ECOINF-00363; No of Pages 6 Ecological Informatics xxx (2012) xxx–xxx Contents lists available at SciVerse ScienceDirect Ecological Informatics journal homepage: www.elsevier.com/locate/ecolinf A Model Web approach to modelling climate change in biomes of Important Bird Areas Jon Olav Skøien a,⁎, Michael Schulz a, Gregoire Dubois a, Ian Fisher b, Mark Balman c, Ian May c, Éamonn Ó Tuama d a Land Resource Management Unit, Institute for Environment and Sustainability, Joint Research Centre of the European Commission, 21027 Ispra (VA), Italy Royal Society for the Protection of Birds, RSPB, The Lodge, Potton Road, Sandy, Bedfordshire, SG19 2DL, UK BirdLife International, Cambridge, Wellbrook Court, Girton Road, Cambridge, CB3 0NA, UK d Global Biodiversity Information Facility (GBIF), Copenhagen, Denmark b c a r t i c l e Available online xxxx Keywords: Web services Ecological forecasting Model Web Bird conservation i n f o a b s t r a c t Protected Areas (PA) are designated to conserve species and habitats and protect against anthropogenic pressures. Park boundaries, however, offer no protection against climatic change and where boundaries are actual constructions, they may also act as physical barriers to species movements to new suitable habitats. The means for assessing the consequences of climate change on ecosystems and for identifying gaps in PA connectivity are therefore a conservation priority. The complexity of the scientific questions raised requires a multidisciplinary approach given the variety of the information required. This includes species observations and their theoretical distributions, as well as ecosystem assessments and climate change models. Such complex questions can be more easily dealt with if there is appropriate access to data and models, a strategy endorsed by GEO-BON, the Group on Earth Observations Biodiversity Observation Network. In this paper, we show how data and models recently made available on the World Wide Web can be coupled through interoperable services and used for climate change forecasting in the context of Important Bird Areas (IBAs) and how, for any bird species described in the databases, areas can be identified where the species may find a more suitable environment in the future. As presented, this is an example of the Model Web. © 2012 Elsevier B.V. All rights reserved. 1. Introduction Species distribution models (SDMs) are typically used for identifying the suitability of habitats based on observations of the species and a set of environmental indicators assumed to include the species' niche. There are a range of such models used in ecology (Guisan and Zimmerman, 2000). A relatively widely used method is based on the Mahalanobis distance to create environmental suitability maps (ESM) (Clark et al., 1993; Knick and Dyer, 1997; Rotenberry et al., 2002). Another method is the MaxEnt method (Phillips et al., 2006) which is based on the creation of pseudo-absence locations. Common to these and other models is that they can be used to generate suitability or similarity maps which can help in identifying regions where a given species is more likely to be observed. These models can therefore be also used to define those locations where species could migrate should their current habitats become unsuitable as a result of human activities. In addition to modelling the potential distribution of species, such models can also be used for estimating similarities between ecosystems found in protected areas and those observed in their surroundings. This ⁎ Corresponding author. E-mail address: [email protected] (J.O. Skøien). approach uses the size of the area with a similarity level above a certain threshold as a measure of the ecological uniqueness of a national park (Hartley et al., 2007; Nelson et al., 2009). There are a range of challenges in using species distribution modelling for predicting the effects of climate change (Sinclair et al., 2010). In this paper, we will focus on how to simplify the use of such models through coupling of interoperable web services, a concept that is also referred to as the Model Web (Geller and Turner, 2007). In the Model Web, a simple interoperable web service which can be either offering or processing data, and delivering the result in a standardized format, can be reused by the next service. While many web services are already available, only a few of these are sufficiently interoperable for the tasks outlined in this paper. In the ecological world, many services are Web Map Services, where maps can be overlaid in a web client. These services are, however, usually deployed for improving the visualisation of the environmental context of the analysed information rather than for delivering new products which can be further processed. It is the purpose of this paper to discuss how a number of interoperable web services can interact with each other and produce new information. The services described have been developed mainly in relation to establishing the Digital Observatory for Protected Areas (DOPA), a biodiversity information system (Dubois et al., 2010a, 2010b) developed by the Joint Research Centre of the European Commission in 1574-9541/$ – see front matter © 2012 Elsevier B.V. All rights reserved. http://dx.doi.org/10.1016/j.ecoinf.2012.12.003 Please cite this article as: Skøien, J.O., et al., A Model Web approach to modelling climate change in biomes of Important Bird Areas, Ecological Informatics (2012), http://dx.doi.org/10.1016/j.ecoinf.2012.12.003 2 J.O. Skøien et al. / Ecological Informatics xxx (2012) xxx–xxx collaboration with other international organizations, including the Global Biodiversity Information Facility GBIF, UNEP World Conservation Monitoring Centre (WCMC), BirdLife International and the Royal Society for the Protection of Birds (RSPB). In particular, we will present an application of a modelling component of the DOPA, the eHabitat WPS (Dubois et al., 2011) designed as a flexible modelling service for identifying similarities in ecosystems with those found in a reference area. Used in conjunction with other web services providing data on species occurrences (GBIF), bird distribution maps and boundaries of Important Bird Areas (IBAs), both developed by the RSPB and BirdLife International, we will show that eHabitat can easily be used for modelling ecological niche for birds and for assessing possible climate change impact on IBAs. We will first introduce the use of a simple statistical function, the Mahalanobis distance, for identifying ecosystems of similar properties. We will then describe how this function can be used for a broad range of purposes, from ecological niche modelling to climate change forecasting, by simply using different variables. We will go on to discuss the benefits of making such models available via web based services, in particular Web Processing Services, as this allows different models and data services to build more complex modelling chains. Lastly, a case study will be presented to illustrate how these various web services can interact with each other and provide useful information to decision makers. The example used will address the potential impact of climate change on the habitat of an African bird, Grauer's Swamp-warbler. We will conclude with a discussion on the advantages and limitations of using such interacting services. 2. Methods 2.1. Mahalanobis distance and similarity index For a set of environmental variables available for the region of interest, there are different ways of modelling the environmental similarity between this region and a reference geometry, typically a set of points referring to presence observations or the points within a protected area. The Mahalanobis distance Di here is used as a measure of the similarity of a set of environmental variables between a pixel i and the averages of these environmental variables for the reference geometry, and is defined as: 2 T Di ¼ ½xi −μ ½C −1 ½xi −μ ð1Þ where xi is the vector of the values of the environmental variables for pixel i, μ is the mean of the environmental variables for the reference geometry, and [C] is the covariance matrix of the environmental variables for the reference geometry. The covariance matrix for n variables is given by 2 COV ðx1 ; x1 Þ 6 COV ðx2 ; x1 Þ 6 ½C 6 ⋮ 6 4 ⋮ COV ðxn ; x1 Þ 3 COV ðx1 ; x2 Þ ⋯ ⋯ COV ðx1 ; xn Þ COV ðx2 ; x2 Þ ⋯ ⋯ COV ðx2 ; xn Þ 7 7 7 ⋮ ⋱ ⋮ 7 5 ⋮ ⋱ ⋮ COV ðxn ; x2 Þ COV ðxn ; xn Þ ð2Þ COV ðxk ; x1 Þ ¼ j¼1 1 0 xkj −μ k xlj −μ l @ A: J 2.2. Ecological niche modelling & ecological forecasting The traditional use of the Mahalanobis distance is for identifying habitats for a given species (see e.g. Clark et al., 1993; Rotenberry et al., 2006). Instead of computing the mean and the variances, μ and [C], over a whole protected area, one is computing these statistics for the ecological variables measured at all the locations where a species has been observed. In this way, the Mahalanobis distance can be computed to produce a map of probabilities of finding habitats that are specific to the given species, a map that is thus a probabilistic representation of the species' ecological niche. Climatic factors are one of the typical parameters one would use when modelling the ecological niche of a species, as these are determinant in species distributions. Three climatic variables, (mean annual precipitation (P), annual average of the biotemperature (B), and the ratio of mean annual potential evapotranspiration to precipitation (PETR)), have been successfully used to generate a bioclimatic scheme at the global level (Holdridge, 1947). This simple scheme can be reconfigured to identify the bioclimatic area in which a species would fall and, using models for climate change, forecasting possible changes to a species' ecological niche has become possible. 3. Establishing a Web Processing Service for ecological forecasting and niche modelling Web service standards (e.g. ISO TC211 and the Open Geospatial Consortium OGC), are the basis for generic services to exchange geographic data and have become relatively straightforward to develop. Less widespread are Web Processing Services (WPS) which provide a standardised interface facilitating the publishing of geospatial processes including any algorithm, calculation or model that operates on spatially referenced data (Schut, 2007). One example of such a WPS where end-users can request from the service the computation of modelling ecological niches is the openModeller WPS (Muñoz et al., 2011). A limitation of the service is that it can use only data available on the server. The means to access other sources of data and models would dramatically extend the number of its potential applications. In the following, we will describe eHabitat, a WPS designed for finding ecological similarities in datasets which can be used for ecological niche modelling or ecological forecasting by accessing other data services. 3.1. Data and associated web services and the covariance between any two variables, xk and xl, with means μk and μl and number of points in the reference geometry J is given by J X with n degrees of freedom, and so we can convert Di2 into p-values. The p-values (or probability values) range from 0.0 representing no similarity to 1.0 for areas which are identical to the mean of the reference area. If the predictor variables are not normally distributed, the conversion is still useful as it rescales the unbounded Di2 values to a [0–1] range. This p-value can be seen as the probability that the pixel i has a similar set of environmental variables as the ones found for the reference area, or of the probability that a pixel in the future has a similar set of environmental variables. ð3Þ The use of the inverse of the covariance matrix makes the Mahalanobis distance independent of the different scales of the variables. Highly correlated variables will have less effect on Di than uncorrelated variables. When the environmental variables used to generate the mean vector and covariance matrix are normally distributed, then Di2 is distributed approximately according to a χ2 distribution 3.1.1. Important Bird Areas (IBAs) A site is recognized as an Important Bird Area (IBA) only if it meets certain criteria, based on the occurrence of key bird species that are vulnerable to global extinction or whose populations are otherwise irreplaceable (http://www.birdlife.org/action/science/sites/). IBAs are identified by BirdLife International, an international partnership of conservation organizations focused on the protection of birds. IBAs are not always parts of the existing network of protected areas, but recognition of a non-protected area as an IBA will usually increase its priority for being protected in future conservation plans. By 2012 around 12,000 IBAs in more than 200 countries/territories had been identified. The boundaries of these IBAs are now accessible through a web service put in place by BirdLife International. Please cite this article as: Skøien, J.O., et al., A Model Web approach to modelling climate change in biomes of Important Bird Areas, Ecological Informatics (2012), http://dx.doi.org/10.1016/j.ecoinf.2012.12.003 J.O. Skøien et al. / Ecological Informatics xxx (2012) xxx–xxx 3 3.1.2. Species' ranges In addition to the IBAs, BirdLife International also provides a collection of predicted species range maps. These have been developed from a variety of data sources, including up-to-date and historic observations and literature ranges. The species maps are offered as polygons that are separated by season (breeding, non-breeding, passage, resident), origin (native, reintroduced, introduced, vagrant) and presence (extant, probably extant, possibly extant, possibly extinct, extinct post 1500). 2. The biotemperature (annual average) 3. The ratio of mean annual potential evapotranspiration (PET) to P: PETR. 3.1.3. Species occurrences There are many organizations that are observing species around the world, and BirdLife International partners play a key role in coordinating this work. For species observations, however, the best internet provider is the Global Biodiversity Information Facility (GBIF) to which the RSPB and BirdLife International also provide their data. GBIF was established and funded by governments in 2001 through an OECD Global Science Forum recommendation making it, today, the world's largest multilateral initiative for enabling free access to biodiversity data via the Internet to underpin scientific research, conservation and sustainable development. The GBIF Data Portal (www.gbif. org) provides unified access to a continually expanding set of biodiversity data records. By 2012, there were over 323 million records from some 8800 datasets from 370 data publishers, derived from a worldwide network of national, regional and thematic Biodiversity Information Facilities (http://www.gbif.org/governance/governingboard/current-participants/). In addition to the search/browse interface on the GBIF Data Portal (http://data.gbif.org) which allows a user to construct and submit complex, filtered queries to the data cache, several REST-based web services for machine to machine access are available (http://data.gbif.org/ tutorial/services). For example, the Occurrence service (http://data. gbif.org/ws/rest/occurrence) can return records for a taxon occurring within a particular geographic bounding box while the Occurrence density web service (http://data.gbif.org/ws/rest/density) provides counts of occurrence records by one-degree cell. Output formats include the international KML (Keyhole Markup Language) OGC standard used by the Google Earth application and other mapping systems. Retrieving correct information about a species is still a challenge because of the lack of standards in taxonomy but some notable progress has been made through the development of the Global Names Architecture (GNA, http://www.gbif.org/informatics/name-services/global-namesarchitecture/), an informatics infrastructure and associated standards for providing unified discovery and access to information about taxon names, thereby enabling the development of a taxonomic “backbone” to underpin biodiversity informatics. ð4Þ 3.2. Climate data The WorldClim data base (http://www.worldclim.org/) provides gridded maps of current and future climate variables at different latitude–longitude resolutions, i.e., 10 min, 5 min, 2.5 min and 30 s. The latter corresponds to grid cells of 0.86 km2 at equator, often referred to as the 1 km grid. The dataset for current climate (Hijmans et al., 2005) is the result of a spatial interpolation process using splines applied to measurements from climate stations. The forecasted data set has been downscaled to the same resolutions from different scenarios of different global circulation models, assuming that the spatial pattern within each grid cell is constant (Ramirez and Jarvis, 2010). High resolution forecast climate data are available for the climate models HADCM3 (Gordon et al., 2000), CCCMA (McFarlane et al., 2005; Scinocca et al., 2008) and CSIRO (Watterson et al., 1998) and the model scenarios A2a and B2a. From these datasets, we derived the variables needed to reconstruct Holridge's life zones. More specifically, we created the following: 1. The mean annual precipitation (P) The biotemperature is the annually averaged temperature after replacing all temperatures below the freezing point with zero values, assuming that plants are dormant at lower temperatures. The PET is obtained from Thorntwaite's equation (Thorntwaite, 1948): 10T a E ¼ 16:0 I where E is monthly potential evapotranspiration (mm), T is the monthly mean temperature (°C) and I is a heat index for a given area which is the sum of 12 monthly index values i, where i is given by: i¼ T 1:514 5:0 ð5Þ and a is an empirically derived exponent which is a function of I: −7 3 −5 2 −2 I − 7:71 10 I þ 1:792 10 I þ 0:49239: a ¼ 6:75 10 ð6Þ The PETR is then found from PET/P, a dimensionless measure of the aridity. The values can be characterised from super-arid to superhumid. Thorntwaite's equation is one of the simplest of many different models for computing PET, and is widely used for large scale computations. To the best of our knowledge, these data were not available elsewhere and we produced a 10 min, 5 min and 2.5 min global raster maps of these variables available through a web coverage service (WCS). We also produced 30 s maps that will be made available to the wider community in the near future. 3.3. Architecture of the Web Processing Service eHabitat was conceived as Web Processing Service in view to allow end-users to interact via the world wide web with a service for modelling Mahalanobis distances (Dubois et al., 2011). The main benefit of such a modelling service is that end-users can use it with a wide range of data and for different purposes. The computation of Mahalanobis distances is also a relatively straightforward model which can easily be linked with other data and modelling services and therefore provides a useful illustration of the main concepts behind the Model Web. eHabitat WPS follows a Service Oriented Architecture (SOA) approach, i.e. the underlying model and code used for computing the Mahalanobis distances are made available as dispersed services/ processes over a network. The process is exposed to the Web using OGC's Web Processing Service standard. It consumes gridded data by accessing Web Coverage Services (WCS) and vector data using OGC standards like e.g. the Web Feature Service (WFS) or KML. An Open Source software stack is used for the service components. The PyWPS implementation was chosen as the service platform. R (R Development Core Team, 2012) builds the back end for the algorithms used to compute the Mahalanobis distances. Individual processes are Python modules and use supporting libraries like Geospatial Data Abstraction Layer (GDAL) or OWSLib to access data, manipulate and send it to R. To perform the modelling, the WPS receives an XML request with references to the coverage services to use as input indicator datasets and a URL pointing to the geometries of interest (in this case locations of species observations). When the computation is completed, the results returned from R are processed to generate different output formats depending on the required use, e.g. raw data formats like GeoTIFF or NetCDF or WMS for visualisation purposes. Such an architecture, where a modelling back end written in R is independently developed Please cite this article as: Skøien, J.O., et al., A Model Web approach to modelling climate change in biomes of Important Bird Areas, Ecological Informatics (2012), http://dx.doi.org/10.1016/j.ecoinf.2012.12.003 4 J.O. Skøien et al. / Ecological Informatics xxx (2012) xxx–xxx from the web services, has already been successfully implemented in other contexts such as an automatic interpolation service for mapping environmental variables (Pebesma et al., 2011). A schema showing the dataflow in eHabitat used for ecological niche modelling is shown in Fig. 1. 4. Case study: Climate change impact on the ecological niche of Bradypterus Graueri In the following, we will illustrate the use of the above described web services for modelling the possible impact of climate change on an African bird. Grauer's Swamp-warbler (Bradypterus graueri) is a medium-sized warbler found in Rwanda, Burundi, eastern Democratic Republic of Congo (DRC) and south-western Uganda. Despite being locally common, this species has a very small and severely fragmented area of occupancy within its small overall range. Many sites are being converted to cultivation or pasture. Thus the species' area of occupancy is declining and, by inference, so is the number of mature individuals. It is therefore classified as Endangered (BirdLife International, 2012). We used the HADCM3 climate model and the eHabitat WPS for computing the Mahalanobis distances using the Holdridge data obtained at the 3 locations where GBIF reported the bird species. As expected, a good match was obtained between the species distribution model and the map of probabilities to find similar bioclimatic conditions. This additionally showed that areas presenting bioclimatic similarities with the bird's habitat were also very limited in a spatial point of view. Repeating the previous exercise of modelling the bioclimatic areas of Grauer's Swamp-warbler using forecasted data for the years 2050 and 2080, a clear reduction of the areas that are suitable in regard to the bioclimatic conditions was found (Fig. 2). By comparing with the current situation it was possible to see that the areas of current habitat became less suitable between 2050 and 2080 for a given climate change scenario. By accessing additional data available through web services, more information potentially useful for conservation decision making could be incorporated. For example, using a human population density map it became clear that possible mitigation strategies in response to climate change will be difficult, as areas suitable in the future for Grauer's Swamp-warbler overlap with areas indicated as having high human population density. 5. Discussion This paper has demonstrated the feasibility of using a set of web services for sharing and modelling data to answer fundamental questions regarding the climatic threat an endangered bird, following the approach described by Geller and Turner (2007). Putting aside the issue of data quality, we have shown how web based services can be connected to model and identify the ecological niche of a species using bioclimatic variables and data on the species occurrences. In a second stage, forecasted climatic data and ancillary information on Important Bird Areas and human population density were used, again through web services, to help decision makers to assess areas where new protected areas could be created to mitigate the impact of climate change. The complete modelling process can be done within minutes by simply using a web browser to use the web client. eHabitat has been developed as one of the building blocks of the Digital Observatory for Protected Areas (DOPA). Other services from DOPA that are dealing with species (eSpecies, http://especies.jrc.ec. europa.eu/), ecosystem services (http://ges.jrc.ec.europa.eu/) or the automatic processing of remote sensing data (eStation, http://estation. jrc.ec.europa.eu/) are in development or already available, like a webbased ool for mapping land-cover change (see Bastin et al., 2012, http:// landcover-change.jrc.ec.europa.eu/). These fundamental components, Fig. 1. Design of the web processing service for forecasting climate change impact on the ecological niche of bird species. Please cite this article as: Skøien, J.O., et al., A Model Web approach to modelling climate change in biomes of Important Bird Areas, Ecological Informatics (2012), http://dx.doi.org/10.1016/j.ecoinf.2012.12.003 J.O. Skøien et al. / Ecological Informatics xxx (2012) xxx–xxx 5 Fig. 2. Screen captures of the web client showing the current modelled ecological niche of Grauer's Swamp-warbler (left) and the one predicted for 2050 (right). when linked with each other, should allow us to serve a broad range of end-users active in conservation, from park-managers to policy makers. While, ideally, one should be able to combine any of these tools with other web services designed for conservation purposes (see e.g. Lifemapper for modelling species distributions, http://www. lifemapper.org/), most of the available services cannot be easily linked with each other when building more complex modelling chains. Therefore, by orchestrating the developments and interactions of a larger number of interoperable services managed by different institutions, the DOPA can be seen mainly as an initiative ensuring a minimum of coordination among key data and model providers to encourage a higher reusability of the services proposed. The Web Processing Service described in this paper is extremely flexible and able to service most kinds of request related to species distribution modelling. The communication with the service is rather cumbersome for most users though, as the request will have to be an XML document that properly defines which data sets to use and the result is also an XML document. To simplify access to the WPS for more occasional users and for demonstration purposes, we implemented the Web Client presented in this paper. As a front end, the proposed Web Client is expected to help the user to select combinations of data, as well as additional thematic layers that can be useful for decisionmaking. This front end is on the one hand limiting the flexibility for the users but, on the other hand, also dramatically simplifies the choice of input data as well as of the climate change model. The possibility to develop web based services with different front ends for people with different skills is a huge asset for capacity building activities in conservation. One can indeed easily customise interfaces to provide tools that are tailored to the different end-users who will then not be required to undergo any time consuming training, provided there is an adequate documentation available, or have to worry about programming and maintaining complex informatics infrastructures. The WPS allows anyone to develop their own client to access the WPS with a different combination of data, and we have ourselves already developed other clients that are consuming the same service to answer slightly different questions (Dubois et al., 2011). This includes a client that accepts any Web Coverage Service as an input. This option is important considering the dramatic increase of available dataset over the internet (Group on Earth Observations, 2011). The number of data services in their catalogue increased from less than 200 in 2010 to over 1500 in November 2011. Connecting Web based models with these data sets means that a user will greatly reduce the necessary time to download, convert and use the data sets with different models on their own desktop. On the other hand, the this architecture is still depending on a reasonably good access to the internet, an issue that should not be neglected, in particular for conservation activities in developing countries or in remote locations. In terms of the drawbacks of the service oriented architecture, a limitation is that accessing the WPS without a Web Client may be seen as an obstacle at first sight by non experts. Many practitioners and researchers will probably need to collaborate with a programmer, either for writing the appropriate XML requests, or by writing a new Web Client that would match the user's needs. The huge advantage of the latter approach is that reproducibility is guaranteed if all (test) datasets are available online. Another benefit is that the approach will also be accessible to other potential users. And whereas computational resources and network access can be restrictive for publishing WPSs, Web Clients will in this case only be responsible for communication of model parameters and the address to Web Services with data. There are also many other initiatives currently ongoing that aim to simplify this process, including the orchestration software Taverna (de Jesus et al., 2012). The Mahalanobis method is one of several SDMs that can be applied to model similarity between regions in space and time. We have for simplicity chosen to use the Mahalanobis distance in this paper, but could easily exchange this method with for example MaxEnt (Phillips et al., 2006). However, the effectiveness of these methods still has some limitations (Sinclair et al., 2010). The most important one is that they predict potential range based on the variability of the environmental indicators at the locations. If this variability is low for a certain variable, none of these methods are able to recognize whether this is because a species is particularly sensitive to this variable, or if this variable just happens to have a low variability and there is another variable that actually limits the habitat. The difference between potential and realized niche is even more important when we apply SDM methods to conservation areas such as PAs and IBAs (Hartley et al., 2007; Nelson et al., 2009). If the covariance matrix in the application of the Mahalanobis distance is only dependant on the borders of the area, then it is likely that the tolerance for change of the protected species for most conservation areas will be underestimated. For these cases, an approach that also takes into the account the occurrences or the predicted species maps should be Please cite this article as: Skøien, J.O., et al., A Model Web approach to modelling climate change in biomes of Important Bird Areas, Ecological Informatics (2012), http://dx.doi.org/10.1016/j.ecoinf.2012.12.003 6 J.O. Skøien et al. / Ecological Informatics xxx (2012) xxx–xxx considered. This involves only a small modification of the Web Client, whereas the same WPS can be used. In relation to the data used for climate change forecasting, the present study used the HADCM3 model for illustration purposes. Different models, scenarios and resolutions can easily be implemented and used for comparison purposes. The uncertainties in these forecasts are of course high, but by comparing the results of different models and scenarios, the user may find here a simple way to assess model uncertainties. This last point is an important fundamental issue, but beyond the scope of this paper. Uncertainties in data and models do propagate between chained services and there is a need to document these uncertainties at all stages. Skøien et al. (2011) discuss how uncertainties can be described and quantified within eHabitat. This is not yet included in the client described in this paper, but will be included in the near future as uncertainties assessments are essential for decision-making and for research. Acknowledgements This work is partly supported by the European Commission, under the 7th Framework Programme, by the EuroGEOSS project funded by the DG RTD. The views expressed herein are those of the authors and are not necessarily those of the European Commission. We would also like to thank an anonymous reviewer and the editor Mark O'Connell for useful comments and suggestions. More information about the DOPA and eHabitat can be found on the Internet, see http://dopa.jrc. ec.europa.eu/ and http://ehabitat.jrc.ec.europa.eu, respectively. References Bastin, L., Buchanan, G., Beresford, A., Pekel, J.-F., Dubois, G., 2012. Open-Source Mapping and Services for Web-Based Land-Cover Validation. (This Volume). BirdLife International, 2012. Species factsheet: Bradypterus graueri. Downloaded from http://www.birdlife.org (on July 25, 2012). Clark, J.D., Dunn, J.E., Smith, K.G., 1993. A multivariate model of female black bear habitat use for a geographical information system. Journal of Wildlife Management 57, 519–526. de Jesus, J., Walker, P., Grant, M., Grool, S., 2012. WPS orchestration using the Taverna workbench: the eScience approach. Computers and Geosciences 47, 75–86. Dubois, G., Clerici, M., Peedell, S., Mayaux, P., Grégoire, J.-M., Bartholomé, E., 2010a. A Digital Observatory for Protected Areas — DOPA, a GEO-BON contribution to the monitoring of African biodiversity. “Proceedings of Map Africa 2010”, 23–25 November 2010, Cape Town, South Africa. Dubois, G., Hartley, A., Peedell, S., de Jesus, J., Tuama, É.Ó., Cottam, A., May, I., Fisher, I., Nativi, S., Bertrand, F., 2010b. DOPA, a Digital Observatory for Protected Areas including Monitoring and Forecasting Services. European Geosciences Union (EGU) 2010, Vienna, Austria, 2–7 May 2010. Dubois, G., Skøien, J.O., De Jesus, J., Peedell, S., Hartley, A., Nativi, S., Santoro, M., Geller, G., 2011. eHabitat: a contribution to the model web for habitat assessments and ecological forecasting. Proceedings of the 34th International Symposium on Remote Sensing of Environment, April 10–15, 2011, Sydney, Australia. Geller, G., Turner, W., 2007. The Model Web: a concept for ecological forecasting. IEEE International Geoscience and Remote Sensing Symposium, Barcelona, Spain, 23–27 July. Gordon, C., Cooper, C., Senior, C.A., Banks, H., Gregory, J.M., Johns, T.C., Mitchell, J.F.B., Wood, R.A., 2000. The simulation of SST, sea ice extents and ocean heat transports in a version of the Hadley Centre coupled model without flux adjustments. Climate Dynamics 16, 147–168. Group on Earth Observations, 2011. GEO VIII. Report of the Architecture and Data Committee (ADC). Document 19. Guisan, A., Zimmerman, N.E., 2000. Predictive habitat distribution models in ecology. Ecological Modelling 135, 147–186. Hartley, A.J., Nelson, A., Mayaux, P., Grégoire, J.-M., 2007. The assessment of African protected areas. JRC Scientific and Technical Reports, EUR 21296. Office for Official Publications of the European communities, Luxembourg, p. 70. Hijmans, R., Cameron, S.E., Parra, J.L., Jones, P.G., Jarvis, A., 2005. Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology 25, 1965–1978. Holdridge, L.R., 1947. Determination of world plant formations from simple climatic data. Science 105, 367–368. Knick, S.T., Dyer, D.L., 1997. Distribution of black-tailed jackrabbit habitat determined by GIS in southwestern Idaho. Journal of Wildlife Management 61, 75–85. McFarlane, N.A., Scinocca, J.F., Lazare, M., Harvey, R., Verseghy, D., Li, J., 2005. The CCCma third generation atmospheric general circulation model. CCCma Internal Rep . 25 pp. Muñoz, M.E.S., Giovanni, R., Siqueira, M.F., Sutton, T., Brewer, P., Pereira, R.S., Canhos, D.A.L., Canhos, V.P., 2011. openModeller: a generic approach to species' potential distribution modelling. GeoInformatica 15, 111–135. Nelson, A., Hartley, A., Dubois, G., Punga, M., 2009. Geoinformatics for the environmental surveillance of protected areas in Africa. StatGIS 2009, Geoinformatics for Environmental Surveillance, Milos, Greece. Pebesma, E., Cornford, D., Dubois, G., Heuvelink, G.B.M., Hristopoulos, D., Pilz, J., Stöhlker, U., Morin, G., Skøien, J.O., 2011. INTAMAP: the design and implementation of an interoperable automated interpolation web service. Computers & Geosciences 37 (3), 343–352. Phillips, S.J., Anderson, R.P., Schapire, R.E., 2006. Maximum entropy modelling of species geographic distributions. Ecological Modelling 190, 231–259. R Development Core Team, 2012. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria3-900051-07-0. Ramirez, J., Jarvis, A., 2010. Disaggregation of Global Circulation Model Outputs, International Center for Tropical Agriculture. CIAT, Cali, Colombia. Rotenberry, J.T., Knick, S.T., Dunn, J.E., 2002. A minimalist approach to mapping species habitat: Pearson's planes of closest fit. In: Scott, J.M., et al. (Ed.), Predicting Species Occurences: Issues of Accuracy and Scale. Island Press, Washington, D. C., USA. Rotenberry, J.T., Preston, K.L., Knick, S.T., 2006. GIS-based niche modelling for mapping species' habitat. Ecology 87, 1458–1464. Schut, P., 2007. Opengis Web Processing Service. OGC Document 05-007r7. (URL:/http:// portal.opengeospatial.org/files/?artifact_id=24151S, Accessed March 12, 2012.). Scinocca, J.F., McFarlane, N.A., Lazare, M., Li, J., Plummer, D., 2008. The CCCma third generation AGCM and its extension into the middle atmosphere. Atmospheric Chemistry and Physics 8, 7055–7074. Sinclair, S.J., White, M.D., Newell, G.R., 2010. How useful are species distribution models for managing biodiverstity under future climates. Ecology and Society 15, 8. Skøien, J.O., Truong, P., Dubois, G., Cornford, D., Heuvelink, G.B.M., Geller, G., 2011. Uncertainty propagation in the Model Web: a case study with eHabitat. Proceedings of the 34th International Symposium on Remote Sensing of Environment, April 10–15, 2011, Sydney, Australia. Thorntwaite, C.W., 1948. An approach toward a rational classification of climate. Geographical Review 38, 55–94. Watterson, I.G., Dix, M.R., Colman, R.A., 1998. A comparison of present and doubled CO2 climates and feedbacks simulated by three general circulation models. Journal of Geophysical Research 104, 1943–1956. Please cite this article as: Skøien, J.O., et al., A Model Web approach to modelling climate change in biomes of Important Bird Areas, Ecological Informatics (2012), http://dx.doi.org/10.1016/j.ecoinf.2012.12.003
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