Hereditas 143: 84 90 (2006) Escape from an evolutionary dead end: a triploid clone of Gyrodactylus salaris is able to revert to sex and switch host (Platyhelminthes, Monogenea, Gyrodactylidae) MAREK S. ZIE˛TARA1,3, JUSSI KUUSELA2,3 and JAAKKO LUMME3 1 Gdańsk University Biological Station, Laboratory of Comparative Biochemistry, Gdańsk-Sobieszewo, Poland National Veterinary and Food Research Institute, Oulu Regional Unit, Finland 3 Department of Biology, University of Oulu, Oulu, Finland 2 Zie˛tara, M. S., Kuusela J. and Lumme, J. 2006. Escape from an evolutionary dead-end: a triploid clone of Gyrodactylus salaris is able to revert to sex and switch host (Platyhelminthes, Monogenea, Gyrodactylidae). * Hereditas 143: 84 90. Lund, Sweden. eISSN 1601-5223. Received April 18, 2006. Accepted May 2, 2006 Diploid parthenogenesis, with rare sex, is considered as the basic mode of reproduction among the hermaphroditic and viviparous Gyrodactylus. A particular strain of the monogenean parasite Gyrodactylus salaris (RBT clone) was recognized by an invariable, unique mitochondrial DNA haplotype in rainbow trout (Oncorhynchus mykiss ) farms. The RBT clone was shown to be triploid and asexual by analyzing a 493 bp sequence of a nuclear DNA marker. Three alleles were present as heterozygous in all 237 individuals sampled in years 2001 2005 from five isolated Finnish farms. The triploid clone probably originated from a diploid oocyte fertilized by a non-self hermaphrodite, most probably in a fish farm. Identical mitochondrial COI gene (1606 bp) was also found in G. salaris parasites on landlocked salmon (Salmo salar ) in two rivers draining to the lake Kuitozero, Russian Karelia. In the river Pisto, the clone was triploid, but the diagnostic ‘‘short’’ nuclear allele of the RBT clone was replaced by an allele typical for salmon specific parasites in the Lake Onega. The clone in the river Kurzhma was diploid, having lost the ‘‘short’’ allele, but still heterozygous for the other two alleles of the RBT clone. Evidently, the triploid parthenogenetic RBT clone had produced diploid oocytes, when (as a female) stimulated by a non-self mate in the new environment. The genetic reorganization coincided with a switch to the salmon host. Participation of triploids into the gene pool of the species is rarely reported in animals, and the triploidy is generally considered as an irreversible dead-end of the evolution. Liberalism in ploidy level may significantly add to the evolutionary options available for a parasite in ever-changing environments. Marek Zie˛tara, Department of Biology, University of Oulu, POB 3000, FIN-90014 Oulu, Finland. E-mail: zietara@biotech. univ.gda.pl The role of sex in evolution is a rich source of theory and speculation. There are less asexual than sexual organisms, and a mixed strategy seems to be optimal. Several animals exploit seasonal or otherwise adaptive cyclic parthenogenesis, being then usually diploids. However, many forms of parthenogenesis are correlated with elevated ploidy, and then the clones are usually considered evolutionary dead-ends: the meiosis of triploids never succeeds, and the clone is ultimately excluded from the gene pool and further evolution (BELL 1982; SUOMALAINEN et al. 1987). Our interest in the topic originates from the other direction. While attempting to solve a question: why are there so many speciation-associated host switching events in the evolution of the freshwater fish parasite genus Gyrodactylus, we arrived to the question of the roles of parthenogenetic propagation and sexual recombination. Special emphasis is put on pathogenic salmon parasite Gyrodactylus salaris. Very few Gyrodactylus species have been studied in detail with respect to the reproductive mode. All Gyrodactylus are viviparous, giving birth to a fullgrown progeny, which is already ‘‘pregnant’’. Most, if not all species are hermaphroditic, but the first progeny is expected to be produced asexually, as a twin of the mother, and the subsequent few, by automictic parthenogenesis (CABLE and HARRIS 2002). Gyrodactylus salaris is a polytypic species, in the sense that the species is difficult to define. The internal transcribed spacer (ITS) regions of the nuclear ribosomal genes are nearly uniform in parasites on different hosts, grayling (Thymallus thymallus ), salmon (Salmo salar ), Arctic char (Salvelinus alpinus ) and rainbow trout (Oncorhynchus mykiss ) (CUNNINGHAM 1997; CABLE et al. 1999; ZIE˛TARA and LUMME 2002; ZIE˛TARA et al. 2002; LINDENSTRØM et al. 2003). By analyzing mitochondrial DNA sequences (MEINILÄ et al. 2002), Gyrodactylus salaris was divided into seven evolutionary lineages or clades (HANSEN et al. 2003, 2004; MEINILÄ et al. 2004). Five of the mtDNA clades were specific for grayling (Thymallus thymallus ). One variable mitochondrial clade of G. salaris was found to be specific to Baltic salmon and native in the entire Baltic Basin. Several identifiable strains belonging to this clade Hereditas 143 (2006) were causing the Atlantic Ocean and White Sea gyrodactylosis epidemics (MEINILÄ et al. 2004). The seventh mitochondrial clade of G. salaris was different from the others, by being monomorphic with respect to the mtDNA, even though it had diverged from the assumed common ancestor as early as the other lineages (MEINILÄ et al. 2004). All other mtDNA clades were variable, reflecting the accumulation of mutations since the glacial displacement of the hosts and the switch to salmon. The monomorphic mitochondrial clade was common in rainbow trout farms in Finland, Denmark and Sweden, but it was also found in some populations of salmon: in Lierelva, Drammen and Laerdalselven in Norway (HANSEN et al. 2003), and in the Pistojoki river (lake Kuitozero, Russian Karelia), where it was suggested to be introduced via rainbow trout farms (MEINILÄ et al. 2004). Here, we put forward a hypothesis about the origin of this fish farm specific strain (from hereafter, RBT clone) of G. salaris. The clone was observed to be triploid, which is the first case among Gyrodactylus. We also analyzed the derived parasite populations on salmon in Russian Karelia, carrying identical mitochondrial haplotype, and demonstrated that the triploid RBT clone has been able to reversion and had produced diploid eggs. Asexual triploids are usually dead ends in the evolution, but the RBT clone has been capable to recombination. The observations also contribute to our understanding of the mode of speciation in this genus. The history of RBT clone contains host switching events. The original switch to rainbow trout included the triploidization, and the two derived clones found on salmon were produced by genomic reorganization via diploid eggs. MATERIAL AND METHODS The rainbow trout parasites studied were from five fish farms in northern Finland and collected during a study on the temporal dynamics of the parasite infection in years 2001, 2003 and 2005. Because the Gyrodactylus salaris parasites from all farms were genetically identical (n/237), the exact locations and names of the fish farming companies are omitted. For a detailed account of the distribution of the parasite G. salaris (and G. lavareti ) in salmonid farms in northern Finland, the reader is referred to KOSKI and MALMBERG (1995). In Russian Karelia, the salmon parasites in two spawning rivers of the landlocked salmon population in Kuitozero were studied. In 2001, the parasites from the river Pisto were analyzed by mtDNA and they were observed to belong to the rainbow trout specific Escape from an evolutionary dead-end 85 mitochondrial clade (MEINILÄ et al. 2004). A known upstream fish farm in Finnish side of the border (KOSKI and MALMBERG 1995) was concluded as the source of infection. In 2005, the two spawning rivers Kurzhma and Pisto were sampled and the parasites analyzed by the new nuclear marker in addition to mtDNA. Comparative data of nuclear markers was obtained from a Gyrodactylus salaris clone in the Baltic river Tornio, where the parasite is native and nearly harmless. Molecular methods Single specimens of G. salaris were digested in a solution consisting of 0.45% Tween, 0.45% Igepal and 60 mg ml1 proteinase K in 1/concentrated PCR buffer. Digestion was carried out in a PCR machine for 25 min at 658C followed by inactivation of Proteinase K for 10 min at 958C and cooling at 48C. Two ml of such digestions were used as templates for PCR amplification. The partial sequence of the mitochondrial cytochrome c oxidase subunit I (COI) gene of G. salaris was studied like in MEINILÄ et al. (2002, 2004). However, the length of the deposited sequence is now 1606 base pairs (accession number of the RBT clone mtDNA AF540750, the Pisto salmon clone AF479750 and the Kurzhma salmon clone DQ517533). The fragment was amplified with newly designed primers: forward FCox5 (5?-TACTTTGGATCATAAGCGCAT-3?) and reverse 16SR (5?CATTTAATCATGATGCAAAAGG-3?). The 20 ml PCR reaction consisted of 1/PCR buffer, 0.2 mM dNTPs, 2 mM MgCl2, 1 mM of each primer, 0.5 U of Fermentas’ Taq DNA polymerase and 2 ml of template prepared as described above. The PCR program was run as follows: 948C for 3 min, 38 cycles (948C for 40 s, 508C for 30 s and 728C for 1.5 min), 728C for 7 min, and final cooling to 48C. A nuclear single copy DNA marker was studied utilizing four sets of primers. In initial experiments we used the degenerate primers designed to amplify the G. salaris b-tubulin gene (COLLINS et al. 2004): BT1 (5?-RTYCTWGTBGAYCTHGAACC-3?) and BT2R (5?-GRATCCABTCNACRAARTAA-3?). In addition to the target sequence (not considered here), these primers weakly amplified two extra fragments of 552 and 529 bp long nuclear DNA in farm strains of G. salaris. To improve the amplification, new internal primers were designed, InsF (5?-GATCTGCAATTCATCCTAAT-3?) and the reverse InsR (5?-TACAATTCGACCAAGGGTAG-3?). They amplify shorter pieces (493 and 470 bp) of the same DNA fragments. We also designed selective forward primers to amplify 86 M. S. Zie˛tara et al. the ‘‘long’’ and ‘‘short’’ allele separately: FBl (5?GCCCTTCCTATAACTCAAAAGAT-3?) and FBs (5?-GCCCTTCCTATAACTCAAAAGAA-3?). These primers, combined with the reverse InsR primer, amplify 435 and 412 bp fragments of ‘‘long’’ and ‘‘short’’ alleles respectively, which still span all the nucleotide variation observed in the original fragment. The 20 ml reactions consisted of 1 / PCR buffer, 0.2 mM dNTPs, 2 mM MgCl2, 1 mM of each primer, 1 U of Fermentas’ DNA Taq polymerase and 2 ml of template prepared as above. The PCR program was run as follows: 948C for 3 min, 42 cycles (948C for 40 s, 508C for 30 s and 728C for 1 min), 728C for 7 min, and cooling to 48C. Finally, for screening a large number of farm parasite specimens we developed primers to amplify a short segment of the DNA marker to be able to separate the size difference between the ‘‘short’’ and ‘‘long’’ alleles after primary PCR. These primers are: forward FB (5?-GCCCTTCCTATAACTCAAAA-3?) and reverse RB (5?-CTGAACGAGACCGAAAAATG), and the bimodal product is /200 bp long (Fig. 1). For 20 ml PCR reaction, the ingredients are as follows: 1 / PCR buffer, 0.2 mM dNTPs, 2 mM MgCl2, 1 mM of each primer, 0.5 U of Fermentas’ DNA Taq polymerase and 2 ml of template prepared as described above. The program: 948C for 3 min, 30 cycles (948C for 40 s, 508C for 30 s and 728C for 30 s), 728C for 7 min, and cool it to 48C. The PCR product is enough to visualize the long and short alleles on 2% agarose gel (Fig. 1). This procedure thus identifies the triploid RBT clone of G. salaris conveniently by one step PCR and agarose electrophoresis. To confirm the genotyping made by selective and specific primers, all alleles were cloned after PCR by proofreading Phusion polymerase by Novagen pSTBlue-1 Perfectly Blunt† cloning kit following the Hereditas 143 (2006) manufacturer’s instructions. From five to ten positive colonies of each nuclear haplotype were sequenced. Sequencing was based on Big Dye Terminator Cycle Sequencing kit protocol and the ABI 3730 DNA Analyzer (Applied Biosystems, Hitachi, Japan). RESULTS A new nuclear single copy DNA marker The primers developed for nuclear marker amplified supposedly noncoding, but non-repetitive DNA, with CG content as low as 33.9%. The segment showed no BLAST hits longer than /15 bp. It was confirmed that the PCR product was not from fish tissues. The nuclear marker was named as anonymous DNA marker 1 (ADNAM1). For naming the alleles, the variable sites were utilized (Table 1), and the phenotypes can be named by applying the system used for ambiguous nucleotides in gene sequencing. Thus, the phenotype of RBT farm clone is TMRCRWWT, the phenotype of Pisto clone is TMRCRWAT, and that of Kurzhma, TMRCAWAT. The haplotype (allele) sequences were deposited in GenBank under accession numbers: RBT farm clone (DQ436477-DQ436479) and Pisto (DQ471291-DQ471293). The Kurzhma phenotype was identical to Tornionjoki phenotype already deposited in GenBank (DQ468129-DQ468130). In Table 1, the haplotype names needed for GenBank are also shown (the list of variable nucleotides is not a valid name for a GenBank entry). These names (WS1, BS1, BS4, BS8) were not used here for any other purposes. The four alleles of the ADNAM1 locus found in Gyrodactylus salaris in this study are described in the Table 1. They were characterised by five variable nucleotides sites, one deletion of 23 bp, and also by the selective primers BT1 and BT2R of COLLINS et al. Fig. 1A-B. ADNAM1 locus amplified with primers FB and RB, designed to separate the ‘‘short’’ and ‘‘long’’ alleles, and to diagnose the RBT clone by one step PCR. The size of the DNA bands in the 2% agarose gel are 191 bp and 168 bp. (A) Lane 1: MW standard 191 bp. Lanes 2 10: direct PCR by FB and RB of the diploid G. salaris from river Tornio. Lanes 11 20: triploid G. salaris from rainbow trout farm, amplified first by selective "old" primers and then secondarily by FB and RB. (B) Direct PCR of RBT clone by FB and RB primers. Lane 1: MW standard 191-168 bp, lanes 2 20: triploid G. salaris. The long band is about twice as strong as the short. Escape from an evolutionary dead-end Hereditas 143 (2006) 87 Table 1. Variable sites of the four ADNAM1 alleles in rainbow trout farm type and in the clones in Kuitozero of Gyrodactylus salaris. The numbering is based on the long sequences deposited in GenBank. The invariable nucleotides in the allele names are reserved for predictable future expansion of the data. Allele name old TAGCAAAT TCACGTATold TCACATATold del23 -TCACGTTTold 56 78 214 245 302 316 317 old* Accession no. GenBank name / / / del A C C C G A A A A G A G A T T T A A A T / / / / DQ436479 DQ471292 DQ436478 DQ436477 WS1 BS1 BS4 BS8 *old/indicates that the allele is amplified by primers of COLLINS et al. (2004). (2004), which amplify only one of the ‘‘long’’ alleles in the RBT clone, and the ‘‘short’’. This allowed us to sequence the two ‘‘long’’ alleles separately, leading to the haplotype (allele) description presented in Table 1. We also cloned all the alleles several times. We have named the alleles so that the system will be consistent with further observations concerning the predicted wider collection of strains of G. salaris. In this system, the ‘‘long’’ alleles of the RBT clone are TCACATATold and TAGCAAATold, and the ‘‘short’’ allele del23 -TCACGTTTold. The new allele found in the river Pisto clone is TCACGTATold. Rainbow trout specific Gyrodactylus salaris By utilizing the FB and RB primers for PCR, and electrophoresis in 2% agarose, we screened 237 Gyrodactylus salaris specimens from five different rainbow trout farms in northern Finland. The samples were from years 2001, 2004 and 2005. When applied after primary amplification by BT1 and BT2R, the secondary PCR by FB RB pair produced two bands 191 bp and 168 bp of equal brightness (Fig. 1A) from all farm specimens. When FB and RB primers were used for the primary PCR, rainbow trout farm parasites invariably produced two electrophoretic bands, the slower one (191 bp) appearing much brighter as the faster (168 bp). All G. salaris specimens studied from five different rainbow trout farms were identical in the non-selective short fragment test (Fig. 1B). Parasites from the river Tornio population always produced only the longer segment (Fig. 1A). We analyzed sequences from 22 farm specimens of G. salaris. When sequenced from the 3?end until the deletion, the direct sequencing of the triploid clone produced a phenotype TMRCRWWT. The two ‘‘long’’ alleles (Table 1) were also found in the parasites on wild Baltic salmon from the Tornio river. The directly sequenced nuclear phenotype of the Tornio mitochondrial clade Tornio TA was invariably TMRCAWAT (n/46), and the separated alleles TCACATATold and TAGCAAATold were also cloned. The salmon parasites in the Lake Kuitozero, Russian Karelia In the spawning rivers Pisto and Kurzhma, of the landlocked salmon of Lake Kuitozero, Russian Karelia, Gyrodactylus salaris was first observed in 2001. The rivers were sampled again in 2005. In the river Pisto, out of 40 salmon, 14 carried parasites (prevalence 35%), between 6 to 39 individual worms per fish. In Kurzhma, the infection by G. salaris was even weaker (13 worms on 6 out of 38 fish), and the salmon juveniles carried also some specimens of Gyrodactylus aphyae (N /2) and G. lucii (N /2), parasites of minnow and pike, respectively. The 1606 bp long mitochondrial sequences of the Gyrodactylus salaris specimens in both rivers were exactly identical to that of the RBT clone (n/4). However, the nuclear ADNAM1 of G. salaris in Kurzhma (n /6) was not identical with RBT clone. The phenotype in Kurzhma was TMRCAWAT, and the genotype was ascertained to be TCACATATold/ TAGCAAATold. The ‘‘short’’ allele of the RBT clone was not present. The ambiguous peaks of the variable sites in direct sequencing were of equal intensity, not suggesting cryptic triploidy. We have to conclude that the clone was diploid. In the river Pisto, the G. salaris phenotype read by direct sequencing was TMRCRWAT (n /13), and the genotype consisted of three alleles (TCACGTATold/ TCACATATold/TAGCAAATold). Two alleles of this triploid clone were the same as in the RBT clone and in Kurzhma, but the allele TCACGTATold was a new one, not found in rainbow trout farms. DISCUSSION Systematically, G. salaris belongs to the subgenus Limnonephrotus (MALMBERG 1970, ZIE˛TARA and LUMME 2004), and to the species group wageneri, characterized by frequent long distance host switches 88 M. S. Zie˛tara et al. to new fish families (ZIe˛TARA and LUMME 2002). The mechanism of this innovative host switching ability deserves an explanation. The results of this paper may offer a key to explaining some parts of this: the RBT clone on a non-native host was observed to be triploid hybrid and supposedly asexual. When the maternal lineage had switched back to salmon in the Lake Kuitozero, we could demonstrate a temporary reversion to sexuality, and one derived clone was diploid. Is it possible that the whole wageneri group is a flock of apparently asexual clones, which use sex when there is an opportunity to real recombination, and adaptive novelty? The rainbow trout farm clone of Gyrodactylus salaris is different? The Gyrodactylus specialists MALMBERG and MALM(1986) and MO (1991) (reviewed recently in CUNNINGHAM et al. 2003) have always maintained that the rainbow trout farm type of G. salaris can be separated from other strains by morphology or morphometrics. As long as the type was recognized only in rainbow trout farms, this suggestion remained both true and unfalsifiable. The results of this study support this idea, because the RBT clone observed is monoclonal and invariable. Here we demonstrated that the rainbow trout farm specific RBT clone of G. salaris is a triploid monophyletic clone, carrying a specific mtDNA. Among the diverse forms of reproduction among animals, it is usual that triploids are asexuals due to unavoidable meiotic problems (BELL 1982; SUOMALAINEN et al. 1987). Currently, we do not know, where is the mother of the RBT clone. We do not know the father either, but it is probably to be found among the parthenogenetic diploid Baltic G. salaris strains. Both long ADNAM1 alleles of the RBT clone were found in Tornio strain of G. salaris (Kuusela et al., unpubl.). The monomorphic mitochondrial haplotype specific for the RBT clone was also found in parasites on salmon populations in Drammen, Lierelva, and Laerdalselven in Norway (HANSEN et al. 2003). In the results of CUNNINGHAM et al. (2003), the IGS of the parasites from Laerdalselva and Lierelva clustered with the haplotypes from the main G. salaris epidemic, not showing the diversity of IGS molecular clones observed in the parasites from rainbow trout farm. This makes the Laerdalselva and Lierelva G. salaris the prime suspects as the mother. Using the marker developed here the maternity case could possibly be solved if the real parental strains can be found and included among the suspects. Because the Norwegian BERG Hereditas 143 (2006) parasite strains were not available for this study, the question remains open. Origin of Gyrodactylus salaris in Kuitozero. A virgin fertilized? While we have to leave the hypothesis on the origin of the RBT clone await testing of the suspected mothers, we succeeded to detect an unsolved paternity case among the progeny of RBT clone. The mitochondrial DNA of the Gyrodactylus salaris in both spawning rivers of Kuitozero showed that the parasites were maternally derived from the RBT clone. This was reported already from the 2001 observations in Pisto (MEINILÄ et al. 2004). However, the nuclear DNA analysis here showed that the parasites in Pisto and Kurzhma were not specimens of original farm clone. While the farm type was triploid and carries alleles [TAGCAAATold/ TCACATATold/(del23 -TCACGTTTold], the direct sequencing of Kuitozero parasites gave a good sequence phenotype TMRCAWAT from both directions, indicating that the allele with the 23 bp deletion is not there. Further analysis by selective primers and molecular cloning revealed that the Pisto parasite was triploid [TCACATATold/TCACGTATold/ TAGCAAATold], and Kurzhma most probably diploid [TCACGTATold/TAGCAAATold]. Consequently, it is obvious that the RBT clone is the mother of the Kuitozero parasites. We suggest the following a posteriori scenario. The RBT clone of G. salaris arrived to Kuitozero from an upstream fish farm in Finnish side of the border (KOSKI and MALMBERG 1995). In Kuitozero, it mated with a hypothetical native (or introduced) G. salaris strain TMRCRWAT (/TCACGTATold/ TAGCAAATold), giving rise to the triploid type now found in Pisto. This suspected father genotype is found in the Lake Onega and in the river Keret, White Sea (Kuusela et al., unpubl.). Triploids are usually expected to be fecund but sterile. Among 237 specimens collected from five disconnected farms during three years, no segregating individuals were found. This sampling represents a rather large number of generations: the generation length of Gyrodactylus salaris is estimated to be 4 to 8 days, depending on season (CABLE and HARRIS 2002). So, either the segregation never occurs, or all segregated progeny is lethal. While the RBT clone is monoclonal, arising from a single mating event, it has good reasons to avoid sexual reproduction, as long as it is alone. The heterozygosity obviously is advantageous, and it can best be maintained by self-incompatibility (PECK and WAXMAN 2000). But the move from farm to a new lake may have offered an alternative. Hereditas 143 (2006) Currently, we have not recorded suitable mates in Kuitozero (by extremely limited faunistic sampling). In Pisto, there is G. salaris in grayling (MEINILÄ et al. 2004), but in upstream waters we have observed only homozygous TAGCAAATold phenotypes (unpubl.). The G. salaris strains in the lake Onega and in the river Keret fulfill the characteristics of the ‘‘suspected father’’, having the allele TCACGTAT old needed to transform the RBT clone to the strain in Pisto (Kuusela et al., unpubl.). However, Kuitozero is biogeographically on the White Sea basin, and G. salaris strains specific to salmon have never been observed as native in this basin (MEINILÄ et al. 2004). The possibility remains that the hybridization of RBT clone with the paternal strain has occurred elsewhere than in the lake Kuitozero. The origin of diploid Kurzhma strain from the triploid mother in the above situation is not unexpected. If the triploid female was induced to produce diploid oocytes, to be fertilized by a compatible nonself hermaphrodite, then some of the diploid oocytes may well have utilized the default developmental program of Gyrodactylus, and developed further without fertilization In their comprehensive review of reproduction in Gyrodactylus, CABLE and HARRIS (2002) mentioned that there are no known polyploids in Gyrodactylus. The RBT clone of G. salaris is now the first triploid observed. Considering the general systematic distribution of polyploidy and parthenogenesis among the animals (SUOMALAINEN et al. 1987), we assume that there will be more diversity in the sexuality and reproductive systems of Gyrodactylus than has been described. The escape from triploid asexuality to other forms of reproduction has been suggested in plants, e.g. in dandelions (Taraxacum ) (MENKEN et al. 1995), but it is very rare in animals. In planarian Schmidtea polychroa, D’SOUSA et al. 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