IMMUNOLOGY MEDICAL MICROBIOLOGY ELSEVIER FEMS Immunology and Medical Microbiology AND 13 ( 1996) I47- 154 Karyotyping by PFGE of clinical isolates of Sporothrix schenckii Takeshi Tateishi a-* , Somay Yamagata Murayama b, Fujio Otsuka a, Hideyo Y amaguchi b~c Received 30 August 1995: revised 26 October 1995; accepted 27 October 1995 Abstract From October1991to December1992we hadeight patientswith sporotrichosis at TsukubaUniversity Hospitalin Japan. With 8 strainsisolated from thesepatients,PFGE(pulsed-fieldgel electrophoresis) analyseswere carriedout to examine whetherthe karyotypeof S. schenckiiis distinguished by our methodandwhetherthismolecularapproachis a usefulmeans of biotypingof S. schenckiistrains.Chromosomes wereseparated by contour-clamped homogeneous electricfield (CHEF) gel electrophoresis. The strainshadsix to eight chromosomes and a total genomesizewasapprox.28 Mbp. Although these karyotypesof all the isolateslookedcloselysimilarto eachother, they weregroupedinto threetypes. Key~rords: Sporothrh schewkii: Sporotrichosis: Pulsed-field gel electrophoresia: 1. Introduction Sporotrichosis is a subacute or chronic disease causedby Spomthrix schenckii, a pathogenic fungus classified as a member of the deuteromycetes.Infection is usually limited to the skin, subcutaneous tissue. and lymphatic glands. In most caseslesions are indolent nodules that often suppurate, ulcerate, and drain [l]. Sporotrichosis is worldwide in distribution. In Japan approximately 150 casesare recorded every year. There is regional difference in incidence of this fungal infection; it is particularly high in the Kanto district, which includes Ibaraki prefecture, and in the Kyushu district (Fig. 1) [2]. _ Corresponding author. Tel.: + 81 (298) (298) 53-32 17: e-mail: au I [email protected] 092%X243/96/$15.00 0 1996 Federation SSDI 092X-8244(95)00097-6 53.3128: of European Fax: +81 Microbiological Karyotype S. schenckii is dimorphic; at room temperature it grows as a mycelial form on Sabouraud’s glucose agar or other conventional media, while in infected tissueyeast form cells are predominant. Such yeastform cells of this fungus also develop in cultures grown at 35-37°C on blood agar containing cysteine or in brain heart infusion broth. In nature S. schenckii exists as a saprophyte and is found in soil and various plant materials [3]. Ajello and Kaplan [4] described a new variety of S. schenckii termed S. schenckii var. luriei isolated from a patient with sporotrichosis,and Mackinnon et al. [5] and Dixon et al. [6] reported environmental isolates which were closely similar to S. schenckii in mycological properties. In recent years, molecular biological techniques have been applied to epidemiological and taxonomic study of several pathogenic fungi, particularly CanSocieties. All rights reserved 148 [lo]. Karyotyping has been also done of a variety of pathogenic fungi, including C. al&cans, C. glabrutu [ 1 I], C. tropicalis [ 121, Cyptococcus neoformans [ 131, Aspergillus nidulans [ 141, A. niger [I 51, Malassezia pachydermatis [ 161 and Coccidioides immitis [17]. However, there is no information available on the karyotype of S. schenckii. In this paper. we analyzed the electrophoretic karyotype of S. schenckii isolated from patients with sporotrichosis in the Tsukuba University Hospital, in order to know, firstly, if the electrophoretic karyotype is really distinguished by our PFGE method, secondly, if this molecular method is useful in strain typing of S. schenckii. 2. Materials and methods 2.1. Strains 0 20klll Fig. I. Geographic distribution of aporotrichosis patients from whom testing strains of S. schenckii were isolated. Symbol: 0, habitat of each patient. didu albicans. Molecular biological methods have been used to explore the phylogenic relationship of S. schenckii with some other fungi. as well as its strain typing. Berbee and Taylor demonstrated the phylogenic relationship between S. schenckii and Ophiostoma stenoceras by comparing the DNA sequence of 18s ribosomal RNA gene (18s rDNA) [7]. Based on restriction profiles (restriction fragment length polymorphisms (RFLPs)) of mitochondrial DNA, Suzuki et al. grouped S. schenckii into 11 types [8]. RFLP analysis of whole cell DNA was carried out by Cooper et al. with clinical and environmental isolates of Sporothrix spp. collected in the United States [9]. More recently, pulsed-field gel electrophoresis (PFGE) has become useful for separating large DNA molecules over IO kbp can be favorably resolved [lo]. The size and number of chromosomal DNAs can be separated by PFGE to specify the karyotype. Karyotyping has been successfully done with various organisms including mammals, plants and bacteria All strains of S. schenckii used in this study were isolated from patients diagnosed with sporotrichosis and were identified on the basis of cultural and morphological properties at the Department of Dermatology, University of Tsukuba, School of Medicine between October 199 1 and December 1992. The strains isolated from patients 1. 2, 3, 4, 5, 6, 7 and 8 were designated as strain nos. 1-8, respectively. 2.2. Preparation of intact chromosomul DNA Yeast-form cells of S. schenckii were grown at 33.5-345°C in brain heart infusion broth for 7 days with gentle shaking, harvested by centrifugation ( 15,000 X g ) and washed twice with Tris-EDTA (TE) buffer (10 mM Tris-HCl, 50 mM EDTA, pH 7.6). We used two methods for preparation of intact chromosomal DNA: an agarose-spheroplast method and a liquid-spheroplast method. In the former, washed cells were suspended in TE buffer containing 1 mg/ml of Zymolyase 20T (Seikagaku Co., Tokyo), mixed with low melting point agarose (Bio-Rad) to a final concentration of 0.75%, and the cell concentration adjusted to 5 X 10’ cells/ml. The mixture was poured into plug molds and cooled at 4°C for 15 min to solidify the agarose. The agarose plugs were pushed into LET buffer (500 mM EDTA, IO mM Tris-HCl, 1% 2-mercaptoethanol. pH 7.6) and incu- bated at 37°C for 18 h. Then they were transferred to ESP solution (500 mM EDTA, 1% sodium lauroyl sarcosinate, 1 mg/ml Proteinase K) and incubated at 50°C for 48 h. After the incubation, the agarose plugs were washed at 50°C twice with TE buffer containing 1 mM phenylmethylsulfonyl fluoride (PMSF) and another two times with PMSF-free TE buffer, then stored at 4°C until use. In the liquid-spheroplast method, washed cells were suspended in 1 ml of lysis solution (1 M KCl, 10 mM Tris-HCl. pH 7.51, to which 50 ~1 of /3-mercaptoethanol and Zymolyase 20T (1 mg/ml cell solution) were added and were incubated at 37°C for 3 h to induce spheroplasts. The resultant spheroplasts were harvested by centrifugation (10,000 X g), resuspended in 0.67 ml of lysis solution, and mixed with 0.37 ml of 2% low melting point agarose containing 50 mM EDTA. Final concentrations of agarose and fungal cells were the same as those using the agarose-spheroplast method. The mixture of agarose and fungal cells was solidified at 4°C for 15 min in a plug mold. The agarose plugs were incubated in ESP solution and the subsequently procedure followed that in the agarose-spheroplast method. 2.3. Electrophoresis CHEF (contour-clamped homogeneous electric field gel electrophoresis) was performed using the CHEF DRII, DRIB or Mapper (Bio-Rad) apparatus. DNAs of Saccharomyces cerecisiae YNN295 strain (Bio-Rad) and Schizosaccharomyces pombe strain 972h- (Bio-Rad) were used as the size markers. The composition of buffer, concentration of agarose (pulsed-field grade agarose, Bio-Rad), voltage, switch time, run time and angle of electrophoresis were selected according to the size of DNA, as described in the legends to figures. After a run, the DNA was visualized with ethidium bromide and photographed under ultraviolet light using instant film (FP3000B, Fuji). 3. Results 3.1. Clinical tien ts characteristics of sporotrichosis pa- From November 1991 to December 1992 we isolated each S. schenckii strain from 8 patients with Ml2345678 +- 460 kbp Fig. 2. CHEF electrophoresis of 8 S. schenckii strains. The electrophoresis was performed by CHEF DRII apparatus using the following conditions: I .O% agarose. included angle of 120” and switch time of 60 s for I5 h and then 90 s for 9 h at 14°C in 0.5 X TBE buffer (40 mM Tris, 45 mM borate. I .O mM EDTA. pH 8.3). Lane M: S. cere, isine YNN795 strain. 150 Ml2345678 Fig. 3. CHEF electrophoresis of 8 S. s&w&i strains. The electrophoresis was performed V/cm, 120” included angle. 120 s switch interval. 24 h run time followed by 240 s switch 14°C. Lane M: S. cerec~i.siw YNN295 strain. MlM21 2345 by CHEF DRIII apparatus, 1.0% agarose, 2 interval. 24 h run time in 0.5 X TBE buffer at 6 78 c- 3900 kbp + 3400 kbp t-3000 kbp Fig. 3. CHEF electrophoresis of 8 S. schenckii strains, The electrophoresis was performed by CHEF DRIII apparatus, 0.8% agarose, 2 V/cm, 106” included angle, 500 s switch interval, 36 h run time followed by 1200 s switch interval, 36 h run time in 1.0 X TAE (40 mM Tris, 50 mM acetate. 2.0 mM EDTA. pH 8.0) buffer at 14°C. Lane Ml: S. c’erel isine YNN295 strain; lane M2: S. pombe 972hstrain. sporotrichosis. The clinical form in all patients, was either lymphocutaneous or fixed cutaneous. It is noted that 7 of the 8 patients were farmers, supporting the general notion that the soil is an important reservoir of S. schenckii. 3.2. Karyotypes of S. schenckii Both the agarose-spheroplastmethod and the liquid-spheroplast method were used to prepare DNA samplesas stated. The two methods gave virtually the same results, although clearer patterns were obtained with samplesprepared by the former means (data not shown), probably becauseDNA was more easily degraded during the preparation of spheroplasts in fluid than in solid agar. The results of electrophoresis patterns obtained with DNA prepared by the agarose-spheroplast method are shown in Figs. 2-5. Four different analytical experimental conditions were used to separate DNAs with a wide range of molecular weight from 460 kbp to 6200 kbp. Under the initial conditions. three chromosomal DNA bands were resolved by CHEF analysis (Fig. 2). In this gel the smallest chromosomalband was detected in strain nos. 1. 2. MlM21 4, 6, and 7 and estimatedto be 460 kbp in molecular mass. In second condition both switching time and running time were prolonged (Fig. 31, since prolongation of switching time and lowering agaroseconcentration are reported to be effective in separating high molecular mass DNAs from each other [I 81. The smallestband was seenin strain nos. 1, 2, 4: 6. 7 and 8 and estimated to be 1100 kbp. To further separate the larger band(s), the following changes were madein analytical conditions: useof 1.OX TAE buffer in place of 0.5 X TBE buffer; decrease in included angle; prolongation of switching time; and decrease in the agarose concentration. It is also known that Tris-acetate buffer can speed up migration and that the decreaseof the included angle can increase the running velocity [ 181.Under the modified analytical conditions, the two large bandsshown in Fig. 3 were separatedinto 6 bands(Fig. 4). three smaller bands were observed in all strains and estimated to be 3900, 3400 and 3000 kbp in molecular size. The switch time was further increasedto 1800 s to analyze the largest three bands. As shown in Fig. 5, they were clearly separablefrom each other in all strainsand estimatedto be 6200, 5600 and 4600 kbp. However, there remainsthe possibility that the largest 2345678 + - 6200 kbp 5600 kbp f- 4600 kbp Fig. 5. CHEF electrophoresis of 8 S. schmckii strains. The electrophoresis was performed by CHEF Mapper apparatus. 0.8% agarose. 2 V/cm, 106” included angle, 1800 s witch interval, 72 h run time in 1 .O X TAE buffer at 14°C. Lane MI: S. cerrc~isitrr YNN295 strain; lane M2: S. pomhe 972h- strain. 152 T. Tat&hi et al. / FEMS Immunology md Microhiologv 13 ClYY61 147-134 4. Discussion W 6200 5600 4600 3900 -------m 3400 3000 --m- ---m -w-----m 1100 460 Strain Medical No. Fig. 6. Summarized illustrated. 1 2345678 data of electrophoretic analysis schematically band may exceed 6200 kbp becauseno size marker larger than 5700 kbp which is equivalent to the largest chromosome of S. pombe was available. These higher molecular bands from 3 to 7 Mbp were smudging because of the limitation of our PFGE apparatus.The intensities of the bandsestimated460 kbp, I 100 kbp and 4600 kbp were very weak compared with others. We do not know whether they reflected the ploidy or the chromosomelength polymorphism. But all chromosome bands revealed in Fig. 6 could be detected reproducibly. Summarized data on electrophoretic analysis are schematically illustrated in Fig. 6. Total genomesize was calculated to be approx. 28 Mbp. The number of chromosomesvaried from six to eight among the different strains. Three different karyotypes were recognized: the first type (strain nos. I, 2, 4, 7 and 8) was characterized by existence of all eight chromosomal bands, the second type (strain nos. 3 and 5) was lacking in both 460 kbp and I 100 kbp bands, and the third type (strain no. 6) was lacking in only the 460 kbp band. The conventional taxonomical classification typing of fungi is usually made on the basis of their morphological. biochemical and/or serological properties. With S. schenckii, there is broad variety in the productivity of pigment, the utility of sugar(s), morphological characteristics. suchas conidial states, growth temperature [19]. and the conditions of conversion to yeast form among different strains. No serological type or physiological type of this fungal specieshas been clearly defined. Although a limited number of papers dealing with serological [20] and biochemical [ 191typing of S. schenckii have been published, no definite serotype or biotype of this fungus has yet been accepted. Various molecular biological techniques have recently been introduced to medical mycology for identification and typing of pathogenic fungi [21]. PFGE has now proved useful as one meansof this molecular typing. In the present study, the karyotypes of eight S. schenckii strains isolated from patients with sporotrichosis who lived within a radius of 20 km of each other in Ibaraki prefecture, a part of the Kanto district in Japan (Fig. I) were determined to be engagedin farming or dairy cattle. BecauseS. scherzckii inhabits the soil and plants [3], it is highly probable that patients became infected with this fungus while they were in the field and in contact with soil within the restricted area. Our finding showed that the S. schenckii strainshave 6 to 8 chromosomesand it is interesting to note that their detected karyotypes were relatively well conserved. Although the karyotypic patterns of the 8 strains tested looked similar, they could be classified into three groups depending on the presenceor absence of 460 kbp and/or 1100 kbp chromosomes. As shown in the present study, PFGE karyotype of S. schenckii isolates do not appear to be related with the clinical forms of sporotrichosisthey caused. Nishikawa et al. 1201reported that although there are antigenic varieties among different S. schenckii strains, they did not find any relationship between antigenic pattern and isolation sources,clinical forms of the disease, or the morphology of yeast-form cells. We were also unable to correlate the karyotype of S. schenckii strains with any of their cultural or morphological properties, including the morphology of growing colonies on conventional agar media or microconidia produced. However, it is of note that all of the 8 strains tested in this study converted into yeast form cell at about 34°C and none of them was capable of growing at a temperature of 35°C or above. It is generally accepted that optimal temperature for mycelial to yeast-form conversion of S. s&r&i is usually around 37°C [3]. Dixon et al. reported that only 29 of 69 environmental Sporothrix isolates but all of 21 clinical isolatesof S. schenckii grew at 37°C and converted into yeast form [6]. Karyotyping studies with those S. schenckii strains in which mycelial to yeast-form conversion occurs at 37°C are needed.It remainsto be answered whether or not a karyotype relates to certain phenotypes of S. schenckii. Working on C. nlbicans strains, Mahrous et al. attempted to find a relationship between karyotype and phenotype (morphology, API profile. serotype. production of proteinase or virulence to mice) but failed [22]. Increased numbers of phenotypic characters will be neededfor such studieswith C. albicnns and S. schenckii. In the present study, we succeededin distinguishing the karyotype of S. schenckii by our PFGE method and demonstratedthat the PFGE karyotypes of different S. schenckii isolates show substantial variations in two small DNA bands. In connection with this, those S. schmckii strains which share a common karyotype could be further classified into subgroupswhen they are subjected to Southern hybridization analysis [23], or polymerase chain reaction (PCR) fingerprinting analysis [24]. These additional molecular biological techniques. when used in combination with PFGE, will give us more precise information on molecular types of S. whenckii and probably some other pathogenic fungi. Strain variation. in terms of karyotype. is well known for C. albicms [25] and C. mwfortnans [26]. The present study in which only 8 strainsof S. schenckii isolated from patients inhabiting in such a small and restricted area provides evidence that karyotypes of this speciesin restricted area shows a similarity. To know the occurrence of the variation in that of S. schenckii, such as C. albicuns or C. neof~~rmuns, further studieson karyotyping of S. schenckii strains collected in different areas in Japan and foreign countries should be explore. Takeda et al. reported the results of their molecular epidemiological study carried out with S. schenckii strains isolated from sporotrichosis patients in Japan using the RFLP of fungal mitochondrial DNA [27]. They commented that the RFLP pattern tends to relate to the area where the strain was isolated, but that the group pattern of RFLP differed dependingon the restriction enzymes used: this presumably reflects the existence of many repetitive sequencesin the mitochondrial genes. along with the occurrence of high rate of point mutation 1281. Electrophoretic karyotyping is the first step for the physical map. The genetic knowledge of S. schenckii is very poor. Only the sequenceof the 18s rRNA gene and chitin synthetasegeneswere known. Therefore our karyotype of this specieswill be helpful to analyze its genetic information. References 111Rippon. J.W. (1988) Sporotrichosis. In: Medical Mycology: the Pathogenic Actinomycetes. Third edition. pp. Company. 121Fukushiro. chosis 257. [31 Miyaji. WonsiewicL Philadelphia. R. (1984) Epidemiology and ecology in Japan. Zentralbl. Bakteriol. Mikrobiol. 22X-233. M. and Yamaguchi, H. (Ed.), Fungi and the Pathogenic 325-352, W.B. 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