Dr. Stanley Dunn – Selected
Publications
McLachlin, D.T., Coveny, A.M., Clark, S.M., and Dunn, S.D. (2000) Site-Directed Crosslinking of b to the α, β and a Subunits of the Escherichia coli ATP Synthase. Journal of
Biological Chemistry 275, 17571-17577.
Dunn, S.D., Kellner, E., and Lill, H. (2001) Specific Heterodimer Formation by the
Cytoplasmic Domains of the b and b' Subunits of Cyanobacterial ATP Synthase.
Biochemistry, 40, 187-192.
Cipriano, D.J., Bi, Y., and Dunn, S.D. (2002) Genetic Fusions of Globular Proteins to the ε
Subunit of the Escherichia coli ATP Synthase: Implications for in vivo Rotational Catalysis and
ε Subunit Function. Journal of Biological Chemistry 277, 16782-16790
Revington, M., Dunn, S.D., and Shaw, G.S. (2002) Folding and Stability of the b Subunit of
the F1F0 ATP Synthase. Protein Science 11, 1227-1238
Del Rizzo, P.A., Bi. Y., Dunn, S.D., and Shilton, B.H. (2002) The "Second Stalk" of
Escherichia coli ATP Synthase: Structure of the Isolated Dimerization Domain. Biochemistry
41, 6875-6884.
Diez, M., Börsch, M., Zimmermann, Turina, P., Dunn, S.D. and Gräber, P. (2004) The
Binding of the b Subunit in the ATP Synthase of Escherichia coli. Biochemistry 43, 1054-1064.
Dunn, S.D., Cipriano, D.J., and Del Rizzo, P.A. (2004) ATP Synthase Stalk Subunits b, δ
and ε: Structures and Functions in Energy Coupling. In ATPase Handbook, Ion Pumping
ATPases: Biochemistry, Cell Biology and Pathophysiology (Futai, M., Wada, Y., and Kaplan,
Eds.) Wiley-VCH, Weinheim, Germany.
Gloor, G.B., Martin, L.C., Wahl, L.M., and Dunn, S.D. (2005) Mutual Information in Protein
Multiple Sequence Alignments Reveals Two Classes of Coevolving Positions, Biochemistry 44,
7156-7165.
Cipriano, D.J. and Dunn, S.D. (2006) The Role of the ε subunit in the Escherichia coli ATP
Synthase: The C-Terminal Domain Is Required for Efficient Energy Coupling, Journal of
Biological Chemistry 281, 501-507.
Cipriano, D.J., Wood, K.S., Bi, Y., and Dunn, S.D. (2006) Mutations in the dimerization
domain of the b subunit from the Escherichia coli ATP synthase: Deletions disrupt function but
not enzyme assembly. Journal of Biological Chemistry 281, 12408-12413.
Briere, L.-A.K. and Dunn, S.D. (2006) The Periplasmic Domains of HflKC Oligomerize
through Right-Handed Coiled-Coil Interactions. Biochemistry 45, 8607-8616.
Biochemistry
Dr. Stanley Dunn – Selected
Publications
Del Rizzo, P.A., Bi, Y., and Dunn, S.D. (2006) ATP Synthase b subunit dimerization domain:
a right-handed coiled coil with offset helices. Journal of Molecular Biology 364, 735-746.
Claggett, S.B., Grabar, T. B., Dunn, S.D., and Cain, B.D. (2007) Functional Incorporation of
Chimeric b Subunits into F1F0 ATP Synthase. Journal of Bacteriology 189, 5463-5471.
Wood, K.S. and Dunn, S.D. (2007) Role of the Asymmetry of the Homodimeric b2 Stator Stalk
in the Interaction with the F1 Sector of Escherichia coli ATP Synthase. Journal of Biological
Chemistry 282, 31920-31927.
Dunn, S.D., Wahl, L.M., and Gloor, G.B. (2008) Mutual Information without the influence of
phylogeny or entropy dramatically improves residue contact prediction. Bioinformatics 24, 333340.
Bi, Y., Watts, J.C., Krauss Bamford, P., Briere, L. K., and Dunn, S.D. (2008) Probing the
functional tolerance of the b subunit of Escherichia coli ATP synthase for sequence
manipulation through a chimera approach. Biochimica et Biophysica Acta 1777, 583-591.
Cipriano, D.J. and Dunn, S.D. (2008) Tethering polypeptides through bifunctional PEG crosslinking agents to probe protein function: Application to ATP Synthase. Proteins: Structure,
Function and Bioinformatics 73, 458-467.
Düser, M.G., Bi, Y., Zarrabi, N., Dunn, S.D., and Börsch, M. (2008) The proton-translocating
a subunit of F0F1-ATP synthase is allocated asymmetrically to the peripheral stalk. Journal of
Biological Chemistry 283(48), 33602-33610.
Sielaff, H., Rennekamp, H., Wächter, A., Xie, H., Hilbers, F., Feldbauer, K., Dunn, S.D.,
Engelbrecht, S., Junge, W. (2008) Domain compliance and elastic power transmission in
rotary F0F1-ATPase. Proceedings of the National Academy of Sciences USA 105, 1776017765.
Claggett, S.B., Plancher, M.O., Dunn, S.D., and Cain, B.D. (2009) The b subunits in the
peripheral stalk of F0F1-ATP synthase preferentially adopt an offset relationship. Journal of
Biological Chemistry 284, 16531-16540.
Düser, M.G., Zarrabi N., Cipriano, D.J., Ernst, S., Glick, G.D., Dunn S.D., and Börsch, M.
(2009) 36° step size of proton-driven c-ring rotation in F0F1-ATP synthase. EMBO Journal,
28(18), 2689-2696.
Biochemistry
Dr. Stanley Dunn – Selected
Publications
Gloor GB, Tyagi G, Abrassart DM, Kingston AJ, Fernandes AD, Dunn SD, Brandl CJ.
(2010) Functionally compensating coevolving positions are neither homoplasic nor conserved
in clades. Mol Biol Evol. 27(5), 1181-1191.
Xiao H, Briere LA, Dunn SD, Yada RY. (2010) Characterization of the monomer-dimer
equilibrium of recombinant histo-aspartic protease from Plasmodium falciparum. Mol Biochem
Parasitol. 173(1), 17-24.
Vassall KA, Stubbs HR, Primmer HA, Tong MS, Sullivan SM, Sobering R, Srinivasan S,
Briere LA, Dunn SD, Colón W, Meiering EM. (2011) Decreased stability and increased
formation of soluble aggregates by immature superoxide dismutase do not account for disease
severity in ALS. Proc Natl Acad Sci U S A. 108(6), 2210-2215.
Wächter A, Bi Y, Dunn SD, Cain BD, Sielaff H, Wintermann F, Engelbrecht S, Junge W.
(2011) Two rotary motors in F-ATP synthase are elastically coupled by a flexible rotor and a
stiff stator stalk. Proc Natl Acad Sci U S A. 108(10), 3924-3929.
Ernst S, Düser MG, Zarrabi N, Dunn SD, Börsch M. (2012) Elastic deformations of the rotary
double motor of single F(o)F(1)-ATP synthases detected in real time by Förster resonance
energy transfer. Biochim Biophys Acta. 2012 Apr 5.
Christie DA, Lemke CD, Elias IM, Chau LA, Kirchhof MG, Li B, Ball EH, Dunn SD, Hatch
GM, Madrenas J. (2011) Stomatin-like protein 2 binds cardiolipin and regulates mitochondrial
biogenesis and function. Mol Cell Biol. Sep;31(18):3845-56.
Biochemistry