however, the biological relevance of protamination and histone function after fertilization has been questioned because sperm protamines are rapidly replaced by oocyte-derived histones in the zygote (62). Therefore, we hypothesized that if an epigenetic role was associated with the retained histones, the location of specific histone variants or modifications would be necessary and would further indicate a consistent, programmatic function. Indeed, subsequent chromatin immunoprecipitation purification of the histone classes, followed by microarray and sequencing studies, elucidated an interesting pattern in which key developmental genes were bivalently marked with H3K4me3 and H3K27me3, similar to bivalently marked developmental genes of embryonic stem cells (39, 63). Regions with this bivalent marking are also DNA demethylated (discussed in detail below), which together strongly indicated a ‘‘poised’’ state. Interestingly, regions of the genome enriched for testesspecific histone H2B, which makes up a significant portion of retained histones, were enriched in the promoters of genes for ion channels and genes involved in spermatogenesis, but not developmental genes, indicating a ‘‘historical’’ epigenetic record of spermatogenesis. Histone variant H2AZ, which has been implicated in poising in certain cell types, was enriched in pericentromeric heterochromatin regions, which had previously been reported in immunostaining studies (8, 64). 270 Regions enriched with H3K4me3, but not bivalent for H3K4me3 and H3K27Me, also appear to be enriched for spermatogenesis-related genes, whereas H3K4me2 regions are enriched for developmental genes. Thus, the histone packaging appears to be both a historical record of spermatogenesis and a future program for developmental processes (8). It is of interest to note that a recent study characterized histone modifications genomewide in zebrafish, a species that does not use protamination to condense sperm chromatin. Wu et al. (65) reported that the zebrafish sperm genome was similar to the human sperm genome in that there were both activating and silencing histone modifications that were similar to the patterns observed in human sperm. Activating modifications were seen at genes involved in spermatogenesis (a historical record), and in combination with silencing modifications (bivalency or in some cases multivalency) at developmental gene promoters (a possible future plan). Methylation patterns were also similar to human sperm methylation. Wu et al. were also able to correlate the level of activating marks with actual temporal expression of genes in the embryo. This study is a fascinating validation of the concept of a sperm epigenetic role in a species distant from humans with a distinct chromatin packaging organization void of protamines and transition proteins (66). SPERM DNA METHYLATION DNA methylation is a potent epigenetic mark that promotes gene silencing, is essential to allele-specific imprinting of certain genes, and is key in X chromosome inactivation (67, 68). Methylation occurs at the 5-carbon position of cytosines found in cytosine-phosphate-guanine dinucleotides (CpGs) through the action of the DNMT family of proteins, which are responsible for both the initiation of methylation and subsequent maintenance of methylation marks (69). Cytosine-phosphate-guanine dinucleotides found in high concentrations near the gene promoter are termed ‘‘CpG islands’’ and are potent inhibitors of transcription when methylated (70). This inhibition or permissive role of CpGs dependent on their methylation status is accomplished largely through recruitment and/or binding of other factors directly involved in transcription (71, 72). In addition, genetic elements, including base pair sequence, influence the methylation status of CpGs (73). After fertilization, paternal DNA is actively demethylated and the maternal DNA undergoes passive demethylation (74). Although the demethylation is extensive, the specific regions of demethylation are unknown. Subsequently, in the primordial germ cells, the maternal and paternal germ lines are reset, resulting in remodeling of the parental-specific methylation patterns of imprinted genes (75). Tissue-specific methylation is also continued throughout development (Fig. 2) (76). Therefore, the role of sperm methylation in the epigenetic regulation of embryonic events is not well understood, and it will require evaluation of the methylome of not only the sperm but also of the embryo. The genomewide study of sperm histone localization described above also included an analysis of methylation status at gene promoters. Bivalently and monovalently marked VOL. 97 NO. 2 / FEBRUARY 2012 Fertility and Sterility® FIGURE 2 Summary of critical chromatin and DNA methylation modification in sperm, the embryo, and primordial germ cells. Key chromatin changes are demonstrated by the protamination of sperm during spermiogenesis, followed by replacement of protamines with histones at the pronuclear stage of embryogenesis. The active demethylation of sperm DNA after fertilization is contrasted with passive demethylation of maternally derived DNA. Resetting of imprinting occurs in the primordial germ cells and tissue-specific methylation changes occur throughout development. Carrell. Epigenetics of the male gamete. Fertil Steril 2012. promoters of developmental genes were shown to be hypomethylated regions of DNA, consistent with the ‘‘poised’’ state of bivalently marked genes of embryonic stem cells (39). This finding supports the hypothesis of a potential embryonic role for the sperm genome, although much is yet to be studied and determined. Recently, the methylome of human sperm has been reported (77). This study confirmed the generally hypomethylated state of developmental gene promoters and highlighted that these hypomethylated regions are broader and more deeply hypomethylated than hypomethylated promoter regions seen in somatic cells (77). Although the studies described above are associational only, they complement a potential epigenetic hypothesis of epigenetic programming in sperm in which key developmental genes are poised, but not yet actively marked, for rapid activation in development by their hypomethylation of DNA at regulatory regions along with simultaneous activating and silencing histone modifications, as opposed to the vast majority of the genome that is silenced by protamine binding and a small fraction of the genome bound to histone with silencing modifications. These promoter regions of DNA are also hypomethylated, further poising the gene for activation (78). INVESTIGATION OF CHROMATIN MODIFICATIONS IN SPERM OF INFERTILE MEN Studies have shown a small, but significantly increased, risk of offspring with imprinting disorders in couples undergoing IVF VOL. 97 NO. 2 / FEBRUARY 2012 and intracytoplasmic sperm injection (79, 80). Therefore, the methylation status of imprinted genes in the sperm of infertile men has been studied extensively and generally shown altered methylation in the imprinted genes of oligozoospermic men compared with controls (81–83). Elevated methylation defects of imprinted genes has also been observed in other pathologies, including men with obstructive azoospermia undergoing testicular aspiration of sperm, men with known defects of protamination, and patients with idiopathic infertility (84–86). It is important to consider that the rates of abnormalities seen in the sperm of infertile men are manyfold higher than the rates of affected offspring, which highlights the potential corrective abilities of the embryo and primordial germ cells in methylation ‘‘resetting.’’ In addition, the selection of the most morphologically normal sperm during intracytoplasmic sperm injection from the heterogeneous pool of sperm in a given ejaculate may decrease the risk of transmission of the observed methylation defects and be a factor in the disparity of sperm abnormalities versus transmission of disease. Given the poising nature of developmental genes, it is also of interest to study the methylation status of nonimprinted genes, particularly development-related genes and micro-RNAs. Our laboratory recently reported that no gross methylation defects were seen, on average, in the promoters of OCT4, SOX2, NANOG, HOCC11, and miR-17 in men with known abnormalities of protamination, a population previously shown to have elevated risk of defects of 271 VIEWS AND REVIEWS TABLE 1 Summary of activating and silencing histone modifications relevant to sperm. Modification Acetylation of H3 Acetylation of H4 Ubiquitination of H2B H3K4me2 H3K4me3 Ubiquitination of H2A H3K9me H3K27me3 H3K4me3 and H3K27me3 Activating Silencing Bivalency X X X X X X X X X Carrell. Epigenetics of the male gamete. Fertil Steril 2012. methylation of imprinted genes (86, 87). However, defects were observed in the CREM gene, which may be more of a reflection and/or cause of abnormal spermatogenesis (87, 88). Recently, we have evaluated the methylation status of sperm genomewide in two populations of infertile patients, men with abnormal protamination and men with unexplained poor embryogenesis during IVF therapy. Interestingly, gross abnormalities were observed in 3 of 28 of the men analyzed, which was confirmed by subsequent bisulfate sequencing (89). Sperm methylation studies are clearly in their nascent stage, but highlight the known association of methylation defects with male infertility. Whether the association is biologically relevant remains to be shown. Although numerous studies have shown abnormal protamination in the sperm of some infertile men, only one study has yet to evaluate localization of histones and characterization of histone modifications genomewide in infertile men (40). Because of the cost associated with such studies, only seven patients were evaluated in this study, four men with known abnormalities of protamination and three men with unexplained, consistently poor embryogenesis during IVF. A gross lack of enrichment of histones at developmental gene promoters was observed in five of the seven patients, but defects of histone modifications were more subtle, in that defects were observed at specific genes but not genomewide. Methylation of developmental genes was altered in some cases, but was also more subtle in most cases (40). These limited studies of infertile men seem to support the hypothesis that sperm epigenetic marks may be programmatic, at least in part, and imply a function during embryogenesis. The observation of abnormalities in IVF patients with unexplained poor embryogenesis is interesting, but it must be confirmed in much larger studies of highly characterized patients. Such studies have been limited because of the costs and difficulties in bioinformatics and data analysis of large genomewide studies. Current efforts are aimed at identifying select candidate alleles that are key factors in embryogenesis, or that are representative of the genome at large, and are predictive of abnormal epigenetic function. CONCLUSIONS The sperm cell has a highly differentiated and specialized morphology that is essential to facilitate fertilization. 272 Similarly, the epigenome of human sperm is unique, elegant, and may be essential to embryogenesis. Key elements of the sperm epigenome include the replacement of most canonical histones with protamines, the elegant retention of histones at key regulatory regions of the genome in a poised state that suggests unique and significant functions in early development, and in complementary hypomethylation of DNA at such regions. Not discussed in this short review, but likely an equally important epigenetic modifier in sperm, are noncoding RNAs found in mature sperm. These epigenetic factors suggest a diverse and critical role of sperm in regulating embryogenesis. Advancement of the field of sperm epigenetics will be dependent on further studies on the basic science of epigenetics, as well as translational studies. The combination of these studies may result in a much deeper understanding of the possible causes of abnormal embryogenesis that is so frequently seen in the IVF clinic, as well as possible causes of recurrent pregnancy loss, developmental anomalies, and other pathologies. In addition, the understanding of the epigenetics of sperm and spermatogonia may be key in understanding the mechanisms of pluripotency, which has broad implications for potential therapies. The sperm epigenome has been characterized before the oocyte or early embryo epigenomes because of the relative ease of obtaining sufficient cells to undertake genomewide studies. However, techniques are now evolving that will allow genomewide assessment of embryos and oocytes, in fact the initial studies of methylation in the oocyte have recently been reported and further studies are ongoing (74, 90). Key to understanding sperm epigenetic ramifications will be a better understanding of the extent and specifics of remodeling that takes place after fertilization. Future studies will likely focus on the epigenetics of both gametes as well as changes observed throughout embryogenesis. Epigenetic regulation is the presumed link between environmental factors and many observed effects (91). Therefore, environmental studies will likely play an ever-increasing role in the possible causes of infertility and in the assessment of risk factors. Included in such studies will be studies evaluating the aging process on epigenetics, and on the heritability of such epigenetic modification. The studies listed above, in addition to further characterization studies, will soon lead to a better understanding of the risk of ‘‘subtle epigenetic abnormalities’’ that are frequently observed and reported in the literature. Such an understanding will be key in the translation of epigenetics to a useful clinical tool. Acknowledgments: I thank Bill Kelly, Ben Emery, and Ki Aston for their assistance in the development of the figures used in this review. REFERENCES 1. 2. 3. Felsenfeld GA. A brief history of epigenetics. In: Allis CD, Jenuwein T, Reinberg D, editors. Epigenetics. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press; 2007. Needham J. A history of embryology. London: Abelard-Schuman Ltd.; 1959. Gilbert SF. Introduction and the origins of developmental genetics. In: Gilbert SF, editor. A conceptual history of modern embryology. Baltimore: Johns Hopkins University Press; 1991. VOL. 97 NO. 2 / FEBRUARY 2012 Fertility and Sterility® 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. 20. 21. 22. 23. 24. 25. 26. 27. 28. 29. Riggs AD, Martinssen RA, Russo VEA. Introduction. In: Epigenetic mechanisms of gene regulation. Cold Spring Harbor, NY: Cold Spring Harbor Press; 1996. Herceg Z, Vaissiere T. Epigenetic mechanisms and cancer: an interface between the environment and the genome. Epigenetics 2011;6:804–19. Liu L, Rando TA. Manifestations and mechanisms of stem cell aging. J Cell Biol 2011;193:257–66. Hutt KJ, Albertini DF. An oocentric view of folliculogenesis and embryogenesis. Reprod Biomed Online 2007;14:758–64. Carrell DT, Hammoud SS. The human sperm epigenome and its potential role in embryonic development. Mol Hum Reprod 2010;16:37–47. Garrido N, Remohi J, Martinez-Conejero JA, Garcia-Herrero S, Pellicer A, Meseguer M. Contribution of sperm molecular features to embryo quality and assisted reproduction success. Reprod Biomed Online 2008;17:855–65. Knez K, Zorn B, Tomazevic T, Vrtacnik-Bokal E, Virant-Klun I. The IMSI procedure improves poor embryo development in the same infertile couples with poor semen quality: a comparative prospective randomized study. Reprod Biol Endocrinol 2011;9:123. Hamatani T. Human spermatozoal RNAs. Fertil Steril 2012;97:275–81. Yanagimachi R. Male gamete contributions to the embryo. Ann N Y Acad Sci 2005;1061:203–7. Oliva R. Protamines and male infertility. Hum Reprod Update 2006;12:417–35. van Roijen HJ, Ooms MP, Spaargaren MC, Baarends WM, Weber RF, Grootegoed JA, et al. Immunoexpression of testis-specific histone 2b in human spermatozoa and testis tissue. Hum Reprod 1998;13:1559–66. Churikov D, Siino J, Svetlova M, Zhang K, Gineitis A, Morton Bradbury E, et al. Novel human testis-specific histone H2b encoded by the interrupted gene on the X chromosome. Genomics 2004;84:745–56. Rousseaux S, Gaucher J, Thevenon J, Caron C, Vitte AL, Curtet S, et al. [Spermiogenesis: histone acetylation triggers male genome reprogramming]. Gynecol Obstet Fertil 2009;37:519–22. Nair M, Nagamori I, Sun P, Mishra DP, Rheaume C, Li B, et al. Nuclear regulator Pygo2 controls spermiogenesis and histone H3 acetylation. Dev Biol 2008;320:446–55. Rousseaux S, Boussouar F, Gaucher J, Reynoird N, Montellier E, Curtet S, et al. Molecular models for post-meiotic male genome reprogramming. Syst Biol Reprod Med 2011;57:50–3. Song N, Liu J, An S, Nishino T, Hishikawa Y, Koji T. Immunohistochemical analysis of histone H3 modifications in germ cells during mouse spermatogenesis. Acta Histochem Cytochem 2011;44:183–90. Govin J, Lestrat C, Caron C, Pivot-Pajot C, Rousseaux S, Khochbin S. Histone acetylation-mediated chromatin compaction during mouse spermatogenesis. Ernst Schering Res Found Workshop 2006:155–72. Steilmann C, Cavalcanti MC, Bartkuhn M, Pons-Kuhnemann J, Schuppe HC, Weidner W, et al. The interaction of modified histones with the bromodomain testis-specific (BRDT) gene and its mRNA level in sperm of fertile donors and subfertile men. Reproduction 2010;140:435–43. Meistrich ML, Mohapatra B, Shirley CR, Zhao M. Roles of transition nuclear proteins in spermiogenesis. Chromosoma 2003;111:483–8. Shirley CR, Hayashi S, Mounsey S, Yanagimachi R, Meistrich ML. Abnormalities and reduced reproductive potential of sperm from Tnp1- and Tnp2-null double mutant mice. Biol Reprod 2004;71:1220–9. Suganuma R, Yanagimachi R, Meistrich ML. Decline in fertility of mouse sperm with abnormal chromatin during epididymal passage as revealed by ICSI. Hum Reprod 2005;20:3101–8. Corzett M, Mazrimas J, Balhorn R. Protamine 1: protamine 2 stoichiometry in the sperm of eutherian mammals. Mol Reprod Dev 2002;61:519–27. Carrell DT, Emery BR, Hammoud S. Altered protamine expression and diminished spermatogenesis: what is the link? Hum Reprod Update 2007;13: 313–27. Aoki VW, Carrell DT. Human protamines and the developing spermatid: their structure, function, expression and relationship with male infertility. Asian J Androl 2003;5:315–24. de Mateo S, Ramos L, de Boer P, Meistrich M, Oliva R. Protamine 2 precursors and processing. Protein Pept Lett 2011;18:778–85. Carrell DT, Liu L. Altered protamine 2 expression is uncommon in donors of known fertility, but common among men with poor fertilizing capacity, and VOL. 97 NO. 2 / FEBRUARY 2012 30. 31. 32. 33. 34. 35. 36. 37. 38. 39. 40. 41. 42. 43. 44. 45. 46. 47. 48. 49. 50. 51. may reflect other abnormalities of spermiogenesis. J Androl 2001;22: 604–10. Aoki VW, Liu L, Jones KP, Hatasaka HH, Gibson M, Peterson CM, et al. Sperm protamine 1/protamine 2 ratios are related to in vitro fertilization pregnancy rates and predictive of fertilization ability. Fertil Steril 2006;86: 1408–15. Torregrosa N, Dominguez-Fandos D, Camejo MI, Shirley CR, Meistrich ML, Ballesca JL, et al. Protamine 2 precursors, protamine 1/protamine 2 ratio, DNA integrity and other sperm parameters in infertile patients. Hum Reprod 2006;21:2084–9. de Mateo S, Gazquez C, Guimera M, Balasch J, Meistrich ML, Ballesca JL, et al. Protamine 2 precursors (pre-P2), protamine 1 to protamine 2 ratio (P1/P2), and assisted reproduction outcome. Fertil Steril 2009;91: 715–22. Simon L, Castillo J, Oliva R, Lewis SE. Relationships between human sperm protamines, DNA damage and assisted reproduction outcomes. Reprod Biomed Online 2011;23:724–34. Huser T, Orme CA, Hollars CW, Corzett MH, Balhorn R. Raman Spectroscopy of DNA packaging in individual human sperm cells distinguishes normal from abnormal cells. J Biophotonics 2009;2:322–32. Aoki VW, Emery BR, Liu L, Carrell DT. Protamine levels vary between individual sperm cells of infertile human males and correlate with viability and DNA integrity. J Androl 2006;27:890–8. Hammoud S, Liu L, Carrell DT. Protamine ratio and the level of histone retention in sperm selected from a density gradient preparation. Andrologia 2009;41:88–94. Cree LH, Balhorn R, Brewer LR. Single molecule studies of DNA-protamine interactions. Protein Pept Lett 2011;18:802–10. Balhorn R. A model for the structure of chromatin in mammalian sperm. J Cell Biol 1982;93:298–305. Hammoud SS, Nix DA, Zhang H, Purwar J, Carrell DT, Cairns BR. Distinctive chromatin in human sperm packages genes for embryo development. Nature 2009;460:473–8. Hammoud SS, Nix DA, Hammoud AO, Gibson M, Cairns BR, Carrell DT. Genome-wide analysis identifies changes in histone retention and epigenetic modifications at developmental and imprinted gene loci in the sperm of infertile men. Hum Reprod 2011;26:2558–69. Ward WS. Function of sperm chromatin structural elements in fertilization and development. Mol Hum Reprod 2010;16:30–6. Yamauchi Y, Shaman JA, Ward WS. Non-genetic contributions of the sperm nucleus to embryonic development. Asian J Androl 2011;13:31–5. Dominguez K, Arca CDR, Ward WS. The relationship between chromatin structure and DNA damage in mammalian spermatozoa. In: Zini A, Agarwal A, editors. Sperm chromatin: biological and clinical applications in male infertility and assisted reproduction. New York: Springer; 2011. Garcia-Peiro A, Martinez-Heredia J, Oliver-Bonet M, Abad C, Amengual MJ, Navarro J, et al. Protamine 1 to protamine 2 ratio correlates with dynamic aspects of DNA fragmentation in human sperm. Fertil Steril 2011;95:105–9. Aoki VW, Moskovtsev SI, Willis J, Liu L, Mullen JB, Carrell DT. DNA integrity is compromised in protamine-deficient human sperm. J Androl 2005;26: 741–8. Carrell DT, Emery BR, Hammoud S. The aetiology of sperm protamine abnormalities and their potential impact on the sperm epigenome. Int J Androl 2008;31:537–45. Nanassy L, Liu L, Griffin J, Carrell DT. The clinical utility of the protamine 1/protamine 2 ratio in sperm. Protein Pept Lett 2011;18:772–7. Foresta C, Zorzi M, Rossato M, Varotto A. Sperm nuclear instability and staining with aniline blue: abnormal persistence of histones in spermatozoa in infertile men. Int J Androl 1992;15:330–7. Khara KK, Vlad M, Griffiths M, Kennedy CR. Human protamines and male infertility. J Assist Reprod Genet 1997;14:282–90. Soteriadou KP, Remoundos MS, Katsikas MC, Tzinia AK, Tsikaris V, Sakarellos C, et al. The Ser-Arg-Tyr-Asp region of the major surface glycoprotein of Leishmania mimics the Arg-Gly-Asp-Ser cell attachment region of fibronectin. J Biol Chem 1992;267:13980–5. Haidl G, Schill WB. Assessment of sperm chromatin condensation: an important test for prediction of IVF outcome. Arch Androl 1994;32:263–6. 273 VIEWS AND REVIEWS 52. 53. 54. 55. 56. 57. 58. 59. 60. 61. 62. 63. 64. 65. 66. 67. 68. 69. 70. 71. 72. 274 Li Y, Lalancette C, Miller D, Krawetz SA. Characterization of nucleohistone and nucleoprotamine components in the mature human sperm nucleus. Asian J Androl 2008;10:535–41. Miller D, Brinkworth M, Iles D. Paternal DNA packaging in spermatozoa: more than the sum of its parts? DNA, histones, protamines and epigenetics. Reproduction 2010;139:287–301. Campos EI, Reinberg D. Histones: annotating chromatin. Annu Rev Genet 2009;43:559–99. Cairns BR. The logic of chromatin architecture and remodelling at promoters. Nature 2009;461:193–8. Kouzarides T. Chromatin modifications and their function. Cell 2007;128: 693–705. Handy DE, Castro R, Loscalzo J. Epigenetic modifications: basic mechanisms and role in cardiovascular disease. Circulation 2011;123:2145–56. Liu Y, Lu C, Yang Y, Fan Y, Yang R, Liu CF, et al. Influence of histone tails and H4 tail acetylations on nucleosome-nucleosome interactions. J Mol Biol 2011;14:749–64. Peng L, Seto E. Deacetylation of nonhistone proteins by HDACs and the implications in cancer. Handb Exp Pharmacol 2011;206:39–56. Werner M, Ruthenburg AJ. The united states of histone ubiquitylation and methylation. Mol Cell 2011;43:5–7. Arpanahi A, Brinkworth M, Iles D, Krawetz SA, Paradowska A, Platts AE, et al. Endonuclease-sensitive regions of human spermatozoal chromatin are highly enriched in promoter and CTCF binding sequences. Genome Res 2009;19:1338–49. Jones EL, Zalensky AO, Zalenskaya IA. Protamine withdrawal from human sperm nuclei following heterologous ICSI into hamster oocytes. Protein Pept Lett 2011;18:811–6. Gan Q, Yoshida T, McDonald OG, Owens GK. Concise review: epigenetic mechanisms contribute to pluripotency and cell lineage determination of embryonic stem cells. Stem Cells 2007;25:2–9. Rangasamy D, Berven L, Ridgway P, Tremethick DJ. Pericentric heterochromatin becomes enriched with H2a.Z during early mammalian development. EMBO J 2003;22:1599–607. Wu SF, Zhang H, Cairns BR. Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm. Genome Res 2011;21: 578–89. Carrell DT. Epigenetic marks in zebrafish sperm: insights into chromatin compaction, maintenance of pluripotency, and the role of the paternal genome after fertilization. Asian J Androl 2011;13:620–1. Ng HH, Bird A. DNA methylation and chromatin modification. Curr Opin Genet Dev 1999;9:158–63. Bronner C, Chataigneau T, Schini-Kerth VB, Landry Y. The ‘‘epigenetic code replication machinery,’’ ECREM: a promising drugable target of the epigenetic cell memory. Curr Med Chem 2007;14:2629–41. Portela A, Esteller M. Epigenetic modifications and human disease. Nat Biotechnol 2010;28:1057–68. Deaton AM, Bird A. CPG islands and the regulation of transcription. Genes Dev 2011;25:1010–22. Thomson JP, Skene PJ, Selfridge J, Clouaire T, Guy J, Webb S, et al. CPG islands influence chromatin structure via the CPG-binding protein CFP1. Nature 2010;464:1082–6. Illingworth RS, Bird AP. CPG islands—‘‘a rough guide’’. FEBS Lett 2009;583: 1713–20. 73. 74. 75. 76. 77. 78. 79. 80. 81. 82. 83. 84. 85. 86. 87. 88. 89. 90. 91. Lienert F, Wirbelauer C, Som I, Dean A, Mohn F, Schubeler D. Identification of genetic elements that autonomously determine DNA methylation states. Nat Genet 2011;43:1091–7. Smallwood SA, Tomizawa S, Krueger F, Ruf N, Carli N, Segonds-Pichon A, et al. Dynamic CPG island methylation landscape in oocytes and preimplantation embryos. Nat Genet 2011;43:811–4. Smallwood SA, Kelsey G. De novo DNA methylation: a germ cell perspective. Trends Genet 2011. Reik W, Dean W, Walter J. Epigenetic reprogramming in mammalian development. Science 2001;293:1089–93. Molaro A, Hodges E, Fang F, Song Q, McCombie WR, Hannon GJ, et al. Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates. Cell 2011;146:1029–41. Fisher CL, Fisher AG. Chromatin states in pluripotent, differentiated, and reprogrammed cells. Curr Opin Genet Dev 2011;21:140–6. Odom LN, Segars J. Imprinting disorders and assisted reproductive technology. Curr Opin Endocrinol Diabetes Obes 2010;17:517–22. Owen CM, Segars JH Jr. Imprinting disorders and assisted reproductive technology. Semin Reprod Med 2009;27:417–28. Rajender S, Avery K, Agarwal A. Epigenetics, spermatogenesis and male infertility. Mutat Res 2011;727:62–71. Marques CJ, Costa P, Vaz B, Carvalho F, Fernandes S, Barros A, et al. Abnormal methylation of imprinted genes in human sperm is associated with oligozoospermia. Mol Hum Reprod 2008;14:67–74. Kobayashi H, Sato A, Otsu E, Hiura H, Tomatsu C, Utsunomiya T, et al. Aberrant DNA methylation of imprinted loci in sperm from oligospermic patients. Hum Mol Genet 2007;16:2542–51. Minor A, Chow V, Ma S. Aberrant DNA methylation at imprinted genes in testicular sperm retrieved from men with obstructive azoospermia and undergoing vasectomy reversal. Reproduction 2011;141:749–57. Poplinski A, Tuttelmann F, Kanber D, Horsthemke B, Gromoll J. Idiopathic male infertility is strongly associated with aberrant methylation of MEST and IGF2/H19 ICR1. Int J Androl 2010;33:642–9. Hammoud SS, Purwar J, Pflueger C, Cairns BR, Carrell DT. Alterations in sperm DNA methylation patterns at imprinted loci in two classes of infertility. Fertil Steril 2010;94:1728–33. Nanassy L, Carrell DT. Analysis of the methylation pattern of six gene promoters in sperm of men with abnormal protamination. Asian J Androl 2011;13:342–6. Nanassy L, Carrell DT. Abnormal methylation of the promoter of CREM is broadly associated with male factor infertility and poor sperm quality but is improved in sperm selected by density gradient centrifugation. Fertil Steril 2011;95:2310–4. Aston KI, Punj V, Liu L, Carrell DT. Genome-wide sperm deoxyribonucleic acid methylation is altered in some men with abnormal chromatin packaging or poor in vitro fertilization embryogenesis. Fertil Steril 2012;97: 285–92. Bogdanovic O, Long SW, van Heeringen SJ, Brinkman AB, Gomez-Skarmeta JL, Stunnenberg HG, et al. Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis. Genome Res 2011;21:1313–27. Furrow RE, Christiansen FB, Feldman MW. Environment-sensitive epigenetics and the heritability of complex diseases. Genetics 2011;189: 1377–87. VOL. 97 NO. 2 / FEBRUARY 2012
© Copyright 2026 Paperzz