Journal of Biogeography (J. Biogeogr.) (2011) 38, 1305–1317 ORIGINAL ARTICLE Alien plants associate with widespread generalist arbuscular mycorrhizal fungal taxa: evidence from a continental-scale study using massively parallel 454 sequencing Mari Moora1*, Silje Berger2 , John Davison1, Maarja Öpik1, Riccardo Bommarco3, Helge Bruelheide4, Ingolf Kühn5, William E. Kunin6, Madis Metsis7,8, Agnes Rortais9à, Alo Vanatoa10, Elise Vanatoa1, Jane C. Stout11, Merilin Truusa7,8, Catrin Westphal12§, Martin Zobel1 and Gian-Reto Walther13 1 Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, 40 Lai St., 51005 Tartu, Estonia, 2Institute of Geobotany, University of Hannover, Nienburger Strasse 17, 30167 Hannover, Germany, 3Department of Ecology, Swedish University of Agricultural Sciences, SE-75007 Uppsala, Sweden, 4Institute of Biology/ Geobotany and Botanical Garden, Martin Luther University Halle Wittenberg, Am Kirchtor 1, 06108 Halle, Germany, 5UFZ, Helmholtz Centre for Environmental Research – UFZ, Department of Community Ecology, Theodor-Lieser-Strasse 4, 06120 Halle, Germany, 6Earth & Biosphere Institute, IICB, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK, 7Tallinn University of Technology, Centre for Biology of Integrated Systems, Akadeemia tee 15A, Tallinn 12618, Estonia, 8BiotaP LLC, Akadeemia tee 15, Tallinn 12618, Estonia, 9Laboratoire Evolution Génomes et Spéciation, CNRS, 91190 Gif-surYvette, France, 10Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Fr.R. Kreutzwaldi 5, Tartu 51014, Estonia, 11School of Natural Sciences, Trinity College Dublin, Dublin 2, Ireland, 12 Department of Animal Ecology I, Working Group Animal Population Ecology, University of Bayreuth, 95440 Bayreuth, Germany, 13 Department of Plant Ecology, University of Bayreuth, 95440 Bayreuth, Germany *Correspondence: Mari Moora, Institute of Ecology and Earth Sciences, University of Tartu, 40 Lai St., 51005 Tartu, Estonia. E-mail: [email protected] ª 2011 Blackwell Publishing Ltd ABSTRACT Aim The biogeography of arbuscular mycorrhizal (AM) fungi is poorly understood, and consequently the potential of AM fungi to determine plant distribution has been largely overlooked. We aimed to describe AM fungal communities associating with a single host-plant species across a wide geographical area, including the plant’s native, invasive and experimentally introduced ranges. We hypothesized that an alien AM plant associates primarily with the geographically widespread generalist AM fungal taxa present in a novel range. Location Europe, China. Methods We transplanted the palm Trachycarpus fortunei into nine European sites where it does not occur as a native species, into one site where it is naturalized (Switzerland), and into one glasshouse site. We harvested plant roots after two seasons. In addition, we sampled palms at three sites in the plant’s native range (China). Roots were subjected to DNA extraction, polymerase chain reaction (PCR) and 454 sequencing of AM fungal sequences. We analysed fungal communities with non-metric multidimensional scaling (NMDS) ordination and cluster analysis and studied the frequency of geographically widespread fungal taxa with log-linear analysis. We compared fungal communities in the roots of the palm with those in resident plants at one site in the introduced range (Estonia) where natural AM fungal communities had previously been studied. Results We recorded a total of 73 AM fungal taxa. AM fungal communities in the native and introduced ranges differed from one another, while those in the invasive range contained taxa present in both other ranges. Geographically widespread AM fungal taxa were over-represented in palm roots in all regions, but especially in the introduced range. At the Estonian site, the palm was colonized by the same community of widespread AM fungal taxa as associate with resident habitat-generalist plants; by contrast, resident forest-specialist plants were colonized by a diverse community of widespread and other AM fungal taxa. Main conclusions AM fungal communities in the native, invasive and experimentally introduced ranges varied in taxonomic composition and richness, but they shared a pool of geographically widespread, non-host-specific taxa that might support the invasion of a generalist alien plant. Our dataset provides the first geographical overview of AM taxon distributions obtained using a single host-plant species. http://wileyonlinelibrary.com/journal/jbi doi:10.1111/j.1365-2699.2011.02478.x 1305 M. Moora et al. Present address: Silje Berger, Norwegian Coastal Administration, Department for Emergency Response, Moloveien 7, 3187 Horten, Norway. à Present address: Agnes Rortais, Emerging Risks Unit, EFSA, Largo N. Palli 5/A, 43100 Parma, Italy. § Present address: Catrin Westphal, Agroecology, Department of Crop Science, Georg-AugustUniversity Göttingen, Waldweg 26, 37073 Göttingen, Germany. Keywords Arbuscular mycorrhizal fungi, biotic invasion, China, Europe, forest ecosystem, fungal diversity, Glomeromycota, host specificity, soil microbial community, Trachycarpus fortunei. INTRODUCTION Most studies of the distribution and abundance patterns of species focus on conspicuous macro-organisms, while microbial communities such as those of arbuscular mycorrhizal (AM) fungi remain relatively understudied (Chaudhary et al., 2008; Dumbrell et al., 2010). AM fungi, which belong to the phylum Glomeromycota (Schüssler et al., 2001), are obligate plant-root endosymbionts and associate with more than 80% of all vascular plant species (Smith & Read, 2008). Through this mutualism, AM fungi gain all of their carbon from a host plant while delivering to the plant a range of benefits, including improved nutrient acquisition. The prevalence and potential importance of these interactions suggest that AM fungi play a key role in determining the distribution and abundance of plant species, and consequently in shaping terrestrial ecosystems (Fitter, 2005). Despite this, the cryptic lifestyle of AM fungi means that large-scale data on their distribution and abundance have remained scarce (Fitter, 2005; Öpik et al., 2006, 2010). Consequently, the development of specific hypotheses regarding the role of AM fungi in influencing plant distribution and structuring plant communities has been impeded (Bever et al., 2010). Our limited understanding of the distribution of AM fungi has hindered the development of theory concerning the role played by microbial organisms in shaping plant invasions. Direct and indirect mechanisms by which plant and soil microbial community interactions can influence the invasiveness of alien plant species have only recently been considered (Mitchell et al., 2006; Reinhart & Callaway, 2006; van der Putten et al., 2007; Rodrı́guez-Echeverrı́a, 2010). AM fungi associate with the majority of plant species, are globally distributed and are generally believed to exhibit low host specificity (Smith & Read, 2008). As such, they may appear unlikely candidates to explain the invasive dominance of certain alien plants (Richardson et al., 2000). Indeed, using an experimental approach, Klironomos (2002) found that local AM fungi generally had a similar effect on native and invasive plant species. On this basis, it seems reasonable to conclude that AM fungi do not play a major role in either facilitating or hindering plant invasions. However, recent studies have proposed scenarios whereby AM fungi play a 1306 more significant role in plant invasions (Pringle et al., 2009; Shah et al., 2009). As AM fungal taxa exhibit host-specific growth responses (Helgason et al., 2002; Bever, 2003) and invoke differential growth responses in host-plant species (Klironomos, 2003; Moora et al., 2004a,b), there is some potential for new combinations of alien species and resident AM fungi to yield strong mutualistic interactions (Reinhart & Callaway, 2006). However, to the best of our knowledge, it has not been demonstrated that alien plants establish new soil-borne mutualisms that specifically lead to dominance and the competitive exclusion of native species. Another way in which invasive plants may influence the composition and density of resident AM fungal communities is by failing to promote local AM fungi to the same extent as native species do (Hoffman & Mitchell, 1986; Mummey & Rillig, 2006; Hausmann & Hawkes, 2009; Vogelsang & Bever, 2009), or by inhibiting them via root exudates (Callaway et al., 2008). As host plants can shape distinctive mycorrhizal communities even when presented with the same AM fungal inocula (Uibopuu et al., 2009), invasive plants seem likely to produce altered AM fungal communities under any of the scenarios mentioned above (Zhang et al., 2010). Thus, it seems likely that an invader may contribute to a decrease in AM fungal density and/or to a change in local AM fungal diversity, which could detrimentally affect resident plant communities. Recent findings show that while the composition of local AM fungal communities can be very variable in nature (Dumbrell et al., 2010), some AM fungal taxa are ubiquitous (Öpik et al., 2006, 2010). Moreover, widely distributed AM fungi tend to associate with a wide range of host plants, including habitat-generalist plant species, while less common AM fungi are more likely to associate with host-plant species that occupy a narrower ecological (Öpik et al., 2009) and correspondingly also geographical (Öpik et al., 2010) range. As successful plant invaders are frequently generalists (e.g. Kühn et al., 2004; Küster et al., 2008), we hypothesize that invasive AM plants are likely to be generalist hosts that associate primarily with the widely distributed generalist AM fungal taxa present in any novel range. In this way, invasive AM plants might have the potential to accelerate a homogenization of the biosphere, to the extent that a limited set of AM fungal species Journal of Biogeography 38, 1305–1317 ª 2011 Blackwell Publishing Ltd Invasive plants associate with ubiquitous arbuscular mychorrhizal fungi becomes widespread and dominant over several continents, to the detriment of biodiversity. In this study we use a high-throughput pyrosequencing methodology – 454 SequencingTM (454 Life Sciences, Branford, CT, USA) of the small subunit ribosomal RNA (SSU rRNA) gene – to describe AM fungal communities associated with the roots of an alien AM plant species, Trachycarpus fortunei (Hook.) Wendl. (Arecaceae). Originating from China and introduced into Europe as an ornamental species, this palm has successfully colonized deciduous forests and has established a vigorous population in the southern foothills of the Alps (Walther, 2003). First, we use experimentally introduced T. fortunei plants as ‘bait plants’ (sensu Öpik et al., 2003; Sykorova et al., 2007) to characterize AM fungal communities over a wide geographical area outside the native range of the host plant (nine sites in seven European countries, Walther & Berger, 2010). This could indicate whether native AM fungi associate with the alien host plant and might therefore be considered as potential mediators of the invasion process. Second, applying a biogeographical approach (Hierro et al., 2005), we compare the AM fungal communities associated with T. fortunei in its experimentally introduced range with those in its native range in both China and Switzerland in order to determine whether AM fungal community patterns in the respective ranges might be correlated with the invasive success of T. fortunei. In particular, we focus on the geographical range of AM fungal taxa. We predict that the AM fungi partnering the alien palm should predominantly be those with a known wide geographical range. Third, we compare the AM fungal communities in the roots of the experimentally introduced host with those in resident plant species at one of the sites in the introduced range (Estonia) where AM fungal communities associated with different host-plant ecological groups (habitat-specialist and habitat-generalist plant species) have previously been described (Öpik et al., 2009). We predict that the AM fungi partnering the alien palm should also be locally present in the roots of a wide range of hosts. MATERIALS AND METHODS Target plant species Trachycarpus fortunei occurs naturally in Southeast Asia, but the species is grown ornamentally in many temperate and subtropical regions outside its native range (Walther et al., 2007). Regeneration from cultivated palms has led to the establishment of naturalized T. fortunei populations in the southern foothills of the Alps (Walther, 2003). The rapid expansion of T. fortunei into the semi-natural forests of Central Europe has been driven by changes in winter temperature and growing season length, and seems likely to continue as the climate warms further (Walther et al., 2007). Trachycarpus fortunei forms associations with AM fungi, making it a suitable model for investigating the presence and Journal of Biogeography 38, 1305–1317 ª 2011 Blackwell Publishing Ltd composition of AM fungal communities colonizing invasive plant roots. Nomenclature of vascular plants follows Flora Europaea (Tutin et al., 2001). Sowing experiment Experimental introduction of T. fortunei seeds was performed at nine sites, located in several biogeographical subregions across Europe, where the palm does not already occur as a native. The sites constituted part of the Field Site Network (Table 1, Hammen et al., 2010), which was established within the framework of the European FP6 project ALARM (Settele et al., 2005). A further sowing experiment was performed near Locarno, Switzerland, where T. fortunei has been naturalized since the 1970s (Walther et al., 2007). To provide a reference against which to compare the germination and seedling establishment success of the study plant in field conditions, seeds were also sown in a greenhouse at the botanical gardens, University of Hannover, Germany, using regular compost soil. All the experimental sites and native range sampling sites used in this study were located in forest vegetation, and all on mesic soil with gleic texture. We thus expect that geographically driven variation in AM fungal communities between sites is considerably larger than variation resulting from local environmental conditions such as soil nutrients and moisture content. Seeds were sown following the same protocol at all sites. Within each site, three 0.5 · 0.5 m plots (5–30 m apart, except for the Serbian site, where the maximum distance between plots was 300 m) were established in an area of woodland (canopy cover c. 50%). In order to facilitate the germination and establishment of T. fortunei and to avoid a competitive effect from resident plants, soil was removed from each plot to a depth of 15 cm; large roots, stones and other coarse materials were removed, and soil returned to half of the plot, to one side of the diagonal. The other half was filled with locally available sterile commercial potting soil to account for potential edaphic variation across sites. Seeds of T. fortunei used at all sites were collected from two palm individuals in Locarno (Switzerland) in February 2006. Twenty-five seeds were sown on each soil type (50 seeds per plot) at the beginning of the 2006 growing season in the majority of experimental sites, including the greenhouse. In Austria and Serbia, the experiment started in the spring of 2007. All plants were harvested in the autumn of 2007. Seedlings had 1–3 leaves at the time of harvesting. Root sampling The entire root systems of up to 12 experimental plants (six each from natural and potting soil) were collected from each plot, depending on the number of plants surviving at the end of the experiment. Final sample sizes varied between 4 and 34 root samples per site (Table 1). In the cases of Austria and Germany3 (Barterode), only plants from potting soil were available at the end of the experiment. Samples from China were collected in October 2008 from three localities where the target plant grows naturally (Table 1). At each locality, 10 1307 1308 23 16 7.5 27 25 32.5 14 14 11.5 23 35.7 30.6 36 20.3 21 16 7 24 25 31 14 14 11 20 35 25 26 20 ± ± ± ± ± ± ± ± ± ± ± ± ± ± 2.9 0.5 1.3 4.58 0 2.6 0.25 0 1.3 4.18 1.4 8.5 10.3 0.9 Chao1 ± SD No. of VT randomly selected T. fortunei seedlings were harvested, and c. 4 g of root mass was collected per individual. Root sampling and storage protocol followed Öpik et al. (2008). All root samples were sent to the University of Tartu (Estonia) for DNA extraction. N; N; N; N; N; N; N; N; N; N; N; N; N; N; 5949¢ 5912¢ 5858¢ 5318¢ 5223¢ 5221¢ 5132¢ 4850¢ 4729¢ 4610¢ 4510¢ 2927¢ 2928¢ 2924¢ Torrmyra* Nøtterøy Koeru* Dublin* Hannover Hannover Barterode* Île-de France* Gumpenstein* Locarno Grabovo* Hong Yuan1 Hong Yuan2 Gutianshan Nat. Reserve Sweden Norway Estonia Ireland Germany1 Germany2 Germany3 France Austria Switzerland Serbia China1 China2 China3 SE NO EE IE DE1 DE2 DE3 FR AT CH RS CN1 CN2 CN3 Location Site *Sites that belong to the ALARM field-site network (Hammen et al., 2010). Samples available from one soil type only. Broadleaf forest Coniferous forest Coniferous forest Botanical gardens Greenhouse Mixed broadleaf forest Mixed broadleaf forest Mixed broadleaf forest Coniferous forest Mixed broadleaf forest Mixed broadleaf forest Broadleaf forest Broadleaf forest Broadleaf forest Quercus robur Pinus sylvestris Picea abies Betula pendula Not relevant Fagus sylvatica Fagus sylvatica Castanea sativa Abies alba Castanea sativa Crataegus monogyna Arecaceae spp. Arecaceae spp. Arecaceae spp. 18 14 34 29 6 23 6 18 4 32 18 10 10 10 3364 30,173 7284 33,059 7633 5139 322 2733 2279 5443 6093 1715 3464 1183 2932 12,798 3912 21,160 4326 4127 216 1790 471 3779 4342 1353 2817 978 Molecular analyses 1722¢ E 1024¢ E 2603¢ E 615¢ W 942¢ E 947¢ E 946¢ E 238¢ E 1404¢ E 847¢ E 1937¢ E 11808¢ E 11808¢ E 11811¢ E Habitat Dominant canopy sp. No. of samples No. of sequences No. of AMF sequences Molecular identification of AM fungi Country Table 1 Site characteristics and details of recorded arbuscular mycorrhizal (AM) fungi associated with Trachycarpus fortunei. For each site, totals are presented for each of the following: samples analysed (plant individuals); sequences obtained; obtained sequences that corresponded to known Glomeromycota sequences; and detected arbuscular mycorrhizal fungal (AMF) virtual taxa (VT). The estimated asymptotic AM fungal taxon richness (Chao1 index ± standard deviation) is also presented for each site. M. Moora et al. A 20-cm subsample of the root system of each plant was used for DNA extraction, polymerase chain reaction (PCR) and 454 sequencing, as in Öpik et al. (2009). We pooled the extracted DNA samples from individual plants (using an equal volume from each individual) for each substrate type and site combination (i.e. natural and potting soil samples were pooled separately at each site where samples from both substrates were available). The resulting 22 sample mixes were subjected to amplicon isolation and 454 sequencing. Glomeromycota sequences were amplified from the DNA mixtures using the SSU rRNA gene primers NS31 and AM1 linked to sequencing primers A and B, respectively. Most data concerning the natural diversity of AM fungi have been obtained using this molecular marker (Öpik et al., 2010) and thus can be used for purposes of comparison. The NS31/AM1 primer pair amplifies a c. 550-bp central fragment of SSU rDNA in most Glomeromycota, but excludes the basal families Archaeosporaceae and Paraglomaceae (Helgason et al., 1998; Daniell et al., 2001). In order to identify sequences originating from different samples, we used a set of 6-bp barcodes designed following Parameswaran et al. (2007). The barcode sequences were inserted between the A primer and NS31 primer sequences. Thus, the composite forward primer was 5¢ GCCTCCCTCGCGCCATCAG (NNNNNN) TTGGAGGGCA AGTCTGGTGCC 3¢ and the reverse primer 5¢ GCCTTGC CAGCCCGCTCAGGTTTCCCGTAAGGCGCCGAA 3¢, where the A and B primers are underlined, the barcode is indicated by Ns in parentheses, and the specific primers NS31 and AM1 are shown in italics (Öpik et al., 2009). Sequences that were included in further analyses had to meet a length criterion of ‡ 160 bp including barcode and primer A sequences, but otherwise PCRs and quality control of 454 sequencing reads were performed as in Öpik et al. (2009). Bioinformatic analyses In order to facilitate the taxonomic assignment of obtained sequences, we upgraded a pre-existing database of published Glomeromycota SSU rRNA gene sequences (Öpik et al., 2006). This database (MaarjAM) (Öpik et al., 2010) contains representative NS31/AM1 sequences from published Glomeromycota sequence-based taxa and known morphospecies. As of 6 February 2010, MaarjAM contained a total of 2044 records that could be associated with SSU sequence-based taxa (referred to as ‘virtual taxa’ or VT) (cf. Öpik et al., 2009), including 1607 records with SSU rRNA gene sequences. Glomeromycota Journal of Biogeography 38, 1305–1317 ª 2011 Blackwell Publishing Ltd Invasive plants associate with ubiquitous arbuscular mychorrhizal fungi sequence-based taxa were generated following automatic sequence alignment using the MAFFT multiple sequence alignment web service implemented in JalView 2.4 (Clamp et al., 2004) and neighbour-joining analysis of all MaarjAM sequences (Milne et al., 2004). A total of 291 virtual taxa were defined on the basis of bootstrap support and sequence similarity of ‡ 97%. These criteria produced groupings with sequence variability similar to those used by several previous authors (e.g. Helgason et al., 1998; Öpik et al., 2008). Following the removal of identical sequences, 1210 sequences were retained in a non-redundant sequence dataset for use in blast searches (see below). The 454 sequencing reads were used to query the nonredundant set of Glomeromycota SSU rRNA gene sequences from the MaarjAM database using the blast algorithm, following the same criteria as in Öpik et al. (2009). The virtual taxa that were detected as blast matches are indicated in Fig. 1 and Appendix S1 in the Supporting Information, following the virtual taxon classification from Öpik et al. (2009). A sample of sequencing reads including examples from each encountered AM fungal virtual taxon has been deposited in GenBank under accession numbers GU198530–GU198746 (217 unique sequences in total; £ 3 sequences per virtual taxon). An additional blast search against the GenBank nonredundant nucleotide database was used to detect nonGlomeromycota sequences in our dataset. All blast search results were parsed using the ‘tcl blast parser version 038’ (Kozik et al., 2003). Several statistical methods are available to estimate the asymptotic number of taxa present at a site, including undetected taxa (Chao et al., 2009). For each site we used Coleman rarefaction analysis to produce AM fungal taxon accumulation curves and calculated Chao1, jackknife and bootstrap asymptotic richness estimators using 50 randomizations without replacement (in EstimateS 8.0.0; Colwell, 2006). All estimators gave very similar results, so we present only the values of the Chao1 estimator (Table 1). For the focal regions of Europe and Asia we calculated the expected number of fungal virtual taxa falling into three categories of biogeographical distribution using the corresponding proportions of accessions in the MaarjAM database: taxa previously (1) found only in the focal region; (2) found in the focal region and elsewhere; and (3) not found in the focal region (Fig. 2 bar A shows these categories for Europe; Fig. 2 bar D shows these categories for Asia). Chisquare tests were used to compare these expected values with the observed number of taxa belonging to each of the three distribution categories: the introduced range (compared with the expected number of taxa for Europe); the invasive range (compared with the expected number of taxa for Europe); and China (compared with the expected number of taxa for Asia). Log-linear analyses were performed to test whether the frequencies of fungal virtual taxa with different known global distributions differed among the AM fungal communities colonizing the study plant in the European localities (11 sites, including Switzerland) and in China (three sites). Statistical analyses RESULTS Our field observations suggested that the small plots (0.125 m2) containing potting soil were efficiently colonized by the roots of local understorey plants during the timeframe of the experiment. Furthermore, the AM fungal communities that colonized palm roots in potting soil did not differ from those in adjacent natural soil plots in terms of species richness (ANOVA F1,14 = 0.61, P = 0.45) or, even more importantly, in composition permutational multivariate analysis of variance [PerMANOVA (Anderson, 2001) F1,12 = 0.18, P = 0.99]. For these reasons, we pooled the data coming from the two substrate types at each of the respective eight sites (excluding CN, DE 1, DE 3 and AT), resulting in 14 sites prior to further analysis (Table 1). Similarity between the AM fungal communities present at the various sites was analysed using cluster analysis and nonmetric multidimensional scaling (NMDS) based on the presence or absence of fungal virtual taxa (McCune & Grace, 2002). Previously published data on the AM fungal communities inhabiting native plant species at the Estonian study site (a 10 · 10 m plot known as plot Z sensu Öpik et al., 2008, 2009) allowed us to compare the native fungal community with that associated with T. fortunei at the same site using cluster analysis. These analyses and PerMANOVA were performed using pc-ord for Windows version 5 (MjM Software, Gleneden Beach, OR, USA). Journal of Biogeography 38, 1305–1317 ª 2011 Blackwell Publishing Ltd AM fungal communities in palm roots The 454 sequencing analysis of the 14 composite samples (Table 1) yielded a total of 109,884 sequences that had a length ‡ 160 bp (max 295 bp, median 245 bp) and displayed the correct tag and primer sequences. A blast search against the GenBank non-redundant database indicated the presence of non-Glomeromycotan sequences, with hits to sequences of fungal taxa in the Ascomycetes and Basidiomycetes in most cases, and to a lesser extent also to those of other fungi or plants (data not shown). The putatively non-Glomeromycotan sequences had 23,318 sequence reads (i.e. 21.2% of the total). The total number of known Glomeromycota sequences among the 454 sequencing reads was 65,001 (i.e. 59.2% of all sequences; ranging between 21% and 87% for each sample; Table 1). These sequences were assigned to 73 virtual taxa from the MaarjAM database (see Appendix S1). This number excludes nine taxa that were represented by a single sequence and were removed from further analysis. The 73 virtual taxa belonged to Glomeraceae (i.e. Glomus group A, 55), Acaulosporaceae (8), Gigasporaceae (4), Diversisporaceae (3) and Glomus group B (3) (Fig. 1). Fungal community composition in the roots of study plants at the various localities is provided in Fig. 1 and Appendix S1. Two fungal taxa were detected at all 1309 M. Moora et al. MaarjAM virtual taxon VT 200 VT 129 VT 62 VT 33 VT 135 VT 162 VT 186 VT 193 VT 56 VT 163 VT 72 VT 196 VT 34 VT 26 VT 151 VT 212 VT 214 VT 198 VT 152 VT 143 VT 160 VT 140 VT 64 VT 191 VT 74 VT 108 VT 37 VT 199 VT 145 VT 115 VT 113 VT 49 VT 60 VT 166 VT 114 VT 125 VT 219 VT 57 VT 187 VT 275 VT 52 VT 273 VT 247 VT 194 VT 156 VT 201 VT 89 VT 259 VT 224 VT 24 VT 69 VT 95 VT 84 VT 80 VT 181 VT 222 VT 90 VT 264 VT 130 VT 45 VT 188 VT 270 VT 267 VT 180 VT 53 VT 211 VT 227 VT 124 VT 39 VT 122 VT 255 VT 54 VT 216 Occurrence EU,AM EU,AM,AF EU,AS,AM,AF EU EU EU EU EU,AS EU,AM,AF EU,AM EU,AM EU AM EU AM AM EU,AM EU AM EU,AM,AF EU,AM EU,AM EU,AS,AM,AF EU,AS,AM,AF EU,AM,OC EU,AS,AM EU EU,AS,AM EU,AM EU,AS,AM EU,AS,AM EU,AS,AM EU,AS,AF EU,AS,AM,AF,OC EU,AM EU,AM EU,AS,AM,AF EU,AS,AM EU,AM EU,AM EU,AM EU,AM EU,AS,AM,AF EU,AS,AM EU,AS,AM AM EU AS AS AM EU,AM,AF EU,AM,AF EU,AS,AM AS AF EU,AS,AM AS CU EU,AS,AF AM,AF EU AF AM AF AM AF AF AM AS,AM EU,AM AS,AM EU EU Genus/Group Glomeraceae Glomeraceae Diversisporaceae Acaulosporaceae Glomeraceae Glomeraceae Glomeraceae Glomus group B Glomus group B Glomeraceae Glomeraceae Glomeraceae Acaulosporaceae Acaulosporaceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Acaulosporaceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Gigasporaceae Diversisporaceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Glomus group B Glomeraceae Glomeraceae Gigasporaceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Acaulosporaceae Glomeraceae Glomeraceae Glomeraceae Acaulosporaceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Acaulosporaceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Glomeraceae Acaulosporaceae Glomeraceae Gigasporaceae Glomeraceae Gigasporaceae Diversisporaceae Glomeraceae Species Glomus hoi CN1 CN3 CN2 CH IE DE1 FR NO RS DE2 AT DE3 SE EE G. claroideum, lamellosum, luteum, etunicatum Acaulospora scrobiculata G. vesiculiferum G. fasciculatum Scutellospora dipurpurescens G. intraradices S. aurigloba G. manihotis G. clarum S. cerradensis, reticulata, heterogama, dipapillosa Figure 1 Occurrence of Glomeromycota in the native (CN, grey), invasive (CH, chequer) and introduced (black; see codes in Table 1) ranges of Trachycarpus fortunei. The ‘Occurrence’ column denotes the previously known range of each virtual taxon: Europe (EU), Asia (AS), America (AM), Africa (AF), Oceania (OC), spore culture without known geographical origin (CU). Each row corresponds to a different fungal taxon, with filled cells indicating its presence and open cells its absence at a given site. The table is ordered following the nonmetric multidimensional scaling (NMDS) ordination whereby sites are ranked according to their score on the first ordination axis. The final NMDS solution had three dimensions, and stress was 9.33, which was significantly lower than for randomized data (Monte Carlo test, P < 0.02, 250 runs). Collectively, the axes explained 88.7% of the variation in the data, with axes 1 and 2 explaining 35.1% and 28.6%, respectively. study sites: Glomus sp. (VT 113, related to G. fasciculatum) and Glomus sp. (VT 115, related to G. vesiculiferum). Rarefaction analysis suggested that sampling intensity was sufficient, as fungal taxon accumulation curves reached an 1310 asymptote in most cases (Fig. 3). Richness estimator analysis showed that the estimated AM fungal taxon richness was similar to the observed richness for most sites, again indicating sufficient sampling effort (Table 1). However, the expected Journal of Biogeography 38, 1305–1317 ª 2011 Blackwell Publishing Ltd Invasive plants associate with ubiquitous arbuscular mychorrhizal fungi Proportion of AM fungal taxa 100% A B C D E Expected Europe Observed EU Observed CH Expected Asia Observed CN 80% 60% 40% 20% 0% Figure 2 Comparison of the geographical distribution of Glomeromycota taxa recorded in the introduced (bar B), invasive (bar C) and native (bar E) ranges of Trachycarpus fortunei with expected values for Europe (bar A) and Asia (bar D) based on accessions in the MaarjAM database. The proportion of taxa falling into different categories of geographical range are presented in the bars: white – taxa recorded only in Europe (for bars A, B, C) or only in Asia (for bars D, E); grey – taxa recorded in Europe and elsewhere (A, B, C) or recorded in Asia and elsewhere (D, E); black – taxa absent in Europe (A, B, C) or absent in Asia (D, E). 40 RS 35 DE2 30 Figure 3 Expected arbuscular mycorrhizal fungal (AMF) taxon accumulation curves (Coleman rarefaction) along the number of sequences obtained from the various study sites in Europe and China. Grey lines indicate sites from the native range of Trachycarpus fortunei. Curves are presented up to a maximum of 5000 sequences. See Table 1 for site codes and total numbers of sequences. No. of AMF taxa CN2 IE SE CN3 20 CH NO DE3 15 FR AT 10 EE 5 0 1 251 501 751 1001 1251 1501 1751 2001 2251 2501 2751 3001 3251 3501 3751 4001 4251 4501 4751 number of taxa was somewhat higher than observed in Ireland (12%), Switzerland (13%), China1 (17%) and China2 (28%). Comparison of native, invasive and experimentally introduced ranges Forty-nine AM fungal taxa were recorded from T. fortunei in its native range in China, 20 taxa in the invasive range in Switzerland and 46 taxa at the experimentally introduced sites across Europe. Ten fungal taxa were common to all three regions, 21 were specific to the native range in China, two were specific to the invasive range in Switzerland, and 18 were specific to the introduced range in Europe. Fifty-two taxa were recorded from Europe (including Switzerland) altogether (Fig. 1, Appendix S2). Palms grown in the invasive range in Journal of Biogeography 38, 1305–1317 ª 2011 Blackwell Publishing Ltd DE1 CN1 25 No. of sequences Switzerland and those occurring in the native Chinese range shared four fungal taxa, none of which occurred elsewhere in Europe (Fig. 1). Fungal taxon richness at European study sites was variable, ranging from seven taxa in Estonia to 35 taxa in Serbia (Table 1, Fig. 1). Most study sites in Europe shared a common dominant taxon – VT 113 (highest number of detected sequences per site, Appendix S1). The dominant taxon in Sweden was VT 219, while that in the greenhouse trial (DE1) was VT 199. In both sites VT 113 was the second most abundant taxon. All Chinese sites were dominated by different AM fungal taxa: VT 166 in CN1, VT 219 in CN2 and VT 130 in CN3. VT 130 was only recorded in CN3 during this study. The European dominant VT 113 was present at all Chinese sites, but was the third most abundant taxon in CN1 and CN3 and even less abundant in CN2 (Fig. 1, Appendix S1). 1311 M. Moora et al. (a) 2.2 x 10-2 100 3.4 x 10-1 Distance (Objective Function) 6.6 x 10-1 9.9 x 10-1 1.3 75 Information Remaining (%) 50 25 0 EE AT FR DE3 NO SE DE1 DE2 RS IE CH CN1 CN2 CN3 Origin of samples Europe China Switzerland (b) 1.4 x 10-2 100 Fra ves Hyp mac Gal lut Par qua Hep nob Oxa ace Vio mir Ger pra Ver cha Geu riv Tra for Distance (Objective Function) 1.7 x 10-1 3.3 x 10-1 75 4.8 x 10-1 6.4 x 10-1 25 0 Information Remaining (%) 50 Species habitat generalist Cluster analysis of AM fungal communities revealed two clear groups: fungal communities associating with palm roots at the European introduced sites on one hand, and those associating with the roots of plants from native and invasive ranges on the other (Fig. 4a). Occurrence of widespread and regionally specific AM fungal species in palm roots Palm roots from the native, invasive and introduced ranges all hosted significantly more geographically widespread (occurring in two or more continents) AM fungal taxa than expected based on the occurrence of such taxa in regional (Europe or Asia) and global species pools. The difference was more pronounced among European (introduced range v2 = 65.42, d.f. = 2, P < 0.001; invasive range v2 = 25.88, d.f. = 2, P < 0.001) than among Chinese (v2 = 29.37, d.f. = 2, P < 0.001) plants (Fig. 2). There were no site-specific differences in the occurrence of fungal taxa corresponding to the three biogeographical distribution categories of AM fungi among the 11 European sites (including introduced and invasive range; log-linear analysis site · category interaction, v2 = 14.18, d.f. = 20, P = 0.8) or among the three Chinese sites (log-linear analysis site · category interaction, v2 = 0.84, d.f. = 4, P = 0.66). Eight AM fungal taxa were detected for the first time from Europe, and 27 taxa from Asia in the current study. 1312 forest specialist alien Figure 4 Cluster analysis of arbuscular mycorrhizal fungal (AMF) community composition at study sites in (a) the native, introduced and invasive ranges of the palm Trachycarpus fortunei and (b) AM fungal communities associated with different categories of plant species at Koeru, Estonia: habitat generalists, forest specialists and an introduced species Trachycarpus fortunei (Tra for). Sørensen index and a group-averaging linkage method were used. Habitat-generalist plant species: Fragaria vesca (Fra ves), Hypericum maculatum (Hyp mac), Geum rivale (Geu riv), Geranium pratense (Ger pra) and Veronica chamaedrys (Ver cha). Forestspecialist species: Galeobdolon luteum [syn. Lamiastrum galeobdolon, (Gal lut)], Paris quadrifolia (Par qua), Hepatica nobilis (Hep nob), Oxalis acetosella (Oxa ace) and Viola mirabilis (Vio mir). Differences between resident and palm AM fungal communities Detailed analysis of a single experimental introduction site (Koeru, Estonia) revealed that the AM fungal community associated with the introduced alien plant species T. fortunei was similar to that associated with habitat-generalist native plant species (Fig. 4b). In common with these species, T. fortunei hosted relatively few AM fungal taxa (7), which also tended to be the most common fungal taxa inhabiting the roots of indigenous host plants (data from Öpik et al., 2009). DISCUSSION Variation in the AM fungal communities associated with T. fortunei We recorded a total of 73 AM fungal taxa from 14 study sites. Because fungal taxon accumulation curves reached an asymptote in most cases, our dataset can be considered as the first representative Eurasian overview of AM taxon distributions for a single host-plant species. Although recent work has provided important insights into variation in AM fungal communities (Öpik et al., 2006; Dumbrell et al., 2010), understanding of general patterns has clearly been hampered by limited sampling (Fitter, 2005). Our results reveal considerable Journal of Biogeography 38, 1305–1317 ª 2011 Blackwell Publishing Ltd Invasive plants associate with ubiquitous arbuscular mychorrhizal fungi variation between AM fungal communities in the experimentally introduced European sites, all of which were located in wooded habitats. The lowest number of AM fungal taxa was recorded in the roots of palms introduced into sites characterized by coniferous forest and a cold climate (Estonia, Norway, Austria; Hammen et al., 2010). In contrast to the low number of AM fungal taxa (7) that we recorded at the Estonian site, an earlier study recorded 47 taxa for the same site (Öpik et al., 2009). The fact that T. fortunei does not associate with a greater number of the fungal species present at this site may be a consequence of the unfavourable environmental conditions. By contrast, the high diversity of AM fungi recorded at the Serbian site might in part be attributable to the larger spatial extent of this site. The Chinese sites also contained a high diversity of AM fungi, comparable with those of the European sites situated in broadleaf forest. Our finding that c. 17% of fungal taxa found in European samples and c. 57% of those in Chinese samples had never previously been recorded in those respective regions reflects the present state of knowledge about the global distribution of AM fungal taxa. More large-scale studies incorporating multiple continents, biomes, ecosystems and host-plant species are required in order to build an understanding of the biogeography of AM fungi (Fitter, 2005; Chaudhary et al., 2008; Pringle et al., 2009; Dumbrell et al., 2010; Öpik et al., 2010). Comparison of AM fungal communities in the novel and native ranges The role of AM fungi in plant invasions has been largely overlooked (Levine et al., 2004; Mitchell et al., 2006), and information on associations between invasive plant species and AM fungi is extremely limited (Pringle et al., 2009; Shah et al., 2009). Our study showed that AM fungal communities in the palm’s native Chinese range and introduced European ranges differed, while the composition of communities in the invasive Swiss range (although represented by only one study site) contained taxa from both regions. These results lend support to the argument that successful plant invaders are not limited by a lack of mutualistic fungi (Richardson et al., 2000); in our study, the invader seems to have replaced ‘lost’ mutualists from its native range with new mutualists in the introduced and invasive ranges. When the palm–AM fungal associations in the native, invasive and introduced ranges were compared in greater detail, a slightly more complex picture emerged. First, AM fungal communities from the invasive range in Switzerland contained four fungal taxa that also occurred in the host’s native range in China, but not in any of the European introduced sites. One of these fungal taxa was previously known only from Central America (Glomus VT 124), while the other three have been found to have a wider distribution (Gigaspora VT 39, Scutellospora VT 255 and Glomus VT 122) (Öpik et al., 2010). Limited replication of invaded sampling sites means that we cannot reliably determine whether this Journal of Biogeography 38, 1305–1317 ª 2011 Blackwell Publishing Ltd pattern indicates that T. fortunei favours AM fungal taxa that have been or are currently common in its native range, but this topic deserves future attention. AM fungal communities in the invasive range were also notable for the presence of two AM fungal taxa, namely Glomus VT 216 and Otospora VT 54, that were not found at any of the other sites in this study but which have previously been described only from Europe. Future study would be needed to determine whether these taxa are specific and efficient symbionts yielding strong mutualistic interactions that enhanced the successful establishment of T. fortunei in its invasive range, in accordance with Reinhart & Callaway’s (2006) ‘enhanced mutualism hypothesis’. When interpreting these results it is important to keep in mind that, whilst we sampled experimentally grown seedlings in artificially created gaps in the introduced and invasive ranges, we sampled naturally growing plants in the native range. Although disturbed ecosystems have frequently been characterized by a low diversity of AM fungi (Helgason et al., 1998; Daniell et al., 2001; Antunes et al., 2009), we propose that the small-scale soil disturbance applied to facilitate target plant germination in otherwise intact vegetation did not significantly decrease the inoculation potential of the resident AM fungal communities. Root colonization in small gaps from surrounding intact vegetation can be relatively rapid (Pärtel & Wilson, 2002), and the small plots created in the current study were colonized by the roots of neighbouring plants, along with their AM fungal symbionts, in as short a time as several months. With the exception of the Austrian and Serbian sites, plants were grown for two seasons. The comparison of AM fungal communities from identically treated experimental plants over a wide area largely eliminates any potential host and treatment biases. The data obtained suggest that the patterns detected in this study were not biased by the experimental protocol. First, the AM fungal taxon richness associated with naturally growing Chinese seedlings and that with experimentally grown seedlings at European broadleaf forest sites were similar. Second, while there was considerable overlap (28 taxa) between AM fungal communities associated with experimentally and naturally grown seedlings, experimental seedlings in the introduced and invasive ranges harboured distinct AM fungal communities despite identical treatment. Occurrence of widespread versus regional AM fungal taxa By studying T. fortunei in its native, invasive and experimentally introduced ranges, we found that this plant species is capable of hosting a wide range of AM fungal taxa, which is also the case with foliicolous microfungi (Taylor et al., 2000). The taxa with previously described distributions spanning several continents were over-represented in the roots of T. fortunei in all ranges (native, invasive, experimentally introduced), but especially in the European introduced sites. Interestingly, most study sites in Europe shared the same local 1313 M. Moora et al. dominant taxon: globally distributed Glomus sp. (VT 113, related to G. fasciculatum); different dominant taxa were recorded only in the artificial conditions (compost soil) of the greenhouse study and in Sweden. Meanwhile, each site in the native range was characterized by a different dominant taxon, although all were geographically widespread. The results from the European sites conflict with the findings of Dumbrell et al. (2010), who found that AM fungal communities exhibited a strong overdominance of particular AM fungal taxa, but that the dominant taxon in almost all analysed AM fungal communities was different. They proposed that the processes determining the dominance of a particular AM fungal taxon may be stochastic or determined by local adaptation to soil chemistry and host-plant communities. On the basis of our data, it appears that the alien palm might have been able to reshape the local AM fungal communities when any widespread and otherwise appropriate AM fungal partners happened to be present. In addition, repeated association with the same dominant taxon may also indicate that local edaphic conditions were relatively similar between experimental sites. By contrast, our finding that each native population of T. fortunei in China was associated with a different dominant AM fungal taxon matched Dumbrell et al.’s (2010) findings. Perhaps the most likely reason for the different patterns observed in our European data and by Dumbrell et al. (2010) is the different nature of the sampling. We targeted a single, experimentally introduced host-plant species in relatively similar (wooded) habitats and followed the same analytical protocol at all sites; in contrast, Dumbrell et al. (2010) analysed data from multiple studies, representing different ecosystems and host-plant species. Moreover, it is possible that our experimental approach favoured the proliferation of VT 113, which is related to the widespread G. fasciculatum because it has been shown that genotypes of this species and related species (i.e. G. intraradices) are able to colonize a bait plant rapidly and that this colonization is maintained through time (Sykorova et al., 2007). However, their abundance is also high in the roots of natural plants from non-disturbed sites (Öpik et al., 2003, 2008, 2009; Sykorova et al., 2007). The pattern of association between alien host plant and particular widespread AM fungal taxa was further reflected in our observations at the Estonian study site, where extensive information on the resident AM fungal community has recently been collected (Öpik et al., 2008, 2009). The roots of the alien palm were primarily colonized by widespread AM fungal taxa that were also common in the roots of local habitat-generalist plants, while habitat-specialist plant species harboured a variety of more specialized taxa in addition to the widespread AM fungi (Öpik et al., 2009). This pattern might be explained by two possible mechanisms: either generalist fungi are capable of rapidly colonizing the roots of any new plant species, or generalist plant species inhabiting a wide range of habitats favour the proliferation of generalist AM fungal taxa. If a generalist alien plant allows generalist fungi to proliferate and suppress more localized or specific fungal taxa, an alien host plant may indirectly depress the diversity of local 1314 AM fungal communities. Indeed, there is some descriptive evidence that AM fungal communities in invaded sites differ from those in adjacent non-invaded sites (Mummey & Rillig, 2006), but the existence of such a mechanism should ideally be tested using experimental methods (Zhang et al., 2010). Our ability to manipulate AM fungal communities is, however, still limited because the majority of these fungal taxa are not cultivable, and we are currently unable to selectively eliminate particular non-sporulating AM fungi from natural soils. CONCLUSIONS Information about the natural distribution patterns of AM fungi remains scarce. Our study, using massively parallel 454 sequencing, is the first large-scale survey of natural AM fungal communities associated with a single host-plant species in its native, invasive and experimentally introduced ranges. During the timeframe of this study, the introduced palm sprouted successfully and was not limited by a lack of AM fungal symbionts colonizing its roots. The results are in accordance with our general hypothesis that alien plants, which are themselves typically generalists, predominantly find their AM fungal partners among the widely distributed generalist AM fungal taxa present in a novel habitat. In particular, AM fungi partnering the alien palm were predominantly those that had a wide geographical range and were locally present in the roots of a wide range of hosts. However, more large-scale studies crossing continents, biomes, ecosystems and host-plant species are required in order to describe the biogeography of AM fungi adequately. Such knowledge is essential for understanding the role of soilborne symbionts such as AM fungi in plant distribution and invasion processes. With new-generation sequencing technologies becoming increasingly available, the practical barriers to such endeavours are rapidly disappearing. ACKNOWLEDGEMENTS This research was funded by the European Commission within the FP 6 Integrated Project ALARM ‘Assessing LArge scale environmental Risks for biodiversity with tested Methods’ (GOCE-CT-2003-506675), by the Estonian Science Foundation grants 7371, 7366, 7738, SF0180098s08 (University of Tartu), an Enterprise Estonia grant EU 27552 (BiotaP LLC), a Marie Curie European Reintegration Grant within the 7th European Community Framework Programme (GLOBAM, PERG03-GA-2008-231034) and by the European Regional Development Fund (Centre of Excellence FIBIR). M. Metsis was partially supported by a grant from Tallinn University of Technology. Bioinformatics analysis was supported by the BiotaP LLC. Sampling in China by H.B. was financed by BEFChina, funded by the German Science Foundation (DFG FOR 891/1). H.B. is indebted to the staff of the Gutianshan National Nature Reserve. 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(2010) Positive feedback between mycorrhizal fungi and plants influences plant invasion success and resistance to invasion. PLoS ONE, 5, e12380. SUPPORTING INFORMATION Additional Supporting Information may be found in the online version of this article: Appendix S1 Glomeromycota sequences in the roots of Trachycarpus fortunei at the studied sites. Appendix S2 Venn diagram showing the number of Glomeromycota virtual taxa in the current study that are unique to and shared between different ranges. As a service to our authors and readers, this journal provides supporting information supplied by the authors. Such materials are peer-reviewed and may be re-organized for online delivery, but are not copy-edited or typeset. Technical support issues arising from supporting information (other than missing files) should be addressed to the authors. Journal of Biogeography 38, 1305–1317 ª 2011 Blackwell Publishing Ltd Invasive plants associate with ubiquitous arbuscular mychorrhizal fungi BIOSKETCH The research programme of M. Moora, J. Davison, M. Öpik, A. Vanatoa, E. Vanatoa and M. Zobel addresses local and global diversity patterns of glomeromycotan fungi using molecular markers. The study was conducted in the ALARM field-site network, which was established as a platform for integrated research on large-scale risks to biodiversity. Author contributions: G.R.W., S.B., M.Ö., M.Z. and M. Moora conceived the research; S.B., R.B., H.B., I.K., W.E.K., A.R., J.C.S, C.W and M. Moora collected the data; M.Ö., M. Metsis, E.V. and M.T. performed the molecular analyses; J.D., M.Ö., A.V., M. Metsis and M. Moora analysed the data; and M. Moora led the writing. Editor: Şerban Procheş Journal of Biogeography 38, 1305–1317 ª 2011 Blackwell Publishing Ltd 1317
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