Functional Ecology 2014, 28, 108–123 doi: 10.1111/1365-2435.12150 Leaf form and photosynthetic physiology of Dryopteris species distributed along light gradients in eastern North America Emily B. Sessa*,† and Thomas J. Givnish Department of Botany, University of Wisconsin-Madison, 430 Lincoln Drive, Madison, WI 53706 USA Summary 1. Despite the ubiquity of ferns and at least tacit recognition by botanists that their physiology is unique among land plants, most studies on fern physiology have focused on only a few, locally distributed, usually distantly related species. No previous study has attempted to examine physiological adaptations in a group of widespread taxa that are closely related and whose relationships are well understood. Here we report leaf form and physiological measures for such a group, the 11 eastern North American species of Dryopteris (Dryopteridaceae), and examine differences in these parameters for evidence of adaptation to light availability. 2. Economic theory predicts that species from sunnier habitats should have narrower, more steeply inclined leaves, lower specific leaf area, higher stomatal density, higher rates of maximum photosynthesis, respiration and stomatal conductance, and require more light to saturate photosynthesis. Species should show adaptive crossover in net carbon uptake per unit leaf mass, with a relative advantage by sun-associated species at high photon flux densities (PFDs) and by shade-associated species at low PFDs. 3. Field studies allow us to begin characterizing the range of native light environments occupied by members of this group, and to examine interspecific variation in several aspects of leaf form and photosynthetic light response for evidence of adaption to light availability. We also present a novel means for incorporating phylogeny in tests of correlated evolution in a reticulate lineage. 4. Synthesis. Observed trends in physiology and morphology generally agree with qualitative predictions but are often not statistically significant. We found no support for adaptive crossover in mass-based carbon uptake, and thus for light availability being the most important variable driving morphological and physiological adaptation in these ferns. We propose that hydraulic factors related to water balance may have played a larger role in determining their morphological and physiological variation. Allopolyploid hybrids did not show transgression in any physiological parameter that may have allowed them to coexist regionally with their parents. The results of our phylogenetically structured analyses highlight the importance of incorporating phylogeny into comparative studies, particularly when hybrid or polyploid taxa are present. Key-words: comparative methods, ferns, gas exchange, hydraulics, light regimes, photosynthetic light response, polyploidy, transgressive trait expression Introduction Ferns bridge a critical functional gap in land plant evolution between nonvascular bryophytes and seed-bearing *Correspondence author. E-mail emilysessa@ufl.edu † Present address. Department of Biology, University of Florida, Gainesville, FL 32611, USA. vascular plants. They are second only to angiosperms in species diversity among land plants (Smith et al. 2006) and inhabit a large range of climates, substrates and light regimes, both in habitats where flowering plants dominate and where few angiosperms can survive (Page 2002). Despite their broad ecological success and key position in land plant evolution, relatively little is known about the physiological traits that have driven fern diversification or © 2013 The Authors. Functional Ecology © 2013 British Ecological Society Leaf form and photosynthesis in Dryopteris 109 allowed them to persist despite limiting constraints of their biology. Ferns are characterized ecologically by an independent, ephemeral gametophyte stage (Watkins, Mack & Mulkey 2007), low rates of photosynthesis, vascular tissue development and leaf hydraulic conductance (Brodribb & Holbrook 2004; Brodribb, Feild & Jordan 2007; Boyce et al. 2009; Watkins, Holbrook & Zwieniecki 2010), relatively high photosynthetic capacity in low light (Page 2002), slow plant growth rates (Page 2002) and low stomatal densities (Franks & Farquhar 2006; Kessler et al. 2007). Biologists have traditionally viewed ferns as once-dominant organisms of ancient ecosystems that were quickly out-competed and relegated to the shadows following the evolution of seed plants in the Devonian, and especially after the rise of flowering plants in the Cretaceous (Niklas, Tiffney & Knoll 1983; Lupia, Lidgard & Crane 1999; Nagalingum et al. 2002). Recent research has challenged this view (Rothwell 1996), and studies based on fossil and molecular dating evidence have demonstrated that ferns underwent their major radiation into modern lineages only after the appearance of the angiosperms in the Cretaceous (Schneider et al. 2004; Schuettpelz & Pryer 2009). Recent research has identified several physiological features of ferns that may have contributed to their success in various terrestrial ecosystems, including cavitation-resistant, tracheid-based xylem (Watkins, Holbrook & Zwieniecki 2010; Pittermann et al. 2011), a host of adaptations to xeric habitats (Hietz 2010), and chimeric photoreceptors that enhance plastid movement in response to light at low fluences (Kawai et al. 2003; Suetsugu et al. 2005; Kanegae et al. 2006). Chimeric photoreceptors combine phytochrome and phototropin functionality to allow red light, which is typically enriched relative to blue light in forest understoreys (Endler 1993), to trigger phototrophic responses and chloroplast relocation, which are typically initiated only by blue or UV light. Arens (1997) found that several leaf characters in tree ferns are strongly correlated with light environment; together these data suggest that traits related to light response may have played an important role in shaping fern evolution. However, no study has yet attempted to test the extent to which adaptation to different light environments may drive the evolution of morphological and physiological characters within a fern lineage, or to trace the evolution of such traits in a phylogenetic framework. A high sensitivity of plastid movement to light, for example, opens the possibility that tight correlations among the photosynthetic parameters Amax, R and k (maximum photosynthetic rate, dark respiration rate and the amount of light required to half-saturate photosynthesis, respectively) seen in many angiosperms (e.g. see Bj€ orkman 1981; Givnish 1988; Walters & Reich 1996; Givnish, Montgomery & Goldstein 2004; Chen et al. 2011) might break down in ferns, with plastid motion affecting Amax strongly and k and R more weakly, if at all. Alternatively, the low leaf hydraulic conductance of ferns may make differential modulation of hydraulic traits a greater constraint on survival and competitive success under different light regimes than variation in photosynthetic parameters. A comparative study of the evolution of photosynthetic parameters among related fern species native to different light regimes should thus be illuminating, regardless of whether the traditional patterns seen in flowering plants are observed in ferns or not. A better understanding of traits that drive adaptation to different environments and lead to niche differentiation may also allow us to evaluate possible mechanisms for the persistence of hybrid and polyploid taxa, which are extremely common in ferns (Manton 1950; Wood et al. 2009). Newly formed polyploids are subject to minority cytotype exclusion, in which polyploid cytotypes experience a frequency-dependent mating disadvantage and waste reproductive effort in ineffective matings with the established parental cytotype (Levin 1975). Niche differentiation between progenitors and offspring has been suggested as a potential mechanism allowing polyploids to persist regionally with their parental species on evolutionary time-scales (Rodriguez 1996). In particular, ploidy increases are likely to increase cell volume (Melaragno, Mehrota & Coleman 1993; Comai 2005), potentially increasing values for traits such as specific leaf area (SLA, cm2 g1), as well as tracheid diameters and thus hydraulic conductance. Such increases may have important implications for light capture and water loss, potentially making hybrids less susceptible to internal self-shading and drought. The 11 eastern North American members of the woodfern genus, Dryopteris, are an ideal group for addressing these questions. These species vary extensively in leaf morphology and habitat, from species found only on brightly lit, well-drained cliff faces and possessing narrow, short, erect fronds (e.g. D. fragrans), to species of heavily shaded, mesic forest understoreys that often have relatively broad, tall, sprawling fronds (e.g. D. goldiana; Fig. 1). Some of these species also occur in Europe and Asia, but eight are endemic to eastern North America. Sessa, Zimmer & Givnish (2012a) recently demonstrated that the 11 North American species are not each others’ closest relatives, and that each of the six diploids in the group is more closely related to Asian or European species than to other North American diploid taxa. The remaining five eastern North American species are allopolyploids, formed over the last 13 million years via hybridization and genome doubling involving three of the extant North American diploids and one extinct progenitor (Sessa, Zimmer & Givnish 2012b; Table 1). Tani & Kudo (2003, 2005), and Tessier & Bornn (2007) have examined biomass allocation and the contributions of overwintering leaves to carbon uptake in several Dryopteris species, and R€ unk, Zobel & Zobel (2010) and R€ unk & Zobel (2007) have compared growth and survival of a few European species as a function of edaphic conditions and light availability, but no rigorous study of photosynthetic adaptations to light regime has been undertaken for the North American group, despite their strikingly different habitats and leaf morphologies. © 2013 The Authors. Functional Ecology © 2013 British Ecological Society, Functional Ecology, 28, 108–123 110 E. B. Sessa & T. J. Givnish (a) (b) (c) (d) (e) (f) (g) (h) (i) (j) (k) Fig. 1. Eleven species of eastern North American Dryopteris included in the current study. (a) D. campyloptera, (b) D. carthusiana, (c) D. celsa, (d) D. clintoniana, (e) D. cristata, (f) D. expansa, (g) D. fragrans, (h) D. goldiana, (i) D. intermedia, (j) D. ludoviciana, (k) D. marginalis. Table 1. North American allopolyploid Dryopteris species and their putative progenitors, with ploidy indicated. The ploidy of the extinct progenitor “D. semicristata” is unknown, but it is hypothesized to have been diploid (Montgomery & Wagner 1993) Allopolyploid Putative parents D. campyloptera (49) D. carthusiana (49) D. expansa (29), D. intermedia (29) D. intermedia (29), “D. semicristata” (29) D. goldiana (29), D. ludoviciana (29) D. cristata (49), D. goldiana (29) D. ludoviciana (29), “D. semicristata” (29) D. celsa (49) D. clintoniana (69) D. cristata (49) In this paper, we present gas exchange data from field studies and tests for correlated evolution of several morphological and physiological traits with light regime, which we predict based on the following three hypotheses: 1. Species from brighter environments should have narrower, more steeply inclined leaves, lower SLA (cm2 g1) and higher maximum photosynthetic rates (Amax, lmol CO2 m2 per s), light compensation points [the instantaneous light compensation point, ICP and the leaf compensation point, LCP, the latter incorporating night-time respiration and leaf construction costs, both measured in photon flux density (PFD, lmol photons m2 per s)], dark respiration rates (R, lmol © 2013 The Authors. Functional Ecology © 2013 British Ecological Society, Functional Ecology, 28, 108–123 Leaf form and photosynthesis in Dryopteris 111 CO2 m2 per s), maximum stomatal conductances (gs, mol H2O m2 per s) and stomatal densities (per mm2) compared to species from shadier environments (Bj€ orkman, Ludlow & Morrow 1972; Bj€ orkman 1981; Givnish 1988; Givnish, Montgomery & Goldstein 2004); 2. Species should show adaptive crossover in net carbon uptake per unit leaf mass as a function of PFD, with sun-associated species outperforming others at high PFDs and shade-associated species outperforming others at lower PFDs (Bj€ orkman, Ludlow & Morrow 1972; Givnish 1988, 1995; Givnish, Montgomery & Goldstein 2004); and 3. Allopolyploid species should exhibit physiological, morphological or ecological traits that fall outside the range of variation exhibited by their parental taxa [i.e. they should be transgressive relative to their progenitors (Rieseberg, Archer & Wayne 1999)], and doing so may enable them to coexist regionally with those progenitors in the long term. The rationale for these predictions is as follows: in brightly lit sites with high heat loads and/or vapour pressure deficits, plants must balance increased rates of photosynthetic carbon gain due to increased light and temperature with greater water loss and low leaf water potentials, which can lead to desiccation. Narrower leaves are expected in such environments in order to maintain high rates of photosynthesis while reducing water loss and high leaf temperatures (Givnish & Vermeij 1976; Givnish 1979), as are more steeply inclined leaves, which reduce heat load and transpiration by decreasing the angle of incident radiation on the leaf (Givnish 1979). For deeply divided foliage, however, such as most Dryopteris share, the main effect of shorter, narrower fronds may be to reduce the drop in local leaf water potential across the length and breadth of the frond, favouring narrow, short fronds in sunny microsites with high evaporative loads, and broader, taller fronds in shadier microsites. Greater stature should also increase competitive ability, especially in sites with dense coverage by competitors (Givnish 1982, 1995). SLA is a measure of leaf area per unit dry mass; thicker leaves or leaves with denser tissue have more dry biomass per unit area and thus lower levels of SLA (Evans & Poorter 2001; Wright et al. 2004; Shipley et al. 2005). SLA is positively correlated with high photosynthetic rates per unit leaf mass and high rates of whole-plant growth (Shipley 1995; Kruger & Volin 2006; Shipley et al. 2006) and is expected to decline with increasing light and decreasing moisture availability (Givnish 1978, 1988; Ackerly et al. 2002). According to classical economic theory (Bj€ orkman 1981; Givnish 1988), maximum photosynthetic rates (Amax) are expected to be higher in species from brighter environments, as are dark respiration rates (R), the amount of light required to half-saturate photosynthesis (k) and the amount of light needed to balance leaf respiration on an instantaneous basis (ICP, instantaneous light compensation point; Givnish, Montgomery & Goldstein 2004). In C3 plants, stomatal conductance (gs) – determined by stomatal size, depth and density per unit area (Franks & Beerling 2009b; Franks, Drake & Beerling 2009; Taylor et al. 2012) – is expected to be greater in brighter, moister and/or more fertile microsites (Givnish & Vermeij 1976; Cowan & Farquhar 1977; Wong, Cowan & Farquhar 1979; Farquhar & Sharkey 1982; Givnish 1986; Franks & Beerling 2009a; Taylor et al. 2012) in order to maximize photosynthetic rate at a given rate or cost of water loss, and lower in drier microsites in order to protect the hydraulic pathway leading from the roots to the leaves from cavitation (Brodribb & Holbrook 2004, 2006). Across C3 plants, stomatal density and individual size are negatively correlated, and high stomatal conductance is positively correlated with stomatal density and photosynthetic capacity (Franks & Beerling 2009a,b; Franks, Drake & Beerling 2009; Taylor et al. 2012). In general, we might expect photosynthesis per unit leaf mass to be higher in species native to sunnier microsites in comparisons made at higher PFDs, and higher in species from shadier microsites in comparisons made at lower PFDs (Bj€ orkman, Ludlow & Morrow 1972; Givnish 1988, 1995; Givnish, Montgomery & Goldstein 2004). For hybrid allopolyploid taxa, it is possible that the expression of certain morphological, physiological or ecological traits extends significantly beyond that seen in one or both parents. Successful polyploids are often those that inhabit an ecological niche different from either parent (Schwarzbach, Donovan & Rieseberg 2001; Maherali, Walden & Husband 2009), or that display phenotypic traits which are outside the range exhibited by the parents [i.e. transgressive character expression (Rieseberg et al. 2003)], especially if their distributions overlap. The conspicuous success of allopolyploid taxa in the Dryopteris complex, several of which occupy ranges that are transgressive relative to one or both parents (Sessa, Zimmer & Givnish 2012b), may be due to such transgressive expression, which would have allowed them to avoid minority cytotype exclusion following polyploidization (Abbott & Lowe 2004; Quintanilla & Escudero 2006; Jimenez et al. 2009). Here we present data on native light regime, leaf form and photosynthetic light response from field studies of 11 Dryopteris species in eastern North America. These data allow us to test the hypotheses described above, in order to determine whether leaf traits and photosynthetic parameters show the expected patterns of correlated evolution with photosynthetic light availability in these species’ native habitats. Materials and methods SPECIES, STUDY SITES AND LIGHT REGIMES For 10 species of eastern North American Dryopteris – D. campyloptera*, D. carthusiana*, D. celsa*, D. clintoniana*, D. cristata*, D. expansa, D. fragrans, D. goldiana, D. ludoviciana, and D. marginalis – we located one field population and measured 5–10 plants © 2013 The Authors. Functional Ecology © 2013 British Ecological Society, Functional Ecology, 28, 108–123 112 E. B. Sessa & T. J. Givnish Table 2. Locations of field populations of Dryopteris measured in this study Species Location of study site GPS coordinates D. D. D. D. D. D. D. D. D. D. D. Bear Pen Gap, Blue Ridge Parkway, North Carolina Huron Mountains, Big Bay, Michigan Private property, Hertford, North Carolina Thurber Preserve, Dryden, New York Huron Mountains, Big Bay, Michigan Chequamegon-Nicolet National Forest, Wisconsin Huron Mountains, Big Bay, Michigan Fernwood Gardens, Niles, Michigan Huron Mountains, Big Bay, Michigan Rocky Hock Swamp Preserve, Hertford, North Carolina Private property, Madison, New York 35°19′16″N, 82°53′25″W 46°53′22″N, 87°53′56″W 36°13′46″N, 76°33′53″W 42°33′17″N, 76°″W 46°53′22″N, 87°53′56″W 46°17′46″N, 90°49′40″W 46°53′08″N, 87°54′22″W 41°51′55″N, 86°20′52″W 46°53′22″N, 87°53′56″W 36°11′19″N, 76°40′37″W 42°52′07″N, 75°30′57″W campyloptera carthusiana celsa clintoniana cristata expansa fragrans goldiana intermedia ludoviciana marginalis in each population (Table 2). For an eleventh species, D. intermedia, we made measurements on 10 individuals at two separate populations in the Huron Mountains in Michigan. Allotetraploid species are indicated by asterisks. Parental taxa are listed in Table 1. We assessed light regimes in the field using digital hemispheric photographs taken with a Nikon Coolpix 5400 digital camera (Melville, NY, USA) with a fisheye lens attachment. Photographs were taken immediately above each plant and were analysed using Gap Light Analyzer (Frazer et al. 1999) to estimate the percentage of total (direct plus indirect) light transmittance through the canopy. GAS EXCHANGE MEASUREMENTS We measured photosynthetic light response on attached, fully expanded leaves using an LI-6400 portable photosynthesis system (Li-Cor, Lincoln, NE, USA) equipped with a red/blue LED light source and a CO2 mixing system. All measurements were made under ambient relative humidity (c. 55–65%), leaf temperature (c. 20–26 °C) and CO2 (400 lmol per mol) between 07.00 and 13.00 h. Leaves were clamped into the measurement cuvette and allowed to equilibrate at a moderate light intensity (200 lmol m2 per s). We then measured photosynthesis at the following PFD values: 450, 750, 1000, 500, 260, 150, 90, 60, 40, 20, 10 and 0 lmol m2 per s and fit these data to the Michaelis–Menten eqn (1) following Givnish, Montgomery & Goldstein (2004). AðPFDÞ ¼ Amax PFD=ðk þ PFDÞ R MORPHOLOGICAL AND FUNCTIONAL TRAIT MEASUREMENTS We measured the length and width at the widest section of each fully expanded, mature leaf and analysed these as the ratio frond narrowness (length/width), with larger values describing relatively longer, narrower fronds. We used a clinometer (Suunto, Vantaa, Finland) to measure the angle of inclination away from vertical of each leaf tip, with vertical = 0° and horizontal = 90°. Values >90° describe leaves whose tips drooped below horizontal. The total width and height of each plant were also measured and analysed as the ratio plant narrowness, similar to frond narrowness, which effectively integrates frond angles and lengths over a whole plant. Individuals with higher plant narrowness values tend to be taller than wide and have leaves held at steeper angles on average, while plants with lower values tend to be broader than tall and have leaves that lie at an angle approaching parallel with the ground. We used negative epidermal impressions taken from one pinna (leaf division) per plant with clear nail polish to calculate stomatal densities. The numbers of stomata per mm2 were counted at five locations on each epidermal impression and averaged. We measured SLA (cm2 g1) by removing and photographing against a cm scale a single pinna from each plant. Pinnae were then dried in silica gel and weighed using a Sartorius electronic balance (precision = 000001 g, Goettingen, Germany). Areas of pinnae were calculated from photographs using IMAGEJ software (Abramoff, Magelaes & Ram 2004). Data are archived in DRYAD (doi: 10.5061/dryad.38h06). eqn 1 where Amax – R is the asymptotic maximum rate of net photosynthesis per unit leaf area, R is the rate of dark respiration, k is the amount of light required to half-saturate photosynthesis, and all parameters have units of lmol m2 per s. Amax, R and k were fit to the light response data using a three-parameter Newton–Raphson approach (Givnish, Montgomery & Goldstein 2004). R values were normalized to 25 °C using a standard Q10 value of 2. We calculated the ICP (lmol PAR m2 per s) by setting A(PFD) = 0 and solving for PFD in eqn (1). Leaf compensation points (LCPs, lmol PAR m2 per s) were calculated using the same equation, following (Givnish, Montgomery & Goldstein 2004) to adjust the value of R to account for night-time leaf respiration and leaf construction costs. We obtained mass-based values of Amax (Amax, 2 per s) and R (Rmass nmol CO2 g2 per s) by mass, nmol CO2 g multiplying the area-based photosynthetic values by SLA (cm2 g1). We also recorded maximum stomatal conductance (gs, mol H2O m2 per s) for each individual. Data are archived in DRYAD (doi: 10.5061/dryad.38h06). STATISTICAL ANALYSES We performed all statistical analyses in R (R Development Core Team 2008). We first conducted standard linear regressions for the means of each morphological and physiological trait per species as a function of per cent canopy openness, and for all traits against each other; significance at P = 005, 001 and 0001 indicated by *, **, and ***. Data for the two populations of D. intermedia were not statistically significantly different and so were combined prior to regression analyses, as were data for the dimorphic sterile and fertile leaves of D. cristata. When making interspecies comparisons, phylogenetic nonindependence can lead to an overestimation of degrees of freedom in statistical analyses when species are treated incorrectly as fully independent units (Felsenstein 1985). We therefore employed the phylogenetically independent contrast (PIC) method (Felsenstein 1985) to determine whether correlations remained significant when phylogeny was taken into account. The PIC method incorporates branch lengths from a phylogenetic tree to account for relation- © 2013 The Authors. Functional Ecology © 2013 British Ecological Society, Functional Ecology, 28, 108–123 Leaf form and photosynthesis in Dryopteris 113 ships, which we derived from the multilabelled phylogeny produced by Sessa, Zimmer & Givnish (2012b) based on the biparentally inherited nuclear marker gapCp (Fig. 2). In order to standardize branch lengths, we added a small value (00001) to edges with negligible (≤000000001) branch lengths, so that unequal weight would not be given to contrasts involving shorter branches (Garland, Harvey & Ives 1992). Tetraploid and hexaploid taxa possess two and three copies, respectively, of nuclear loci due to whole-genome duplication and are thus represented by multiple tips on the gapCp tree. If left uncorrected, this multilabelled nature would lead to each tetraploid taxon being interpreted as two separate species and each hexaploid as three separate species during calculation of contrasts. To avoid this, we used a novel repetitive process to perform contrast analyses, considering each possible combination of polyploid positions on the tree. In the first step, tips were dropped from the tree at random such that polyploids were represented by only one tip each (Fig. 3). Contrasts were then calculated for per cent canopy openness and each of the dependent trait variables using this random tree, and a standard linear regression carried out on the contrasts and forced through the origin (Garland, Harvey & Ives 1992). P-values were stored at each step and the process repeated 10 000 times to ensure that all possible binary tree topologies (48) were sampled in the contrast analyses. We produced histograms of P-values for contrasts of each trait against contrasts of per cent canopy openness in order to assess the frequency of regression analyses that produced significant vs. nonsignificant results. Values of the correlation coefficient (r) for each of the 10 000 repetitions were also recorded, in order to determine the percentage of correlations for each set of contrasts that were positive or negative. Finally, we performed a one-tailed t-test to determine whether SLA differed significantly between polyploid and diploid species. Results In the field, Dryopteris occupies a range of light regimes, with canopy transmittance varying 28-fold across species, from 129 14% for D. goldiana to 356 19% for D. clintoniana (Table 3). Of the 13 traits measured, most were positively correlated with canopy transmittance across species in nonphylogenetically corrected analyses, but the correlation was significant only for Amax (r = 052*) with gs (r = 058*; Fig. 4, Table 4). Several other traits were significantly correlated with each other, including Amax with k (r = 081**), frond narrowness (r = 069*) with gs (r = 094***); Rmass with Amax, mass (r = 044*); R and Rmass with each other (r = 088***) and each with ICP (R, r = 089***; Rmass r = 074**) with LCP (R, r = 083**; Rmass r = 072*); SLA with Amax, mass (r = 072**), Rmass (r = 066*), frond narrowness (r = 072**), gs (r = 054*) with average stomatal density (r = 076**); ICP with LCP (r = 098***); plant narrowness with leaf tip angle (r = 064*); and gs and k each with frond narrowness (gs, r = 075**; k, r = 066*), and with each other (r = 086***; Table 4). There was no evidence of adaptive crossover in static light response curves on either a mass or area basis; species from the brightest environments consistently outperformed species from the shadiest environments (Fig. 5). Average SLA did not differ significantly between polyploid (382 39 cm2 per g) and diploid (298 49 cm2 per g) taxa (P = 023). In the phylogenetically structured analyses, we found a significant correlation (P ≤ 005) between trait and canopy transmittance contrasts in a majority of the 10 000 regression analyses on binary trees for Amax (58% with P ≤ 005), SLA (61% with P ≤ 005) and k (61% with P ≤ 005; Table 5, Appendix S1 in Supporting Information). Contrasts for each of the other 10 traits were not significantly correlated with per cent canopy transmittance contrasts for a majority of repetitions. D. cristata B D. clintoniana A D. celsa B D. ludoviciana D. celsa A D. goldiana D. clintoniana B D. expansa D. campyloptera B Fig. 2. Initial phylogenetic tree used in the phylogenetically independent contrast (PIC) analyses, based on a maximum likelihood topology from Sessa, Zimmer & Givnish (2012a). A, B, C following taxon names denote multiple genomes present in polyploid species. Tips were dropped randomly in the regression analyses so that each polyploid was represented by only one tip at a time (see Fig. 3). Branches are proportional to expected number of nucleotide substitutions per site. Bar indicates 001 changes. D. carthusiana A D. campyloptera A D. intermedia D. carthusiana B D. cristata A D. clintoniana C D. marginalis D. fragrans 0·01 © 2013 The Authors. Functional Ecology © 2013 British Ecological Society, Functional Ecology, 28, 108–123 114 E. B. Sessa & T. J. Givnish D. ludoviciana D. celsa A D. goldiana D. clintoniana B D. expansa D. campyloptera B D. carthusiana A D. intermedia D. cristata A D. marginalis D. fragrans 0·01 Fig. 3. One random binary tree (out of 48 possible trees) used in the phylogenetically independent contrast (PIC) calculations for the field studies. Branches are proportional to expected number of nucleotide substitutions per site. Bar indicates 001 changes. Table 3. Environmental, morphological, photosynthetic and functional traits measured in the field. Means standard errors are given. No stomatal density data were collected for D. fragrans due to density of abaxial trichomes Species % Canopy transmittance D. D. D. D. D. D. D. D. D. D. D. 280 205 249 356 253 174 292 129 212 229 326 campyloptera carthusiana celsa clintoniana cristata expansa fragrans goldiana intermedia ludoviciana marginalis 13 20 34 19 12 14 25 14 16 27 14 Amax (lmol CO2 m2 per s) 400 527 245 669 596 411 713 353 494 486 499 Rmass (nmol CO2 g2 per s) D. D. D. D. D. D. D. D. D. D. D. campyloptera carthusiana celsa clintoniana cristata expansa fragrans goldiana intermedia ludoviciana marginalis 141 146 132 113 172 515 73 114 182 89 40 26 41 51 17 23 116 18 27 22 13 04 04 05 03 05 03 04 04 04 02 03 02 030 033 045 046 039 103 047 032 067 044 016 SLA (cm2 g1) 452 433 341 246 439 497 155 356 316 211 256 R (lmol CO2 m2 per s) 18 33 23 14 15 27 35 17 20 6 12 k (lmol PAR m2 per s) 004 009 024 005 005 023 006 007 011 007 002 294 444 278 413 499 298 643 284 464 324 283 Average stomatal density (mm2) 327 273 369 398 349 347 – 282 442 521 544 18 13 20 14 18 19 14 17 29 38 48 58 38 38 43 46 63 43 30 29 18 Plant narrowness (height:width) 062 081 098 127 120 091 064 077 076 129 065 006 003 006 011 008 006 005 003 003 018 004 ICP (lmol PAR m2 per s) 235 266 763 312 348 1012 441 296 830 311 094 05 055 506 043 051 273 06 079 186 033 011 Frond narrowness (length:width) 201 271 325 401 430 223 477 272 303 399 333 003 004 007 008 009 004 010 005 003 010 003 LCP (lmol PAR m2 per s) 43 49 2208 569 634 2575 799 57 1843 577 166 093 110 1726 082 097 847 11 172 489 07 02 Leaf tip angle (0–90°) 876 650 623 450 553 560 852 700 638 749 720 10 17 38 41 22 22 36 29 12 35 19 Amax, mass (nmol CO2 g2 per s) 190 223 84 160 259 202 115 123 155 100 126 27 21 6 14 15 16 31 15 11 7 5 gs (mol H2O m2 per s) 006 007 003 01 009 004 014 004 006 007 007 001 001 00 001 001 001 001 00 00 00 001 ICP, instantaneous compensation point; LCP, leaf compensation point; SLA, specific leaf area. For all traits, regressions on binary trees produced both positive and negative correlations between trait contrasts and native per cent canopy transmittance contrasts (Table 5). For most traits, the direction of the correlation (either positive or negative) for the majority of repetitions was the same as in the phylogenetically unstructured analyses. For three traits – Amax, LCP and ICP – exactly half of the correlations were positive and half negative, and for one trait – k – the majority of repetitions in the phylogenetically structured analyses produced negative correlations with light availability contrasts, while the unstructured analysis produced a positive correlation (Tables 4, 5). Discussion CORRELATED EVOLUTION OF PHOTOSYNTHETIC PARAMETERS AND LEAF TRAITS WITH LIGHT REGIME Our field measurements indicate that trends in photosynthetic, morphological and ecological traits in eastern North American Dryopteris generally accord with © 2013 The Authors. Functional Ecology © 2013 British Ecological Society, Functional Ecology, 28, 108–123 Leaf form and photosynthesis in Dryopteris 115 1·2 1·0 0·8 0·4 0·6 R (µmol m−2 s−1) 6 4 5 (b) D. campyloptera D. carthusiana D. celsa D. clintoniana D. cristata D. expansa D. fragrans D. goldiana D. intermedia D. ludoviciana D. marginalis 2 0·2 3 Amax (µmol CO2 m−2 s−1) 7 (a) 10 15 20 25 30 35 40 10 15 % Canopy transmittance 25 30 35 40 35 40 35 40 (d) 10 8 6 ICP (µmol m−2 s−1) 2 4 50 40 30 k (µmol m−2 s−1) 60 12 70 (c) 20 % Canopy transmittance 10 15 20 25 30 35 40 10 15 % Canopy transmittance 30 250 200 150 Amax mass (nmol CO2 g−2 s−1) 100 40 30 20 0 LCP (µmol m−2 s−1) 25 (f) 10 (e) 20 % Canopy transmittance 10 15 20 25 30 35 40 % Canopy transmittance 10 15 20 25 30 % Canopy transmittance Fig. 4. Field measurements of gas exchange, morphological and functional traits plotted against per cent canopy transmittance. Species means SE are shown, and standard linear regression lines are plotted for those traits that were significantly correlated with per cent canopy transmittance. (a) Amax; (b) R; (c) k; (d) ICP; (e) LCP; (f) Amax, mass (g) Rmass; (h) specific leaf area (SLA); (i) average stomatal density; (j) plant narrowness; (k) frond narrowness; (l) leaf tip angle; (m) gs. Data points are coloured by species according to the legend in (a); polyploids are shown as squares, diploids circles (For interpretation of the references to colour in this figure legend, the reader is referred to the online version of this article.). ICP, instantaneous compensation point; LCP, leaf compensation point. theoretical predictions based on classical economic theory (Bj€ orkman, Ludlow & Morrow 1972; Bj€ orkman 1981; Givnish 1988; Givnish, Montgomery & Goldstein 2004). Species from sunnier habitats tend to have higher photosynthetic and stomatal conductance rates per unit area, require more light to saturate photosynthesis, have lower SLAs, higher stomatal densities and increased frond narrowness (the latter indicating that leaves were generally longer than broad; Fig. 4). We did not find significant statistical support for most of these results, however, as only Amax and gs are significantly correlated with light availability in the phylogenetically unstructured analyses, the remaining correlations being in the expected directions but not achieving statistical significance at the 5% level (Table 4). In the phylogenetically structured analyses, Amax is again significantly correlated with per cent © 2013 The Authors. Functional Ecology © 2013 British Ecological Society, Functional Ecology, 28, 108–123 116 E. B. Sessa & T. J. Givnish (g) 400 300 SLA (cm2 g−1) 40 30 10 200 20 Rmass (nmol g−2 s−1) 50 60 500 (h) 10 15 20 25 30 35 40 10 15 % Canopy transmittance 30 35 40 15 20 25 30 35 35 40 35 40 1·4 1·2 1·0 0·8 0·6 Plant narrowness (height:width) 55 50 45 40 35 10 40 10 15 20 25 30 2·0 70 60 40 2·5 50 3·0 3·5 Leaf tip angle 4·0 80 4·5 (l) 90 % Canopy transmittance 5·0 % Canopy transmittance Frond narrowness (length:width) 25 (j) 30 Average number of stomata mm−2 (i) (k) 20 % Canopy transmittance 10 15 20 25 30 35 40 % Canopy transmittance 10 15 20 25 30 % Canopy transmittance 0·10 0·08 0·04 0·06 gs (mol m−2 s−1) 0·12 0·14 (m) 10 15 20 25 30 35 40 % Canopy transmittance Fig. 4. Continued. © 2013 The Authors. Functional Ecology © 2013 British Ecological Society, Functional Ecology, 28, 108–123 Leaf form and photosynthesis in Dryopteris 117 Table 4. Correlations among all traits measured in the field Canopy Amax R k ICP LCP Amax, mass Rmass SLA Average stomatal density Plant narrowness Frond narrowness Leaf tip angle gs Amax R k ICP LCP Amax, mass Rmass SLA Average stomatal density 052 – – – – – – – – – 037 007 – – – – – – – – 022 081 006 – – – – – – – 040 032 089 000 – – – – – – 038 044 083 013 098 – – – – – 009 027 016 024 002 008 – – – – 046 024 088 018 074 072 044 – – – 047 046 028 034 027 030 072 066 – – 048 022 009 013 012 011 049 032 076 – 010 015 017 003 004 004 009 007 008 017 – – – – – – – – – – – – – – – – – – – – – 008 – – – – – – – – – – – – 008 – – – – – – – – – – – – – Plant narrowness Frond narrowness Leaf tip angle gs 047 069 018 066 022 028 021 047 072 047 001 008 038 004 033 034 033 038 024 010 058 094 014 086 031 041 011 035 054 019 043 064 003 075 ICP, instantaneous compensation point; LCP, leaf compensation point; SLA, specific leaf area. See text and Table 3 for data and units. Significant correlations (P ≤ 005) are shown in bold. canopy transmittance in a majority of analyses, as are SLA and k. Amax is thus the only trait to be strongly correlated with light availability in both the phylogenetically structured and unstructured analyses. Our measures of plant stature (plant narrowness and leaf tip angle) show very little or no correlation with PFD (Fig. 4, Table 4). The values of Amax and other photosynthetic parameters that we report here for Dryopteris are similar to those that have been found in ferns previously. Amax in our species ranged from 25 03 to 71 04 lmol CO2 m2 per s, which corresponds roughly to the middle of the range of Amax values that have been reported for other fern genera (Ludlow & Wolf 1975; Nobel, Calkin & Gibson 1984; Hollinger 1987; Brodribb, Feild & Jordan 2007). Previous estimates for Dryopteris range from 18 lmol CO2 m2 per s in Asian D. crassirhizoma (Maeda, 1970) to 40 lmol CO2 m2 per s in D. arguta (Pittermann et al. 2011) and 90 lmol CO2 m2 per s in D. filix-mas (Bauer, Gallmetzer & Sato 1991). Previous researchers have reported instantaneous light compensation points in ferns infrequently, but our values (Table 3) are somewhat higher than those documented previously for Dryopteris [which ranged from 05 lmol m2 per s in the shade to 17 lmol m2 per s in the sun (Bannister & Wildish 1982)], and are more similar to values reported by Hollinger (1987) for two understorey species of Blechnum and Pteridium (73 and 116 lmol m2 per s, respectively). In addition to the relationships with PFD, several traits are also correlated with each other as expected based on theoretical predictions. Amax is significantly positively correlated with k, as expected based on the Michaelis–Menten eqn (1) (Farquhar & Sharkey 1982): when maximum photosynthetic rate increases, so too should the PFD required to half-saturate photosynthesis. R and Rmass are also both strongly positively correlated with ICP and LCP, and the PFDs at which carbon consumed by respiration and produced by photosynthesis are balanced. As respiration increases (i.e. more carbon is lost to respiration), the amount of light required to balance carbon consumption must increase. ICPs and LCPs range from 001% to 02% full sunlight and are each well below the PFDs necessary to partly saturate photosynthesis. Both are negatively correlated with PFD, which is contrary to expectations, as the amount of light required to balance respiration should increase with daily PFD to which a species is adapted (Givnish, Montgomery & Goldstein 2004). Several photosynthetic parameters show greater integration with each other and with other traits when considered on a mass rather than an area basis (Table 4), although only area-based Amax is significantly correlated with native PFD. Because competition should favour plants that maximize returns on energy investment (Givnish 1988, 1995), and mass-based estimates incorporate energy investment in leaf construction, photosynthesis on a mass basis should be more closely tied to relative performance and competition between species than photosynthesis on an area basis. It is therefore surprising that Amax but not Amax, mass is significantly correlated with native PFD; in fact, Amax, mass shows almost no relationship to native PFD (Fig. 4f). However, ferns are known to respond conservatively to desiccation (Brodribb & Holbrook 2004), and this sensitivity is driven at least in part by low rates of area-based leaf hydraulic conductance (Woodhouse & © 2013 The Authors. Functional Ecology © 2013 British Ecological Society, Functional Ecology, 28, 108–123 118 E. B. Sessa & T. J. Givnish Table 5. Results of independent contrast analyses on binary trees for traits measured in the field against native per cent canopy transmittance (a) Amax R k ICP LCP Amax, mass Rmass SLA Average stomatal density Plant narrowness Frond narrowness Leaf tip angle gs (b) P ≤ 005 (%) % Positive 58 45 61 17 17 49 39 61 34 42 39 42 42 50 42 33 50 50 33 25 8 81 55 59 33 83 ICP, instantaneous compensation point; LCP, leaf compensation point; SLA, specific leaf area. Percentages indicate the frequency of binary trees (out of 48 possible topologies) for which P-values were below 005 and r was positive. Fig. 5. Static light response curves of species from the two brightest habitats (D. marginalis and D. clintoniana) and the two shadiest habitats (D. goldiana and D. expansa). (a) area-based curves (lmol CO2 m2 per s); (b) mass-based curves (nmol CO2 g1 per s). Points are mean SE. Curves do not show adaptive crossover, with species from shady habitats outperforming sun species at low photon flux densities (PFDs) and the reverse at high PFDs (For interpretation of the references to colour in this figure legend, the reader is referred to the online version of this article.). Nobel 1982; Brodribb & Holbrook 2004). Our measurements of maximum stomatal conductance (Table 3) are at the low end but well within the range of values previously reported for Dryopteris by Pittermann et al. (2011), and for other ferns by Hollinger (1987) and Brodribb & Holbrook (2004); these estimates range from 001 to 023 mol H2O m2 per s. gs was significantly positively correlated with native PFD, Amax, k and frond narrowness, and negatively with SLA, indicating that longer, narrower and thinner leaves tended to have higher maximum stomatal conductance rates. Low conductance rates will directly influence transpiration and photosynthetic rates, which suggests that area rather than mass-based estimates of these parameters may be more meaningful for ferns, in that they incorporate the surface area from which evaporation proceeds. Maximum stomatal conductance in Dryopteris is not significantly correlated with either mass-based photosynthetic parameter but was significantly positively correlated with area-based Amax (Table 4). The lack of broad statistical support for the observed trends in trait correlation with native PFD may reflect several phenomena. First, individual species do not appear to demonstrate the differential adaptation to light regimes we had expected. We saw no evidence of adaptive crossover (Givnish, Montgomery & Goldstein 2004) in static light responses, in which species from sunnier microsites outperform species from shady habitats at high PFDs, with the reverse at low PFDs. In contrast, species from sunnier sites outperformed species from shadier sites at all PFDs, in both area-based and mass-based curves (Fig. 5). As noted above, the absence of the expected mass-based relationship is particularly striking, as these estimates incorporate leaf construction costs via SLA and are therefore expected to be more tightly tied to species’ relative competitive abilities. Species from the brightest environments, including D. clintoniana, D. fragrans and D. marginalis, rarely occupy the extremes of any given trait, usually being outperformed by species from intermediate habitats (Fig. 4, Table 3). Such species rarely co-occur with other Dryopteris in the field, but apparently this is not due to any advantage such ‘sun’ species have over ‘shade’ species in carbon uptake at high PFDs per se. A likely explanation for the somewhat lower photosynthetic rates in these species is the much greater evaporative demand in their high-PFD environments. In ferns – as opposed to angiosperms or gymnosperms – low hydraulic conductance may strongly restrict photosynthesis, as well as growth and survival, interfering with the usual rise in photosynthesis with PFD. A second explanation for the lack of significant patterns across species related to PFD may be the fact that overall, there was relatively little variation among species in PFD, with © 2013 The Authors. Functional Ecology © 2013 British Ecological Society, Functional Ecology, 28, 108–123 Leaf form and photosynthesis in Dryopteris 119 canopy openness varying only 28-fold across species. A narrow range of PFD decreases by itself the likelihood of significant relationships of individual traits to PFD across species, even if such relationships can be seen for species inhabiting a broader gradient. We note that many of the expected positive relationships among plant traits and PFD were observed but were simply not significant; perhaps a greater number of species, or occupancy of a broader range of light regimes, might have made these patterns significant. Finally, and perhaps most importantly, many of the traits we examined are likely influenced not just by light availability but by the correlation of PFD with temperature, vapour pressure deficit, wind speed and other environmental variables. Several previous studies on ferns have documented one or more of the expected relationships among photosynthetic parameters that we see in Dryopteris. In a study of three species from different genera (Adiantum, Thelypteris and Woodwardia) growing in different light regimes, Hill (1972) found that species from sunnier habitats had higher maximum photosynthetic rates, light compensation points and light saturation points compared with species from a shadier habitat. Lower compensation points and SLAs in species from shady habitats have been documented in single species from several fern genera (Ludlow & Wolf 1975; Bannister & Wildish 1982; Brach, McNaughton & Raynal 1993), as have higher stomatal densities (Ludlow & Wolf 1975) in species from sunny habitats. Higher photosynthetic capacity with increasing light availability has also been documented in Blechnum (Salda~ na et al. 2009), Adiantum (Yeh & Wang 2000) and in D. intermedia (Brach, McNaughton & Raynal 1993), among others. However, in additional studies examining fern traits and habitat preference, soil moisture was found to be a primary factor influencing fern distributions in Ohio (Greer, Lloyd & McCarthy 1997) and Quebec (Karst, Gilbert & Lechowicz 2005), and Nobel, Calkin & Gibson (1984), in a study of gas exchange in 14 species of ferns in a greenhouse, found that water vapour and CO2 conductance were better predictors of maximum photosynthetic rates than was PFD. Reudink et al. (2005) noted that D. intermedia growing in a damp, but open site appeared to experience greater water stress, as indicated by negative water potential, than other species growing in the same environment, and concluded that D. intermedia’s ability to acclimate to high PFDs was limited, with moisture playing a greater role in determining its distribution. R€ unk, Zobel & Zobel (2010), in a study of three Estonian species of Dryopteris (including D. carthusiana and D. expansa), determined that species’ distributions and abundance were most influenced either by edaphic factors or by ‘locale effects’ that were not specifically related to any one variable. Taken together, these results suggest that fern distributions and adaptation of specific traits are likely shaped by the interaction of a number of environmental factors. That light availability is probably joined in its effects by moisture availability and evaporative demand may account for our general observation of expected but nonsignificant correlations between traits and PFD, and for the lack of expected pairwise performance comparisons at the species level between taxa from sun and shade environments. It is important to recognize that several traits expected to show positive relationships to PFD based on classic economic theory (i.e. based solely on the putative effects of PFD) might also show such relationships based on hydraulic considerations. As we suggested in the Introduction, a greater sensitivity of plastid movement to PFD in ferns might preserve a positive relationship of Amax to PFD while reducing or eliminating that of k and R, by reducing self-shading and maintaining a constant plastid mass. Thicker leaves or leaves with higher mass per unit area may be an adaptation to greater evaporative demand in brighter sites, reducing leaf and evaporative surfaces in order to reduce tissue desiccation and preserve xylem function (Creese, Lee & Sack 2011). Our gs values were significantly correlated with PFD (Table 4), but this correlation could also have been driven by differences in water availability between the sites, if brighter habitats happened also to be drier. Conductance in several fern species has been reported to be more strongly influenced by soil water status than by other variables (Nobel 1978; Hollinger 1987), and several recent studies have revealed that fern stomata lack many of the active control mechanisms found in angiosperms (Doi, Wada & Shimazaki 2006; Doi & Shimazaki 2008; Brodribb et al. 2009; Brodribb & McAdam 2011), instead opening and closing passively in response to hydraulic changes and leaf water status (Brodribb & McAdam 2011; McAdam & Brodribb 2012). This further suggests that hydraulic constraints, rather than responses to PFD per se, may be primarily responsible for shaping morphological and physiological diversity in these ferns. Indeed, decreased conductance in brighter environments could countervail the general tendency towards higher Amax, k and R and lower SLAs in higher-PFD environments. TRANSGRESSIVE TRAIT EXPRESSION IN POLYPLOIDS The eastern North American Dryopteris complex includes five allopolyploids – tetraploids D. carthusiana, D. cristata, D. campyloptera, D. celsa and hexaploid D. clintoniana – the latter three of which have both parental species extant (Sessa, Zimmer & Givnish 2012b). We expected to see evidence of transgressive expression in these species relative to their parents in at least some of the traits measured. Novel or extreme trait expression can allow hybrids to escape competition and the effects of minority cytotype exclusion and will tend to favour their establishment and long-term success (Abbott 1992; Rieseberg 1997; Rieseberg, Archer & Wayne 1999; Buerkle et al. 2000; Rieseberg et al. 2003; Quintanilla & Escudero 2006). Two recent studies have also shown that polyploids tend to occupy larger geographic ranges than their progenitor taxa (Parisod, Holderegger & Brochmann 2010; Parisod 2012). © 2013 The Authors. Functional Ecology © 2013 British Ecological Society, Functional Ecology, 28, 108–123 120 E. B. Sessa & T. J. Givnish This is true of D. campyloptera, D. celsa and D. clintoniana (Sessa, Zimmer & Givnish 2012b) and suggests that in some traits they must be transgressive relative to their parents. Sessa, Zimmer & Givnish (2012b) also found that the allotetraploid hybrids have resulted from crosses between diploid parents that display intermediate levels of genetic divergence relative to all possible progenitor pairs. Such intermediate levels of parental divergence have been found to be linked to transgressive trait expression in hybrid angiosperms (Stelkens & Seehausen 2009). Contrary to our expectations, we found little evidence for transgressive trait expression in any of the three allopolyploids we examined. In almost all traits, measurements in the polyploids were intermediate relative to their parents and frequently overlapped significantly with one or both parents (Fig. 4). SLA was also not significantly different between polyploids and diploids. Transgressive expression of photosynthetic parameters is therefore evidently not the means by which these allopolyploid taxa are being maintained. However, the native PFDs of two of the three allopolyploids (D. campyloptera and D. clintoniana) were transgressive relative to their parental species (Fig. 4), with each allopolyploid occupying a much brighter habitat than its parents. Coupled with the transgressive ranges of these species relative to their parents, this points to the existence of physiological differences that provided the allopolyploid taxa an advantage in geographic range that apparently allowed them to coexist with their progenitors at a regional scale. As discussed above, water balance mediated by hydraulics is the most likely driving factor. Although we found no significant difference in SLA between polyploids and diploids, this does not rule out the possibility of an increase in tracheid size due to polyploidy that could affect species’ hydraulic conductance and thus their ability to tolerate brighter habitats. Further studies of the allopolyploids and their parents, including sampling from multiple populations of each in the field, will be needed in order to determine the relative roles of light and water availability in influencing these species’ evolution. Conclusions The current study is the first to document physiological and morphological traits in a widespread, closely related group of ferns whose phylogeny is well understood, and to attempt to determine whether photosynthetic PFD has been a primary factor driving adaptation in fern leaf form and physiology. Although we found little evidence to support PFD as the main determinant of diversification in the traits measured, our results suggest several avenues for future studies. Common garden studies, in which species are grown together and environmental variables can be carefully controlled, will be particularly important, and will allow us to more rigorously examine the extent to which species may be adapted to their native light regimes. Such studies will allow both ‘soft’ tests of adaptation, in which traits can be compared among species grown within the same PFD and related to the native PFDs of each species in the field (Givnish, Montgomery & Goldstein 2004), and ‘hard’ tests, which will allow us to ask whether species showing the highest realized rates of photosynthesis shift with light treatment, and if they are the species that occupy habitats with similar native light regimes. Our results also indicate that hydraulic demands may have played a key role in the physiological and morphological evolution of these ferns, supporting results from several recent studies that have found significant differences between ferns and other land plants in traits related to water balance, including hydraulic conductance, vein density and the nature of fern stomatal responses (Brodribb & Holbrook 2004; Brodribb, Feild & Jordan 2007; Boyce et al. 2009; Watkins, Holbrook & Zwieniecki 2010; Brodribb & McAdam 2011; McAdam & Brodribb 2012). This study is the first to propose a statistical framework for incorporating phylogeny into comparative analyses when the subjects include species with reticulate evolutionary histories. Phylogenetic relationships must be considered in comparative analyses due to the danger of inflating type I error rates when species are erroneously considered to be independent samples (Felsenstein 1985). The method we present allows for the incorporation of phylogeny even in the case of hybridization or polyploidy, by accounting for all possible sets of relationships (trees) for a given set of taxa. The results of the phylogenetically structured and unstructured analyses presented here are largely congruent with each other, and this agreement increases our confidence in the results. However, the distribution of negative and positive r values (Table 5) obtained from repetitive PIC analyses utilizing all possible trees indicates that the placement of hybrid species in the tree can greatly influence the results of such analyses, and speaks to the importance of incorporating phylogeny in comparative studies and considering carefully the placement of reticulate taxa. If we had selected only a single tree, for example, our results for any given trait would have been either 100% positive or negative, when in fact there is a distribution between negative and positive correlations depending on which tree is utilized in a given repetition of the analysis. Many researchers now incorporate phylogeny into their comparative studies of ecological and physiological traits, and we hope that the method presented here will be useful in such studies involving hybrid and/or polyploid organisms. Acknowledgements The authors thank A. Jandl, T. Goforth, P. Gonsiska, C. Line, J. Perry and K. Woods for help in the field, and the Finger Lakes Land Trust, Nature Conservancy of North Carolina, Huron Mountain Club, Blue Ridge Parkway, Fernwood Botanical Gardens, and J.E. Watkins, Jr. and J. Perry for allowing us access to field populations. Many thanks to E. Kruger for advice on this manuscript, and to C. 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