J. Mol. Biol. (1997) 273, 740±751 Solution Structure of the Spectrin Repeat: a Left-handed Antiparallel Triple-helical Coiled-coil Jaime Pascual, Mark Pfuhl, Dirk Walther, Matti Saraste* and Michael Nilges European Molecular Biology Laboratory, Meyerhofstr. 1 69012 Heidelberg, Germany Cytoskeletal proteins belonging to the spectrin family have an elongated structure composed of repetitive units. The three-dimensional solution structure of the 16th repeat from chicken brain a-spectrin (R16) has been determined by NMR spectroscopy and distance geometry-simulated annealing calculations. We used a total of 1035 distance restraints, which included 719 NOE-based values obtained by applying the ambiguous restraints for iterative assignment (ARIA) method. In addition, we performed a direct re®nement against 1H-chemical shifts. The ®nal ensemble Ê from the mean for the of 20 structures shows an average RMSD of 1.52 A backbone atoms, excluding loops and N and C termini. R16 is made up of three antiparallel a-helices separated by two loops, and folds into a left-handed coiled-coil. The basic unit of spectrin is an antiparallel heterodimer composed of two homologous chains, b and a. These assemble a tetramer via a mechanism that relies on the completion of a single repeat by association of the partial repeats located at the C terminus of the b-chain (two helices) and at the N terminus of the a-chain (one helix). This tetramer is the assemblage able to cross-link actin ®laments. Model building by homology of the ``tetramerization'' repeat from human erythrocyte spectrin illuminates the possible role of point mutations which cause hemolytic anemias. # 1997 Academic Press Limited *Corresponding author Keywords: cell elasticity; membrane skeleton; hemolytic anemias; heteronuclear NMR Introduction Spectrin (also called fodrin) is a common component of cytoskeletal structures associated with the cell membrane in metazoan organisms (Shenk & Steele, 1993). Electron microscopy studies of spectrin samples reveal a ¯exible elongated molecule composed of two loosely intertwined strands Current addresses: M. Pfuhl, Department of Biochemistry and Molecular Biology, University College London, WC1E 6BT, UK; D. Walther, Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94143-0450, USA. Abbreviations used: R16, 16th repeat of chicken brain a-spectrin; 2D and 3D, two and three-dimensional; NOE, nuclear Overhauser effect; COSY, correlated spectroscopy; TOCSY, total correlation spectroscopy; TOWNY, TOCSY without NOESY; HSQC, heteronuclear single quantum coherence; T1, longitudinal relaxation time; T2, transverse relaxation time; RMSD, root-meansquare deviation; ARIA, ambiguous restraints for iterative assignment. 0022±2836/97/430740±12 $25.00/0/mb971344 that appear to be tightly associated at both ends, where the antiparallel or head-to-tail dimerization occurs (Shotton et al., 1979). Each strand is made of two homologous chains (b and a) which associate into tetramers through a head-to-head interaction (the C terminus of the b subunit with the N terminus of the a subunit) at the tetramerization site. The tetramer exposes actin-binding sites at its ends and is thus able to cross-link membrane-associated actin ®laments (Bennett & Gilligan, 1993). Although spectrin is present in most animal tissues, it has been most thoroughly studied in red cells. The human erythrocyte is characterized by a distinctive biconcave shape and remarkable elasticity. These properties are largely determined by the membrane skeleton, a ¯exible meshwork of proteins on the inner surface of the cell membrane which is mainly formed by non-covalent interactions between spectrin, F-actin and integral membrane proteins (Bennett & Gilligan, 1993). These interactions result in a relatively uniform # 1997 Academic Press Limited 741 Solution Structure of the Spectrin Repeat two-dimensional network which is primarily organized in the shape of hexagons. Actin and the associated proteins are located at the center and on the six corners of the hexagon and spectrin lies on the sides. This network is intimately coupled to the membrane at a limited number of sites via two molecular contacts between integral membrane proteins and spectrin. These attachments are provided by ankyrin which interacts with the band 3 protein and spectrin, and by protein 4.1 which interacts with glycophorin C and spectrin. A widely held model for red cell membrane elasticity is based on the assumption that spectrin exhibits entropic-spring behavior (Svoboda et al., 1992). Several other studies indicate that the elastic deformability of the erythrocyte depends on enthalpic events (Vertessy & Steck, 1989). According to both models, the membrane elasticity is mainly due to the properties of spectrin. However, the rigidity of the erythrocyte membrane also depends on integral membrane proteins that span the bilayer, mainly glycophorin C and band 3 and their oligomerization states (Feng & MacDonald, 1996), indicating that all components of the membrane skeleton contribute to the elasticity of the red cells. Most of the spectrin sequence is composed of a series of contiguous motifs called spectrin repeats that characterize all members of the spectrin family, namely spectrin, a-actinin, dystrophin, and utrophin (Hartwig, 1994). Additional structural features include an actin-binding domain made of two calponin homology (CH) domains (Djinovic et al., 1997), a plekstrin homology (PH) domain (Macias et al., 1994), a Src homology 3 (SH3) domain (Musacchio et al., 1992), and a calmodulinlike domain with four EF-hands (Trave et al., 1995). The ability of the spectrin molecule to contract and expand has been attributed to the modular structure made of repeats, initially identi®ed by partial peptide sequences (Speicher & Marchesi, 1984). The global molecular architecture was later revealed by complete sequencing of cDNAs for the a and b subunits from several species. The analysis of the conformational phase of the repeat using recombinant fragments of different lengths has established the boundaries for properly folded repeats (Winograd et al., 1991). Despite low sequence homology, theoretical models have proposed that the repeat folds into a left-handed coiled-coil made of three antiparallel a-helices (A, B, and C) separated by two short loops (AB and BC; Parry et al., 1992). However, the crystal structure of the dimeric 13th repeat of Drosophila a-spectrin (PDB ID: 2SPC) has showed an intermolecular triple helical bundle where helices A and B from one molecule pack against helix C0 of the other molecule in the dimer and the proposed BC loop appears in an a-helical conformation as part of a continuous helix B-C(Yan et al., 1993). In the intact spectrin molecule, both termini must point in opposite directions. The termini in the crystal structure are oriented in the same direction which is incompatible with the global arrangement of repeats inside spectrin. The conformation found in the crystal is likely to be an artifact caused by the dimerization process that this particular repeat suffers in solution at room temperature when it is recombinantly produced as a GST-fusion (Ralston et al., 1996). From the X-ray data (Yan et al., 1993), a model for the monomer was proposed that agrees with the secondary but not with the tertiary structure proposed by modeling (Parry et al., 1992), i.e. it proposes the existence of the BC loop but suggests that the repeat is a helical bundle rather than a coiled-coil. The importance of the spectrin repeat to the elastic properties of the membrane skeleton and to the structural and functional integrity of the normal red cell is demonstrated by the fact that it is a target for mutations which cause hemolytic anemias, such as some cases of hereditary elliptocytosis, pyropoikilocytosis and spherocytosis characterized by abnormally shaped erythrocytes (Davies & Lux, 1989; Winkelmann & Forget, 1993; Hassoun & Palek, 1996). Mutations associated with these anemias occur in helical regions of the spectrin repeats, and frequently disrupt the spectrin tetramer formation (Tse et al., 1990). Impairment of the tetramer formation alters the membrane skeleton structure and leads to reduced mechanical stability of the membrane. Mutations involve nucleotide substitutions, exon skipping, alternative splice-site selection, short deletions and frameshifts (Hassoun et al., 1996). In earlier studies (MacDonald et al., 1994; Pascual et al., 1996), we showed that the 16th repeat from chicken brain a-spectrin (R16; Wasenius et al., 1989) in solution folds into a monomeric helical structure composed of three helices separated by two loops at room temperature (298 K) and at the 1 mM concentration required for NMR. Recently, it has been demonstrated that the isolated repeat 1 from human erythrocyte a-spectrin (DeSilva et al., 1997) and repeat 2 from human dystrophin (Calvert et al., 1996) are also monomeric. Here, we report the complete assignment of the 15N, 1H and 13C chemical shifts of R16 and determination of its three-dimensional structure in solution, providing the ®rst experimental threedimensional structure of a spectrin repeat in native conformation. Results Resonance assignment The recombinantly expressed R16 domain consists of 110 residues spanning from Ala1763 to Glu1872 of chicken brain a-spectrin (SwissProt ID: SPCN_CHICK). Backbone and aromatic side-chain assignment has already been reported (Pascual et al., 1996). Con®rmation of the aromatic resonances was accomplished by analyzing a 2D 1H-13C HSQC spectrum (Stonehouse et al., 1994) where the 13 C carrier frequency was placed at 126 ppm. Due 742 Solution Structure of the Spectrin Repeat Table 1. Experimental restraints and structural statistics for the best 20 structures Experimental restraints Total number of restraints NOE restraints unambiguous intraresidue sequential medium-range long-range ambiguous dihedral angle restraints hydrogen bond restraints Deviations from experimental restraints: RMSD: Ê) of unambiguous NOE restraints (A Ê) of ambiguous NOE restraints A of dihedral angle restraints ( ) Ê) of hydrogen bond restraints (A of 1H chemical shifts (ppm) Structural statistics for the ensemble: Quality indices: overall G value (PROCHECK) what-check score (WHATIF) combined z-score (PROSA) RMSD from the average structure: all residues (10-107) Ê) backbone (N, Ca, C) (A Ê) heavy atoms (A residues in a-helical conformation Ê) backbone (N, Ca, C) (A Ê) heavy atoms (A 1035 719 602 157 75 324 46 117 170 146 0.025 0.015 0.287 0.003 0.241 0.003 0.005 0.019 0.001 0.012 0.15 0.47 ÿ5.44 0.03 0.18 0.52 1.83 2.71 0.12 0.19 1.52 2.44 0.15 0.20 to the high a-helical content, the spectral dispersion of the Ca and Ha chemical shifts was poor, precluding the extension of the assignment to the side-chains. Taking advantage of the 1H-13C-13C-1H correlation, we could obtain side-chain assignments, primarily from an analysis of the 3D HCCH-COSY and TOCSY spectra. We used the 13 a C and 1Ha chemical shifts as a starting point for the validation of the previous sequential backbone assignment. In order to help the assignment, information from the expected 13C chemical shift ranges and 1H spin system topology was used as an initial criterium. Further con®rmation was obtained by checking the resonances in the 3D 13C HSQCTOWNY spectrum. A list containing the 15N, 1H, and 13C chemical shifts assigned and referenced according to Wishart et al. (1995) is available as supplementary material. Experimental restraints Table 1 shows the experimental restraints used to calculate the structure. Due to severe overlap, we could manually identify only 355 unambiguous distance restraints between protons. Application of the ``ambiguous restraints for iterative assignment'' (ARIA) method (Nilges et al., 1997) increased the number of NOE-based distance restraints. As described in Materials and Methods, after eight iterations a total of 719 distance restraints could be obtained, where 602 were unambiguous and 117 ambiguous. The former contained 157 intraresidue, 75 sequential, 324 medium-range and 46 long- Figure 1. Superposition of the Ca trace for the ®nal ensemble of R16 structures (from His10 to Gln107). The triangles point towards the C terminus of each of the helices. range restraints. The elongated shape of the molecule results in a lower number of long-range NOE contacts in comparison to a globular protein of similar size where the closer proximity of different segments allows more interactions. The ambiguous restraints contained 70 with two, 36 with three, seven with four, three with ®ve and one with seven assignment possibilities. Inside this group of ambiguous restraints, two long-range restraints were found, the ®rst with two assignment possibilities and the second with three. Measurement of the 3JHN-Ha coupling constant for R16 (Pascual et al., 1996) allowed the constraint of 85 f angles to ÿ60(20) . Since the pattern of sequential and medium-range NOEs and the consensus chemical shift index for these 85 residues indicate a helical conformation, their c angles were 743 Solution Structure of the Spectrin Repeat Figure 2. View of the backbone average structure of R16 (from His10 to Gln107). From the N to the C terminus, helix A is colored green, the AB loop red, helix B yellow, the BC turn red, and helix C cyan. Some of the side-chains of residues implicated in interhelical contacts are shown in white and labeled according to the one letter code for amino acid residues and in parenthesis according to the helices nomenclature. also constrained to ÿ40(20) . In order to de®ne the helices better, we added 73 hydrogen bonds canonical of a-helical conformation along the main chain as two distance restraints (2.50 < dOiÊ Ê ). NHi 4 < 2.70 A and 2.5 < dOi-Ni 4 < 3.70 A These were assigned to the residues in the central part of the helices. Proline residue 61 (the sequence is shown in Figure 6) and residues around it were left unrestrained. Structure analysis The termini are highly disordered, as indicated by their 15N-T1, T2 and 15N-1H heteronuclear NOE values (Pascual et al., 1996), and therefore a sensible superposition cannot be made with the full sequence. Consequently, calculation of an average structure and analysis of the ensemble was carried out with structures spanning from His10 to Gln107. Table 1 shows the structural statistics of the ensemble. The analysis shows that the structures barely violate the empirical restraints and only slightly deviate from ideal geometry having a small force ®eld total energy. None of the strucÊ tures showed NOE violations bigger than 0.5 A nor dihedral angle violations bigger than 5 . The RMSD value for the 1H chemical shifts is indicative of a generally correct assignment. The average RMSD from the mean structure for the backbone atoms (N, Ca, and C) of residues in helical conforÊ , and 2.44 A Ê for all heavy atoms. mation is 1.52 A Regarding the quality indices, the overall G value (Laskowski et al., 1996) should be above ÿ0.5, the ``what-check'' score value (Vriend & Sander, 1993) for a good structure is expected to be above ÿ0.5 and the combined z-score (Sippl, 1993) varies with the sequence length and for a 100-residue protein is expected to be ÿ8.0 2.0. As shown in Table 1, these criteria are met by the R16 structure. The ensemble is shown in Figure 1, and the average structure with key residues implicated in interhelical contacts in Figure 2. The Ramachandran map (Figure 3) for all 20 structures shows that more than 90% of the residues appear in the allowed regions. Just a few loop residues in some of the structures have f/c values in disallowed regions. A plot showing the distribution of the number of NOE-restraints per residue and backbone atoms RMSD from the average per residue is shown in Figure 4a and b. Figure 4c shows the relative solvent accessibility. This plot reveals that the most buried residues match with the a and d positions of the heptad pattern (McLachlan & Stewart, 1975), shown in Figure 6, characteristic of coiled-coils (Crick, 1953; Lupas, 1996, 1997). An improvement in the ®t between the observed and calculated 1H chemical shifts when comparing ensembles calculated without and with 1H chemical shift re®nement can be observed in Figure. 5a and b. The analysis of the ®nal ensemble by PROCHECK-NMR indicates that the overall structural Ê rescharacteristics are equivalent to a typical 2.5 A olution crystal structure. Description of the R16 fold Analysis of the secondary structure of the average structure using the program DSSP (Kabsch & Sander, 1983) shows that R16 consists of three a-helices separated by two loops. The ®rst helix, A, spans from Gln11 (A6, according to the nomenclature of Yan et al. (1993); see Figure 6) to Ser32 (A27); the second, B, begins with Val42 (B1) and ends with Asp76 (B35) accommodating the transPro61 (B20); the last one, C, extends from Lys81 (C1) to Gly106 (C26). Helices A and C have seven turns and are smoothly bent throughout their 744 Solution Structure of the Spectrin Repeat Figure 3. Ramachandran plot of the f (Phi) and (Psi) torsion angles for all 20 structures in the ensemble generated using PROCHECK-NMR. Each square represents the f/c values for a residue from the structure of the ensemble indicated by the number inside the square. Small triangles represent Gly residues. A, B, and L de®ne the most favored regions; a, b, l, and p de®ne the allowed regions; a, b, l, and p de®ne the generously allowed regions. Squares that appear on the latter region are topped by the residue name and number. Notice that all of them belong to loop regions and none appears on the disallowed region systematically. length. Helix B is the longest with ten turns. It has a kink (y 21.8 ; Barlow & Thornton, 1988) which is caused by Pro61. A loop, from Glu33 to Thr40 connects the ®rst two helices, whereas a tight turn Ê ) from Asn77 to Gly80 (Cai to Cai 3 distance 7.0 A makes the connection between helices B and C. Most of the contacts at the interface between the helices are made by hydrophobic side-chains, which are highly conserved in the spectrin repeats and occupy the positions a and d of the heptad pattern of coiled-coils. However, ionic interactions between charged side-chains of variable residues mainly at g and e positions also appear to stabilize the structure. A total of 46 interhelical NOEs de®ne several contact regions and allow the mapping of the interior of the structure (Figure 2). At the top, there are interactions between the side-chains of Phe12 (A7), the variable Gly70 (B29) and Ile84 (C4); below, contacts appear between Met16 (A11), Val66 (B25) and Phe91 (C11). In the middle, the almost invariant Trp22 (A17) in the g position interacts with the variable His59 (B18) and with Trp95 (C15). Near the bottom, contacts involving Val30 (A25), Leu52 (B11) and Ala102 (C22) can be observed. Finally, an electrostatic rather than a hydrophobic interaction occurs at the bottom Solution Structure of the Spectrin Repeat 745 Figure 5. Plots of the difference between the average observed and calculated 1H chemical shifts versus the sequence number (from His10 to Gln107). In a, an ensemble of ten structures coming from the last ARIA iterative calculation without 1H chemical shift re®nement was used. In b, the ®nal 20 structures re®ned in vacuum and against 1H chemical shifts were the input for the calculation. Figure 4. Plot showing the distribution of the number of NOE restraints (a), backbone atoms RMSD from the average (b) and the relative solvent accessible area (c) per R16 residue (from His10 to Gln107). between the variable Glu33 (A28), the conserved Asp34 (A29) and two highly conserved positively charged residues, namely Lys48 (B7) and Arg105 (C25) both in g positions. Analysis of the tertiary structure of the average structure of R16 was performed using the program HELIX (Walther et al., 1996). Table 2 shows the geometrical and packing parameters measured for each pair of helices. Notice that the helices A/B and B/C are antiparallel while helices A/C are parallel. The column gives the crossing angle value for each pair of helices. Depending on the orientation of the helices in the pair (parallel or antiparallel), the crossing angle varies by 180 . Regarding the helical packing, the ratio column presents the percentage of residues in close contact (all column) that pack in ``knobs into holes'' manner (153 column). Measurement of these parameters shows that R16 folds into a left-handed antiparallel triple helical coiled-coil with crossing angles for the parallel (A/C) and antiparallel (A/B and B/C) helices of 30.8 , ÿ144.7 and ÿ162.3 , Ê . On respectively, and an average pitch of 178.6 A average, 52% of the residues implied in R16 interhelical contacts show the classical ``knobs into holes'' type of packing characteristic of coiled-coils. A comparison of the same parameters with the crystal structure of the Drosophila repeat (2SPC) and with coil-Ser (Lovejoy et al., 1993; PDB ID: 1COS), a synthetic trimer composed of three a-helices folded into an antiparallel coiled-coil, is also shown in Table 2. Analysis of the R16 fold against the PDB using the program DALI (Holm & 746 Solution Structure of the Spectrin Repeat Figure 6. Alignment of spectrin repeats. The numbering corresponds to the fragment used in the solution structure. The sequences aligned are the 16th repeat of chicken brain a-spectrin (a16) solved by NMR, the 13th repeat of Drosophila a-spectrin (a13) solved by X-ray, and the ``tetramerization'' repeat made of the partial repeats of human erythrocyte b/a-spectrin (b17/a0). The consensus line was obtained from a complete alignment of all repeats from human erythrocyte spectrin. The heptad pattern as well as the helices nomenclature are shown. The multiple sequence alignment was made using the program CLUSTALW (Thompson et al., 1994). Sander, 1993) reported as the highest score (z 6.1) the match with the avian farnesyl diphosphate synthase (PDB ID: 1FPS). Both structures Ê for 70% of the superimpose with a RMSD of 2.8 A a C atoms of the repeat including fragments from all three helices. Discussion The spectrin repeat folds into a triple-helical coiled-coil As previously reported (Pascual et al., 1996), R16 folds into a monomeric triple-helical structure. The fold of R16 is composed of three long helices (A, B, C) separated by a loop (AB) and a turn (BC). As depicted in Figures 1 and 4b, both the AB loop and the BC turn correspond to the more disordered areas. However, the close correspondence between the positional disorder and their mobile behavior observed via the relaxation measurements suggests that the disorder is not due to the scarcity of restraints for those residues but re¯ects real mobility in solution. Moreover, the AB loop shows a higher degree of disorder than the BC turn. This is in agreement with the relaxation parameters of the repeat where a shorter value for 15N-T1, longer for T2 and a smaller 15N-1H heteronuclear NOE are observed for the AB loop residues compared to those of the BC turn (Pascual et al., 1996). Regarding the helices, a high proportion of the residues implicated in interhelical contacts pack their sidechains following the well-de®ned ``knobs into holes'' arrangement characteristic of a coiled-coil. The crossing angle and the pitch values corrobo- rate the coiling of the helices (Table 2). The transPro61 (f ÿ66.4, c ÿ29.6) is accommodated in the middle of helix B by a kink. Other repeats also show a proline residue at the same helical position (B20; Pascual et al., 1997), indicating that a single proline residue can be present inside a helix without preventing its folding (Barlow & Thornton, 1988). Superposition of the backbone atoms of the helical residues between the average solution structure (R16) and the monomeric model from the dimeric Ê. X-ray structure (2SPC) shows a RMSD of 2.1 A These repeats have diverged early in evolution (Pascual et al., 1997) and have only 22% identical residues at equivalent positions (Figure 6). Of these 23 identical residues, 13 are highly conserved among all spectrin repeats. Most of them are hydrophobic residues that occupy the a and d heptad positions (A4, B1, B4, B8, B22, B32, C15, C18, and C29) and show low dispersion of their w1 angle in the ensemble of NMR structures. However, these side-chains do not superimpose well with those from the crystal model, showing some of them to have distinct gauche/trans w1 rotamers. Moreover, the aromatic cluster made by A17/B18/ C15 shows a different disposition of the rings (Figure 7). Contrasting their tertiary structure (Table 2), different values are obtained for the crossing angle, pitch and ratio of residues packed according to the ``knobs into holes'' arrangement. For comparison, Table 2 includes the corresponding values for a synthetic antiparallel triple-helical coiled-coil (1COS) with almost identical helical length. Notice that 1COS should provide the ideal values for an Table 2. Helical geometry and packing parameters of R16, 2SPC, and 1COS Molecule R16 2SPC 1COS a Helix 1 A A B A A B A A B Helices Helix 2 B C C B C0 a C0 a B C C ( ) Geometry Ê) Pitch (A ÿ144.7 30.8 ÿ162.3 ÿ157.0 12.5 ÿ160.8 ÿ157.7 32.7 ÿ159.3 This helix comes from the second molecule in the crystal dimer. 198.4 157.2 180.2 251.2 206.1 308.8 197.2 167.6 192.8 153 5 7 7 9 12 8 14 17 15 Packing All 10 12 15 23 26 26 25 24 19 Ratio (%) 50 58 47 39 46 31 56 71 79 747 Solution Structure of the Spectrin Repeat dues with opposite charge are not observed in the sequence alignment of the repeats. Molecular explanation for hemolytic anemias Figure 7. Superposition between the X-ray monomeric model (depicted in red) and the average solution structure (depicted in green) of the conserved hydrophobic side-chains A17, B18, and C15 in the core of the repeat. These side-chains show a low dispersion of their w1 angles in the ensemble of solution structures. antiparallel triple-helical coiled-coil since it only contains leucine residues at the a and d positions. Since R16 shows a higher crossing angle, lower pitch and higher ratio of residues packed in ``knobs into holes'' as compared to 2SPC, we conclude that the repeat folds into a coiled-coil in solution whereas the crystal structure of the repeat is better described as a bundle. These discrepancies could re¯ect the possibility that the crystal structure resembles more the ``tetramerization'' repeat (a very special repeat constituted by intermolecular interactions of the C-terminal helices A and B of b-spectrin and the N-terminal helix C of a-spectrin) rather than a typical internal repeat exempli®ed by the NMR structure. Antiparallel interactions between repeats within the dimer Since the functional unit of spectrin is a dimer and that of dystrophin is a monomer, differences in the pattern of conservation of residues between repeats in both proteins could explain that differential property (Winder et al., 1995). There are only two highly conserved and exposed (either in b, c or f positions) residues within the helices of the spectrin repeats that are not conserved in the dystrophin repeats. These are Asp18 (A13) and Glu25 (A20) which are both in consecutive c heptad positions of the helix A (Figure 6). Conservation of a residue or a physical property at a speci®c position or area could indicate an important structural and/or functional role. In this case, however, a possible involvement of these charges in functions like repeat-repeat interactions in the antiparallel dimer is unclear since conserved and exposed resi- Several point mutations in the repeats from human erythrocyte spectrin have been related to a subset of hemolytic anemias such as hereditary elliptocytosis, pyropoikilocytosis and spherocytosis. Most of those mutations have been mapped inside the ``tetramerization'' repeat. We have built a model by homology of the tetramerization repeat using the R16 structure as a template and employing the WHATIF program (Vriend, 1990) to interpret the puzzling fact that a single point mutation leads to the disease. This repeat is built by interactions between two molecules, and it is therefore likely to be very sensitive to mutations that destabilize the interhelical packing. One of the mutations appears in position A17 where the highly conserved Trp is mutated to Arg (Parquet et al., 1994). This conserved Trp has been described as one of the key residues for the folding of the repeat where a conservative mutation to Phe already causes a signi®cant decrease in its global stability (Pantazatos & MacDonald, 1997). Apart from this, the model indicates that an Arg residue in this position would cause a charge repulsion with the Arg in position B21. This could prevent the proper folding of the repeat. An interesting mutation is caused by the replacement of Ala with Pro in position B10 (Tse et al., 1990). The presence of a single Pro residue is not rare in helix B of the spectrin repeats, especially in position B20. In fact, the tetramerization repeat contains a Pro residue in position B28. The presence of a second Pro in the same helix most likely causes another kink that disrupts the proper packing. An additional peculiar feature of this repeat is the presence of ®ve Arg residues in the helix C for which mutations have been found (C7, C8, C14, C21, and C25; Palek & Sahr, 1992; Winkelmann & Forget, 1993). For instance, the substitution of Arg with Leu in position C8 causes the loss of an interhelical salt bridge with the Glu at B26 according to our model. The same is applicable to the Arg to Ser mutation at C25 which may lead to the breakage of another highly conserved interhelical ionic interaction with the Asp at A29 (Figure 8). Elastic properties of spectrin It has been proposed (Bloch & Pumplin, 1992) that the residues connecting two sequential repeats could act as a hinge region being largely responsible for the elastic properties of spectrin. However, this region is rather short, in general comprising only two residues which are rarely Gly or Pro. Thus, it is possible that there is a continuous C-A helix between the repeats, although the heptad pattern is lost between helix C of one repeat and helix A of the next one. The likely residues implicated in inter-repeat contacts are conserved, hydrophobic 748 Solution Structure of the Spectrin Repeat Figure 8. Model of the arrangement of the conserved side-chains A29, B7, and C25 of the ``tetramerization'' repeat colored in green interacting via an intermolecular salt bridge as well as a model for the effect of the Arg to Ser (colored in red) mutation in C25 that prevents the tetramerization. The inset the backbone of the model for the tetramerization repeat; helices A and B from the b-chain are in white and helix C from the a-chain is in cyan. Notice the absence of the BC loop. Each triangle points towards the C terminus of its respective helix. and exposed like A2 (His7 in R16) that occupies the heptad postition f, the ®rst (Tyr35) and the ®fth (Leu39) residue in the AB loop and the ®fth (Thr78) residue in the BC turn (Figure 6). Unfortunately, these residues show the highest disorder both in the crystal and solution structures of single repeats. Consequently, further insights into the molecular mechanism of spectrin elasticity will become available when a re®ned structure of a double repeat has been determined, and the structure of the proposed hinge region and the interrepeat contacts emerge. Materials and methods NMR spectroscopy The expression, puri®cation and 15N/13C labeling of R16 was carried out according to Pascual et al. (1996). The NMR sample contained 1 mM of uniformly 15 N/13C-labeled R16 dissolved in 90% H2O/10% 2H2O, 10 mM potassium phosphate (pH 6.0). The NMR spectra were recorded at 308 K using Bruker DMX 500/600 MHz spectrometers. Water suppression was accomplished using WATERGATE (Piotto et al., 1992) or coherence selection by pulsed ®eld gradients combined with sensitivity enhancement (Kay et al., 1992). The experiments acquired for the backbone and aromatic side chains assignment have already been described (Pascual et al., 1996). In order to assign the side-chains 3D 13C-edited HCCH-COSY (Ikura et al., 1991) and HCCH-TOCSY (Bax et al., 1990) spectra were obtained, using 20 ms as TOCSY mixing time, as well as a 3D 13C HSQC-TOWNY modi®ed from a 13C HSQC-NOESY according to Majumdar & Zuiderweg (1993) by introducing the TOWNY scheme (Kadkhodaei et al., 1993) with a mixing time of 60 ms. For structure calculation purpose, two 3D NOESY-type spectra, namely 15N NOESY-HSQC (Sklenar et al., 1993) and 13C HSQC-NOESY (Majumdar & Zuiderweg, 1993), were acquired with mixing times of 70 ms. All 3D experiments were recorded in the phasesensitive mode using the States-TPPI method (Marion et al., 1989). The NMR spectra were processed and analyzed on Silicon Graphics workstations using the programs AZARA (Boucher, 1994) and AURELIA (Neidig et al., 1995). Linear prediction was applied to the indirectly detected dimensions. The residual water signal in some of the 3D spectra was suppressed by means of the Karhunen-Loeve transformation (Mitschang et al., 1991). The ®nal size of the 3D data matrices was 1024 512 256 real points. Structure calculation Structure re®nement was achieved employing the ambiguous restraints for iterative assignment (ARIA) methodology (Nilges et al., 1997). ARIA performs an automatic assignment of NOESY spectra peaks based on the chemical shifts list and its compatibility with the interproton distances measured in the initial structures. Merging of the manually assigned NOE restraints with the automatically assigned NOE restraints is done in order to calculate better de®ned structures that will be used in the next iteration. The structure re®nement is obtained by molecular dynamics using version 3.851 of X-PLOR (BruÈnger, 1992) adapted to interpret ambiguous distance restraints (Nilges, 1995) and applying speci®c simulated annealing protocols as described by Nilges et al. (1997). Assignment of distance restraints implying methylene and isopropyl group resonances is done using the ¯oating chirality approach (Weber et al., 1988; Folmer et al., 1997). In our case, three data sets were used. The ®rst one consisted of 355 NOE-based unambiguous distance restraints derived from manual assignment of different NOESY spectra. The second and the third data sets were obtained from the 3D 15N NOESY-HSQC and 13C HSQC-NOESY spectra using the automatic peak-picking routine of AURELIA. A manual cleaning for obvious artifacts and solvent residual signal of the peak-picked lists was performed. Automatic assignment of the picked peaks was obtained using a frequency window tolerance around their chemical shift values of 0.02 ppm in the 1 H acquisition dimension, 0.1 ppm in the 1H indirect dimension and 0.2 ppm in the heteronuclear one. Conversion of peak volumes into distance restraints was accomplished through the calibration procedure described by Nilges et al. (1997). The initial structures used for the ARIA re®nement were the seven lower in energy from 500 structures calculated employing the distance geometry program DIANA (Guntert et al., 1991) 749 Solution Structure of the Spectrin Repeat applying the REDAC strategy (Guntert & Wuthrich, 1991). They were obtained using 355 NOE-based unambiguous distance restraints manually assigned including 32 long-range NOEs; cross-peak intensities were classi®ed as strong, medium or weak using contour levels for calibration, and the upper limits for the distance Ê , 4.0 A Ê and 5.0 A Ê , respectively. restraints were set to 3.0 A Eight ARIA iterations were run modifying the assignment parameter (p) from 0.999 to 0.8, the violation Ê to 0.0 A Ê and the violation ratio threshold (Tv) from 2.0 A (Nv) from 0.5 to 0.75. In each iteration ten structures were re®ned although just the seven structures with lower energy were used for assignment purpose. At the ®nal iteration, a total of 719 distance restraints based on NOEs were obtained, where 602 were unambiguous and 117 ambiguous. Further re®nement to detect ionic interactions on the surface of the molecule was accomplished by the simulation of non-bonded interactions in vacuum using all 719 NOE-derived distance restraints and an X-PLOR energy function that included an electrostatic potential term and a 1H-chemical shift pseudopotential (Kuszewski et al., 1995). Starting with the best 40 structures from the initial distance geometry calculation, 40 new structures were calculated in vacuum. The 20 structures with lower energy were selected for structure analysis. All 20 structures were superimposed to wellde®ned regions (from His10 to Gln107) and an average structure spanning those residues was calculated. A quality analysis of the ®nal superimposed ensemble was assessed using the programs PROCHECK-NMR (Laskowski et al., 1996), WHATIF (Vriend & Sander, 1993) and PROSA (Sippl, 1993). The coordinates of the ensemble of 20 structures (PDB ID: 1AJ3) plus a list with the experimental NMR restraints (PDB ID: R1AJ3MR) are available at the Brookhaven Protein Data Bank. Helical geometry and packing analysis The de®nitions and sign conventions of helical geometry and packing parameters were adapted from those of Walther et al. (1996). The measurements were obtained using the program HELIX (Walther et al., 1996) and performed for each pair of helices. 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