Tree Physiology 24, 347–353 © 2004 Heron Publishing—Victoria, Canada Variations in dark respiration and mitochondrial numbers within needles of Pinus radiata grown in ambient or elevated CO2 partial pressure KEVIN L. GRIFFIN,1,2 O. ROGER ANDERSON,1 DAVID T. TISSUE,3 MATTHEW H. TURNBULL4 and DAVID WHITEHEAD5 1 Lamont-Doherty Earth Observatory of Columbia University, Palisades, NY 10964, USA 2 Corresponding author ([email protected]) 3 Department of Biology, Texas Tech University, Lubbock, TX 79409, USA 4 Department of Plant and Microbial Sciences, University of Canterbury, Christchurch, New Zealand 5 Landcare Research, P.O. Box 69, Lincoln 8152, New Zealand Received April 3, 2003; accepted September 5, 2003; published online January 2, 2004 Summary Within-leaf variations in cell size, mitochondrial numbers and dark respiration rates were compared in the most recently expanded tip, the mid-section and base of needles of Pinus radiata D. Don trees grown for 4 years in open-top chambers at ambient (36 Pa) or elevated (65 Pa) carbon dioxide partial pressure ( p(CO2)a). Mitochondrial numbers and respiratory activity varied along the length of the needle, with the highest number of mitochondria per unit cytoplasm and the highest rate of respiration per unit leaf area at the base of the needle. Regardless of the location of the cells (tip, middle or basal sections), needles collected from trees grown in elevated p(CO2)a had nearly twice the number of mitochondria per unit cytoplasm as those grown in ambient p(CO2)a. This stimulation of mitochondrial density by growth at elevated p(CO2)a was greater at the tip of the needle (2.7 times more mitochondria than in needles grown in ambient CO2) than at the base of the needle (1.7 times). The mean size of individual mitochondria was unaffected either by growth at elevated p(CO2)a or by position along the needle. Tree growth at elevated p(CO2)a had a variable effect on respiration per unit leaf area, significantly increasing respiration in the tip of the needles (+25%) and decreasing respiration at the mid-section and base of the needles (–14% and –25%, respectively). Although a simple relationship between respiration per unit leaf area and mitochondrial number per unit cytoplasm was found within each CO2 treatment, the variable effect of growth at elevated p(CO2)a on respiration along the length of the needles indicates that a more complex relationship must determine the association between structure and function in these needles. Keywords: peroxisomes, transfusion tissue, ultrastructure. Introduction Although not often studied, there is significant within-leaf variation in physiological activity (Ma and Dwyer 1997, Mott and Buckley 2000, Zangerl et al. 2002). If there is significant within-leaf variation in respiratory activity or associated structural features, it could be important to leaf-level carbon exchange in the context of efforts to quantify and understand plant responses to global environmental change, particularly variations in the partial pressure of atmospheric carbon dioxide ( p(CO2)a). A significant effort has been made to better understand, quantify and predict the effects of plant growth at elevated p(CO2)a on physiological processes regulating the exchange of carbon between the atmosphere and the biosphere (Griffin and Seemann 1996, Drake et al. 1997, Norby et al. 1999). Information ranging from the ecosystem to molecular scales exists, yet little is known at the scale of cellular ultrastructure. In particular, we have limited knowledge about the effects of growth at elevated p(CO2)a on mitochondria (but see Robertson et al. 1995, Griffin et al. 2001a). Regulation of the number of mitochondria in cells is not well understood (Logan and Leaver 2000), but may depend on cell type (Bowsher and Tobin 2001) and developmental stage (Thompson et al. 1998). Although the number of mitochondria varies from hundreds to thousands (Buchanan et al. 2000), it has often been assumed that the number of mitochondria per unit cytoplasmic volume is invariant (Buchanan et al. 2000). However, when comparing plants grown in elevated versus ambient p(CO2)a, Robertson et al. (1995) reported a threefold increase in the number of mitochondria in developing leaf cells grown in elevated p(CO2)a just 12 h post-mitosis in 7-day-old Triticum aestivum L. plants. To assess the generality of this response, we previously surveyed eight species (representing seven plant families, including both angiosperm and conifer species) grown in several different growth facilities with different CO2-dosing technologies. We found that growth at elevated p(CO2)a increased the number of mitochondria per unit cell area by 1.3 to 2.4 times compared with the number in 348 GRIFFIN, ANDERSON, TISSUE, TURNBULL AND WHITEHEAD control plants grown in lower p(CO2)a (Griffin et al. 2001a). Clearly, plant growth at elevated p(CO2)a can have important effects on the fine structure of leaf cells, but the link to physiological function is less clear. Mitochondria contain respiratory machinery and are a primary site of ATP, organic acid and amino acid production via the citric acid cycle and associated electron transfer chain. Hence, we may expect that changes in the number or structure of this essential organelle have important related implications for cellular function. In our previous study (Griffin et al. 2001a), we found an increase in mitochondrial number in leaves of species grown in elevated p(CO2)a, but a decrease in the rate of mass-based dark respiration. Although both shortand long-term respiratory responses to elevated CO2 partial pressure have been demonstrated (Poorter et al. 1992, Gonzalez-Meler et al. 1996, Curtis and Wang 1998, Drake et al. 1999), the precise mechanisms have not been identified, and the magnitude and even the direction of leaf-level responses are quite variable. Therefore, given the uncertainty in the mechanisms regulating leaf-level respiration, we are unable to predict the response of respiration at the ecosystem scale to global environmental change. There is a paucity of information on the functional anatomy of conifer needles, especially physiological correlates of fine structure at different stages of needle development. Yet Bowsher and Tobin (2001) argue that developmental changes within plant tissues offer a practical system to study the relationship between mitochondrial form and function. In this study we used such a system, measuring variation in cell size, mitochondrial numbers and dark respiration rates within different aged portions of Pinus radiata D. Don needles (the most recently expanded tip, the mid-section and the base of the needle) from trees grown in ambient or elevated p(CO2)a. Pine needles elongate from the tip over a period of several weeks to months, creating a gradient in cell ages and, therefore, in fine structure and physiological function (Esau 1977). Previously, we reported that the mid-section of P. radiata needles responded similarly to that of all other species examined, with 2.1 times more mitochondria and 14% lower rates of respiration per unit leaf area when trees were grown in elevated p(CO2)a compared with trees grown in ambient p(CO2)a (Griffin et al. 2001a). Here, we present new data collected from the tip and basal sections of the same needles with the aim of elucidating how variations in p(CO2)a affect cellular fine structure and respiratory activity during needle development. The axial tissue gradient in developing pine needles provides an excellent system to examine possible interactive effects of variations in p(CO2)a on foliage structure and physiology during needle ontogeny. Considering structure and function independently, we hypothesized that the largest number of mitochondria per unit area of cytoplasm, the lowest respiration rates per unit leaf area (i.e., lowest metabolic activity) and the least sensitivity to growth in elevated p(CO2)a (i.e., because of lower rates of respiration and photosynthesis) would occur at the base of the needle (i.e., most mature cells). Materials and methods Growing conditions Our experimental site was established in 1994 at Christchurch, New Zealand (43°32′ S, 172°42′ E, elevation 9 m a.s.l.). Sixteen circular open-top chambers (3.6 m tall, 4.6 m diameter, see Heagle et al. (1989)) were established on a recently stabilized free-draining dune sand. The design and performance of the chambers are described elsewhere (Whitehead et al. 1995). The CO2 supplied to the chambers was obtained by separation from biogas using a three-stage filtration process at a nearby wastewater treatment facility (Rogers and Whitehead 1998). Experimental p(CO2)a treatments were monitored and controlled automatically, and applied continuously for the entire life of the trees. Three Pinus radiata trees were planted in each half chamber. All experimental measurements were made on trees grown from clonal, tissue-cultured stock at ambient (36.2 ± 0.37 Pa) or elevated (65.4 ± 0.69 Pa) p(CO2)a. These clones were propagated from the bud of a 4-year-old tree. During the tissue culture and subsequent rooting processes, the trees were maintained in the appropriate ambient and elevated p(CO2)a treatments. The physiological, biochemical and morphological measurements presented here were made during the early growing season (November 1996) when the trees were 4 years old and 2–3 m high. The full complement of biochemical, physiological and morphological measurements, which was made on fully exposed, north-facing branches using fully expanded needles produced the previous spring (“1-year-old needles,” age 14 months), has been described previously by Griffin et al. (2000). Needles from two fascicles were measured from the appropriate cohort on secondary branches of single trees from six chambers per CO2 treatment. Respiration measurements Needles were sampled at the tip (most distal 20 mm of the needle from the fascicle), the mid-section (central 20 mm segment) and the base (20 mm directly above the fascicle sheath). Respiration was measured on segments of needles prior to fixation for transmission electron microscopy. Needle segments, about 5 mm long, were placed in the cuvette and depletion of oxygen was assayed with a Clark-type liquid-phase oxygen electrode (Rank Brothers, Cambridge, U.K.) in the dark at 25 °C in 20 mM MES buffer (pH 6.0) that had been equilibrated in ambient air (Azcón-Bieto et al. 1994). Measurement of the numbers and size of mitochondria Samples from the same needles as those used for the respiration measurements were cut into 1-mm slices and fixed immediately in 2% glutaraldehyde (w/v) in 0.05 M potassium phosphate buffer, pH 7.2. Samples were post-fixed in phosphate-buffered 2% osmium tetroxide (w/v) for 2 h at 5 °C, dehydrated in a graded acetone series, embedded in catalyzed epon (TAAB resin, Energy Beam Sciences, Agawam, MA), polymerized at 75 °C, and sectioned with a Porter-Blum MT-2 ultramicrotome fitted with a diamond knife. Sections were collected on copper grids, post-stained with Reynolds lead ci- TREE PHYSIOLOGY VOLUME 24, 2004 FUNCTIONAL ANATOMY AND PHYSIOLOGY OF NEEDLE ONTOGENY trate and observed with the aid of a Philips 201 transmission electron microscope (Eindhoven, the Netherlands) operated at 60 kV. To obtain an estimate of the number of mitochondria per unit area of cytoplasm lining the cell walls in the images of the relatively polygonal Pinus cells, we made measurements directly on TEM negatives of cell images recorded at 1000×. We counted the number of mitochondria within a rectangular area enclosing the layer of cytoplasm lining the cell wall (length times thickness of the enclosed layer of cytoplasm expressed in mm). The area of the cytoplasm was measured with a magnifying reticle with a 0.1-mm scale. The mean density of mitochondria (number per µm2) was calculated by converting the millimeter measurements to micrometer units, based on the magnification of the TEM images. At least 50 measurements of cytoplasmic area (using 50 negatives) were made for each of the six treatments for a total of 300 measurements. Measurement error was calculated by making two separate measurements of the number of mitochondria per unit area in the same set of TEM negatives (but in a different sequence each time to ensure greater objectivity) for a total of 50 measurements. The percent error (difference between replicate means divided by the grand mean multiplied by 100) was 3.5%. The length (major axis) and width (minor axis) of individual mitochondria were also measured directly on the negatives of electron micrographs with a magnifying reticle with a 0.1-mm scale. This was done to determine if the sizes of the mitochondria in each segment of the pine needle were similar. At least 30 mitochondria were measured in each of the six treatment samples, giving a total of 180 measurements. Mean cell size was also measured to determine if there were differences among the three segments of the pine needle. Cell sizes were measured directly on the transmission electron microscope screen at a magnification of 1500×. The measurements were made to a precision of 1 mm on the screen grid (equivalent to 0.7 µm actual dimension of the cell when adjusted for magnification). Thirty-five to 55 cells were measured for length and width (major and minor axes) for each of the six treatments. In each of the above measurements, representative chlorophyllous cells for the six treatments were examined in ultrathin sections obtained from the periphery of the P. radiata needle in a region immediately beneath the epidermis. Statistical analyses Respiration measurements were subjected to analysis of variance (ANOVA) using SPSS (Version 10.0.2, SPSS, Chicago, IL). Comparisons among means for CO2 treatments were made by least-significant difference (LSD). For mitochondrial numbers, one-tailed t-tests of mean differences were performed with a STATVIEW SE + graphics computer application (Abacus Concepts, Berkeley, CA). Results Tree growth in elevated p(CO2)a had no effect on the timing of needle growth or on final needle length, but it had a substantial 349 effect on within-leaf cell fine structure. Cells in the apical tissue of needles tended to be smaller with a thicker layer of cytoplasm and relatively smaller vacuole (Figure 1), whereas cells in the mid-region and base of needles were larger with a thin layer of cytoplasm and increasingly larger vacuoles. Transfusion, or laterally conducting, tissue was commonly found in the base of the needle, so care was taken to sample only representative chlorophyllous cells. Tips of needles tended to have half the number of mitochondria per unit area found in midsections of the same needles (Table 1). The basal sections of needles, with large vacuoles and a small amount of cytoplasm, had the highest number of mitochondria per unit area, with more than 7.5 times the number found in the tips of needles of trees grown in ambient p(CO2)a, and 4.5 times the number in the tips of needles of trees grown in elevated p(CO2)a. Growth in elevated p(CO2)a resulted in a significant increase in the number of mitochondria per unit area of living cytoplasm at all three positions in the needles (tip, mid-section and base). We note that the mitochondrial counts from the mid-section of these needles were previously reported in the general survey of mitochondrial responses from a variety of plant species (Griffin et al. 2001a). The stimulation of mitochondrial numbers per unit area by growth in elevated p(CO2)a was 59% higher at the tip of the needle (2.7 times) than at the base of the needle (1.7 times) with an overall mean increase of 1.9 times. The mean size of individual mitochondria was unaffected by either growth in elevated p(CO2)a or needle position (Table 2). The shape of individual mitochondria and the general cellular appearance were also unaffected. On average, the length of the major axis of the cross section of individual mitochondria was 0.75 µm, and the length of the minor axis was 0.49 µm. Individual cell sizes increased significantly from the tip to the base of the needle, but were not influenced by the CO2 treatment (Table 3). Mean cell sizes were 23.8 µm for the major axis and 15.9 µm for the minor axis, and were about 35% larger at the base than at the tip. Peroxisomes were counted in the needle tips, and no significant effect of CO2 treatment was found. For trees grown in ambient p(CO2)a, the mean number of peroxisomes per unit area of living cytoplasm was 1.3 ± 0.7 µm –2, whereas for trees grown in elevated p(CO2)a, the mean number of peroxisomes per unit area of living cytoplasm was 1.9 ± 0.6 µm –2 (P > 0.05). The ratio of peroxisomes to mitochondria was greatly reduced, from 0.19 to 0.10, by growth in elevated p(CO2)a. The rate of respiration was lowest in the tip of the needles and highest at the base (Table 4). The effect of elevated p(CO2)a on respiration was variable, increasing respiration significantly at the tip of the needles, and decreasing it at the mid-section and base of the needles. As a result, the difference in respiration between the tip and base of the needles was larger for trees growing in the ambient treatment (220% increase) compared with trees growing in the elevated treatment (93%). Mean rates of respiration were reduced by 12%, from 0.43 ± 0.02 µmol m –2 s –1 for trees growing in the ambient treatment to 0.38 ± 0.02 µmol m –2 s –1 for trees growing in the elevated treatment. As with the mitochondrial counts, respiration rates from the mid-section of the needles have been re- TREE PHYSIOLOGY ONLINE at http://heronpublishing.com 350 GRIFFIN, ANDERSON, TISSUE, TURNBULL AND WHITEHEAD Figure 1. Transmission electron micrographs of ultra-thin sections of Pinus radiata needles taken from the tip (A and B, the most distal 20-mm of the needle from the fascicle), middle (C and D, the central 20 mm segment) and base (E and F, 20 mm directly above the fascicle sheath). Samples shown are from the ambient CO2 (A, C, and E) and elevated CO2 (B, D, and F) treatments. The cells in the apical tissue tended to be smaller with a thicker layer of cytoplasm and relatively smaller vacuole (V). Cells in the mid-region and base were larger with a thin layer of cytoplasm and increasingly larger vacuoles (e.g., E). Mitochondria (arrows) were more abundant in needles from trees grown in elevated CO2 partial pressure compared with those grown in ambient CO2 partial pressure. Bar = 5 µm. ported previously (Griffin et al. 2001a). Discussion We found clear differentiation of cellular fine structure and respiratory activity between the newly produced tip and older base of needles of P. radiata. In addition, both structure and respiration varied with growth p(CO2)a, and there was a strong interaction between p(CO2)a and needle position. It has been recognized that direct physiological responses to plant growth at elevated p(CO2)a likely have important structural analogs at multiple spatial scales (Pritchard et al. 1999). However, to our Table 1. Numbers of mitochondria per unit area of cytoplasm in needles collected from Pinus radiata trees grown in ambient (36 Pa) or elevated (65 Pa) CO2 partial pressure. Needles were sampled at the tip (most distal 20 mm of the needle from the fascicle) the middle (central 20-mm segment) and the base (20 mm directly above the fascicle sheath). Sample location Number of mitochondria per 100 µm2 of cytoplasm P Ambient (A) (mean ± SEM) Elevated (E) (mean ± SEM) Ratio (E/A) Tip Middle Base 7.0 ± 1.0 14.0 ± 1.4 53.1 ± 7.8 19.0 ± 2.0 30.0 ± 1.8 88.1 ± 11.5 2.7 2.1 1.7 Mean 24.7 45.7 1.9 TREE PHYSIOLOGY VOLUME 24, 2004 < 0.001 < 0.001 < 0.010 FUNCTIONAL ANATOMY AND PHYSIOLOGY OF NEEDLE ONTOGENY 351 Table 2. Length (major axis) and width (minor axis) of mitochondria in cells from the tip (most distal 20 mm of the needle from the fascicle), middle (central 20-mm segment) and base (20 mm directly above the fascicle sheath) of needles of Pinus radiata trees grown in ambient (36 Pa) or elevated (65 Pa) CO2 partial pressure. Trees grown in ambient and elevated CO2 partial pressure were not significantly different based on unpaired t-tests (df = 58). Sample location Mitochondria dimensions (µm) Length Width Ambient (mean ± SEM) Elevated (mean ± SEM) Ambient (mean ± SEM) Elevated (mean ± SEM) Tip Middle Base 0.79 ± 0.21 0.75 ± 0.26 0.70 ± 0.11 0.80 ± 0.24 0.81 ± 0.27 0.66 ± 0.06 0.45 ± 0.08 0.50 ± 0.11 0.51 ± 0.06 0.45 ± 0.10 0.50 ± 0.10 0.53 ± 0.03 Mean 0.75 0.76 0.49 0.49 Table 3. Length (major axis) and width (minor axis) of cells from the tip (most distal 20 mm of the needle from the fascicle), middle (central 20-mm segment) and base (20 mm directly above the fascicle sheath) of needles of Pinus radiata trees grown in ambient (36 Pa) or elevated (65 Pa) CO2 partial pressure. Cells from trees grown in ambient and elevated CO2 partial pressure were not significantly different based on unpaired t-tests (df = 58). Sample location Cell dimensions (µm) Length Width Ambient (mean ± SEM) Elevated (mean ± SEM) Ambient (mean ± SEM) Elevated (mean ± SEM) Tip Middle Base 20.3 ± 0.82 23.0 ± 1.30 29.0 ± 2.37 19.0 ± 1.02 21.0 ± 1.10 30.3 ± 1.29 14.3 ± 0.46 16.0 ± 0.94 18.4 ± 1.23 15.0 ± 0.60 15.5 ± 0.61 16.2 ± 0.87 Mean 24.1 23.4 16.2 15.6 knowledge, variation within needles in ultrastructure and respiration in response to p(CO2)a has not been reported previously. Gymnosperm needles are differentiated into vascular tissue containing xylem and phloem, photosynthetic mesophyll cells, a hypodermis and an epidermis. In addition to these major cell types, a layer of transfusion tissue surrounds the vascular tissue and is enclosed by an endodermis. In the sections examined, the basal portions of the needles were composed primarily of transfusion tissue. These cells tended to be large, with large vacuoles and a relatively small amount of cytoplasm. As a result, there were relatively few mitochondria per unit total cell area. The morphology and abundance of the transfusion tissue suggest that the primary function of the base of the needle is the lateral transport of material between the vasculature and other parts of the needle (Esau 1977). For the comparison of mitochondrial numbers, only chlorophyllous cells obtained from the periphery of the P. radiata needle in a region immediately beneath the epidermis were examined. Despite relatively few mitochondria per unit total cell area, cells from the basal sections of the needles had the highest numbers of mitochondria per unit area of living cytoplasm. However, as shown in Figures 1E and 1F, the cytoplasm of the basal cells is quite thin compared with the more apical portions of the needle, so the density per unit area of cytoplasm must be interpreted with this fine structural feature in mind. In con- Table 4. Rates of respiration in needles from Pinus radiata trees grown in ambient (36 Pa) or elevated (65 Pa) CO2 partial pressure. Needles were sampled at the tip (most distal 20 mm of the needle from the fascicle) the middle (central 20-mm segment) and base (20 mm directly above the fascicle sheath). Sample location Respiration rate (µmol O2 m –2 s –1) Ambient (A) (mean ± SEM) Elevated (E) (mean ± SEM) Ratio (E/A) P Tip Middle Base 0.24 ± 0.03 0.35 ± 0.03 0.77 ± 0.12 0.30 ± 0.04 0.30 ± 0.03 0.58 ± 0.09 1.25 0.86 0.75 < 0.01 < 0.01 < 0.01 Mean 0.43 ± 0.02 0.38 ± 0.02 0.88 TREE PHYSIOLOGY ONLINE at http://heronpublishing.com 352 GRIFFIN, ANDERSON, TISSUE, TURNBULL AND WHITEHEAD trast, the majority of the cells examined from the tip of the needles were significantly smaller, had relatively more living cytoplasm, smaller vacuoles and a lower density of mitochondria per unit area of living cytoplasm. Compared with the base, the apex of the needle would be the most illuminated portion, and most closely coupled to p(CO2)a, both factors that could maximize photosynthetic carbon gain. The mid-sections of the needles were intermediate to the tip and the base, being slightly larger and more mature than the tip, but not dominated by transfusion tissue as in the basal sections. Mid-section cells also had intermediate mitochondrial densities per unit area of living cytoplasm, nearly twice that of the cells from the tip of the needles but only a third or less of that at the base of the needles. Along the length of the needles, respiration per unit area increased from the tip to the base, a pattern that was generally consistent with the trend in mitochondrial numbers per unit cytoplasm. One possible explanation for the higher rate of respiration in the base of the needle compared with the tip or mid-section may be related to phloem loading via the transfusion tissue (Bouma et al. 1995). Other possible explanations for the higher respiration rate at the base of the needle could be related to higher nitrogen concentrations leading to higher maintenance respiration (Ryan 1995), higher cell number per unit leaf area, or higher concentrations of respiratory substrates (Griffin et al. 2001b). More work is needed to identify the cause of the higher respiration rates at the base of the needles. Variation in respiration as a function of position within the needle has practical implications for the measurement of respiration in coniferous species such as P. radiata, as variation in the location of the sampled tissue would lead to substantial differences in the estimated rate of respiration. Regardless of the location of the cells (tip, mid or basal sections), needles collected from trees grown in elevated p(CO2)a had more than twice the number of mitochondria per unit area of cytoplasm as needles grown in ambient p(CO2)a. This result is consistent with that of other studies on plants grown in ambient and elevated p(CO2)a (Robertson et al. 1995, Lewis et al. 2000, Griffin et al. 2001a, Tissue et al. 2002). Plant mitochondria are involved in several metabolic processes in addition to respiration such as the glyoxylate cycle, photorespiration, nitrogen assimilation, alternative oxidase activity and the maintenance of the stromal redox state. Together with the chloroplasts and peroxisomes, mitochondria participate in the glycolate pathway initiated by the oxygenation of RuBP during photorespiration. We found that the number of peroxisomes per unit area was unaffected by growth in elevated p(CO2)a, and thus the ratio of peroxisomes to mitochondria decreased. Clearly, the influence of both respiratory and non-respiratory metabolic processes on the response of leaf fine structure to p(CO2)a treatments requires further study. Although it is convenient to consider respiration as the active physiological process in the absence of photosynthesis (i.e., in the dark), it is well known that respiration is required for photosynthetic carbon fixation (Kromer 1995, Mackenzie and McIntosh 1999). Furthermore, 25 to 50% of the redox equivalents produced in plant mitochondria are oxidized else- where in the cell (Hanning and Heldt 1993). Therefore, Griffin et al. (2001a) suggested that increased mitochondrial respiration during the day could meet the increased daytime energy demands of faster-growing, more metabolically active cells, and therefore partially account for the increased number of mitochondria. Although we did not measure daytime respiration rates in our needle sections, previous estimates of daytime respiration based on the analysis of photosynthetic response curves to intercellular CO2 partial pressure at this field site consistently indicated that daytime respiration rates are higher for needles grown in elevated p(CO2)a than in ambient p(CO2)a (Turnbull et al. 1998, Griffin et al. 2000, Tissue et al. 2001), although differences between the CO2 treatments are not always statistically significant. In conclusion, mitochondrial number per unit area of living cytoplasm was significantly higher and nighttime respiration rates were significantly lower in Pinus radiata needles from trees grown in elevated p(CO2)a than in needles from trees grown in ambient p(CO2)a. In addition, both mitochondrial numbers per unit area of cytoplasm and respiratory activity varied along the length of the needle, with the highest number of mitochondria per unit area of cytoplasm and the highest rate of respiration per unit leaf area at the base of the needle. The data support our hypothesis that the highest number of mitochondria per unit area of cytoplasm occurs at the base of the needle (i.e., most mature cells), but the data do not support our hypothesis that the lowest rate of respiration occurs at the base of the needle (i.e., lowest cellular growth rate). This may be because we did not account for the abundance of transfusion tissue in the base of the needles, and the physiological costs of phloem loading. We suggest that, although the functional anatomy of conifer needles has rarely been studied, it provides an excellent system for examining the effects of variations in atmospheric p(CO2)a on foliage structure and physiology during ontogeny. We have demonstrated that important physiological and structural differences exist within leaves, as well as between leaves, trees and forests. Acknowledgments We thank G.D. Rogers, T.M. McSeveny, J.E. Hunt and J.N. Byers for their expert help in constructing and maintaining the open-top chamber field site. We also thank Dr. Hans Lambers for improving this manuscript. This research was supported by the National Science Foundation, Division of International Programs grant INT-9515449 to DTT and KLG, the National Science Foundation grant IBN 9603940 to KLG and the Packard Foundation Grant DLP 998306 to KLG and ORA. Majority funding for this field site was provided by the New Zealand Foundation for Research, Science and Technology. The research is part of a larger Project 1105 of the Core Research Program for the GTCE (Global Change and Terrestrial Ecosystems) component of IGBP (International Geosphere–Biosphere Program). We acknowledge the generous loan of the open-top chambers from USDA Forest Service, North Carolina, USA and assistance provided by Christchurch City Council, New Zealand Lotteries Grants Board and Ansett New Zealand and Forest Research. This is LamontDoherty Earth Observatory contribution number 6537. 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