Ondřej Koukol
Podklady pro habilitační řízení
Ondřej Koukol – citační ohlas
Celkem zaznamenáno 175 citací na Web of Science (WoS), 152 bez autocitací, (stav k 1. 6. 2016).
H-index: 9
Průměrně 6,73 citací na článek
* mimo WoS
Ondřej Koukol
Podklady pro habilitační řízení
Ondřej Koukol
Podklady pro habilitační řízení
Crous P.W., Summerell B.A., Shivas R.G., Burgess T.I., Decock C.A., Dreyer L.L., Granke L.L., Guest D.I.,
Hardy G.E.S.J., Hausbeck M.K., Hueberli D., Jung T., Koukol O., Lennox C.L., Liew E.C.Y., Lombard L.,
McTaggart A.R., Pryke J.S., Roets F., Saude C., Shuttleworth L.A., Stukely M.J.C., Vanky K., Webster
B.J., Windstam S.T., Groenewald J.Z. (2012): Fungal Planet description sheets: 107–127. Persoonia 28:
138–182.
Suwannarach, Nakarin; Kumla, Jaturong; Lumyong, Saisamorn (2016): Pseudoplagiostoma dipterocarpi sp nov., a
new endophytic fungus from Thailand. MYCOSCIENCE. 57: 118-122
Yang, X.; Balci, Y.; Brazee, N. J.; Loyd, A. L.; Hong, C. X. (2016): A unique species in Phytophthora clade 10,
Phytophthora intercalaris sp nov., recovered from stream and irrigation water in the eastern USA.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 66: 845855
Gazis, Romina; Kuo, Alan; Riley, Robert; Labutti, Kurt; Lipzen, Anna; Lin, Junyan; Amirebrahimi, Mojgan;
Hesse, Cedar N.; Spatafora, Joseph W.; Henrissat, Bernard; Hainaut, Matthieu; Grigoriev, Igor V.; Hibbett,
David S. (2016): The genome of Xylona heveae provides a window into fungal endophytism. FUNGAL
BIOLOGY. 120: 26-42
Crous, Pedro W.; Schumacher, Rene K.; Wingfield, Michael J.; Lombard, Lorenzo; Giraldo, Alejandra;
Christensen, Martha; Gardiennet, Alain; Nakashima, Chiharu; Pereira, Olinto L.; Smith, Alexander J.;
Groenewald, Johannes Z. (2015): Fungal Systematics and Evolution: FUSE 1. SYDOWIA. 67: 81-118
Ondřej Koukol
Podklady pro habilitační řízení
Thompson, S. M.; Tan, Y. P.; Shivas, R. G.; Neate, S. M.; Morin, L.; Bissett, A.; Aitken, E. A. B. (2015): Green
and brown bridges between weeds and crops reveal novel Diaporthe species in Australia. PERSOONIA. 35:
39-49
Piatek, Marcin; Lutz, Matthias; Yorou, Nourou S. (2015): A molecular phylogenetic framework for
Anthracocystis (Ustilaginales), including five new combinations (inter alia for the asexual Pseudozyma
flocculosa), and description of Anthracocystis grodzinskae sp nov.. MYCOLOGICAL PROGRESS. 14: 88
Kondratyuk, T. O.; Kondratyuk, S. Y.; Morgaienko, O. O.; Khimich, M. V.; Beregova, T. V.; Ostapchenko, L. I.
(2015): PSEUDONADSONIELLA BRUNNEA (MERIPILACEAE, AGARICOMYCOTINA), A NEW
BROWN YEAST-LIKE FUNGUS PRODUCING MELANIN FROM THE ANTARCTIC; WITH NOTES
ON NOMENCLATURE AND TYPE CONFUSION OF NADSONIELLA NIGRA. Acta Botanica
Hungarica. 57: 291-320
Nagel, Jan H.; Slippers, Bernard; Wingfield, Michael J.; Gryzenhout, Marieka (2015): Multiple Phytophthora
species associated with a single riparian ecosystem in South Africa. MYCOLOGIA. 107: 915-925
Burgess, Treena I. (2015): Molecular Characterization of Natural Hybrids Formed between Five Related
Indigenous Clade 6 Phytophthora Species. PLOS ONE. 10: Lione, G.; Giordano, L.; Sillo, F.; Gonthier, P. (2015): Testing and modelling the effects of climate on the
incidence of the emergent nut rot agent of chestnut Gnomoniopsis castanea. PLANT PATHOLOGY. 64:
852-863
Bakhshi, Mounes; Arzanlou, Mahdi; Babai-Ahari, Asadollah; Groenewald, Johannes Z.; Crous, Pedro W. (2015):
Is morphology in Cercospora a reliable reflection of generic affinity?. PHYTOTAXA. 213: 22-34
Crous, P. W.; Wingfield, M. J.; Guarro, J.; Hernandez-Restrepo, M.; Sutton, D. A.; Acharya, K.; Barber, P. A.;
Boekhout, T.; Dimitrov, R. A.; Duenas, M.; Dutta, A. K.; Gene, J.; Gouliamova, D. E.; Groenewald, M.;
Lombard, L.; Morozova, O. V.; Sarkar, J.; Smith, M. Th.; Stchigel, A. M.; Wiederhold, N. P.; Alexandrova,
A. V.; Antelmi, I.; Armengol, J.; Barnes, I.; Cano-Lira, J. F.; Castaneda Ruiz, R. F.; Contu, M.; Courtecuisse,
Pr. R.; da Silveira, A. L.; Decock, C. A.; de Goes, A.; Edathodu, J.; Ercole, E.; Firmino, A. C.; Fouriem, A.;
Fournier, J.; Furtado, E. L.; Geering, A. D. W.; Gershenzon, J.; Giraldo, A.; Gramaje, D.; Hammerbacher,
A.; He, X. -L.; Haryadi, D.; Khemmuk, W.; Kovalenko, A. E.; Krawczynski, R.; Laich, F.; Lechat, C.;
Lopes, U. P.; Madrid, H.; Malysheva, E. F.; Marin-Felix, Y.; Martin, M. P.; Mostert, L.; Nigro, F.; Pereira,
O. L.; Picillo, B.; Pinho, D. B.; Popov, E. S.; Pelaez, C. A. Rodas; Rooney-Latham, S.; Sandoval-Denis, M.;
Shivas, R. G.; Silva, V.; Stoilova-Disheval, M. M.; Telleria, M. T.; Ullah, C.; Unsickern, S. B.; van der
Merwe, N. A.; Vizzini, A.; Wagner, H. -G.; Wong, P. T. W.; Wood, A. R.; Groenewald, J. Z. (2015): Fungal
Planet description sheets: 320-370. PERSOONIA. 34: 167-266
Maharachchikumbura, Sajeewa S. N.; Hyde, Kevin D.; Jones, E. B. Gareth; McKenzie, Eric H. C.; Huang, ShiKe; Abdel-Wahab, Mohamed A.; Daranagama, Dinushani A.; Dayarathne, Monika; D'souza, Melvina J.;
Goonasekara, Ishani D.; Hongsanan, Sinang; Jayawardena, Ruvishika S.; Kirk, Paul M.; Konta, Sirinapa;
Liu, Jian-Kui; Liu, Zuo-Yi; Norphanphoun, Chada; Pang, Ka-Lai; Perera, Rekhani H.; Senanayake, Indunil
C.; Shang, Qiuju; Shenoy, Belle Damodara; Xiao, Yuanpin; Bahkali, Ali H.; Kang, Jichuan; Somrothipol,
Sayanh; Suetrong, Satinee; Wen, Tingchi; Xu, Jianchu (2015): Towards a natural classification and backbone
tree for Sordariomycetes. FUNGAL DIVERSITY. 72: 199-301
Aylward, Janneke; Dreyer, Leanne L.; Steenkamp, Emma T.; Wingfield, Michael J.; Roets, Francois (2015):
Long-distance dispersal and recolonization of a fire-destroyed niche by a mite-associated fungus. FUNGAL
BIOLOGY. 119: 245-256
Dar, Mudasir Ahmad; Rai, Mahendra (2015): Gnomoniopsis smithogilvyi, a canker causing pathogen on Castanea
sativa: First report. MYCOSPHERE. 6: 327-336
Dennert, Francesca G.; Broggini, Giovanni A. L.; Gessler, Cesare; Storari, Michelangelo (2015): Gnomoniopsis
castanea is the main agent of chestnut nut rot in Switzerland. PHYTOPATHOLOGIA MEDITERRANEA.
54: 199-211
Crous, P. W.; Wingfield, M. J.; Schumacher, R. K.; Summerell, B. A.; Giraldo, A.; Gene, J.; Guarro, J.;
Wanasinghe, D. N.; Hyde, K. D.; Camporesi, E.; Jones, E. B. Gareth; Thambugala, K. M.; Malysheva, E. F.;
Malysheva, V. F.; Acharya, K.; Alvarez, J.; Alvarado, P.; Assefa, A.; Barnes, C. W.; Bartlett, J. S.;
Blanchette, R. A.; Burgess, T. I.; Carlavilla, J. R.; Coetzee, M. P. A.; Damm, U.; Decock, C. A.; den
Breeyen, A.; de Vries, B.; Dutta, A. K.; Holdom, D. G.; Rooney-Latham, S.; Manjon, J. L.; Marincowitz, S.;
Ondřej Koukol
Podklady pro habilitační řízení
Mirabolfathy, M.; Moreno, G.; Nakashima, C.; Papizadeh, M.; Fazeli, S. A. Shahzadeh; Amoozegar, M. A.;
Romberg, M. K.; Shivas, R. G.; Stalpers, J. A.; Stielow, B.; Stukely, M. J. C.; Swart, W. J.; Tan, Y. P.; van
der Bank, M.; Wood, A. R.; Zhang, Y.; Groenewald, J. Z. (2014): Fungal Planet description sheets: 281-319.
PERSOONIA. 33: 212-292
Bakhshi, Mounes; Arzanlou, Mahdi; Babai-Ahari, Asadollah; Groenewald, Johannes Z.; Crous, Pedro W. (2014):
Multi-gene analysis of Pseudocercospora spp. from Iran. PHYTOTAXA. 184: 245-264
Aylward, Janneke; Dreyer, Leanne L.; Steenkamp, Emma T.; Wingfield, Michael J.; Roets, Francois (2014):
Panmixia defines the genetic diversity of a unique arthropod-dispersed fungus specific to Protea flowers.
ECOLOGY AND EVOLUTION. 4: 3444-3455
Yang, Xiao; Richardson, Patricia A.; Hong, Chuanxue (2014): Phytophthora xstagnum nothosp nov., a New
Hybrid from Irrigation Reservoirs at Ornamental Plant Nurseries in Virginia. PLOS ONE. 9: e103450
Crous, P. W.; Shivas, R. G.; Quaedvlieg, W.; van der Bank, M.; Zhang, Y.; Summerell, B. A.; Guarro, J.;
Wingfield, M. J.; Wood, A. R.; Alfenas, A. C.; Braun, U.; Cano-Lira, J. F.; Garcia, D.; Marin-Felix, Y.;
Alvarado, P.; Andrade, J. P.; Armengol, J.; Assefa, A.; den Breeyen, A.; Camele, I.; Cheewangkoon, R.; De
Souza, J. T.; Duong, T. A.; Esteve-Raventos, F.; Fournier, J.; Frisullo, S.; Garcia-Jimenez, J.; Gardiennet, A.;
Gene, J.; Hernandez-Restrepo, M.; Hirooka, Y.; Hospenthal, D. R.; King, A.; Lechat, C.; Lombard, L.;
Mang, S. M.; Marbach, P. A. S.; Marincowitz, S.; Marin-Felix, Y.; Montano-Mata, N. J.; Moreno, G.; Perez,
C. A.; Sierra, A. M. Perez; Robertson, J. L.; Roux, J.; Rubio, E.; Schumacher, R. K.; Stchigel, A. M.; Sutton,
D. A.; Tan, Y. P.; Thompson, E. H.; van der Linde, E.; Walker, A. K.; Walker, D. M.; Wickes, B. L.; Wong,
P. T. W.; Groenewald, J. Z. (2014): Fungal Planet description sheets: 214-280. PERSOONIA. 32: 184-306
Aylward, Janneke; Dreyer, Leanne L.; Steenkamp, Emma T.; Wingfield, Michael J.; Roets, Francois (2014):
Development of polymorphic microsatellite markers for the genetic characterisation of Knoxdaviesia proteae
(Ascomycota: Microascales) using ISSR-PCR and pyrosequencing. MYCOLOGICAL PROGRESS. 13: 439444
Hu, Dian-Ming; Cai, Lei; Jones, E. B. Gareth; Zhang, Huang; Boonyuen, Nattawut; Hyde, Kevin D. (2014):
Taxonomy of filamentous asexual fungi from freshwater habitats, links to sexual morphs and their
phylogeny. FRESHWATER FUNGI: AND FUNGAL-LIKE ORGANISMS. : 109-131
Vannini, A.; Martignoni, D.; Bruni, N.; Tomassini, A.; Vettraino, A. M.; Caccia, R.; Speranza, S.; Paparatti, B.
(2014): New Notes on the Biology of the Chestnut Fungus Gnomoniopsis sp and Its Possible Use as a
Biocontrol Agent of Oriental Chestnut Gall Wasp. V INTERNATIONAL CHESTNUT SYMPOSIUM.
1019: 235-238
Crous, P. W.; Wingfield, M. J.; Guarro, J.; Cheewangkoon, R.; van der Bank, M.; Swart, W. J.; Stchigel, A. M.;
Cano-Lira, J. F.; Roux, J.; Madrid, H.; Damm, U.; Wood, A. R.; Shuttleworth, L. A.; Hodges, C. S.; Munster,
M.; de Jesus Yanez-Morales, M.; Zuniga-Estrada, L.; Cruywagen, E. M.; de Hoog, G. S.; Silvera, C.;
Najafzadeh, J.; Davison, E. M.; Davison, P. J. N.; Barrett, M. D.; Barrett, R. L.; Manamgoda, D. S.; Minnis,
A. M.; Kleczewski, N. M.; Flory, S. L.; Castlebury, L. A.; Clay, K.; Hyde, K. D.; Mausse-Sitoe, S. N. D.;
Chen, Shuaifei; Lechat, C.; Hairaud, M.; Lesage-Meessen, L.; Pawlowska, J.; Wilk, M.; SliwinskaWyrzychowska, A.; Metrak, M.; Wrzosek, M.; Pavlic-Zupanc, D.; Maleme, H. M.; Slippers, B.; Mac
Cormack, W. P.; Archuby, D. I.; Gruenwald, N. J.; Telleria, M. T.; Duenas, M.; Martin, M. P.; Marincowitz,
S.; de Beer, Z. W.; Perez, C. A.; Gene, J.; Marin-Felix, Y.; Groenewald, J. Z. (2013): Fungal Planet
description sheets: 154-213. PERSOONIA. 31: 188-296
Hyde, Kevin D.; Jones, E. B. Gareth; Liu, Jian-Kui; Ariyawansa, Hiran; Boehm, Eric; Boonmee, Saranyaphat;
Braun, Uwe; Chomnunti, Putarak; Crous, Pedro W.; Dai, Dong-Qin; Diederich, Paul; Dissanayake, Asha;
Doilom, Mingkhuan; Doveri, Francesco; Hongsanan, Singang; Jayawardena, Ruvishika; Lawrey, James D.;
Li, Yan-Mei; Liu, Yong-Xiang; Lucking, Robert; Monkai, Jutamart; Muggia, Lucia; Nelsen, Matthew P.;
Pang, Ka-Lai; Phookamsak, Rungtiwa; Senanayake, Indunil C.; Shearer, Carol A.; Suetrong, Satinee;
Tanaka, Kazuaki; Thambugala, Kasun M.; Wijayawardene, Nalin N.; Wikee, Saowanee; Wu, Hai-Xia;
Zhang, Ying; Aguirre-Hudson, Begoa; Alias, S. Aisyah; Aptroot, Andr; Bahkali, Ali H.; Bezerra, Jose L.;
Bhat, D. Jayarama; Camporesi, Erio; Chukeatirote, Ekachai; Gueidan, Cecile; Hawksworth, David L.;
Hirayama, Kazuyuki; De Hoog, Sybren; Kang, Ji-Chuan; Knudsen, Kerry; Li, Wen-Jing; Li, Xing-Hong;
Liu, Zou-Yi; Mapook, Ausana; McKenzie, Eric H. C.; Miller, Andrew N.; Mortimer, Peter E.; Phillips, Alan
J. L.; Raja, Huzefa A.; Scheuer, Christian; Schumm, Felix; Taylor, Joanne E.; Tian, Qing; Tibpromma,
Ondřej Koukol
Podklady pro habilitační řízení
Saowaluck; Wanasinghe, Dhanushka N.; Wang, Yong; Xu, Jian-Chu; Yacharoen, Supalak; Yan, Ji-Ye;
Zhang, Min (2013): Families of Dothideomycetes. FUNGAL DIVERSITY. 63: 1-313
Li, Wenhuan; Xiao, Yunxue; Wang, Chunsheng; Dang, Jiling; Chen, Chen; Gao, Liu; Batzer, Jean C.; Sun,
Guangyu; Gleason, Mark L. (2013): A new species of Devriesia causing sooty blotch and flyspeck on
Rubber Trees in China. MYCOLOGICAL PROGRESS. 12: 733-738
Wikee, S.; Lombard, L.; Nakashima, C.; Motohashi, K.; Chukeatirote, E.; Cheewangkoon, R.; McKenzie, E. H.
C.; Hyde, K. D.; Crous, P. W. (2013): A phylogenetic re-evaluation of Phyllosticta (Botryosphaeriales).
STUDIES IN MYCOLOGY. : 1-29
Elfar, Karina; Torres, Rene; Diaz, Gonzalo A.; Latorre, Bernardo A. (2013): Characterization of Diaporthe
australafricana and Diaporthe spp. Associated with Stem Canker of Blueberry in Chile. PLANT DISEASE.
97: 1042-1050
Quaedvlieg, W.; Verkley, G. J. M.; Shin, H. -D.; Barreto, R. W.; Alfenas, A. C.; Swart, W. J.; Groenewald, J. Z.;
Crous, P. W. (2013): Sizing up Septoria. STUDIES IN MYCOLOGY. : 307-390
Douanla-Meli, C.; Langer, E.; Mouafo, F. Talontsi (2013): Fungal endophyte diversity and community patterns in
healthy and yellowing leaves of Citrus limon. FUNGAL ECOLOGY. 6: 212-222
Nagel, Jan H.; Gryzenhout, Marieka; Slippers, Bernard; Wingfield, Michael J.; Hardy, Giles E. St. J.; Stukely,
Michael J. C.; Burgess, Treena I. (2013): Characterization of Phytophthora hybrids from ITS clade 6
associated with riparian ecosystems in South Africa and Australia. FUNGAL BIOLOGY. 117: 329-347
Jie, Chun-Yu; Zhou, Qing-Xin; Zhao, Wen-Sheng; Jiang, Yu-Lan; Hyde, Kevin D.; McKenzie, Eric H. C.; Wang,
Yong (2013): A new Myrmecridium species from Guizhou,China. MYCOTAXON. 124: 1-8
Gryzenhout, Marieka (2013): Other Cankers Caused by Cryphonectria and Sibling Species. INFECTIOUS
FOREST DISEASES. : 340-358
Hueberli, D.; Hardy, G. E. St J.; White, D.; Williams, N.; Burgess, T. I. (2013): Fishing for Phytophthora from
Western Australia's waterways: a distribution and diversity survey. AUSTRALASIAN PLANT
PATHOLOGY. 42: 251-260
Crous, P. W.; Shivas, R. G.; Wingfield, M. J.; Summerell, B. A.; Rossman, A. Y.; Alves, J. L.; Adams, G. C.;
Barreto, R. W.; Bell, A.; Coutinho, M. L.; Flory, S. L.; Gates, G.; Grice, K. R.; Hardy, G. E. St J.;
Kleczewski, N. M.; Lombard, L.; Longa, C. M. O.; Louis-Seize, G.; Macedo, F.; Mahoney, D. P.; Maresi,
G.; Martin-Sanchez, P. M.; Marvanova, L.; Minnis, A. M.; Morgado, L. N.; Noordeloos, M. E.; Phillips, A.
J. L.; Quaedvlieg, W.; Ryan, P. G.; Saiz-Jimenez, C.; Seifert, K. A.; Swart, W. J.; Tan, Y. P.; Tanney, J. B.;
Thu, P. Q.; Videira, S. I. R.; Walker, D. M.; Groenewald, J. Z. (2012): Fungal Planet description sheets: 128153. PERSOONIA. 29: 146-201
Žifčáková L., Dobiášová P., Kolářová Z., Koukol O., Baldrian P. (2011): Enzyme activities of fungi
associated with Picea abies needles. Fungal Ecology 4: 427-436
Osono, Takashi (2015): Decomposing ability of diverse litter-decomposer macrofungi in subtropical, temperate,
and subalpine forests. JOURNAL OF FOREST RESEARCH. 20: 272-280
Eichlerova, Ivana; Homolka, Ladislav; Zifcakova, Lucia; Lisa, LudmiIa; Dobiasova, Petra; Baldrian, Petr (2015):
Enzymatic systems involved in decomposition reflects the ecology and taxonomy of saprotrophic fungi.
FUNGAL ECOLOGY. 13: 10-22
Lin, Yonghui; He, Xingbing; Ma, Taowu; Han, Guomin; Xiang, Changguo (2015): Priority colonization of
Cinnamomum camphora litter by endophytes affects decomposition rate, fungal community and microbial
activities under field conditions. PEDOBIOLOGIA. 58: 177-185
*Prakash, C.P. ; Thirumalai, E; Govinda Rajulu, M.B.; Thirunavukkarasu, N.; Suryanarayanan T.S. (2016):
Ecology and diversity of leaf litter fungi during early-stage decomposition in a seasonally dry tropical forest.
FUNGAL ECOLOGY. 17: 103-113
Wang, Wenjie; Li, Yanhong; Wang, Huimei; Zu, Yuangang (2014): Differences in the Activities of Eight
Enzymes from Ten Soil Fungi and Their Possible Influences on the Surface Structure, Functional Groups,
and Element Composition of Soil Colloids. PLOS ONE. 9: -
Ondřej Koukol
Podklady pro habilitační řízení
*Valentín, L., Rajala, T., Peltoniemi, M., Heinonsalo, J., Pennanen, T., & Mäkipää, R. (2014). Loss of diversity in
wood-inhabiting fungal communities affects decomposition activity in Norway spruce wood. Frontiers in
Microbiology. 5: 230.
Stursova, Martina; Snajdr, Jaroslav; Cajthaml, Tomas; Barta, Jiri; Santruckova, Hana; Baldrian, Petr (2014):
When the forest dies: the response of forest soil fungi to a bark beetle-induced tree dieback. ISME
JOURNAL. 8: 1920-1931
Yuan, Zhilin; Chen, Lianqing (2014): The Role of Endophytic Fungal Individuals and Communities in the
Decomposition of Pinus massoniana Needle Litter. PLOS ONE. 9: e105911
*Osono, T (2014): Effects of litter type, origin of isolate, and temperature on decomposition of leaf litter by
microfungi. JOURNAL OF FOREST RESEARCH. 20: 77-84
Uroz, S.; Courty, P. E.; Pierrat, J. C.; Peter, M.; Buee, M.; Turpault, M. P.; Garbaye, J.; Frey-Klett, P. (2013):
Functional Profiling and Distribution of the Forest Soil Bacterial Communities Along the Soil
Mycorrhizosphere Continuum. MICROBIAL ECOLOGY. 66: 404-415
Voriskova, Jana; Baldrian, Petr (2013): Fungal community on decomposing leaf litter undergoes rapid
successional changes. ISME JOURNAL. 7: 477-486
Mathieu, Yann; Gelhaye, Eric; Dumarcay, Stephane; Gerardin, Philippe; Harvengt, Luc; Buee, Marc (2013):
Selection and validation of enzymatic activities as functional markers in wood biotechnology and fungal
ecology. JOURNAL OF MICROBIOLOGICAL METHODS. 92: 157-163
Persoh, Derek; Segert, Julia; Zigan, Anja; Rambold, Gerhard (2013): Fungal community composition shifts along
a leaf degradation gradient in a European beech forest. PLANT AND SOIL. 362: 175-186
Stursova, Martina; Zifcakova, Lucia; Leigh, Mary Beth; Burgess, Robert; Baldrian, Petr (2012): Cellulose
utilization in forest litter and soil: identification of bacterial and fungal decomposers. FEMS
MICROBIOLOGY ECOLOGY. 80: 735-746
Baldrian, Petr; Lindahl, Bjorn (2011): Decomposition in forest ecosystems: after decades of research still novel
findings. FUNGAL ECOLOGY. 4: 359-361
Koukol O., Novák F., Hrabal R. (2008): Composition of the organic phosphorus fraction in basidiocarps of
saprotrophic and mycorrhizal fungi. Soil Biology & Biochemistry. 40(9): 2464–2467
Saniewski, Michal; Zalewska, Tamara; Krasinska, Grazyna; Szylke, Natalia; Wang, Yuanzhong; Falandysz, Jerzy
(2016): Sr-90 in King Bolete Boletus edulis and certain other mushrooms consumed in Europe and China.
SCIENCE OF THE TOTAL ENVIRONMENT. 543: 287-294
Maciejczyk, Ewa; Wieczorek, Dorota; Zwyrzykowska, Anna; Halama, Marek; Jasicka-Misiak, Izabela; Kafarski,
Pawel (2015): Phosphorus Profile of Basidiomycetes. PHOSPHORUS SULFUR AND SILICON AND THE
RELATED ELEMENTS. 190: 763-768
Li, Meng; Hu, Zhengyi; Zhu, Xiaoqi; Zhou, Guohui (2015): Risk of phosphorus leaching from phosphorusenriched soils in the Dianchi catchment, Southwestern China. ENVIRONMENTAL SCIENCE AND
POLLUTION RESEARCH. 22: 8460-8470
Jiang, X.; Bol, R.; Willbold, S.; Vereecken, H.; Klumpp, E. (2015): Speciation and distribution of P associated
with Fe and Al oxides in aggregate-sized fraction of an arable soil. BIOGEOSCIENCES. 12: 6443-6452
Turner, Benjamin L.; Wells, Andrew; Condron, Leo M. (2014): Soil organic phosphorus transformations along a
coastal dune chronosequence under New Zealand temperate rain forest. BIOGEOCHEMISTRY. 121: 595611
Bucinova, Katarina; Janik, Rastislav; Jamnicka, Gabriela; Kuklova, Margita (2014): Accumulation and
bioconcentration factors of mineral macronutrients in representative species of macrofungi prevailing in
beech-dominated forests affected by air pollution. Czech Mycology. 66: 193-207
Reitzel, Kasper; Turner, Benjamin L. (2014): Quantification of pyrophosphate in soil solution by pyrophosphatase
hydrolysis. SOIL BIOLOGY & BIOCHEMISTRY. 74: 95-97
Cheesman, A. W.; Turner, B. L.; Reddy, K. R. (2014): Forms of organic phosphorus in wetland soils.
BIOGEOSCIENCES. 11: 6697-6710
Ondřej Koukol
Podklady pro habilitační řízení
Cade-Menun, Barbara; Liu, Corey W. (2014): Solution Phosphorus-31 Nuclear Magnetic Resonance
Spectroscopy of Soils from 2005 to 2013: A Review of Sample Preparation and Experimental Parameters.
SOIL SCIENCE SOCIETY OF AMERICA JOURNAL. 78: 19-37
Cheesman, Alexander W.; Rocca, James; Turner, Benjamin L. (2013): Phosphorus Characterization in Wetland
Soils by Solution Phosphorus-31 Nuclear Magnetic Resonance Spectroscopy. METHODS IN
BIOGEOCHEMISTRY OF WETLANDS. 10: 639-665
Cheesman, Alexander W.; Turner, Benjamin L.; Reddy, K. Ramesh (2012): Soil Phosphorus Forms along a
Strong Nutrient Gradient in a Tropical Ombrotrophic Wetland. SOIL SCIENCE SOCIETY OF AMERICA
JOURNAL. 76: 1496-1506
Turner, Benjamin L.; Engelbrecht, Bettina M. J. (2011): Soil organic phosphorus in lowland tropical rain forests.
BIOGEOCHEMISTRY. 103: 297-315
Bunemann, Else K.; Prusisz, Bartlomiej; Ehlers, Knut (2011): Characterization of Phosphorus Forms in Soil
Microorganisms. PHOSPHORUS IN ACTION: BIOLOGICAL PROCESSES IN SOIL PHOSPHORUS
CYCLING. 26: 37-57
Sundareshwar, P. V.; Richardson, C. J.; Gleason, Robert A.; Pellechia, Perry J.; Honomichl, Shawn (2009):
Nature versus nurture: Functional assessment of restoration effects on wetland services using Nuclear
Magnetic Resonance Spectroscopy. GEOPHYSICAL RESEARCH LETTERS. 36: L03402
Koukol O., Kolařík M., Kolářová Z., Baldrian P. (2012): Diversity of foliar endophytes in wind-fallen Picea
abies trees. Fungal Diversity 54(1): 69–77
*Hauptman, T; Piškur, B (2016): A new record of Rhizoctonia butinii associated with Picea glauca ‘Conica’ in
Slovenia. FOREST PATHOLOGY. doi: 10.1111/efp.12272
Zheng, You-Kun; Qiao, Xin-Guo; Miao, Cui-Ping; Liu, Kai; Chen, You-Wei; Xu, Li-Hua; Zhao, Li-Xing (2016):
Diversity, distribution and biotechnological potential of endophytic fungi. ANNALS OF MICROBIOLOGY.
66: 529-542
Jin, Hui; Yang, Xiaoyan; Lu, Dengxue; Li, Chunjie; Yan, Zhiqiang; Li, Xiuzhuang; Zeng, Liming; Qin, Bo
(2015): Phylogenic diversity and tissue specificity of fungal endophytes associated with the pharmaceutical
plant, Stellera chamaejasme L. revealed by a cultivation-independent approach. ANTONIE VAN
LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR
MICROBIOLOGY. 108: 835-850
Christian, Natalie; Whitaker, Briana K.; Clay, Keith (2015): Microbiomes: unifying animal and plant systems
through the lens of community ecology theory. FRONTIERS IN MICROBIOLOGY. 6: 869
Solberg, Svein; Aamlid, Dan; Tveito, Ole E.; Lystad, Sofus (2015): Increased needlefall and defoliation in
Norway spruce induced by warm and dry weather. BOREAL ENVIRONMENT RESEARCH. 20: 335-349
*Prihatini, I.; Glen, M.; Wardlaw, T.J.; Ratkowsky, D.A.; Mohammed, C.L. (2015): Needle fungi in young
Tasmanian Pinus radiata plantations in relation to elevation and rainfall. NEW ZEALAND JOURNAL OF
FORESTRY SCIENCE. 45: 25
Yuan, Zhilin; Chen, Lianqing (2014): The Role of Endophytic Fungal Individuals and Communities in the
Decomposition of Pinus massoniana Needle Litter. PLOS ONE. 9: e105911
Terhonen, Eeva; Kerio, Susanna; Sun, Hui; Asiegbu, Fred O. (2014): Endophytic fungi of Norway spruce roots in
boreal pristine mire, drained peatland and mineral soil and their inhibitory effect on Heterobasidion
parviporum in vitro. FUNGAL ECOLOGY. 9: 17-26
*Nicoletti, R;Fiorentino, A; Scognamiglio, M (2014): Endophytism of Penicillium Species in Woody Plants, THE
OPEN MYCOLOGY JOURNAL. 8: 1-26
Lawson, Sarah P.; Christian, Natalie; Abbot, Patrick (2014): Comparative analysis of the biodiversity of fungal
endophytes in insect-induced galls and surrounding foliar tissue. FUNGAL DIVERSITY. 66: 89-97
Vaz, Aline B. M.; Fontenla, Sonia; Rocha, Fernando S.; Brandao, Luciana R.; Vieira, Mariana L. A.; De Garcia,
Virginia; Goes-Neto, Aristoteles; Rosa, Carlos A. (2014): Fungal endophyte beta-diversity associated with
Myrtaceae species in an Andean Patagonian forest (Argentina) and an Atlantic forest (Brazil). FUNGAL
ECOLOGY. 8: 28-36
Ondřej Koukol
Podklady pro habilitační řízení
de Souza Sebastianes, Fernanda Luiza; Romao-Dumaresq, Aline Silva; Lacava, Paulo Teixeira; Harakava,
Ricardo; Azevedo, Joao Lucio; de Melo, Itamar Soares; Pizzirani-Kleiner, Aline Aparecida (2013): Species
diversity of culturable endophytic fungi from Brazilian mangrove forests. CURRENT GENETICS. 59: 153166
Vazquez de Aldana, Beatriz R.; Bills, Gerald; Zabalgogeazcoa, Inigo (2013): Are endophytes an important link
between airborne spores and allergen exposure?. FUNGAL DIVERSITY. 60: 33-42
*Kolařík, M; Stodůlková, E; Kubátová, A; Pažoutová S (2013) New endophytic species from the phloem of
broadleaf trees. In: Schneider C, Leifert C, Feldmann F (Eds), Endophytes for plant protection: the state of
the art, pp. 47-52
Zhang, Tao; Zhang, Yu-Qin; Liu, Hong-Yu; Wei, Yu-Zhen; Li, Hai-Long; Su, Jing; Zhao, Li-Xun; Yu, Li-Yan
(2013): Diversity and cold adaptation of culturable endophytic fungi from bryophytes in the Fildes Region,
King George Island, maritime Antarctica. FEMS MICROBIOLOGY LETTERS. 341: 52-61
Wijayawardene, Nalin N.; McKenzie, Eric H. C.; Chukeatirote, Ekachai; Wang, Yong; Hyde, Kevin D. (2012):
Coelomycetes. CRYPTOGAMIE MYCOLOGIE. 33: 215-244
Vohník M., Burdíková Z., Vyhnal A., Koukol O. (2011): Interactions between testate amoebae and
saprotrophic microfungi in a Scots pine litter microcosm. Microbial Ecology 61(3): 660–668
*Qina, Y; Man, B; Kosakyan, A; Larac, E; Gub, Y; Wang H.M.; Mitchell, EAD (2016) Nebela jiuhuensis nov. sp.
(Amoebozoa; Arcellinida; Hyalospheniidae): A New Member of the Nebela saccifera - equicalceus - ansata
Group Described from Sphagnum Peatlands in South-Central China. JOURNAL OF EUKARYOTIC
MICROBIOLOGY. doi:10.1111/jeu.12300
Vohnik, Martin; Borovec, Ondrej; Kolarik, Miroslav (2016): Communities of Cultivable Root Mycobionts of the
Seagrass Posidonia oceanica in the Northwest Mediterranean Sea Are Dominated by a Hitherto Undescribed
Pleosporalean Dark Septate Endophyte. MICROBIAL ECOLOGY. 71: 442-451
Shumilovskikh, Lyudmila S.; Schluetz, Frank; Achterberg, Inke; Kvitkina, Anna; Bauerochse, Andreas;
Leuschner, Hanns Hubert (2015): Pollen as nutrient source in Holocene ombrotrophic bogs. REVIEW OF
PALAEOBOTANY AND PALYNOLOGY. 221: 171-178
Reeder, William H. H.; Sanck, Jessica; Hirst, Marissa; Dawson, Scott C.; Wolfe, Gordon V. (2015): The Food
Web of Boiling Springs Lake Appears Dominated by the Heterolobosean Tetramitus thermacidophilus Strain
BSL. JOURNAL OF EUKARYOTIC MICROBIOLOGY. 62: 374-390
Clara Bruzone, M.; Fontenla, Sonia B.; Vohnik, Martin (2015): Is the prominent ericoid mycorrhizal fungus
Rhizoscyphus ericae absent in the Southern Hemisphere's Ericaceae? A case study on the diversity of root
mycobionts in Gaultheria spp. from northwest Patagonia, Argentina. MYCORRHIZA. 25: 25-40
Krashevska, Valentyna; Sandmann, Dorothee; Maraun, Mark; Scheu, Stefan (2014): Moderate changes in nutrient
input alter tropical microbial and protist communities and belowground linkages. ISME JOURNAL. 8: 11261134
Valentine, Julie; Davis, Stephen R.; Kirby, Jason R.; Wilkinson, David M. (2013): The Use of Testate Amoebae
in Monitoring Peatland Restoration Management: Case Studies from North West England and Ireland.
ACTA PROTOZOOLOGICA. 52: 129-145
Krashevska, Valentyna; Sandmann, Dorothee; Maraun, Mark; Scheu, Stefan (2012): Consequences of exclusion
of precipitation on microorganisms and microbial consumers in montane tropical rainforests. OECOLOGIA.
170: 1067-1076
Crotty, Felicity V.; Adl, Sina M.; Blackshaw, Rod P.; Murray, Philip J. (2012): Using Stable Isotopes to
Differentiate Trophic Feeding Channels within Soil Food Webs. JOURNAL OF EUKARYOTIC
MICROBIOLOGY. 59: 520-526
Burdikova, Zuzana; Capek, Martin; Svindrych, Zdenek; Gryndler, Milan; Kubinova, Lucie; Holcova, Katarina
(2012): Ecology of Testate Amoebae in the Komorany Ponds in the Vltava Basin. MICROBIAL
ECOLOGY. 64: 117-130
Jassey, Vincent E. J.; Shimano, Satoshi; Dupuy, Christine; Toussaint, Marie-Laure; Gilbert, Daniel (2012):
Characterizing the Feeding Habits of the Testate Amoebae Hyalosphenia papilio and Nebela tincta along a
Ondřej Koukol
Podklady pro habilitační řízení
Narrow "Fen-Bog" Gradient Using Digestive Vacuole Content and C-13 and N-15 Isotopic Analyses.
PROTIST. 163: 451-464
Vohnik, Martin; Burdikova, Zuzana; Wilkinson, David M. (2012): Testate Amoebae Communities in the
Rhizosphere of Rhododendron ponticum (Ericaceae) in an Evergreen Broadleaf Forest in Southern Spain.
ACTA PROTOZOOLOGICA. 51: 259-269
Koukol O., Mourek J., Janovský Z., Černá K. (2009): Do oribatid mites (Acari: Oribatida) show a higher
preference for ubiquitous vs. specialized saprotrophic fungi from pine litter? Soil Biology & Biochemistry.
41(6): 1124–1131
Gergocs, V; Rethati, G; Hufnagel, L (2015): Litter quality indirectly influences community composition,
reproductive mode and trophic structure of oribatid mite communities: a microcosm experiment.
EXPERIMENTAL AND APPLIED ACAROLOGY. 67: 335-356
Bokhorst, S; Metcalfe, DB; Wardle, DA (2013): Reduction in snow depth negatively affects decomposers but
impact on decomposition rates is substrate dependent. SOIL BIOLOGY & BIOCHEMISTRY. 62: 157-164
van der Wal, A; Geydan, TD; Kuyper, TW; de Boer, W (2013): A thready affair: linking fungal diversity and
community dynamics to terrestrial decomposition processes. FEMS MICROBIOLOGY REVIEWS. 37: 477494
Seniczak, S; Seniczak, A; Kaczmarek, S; Graczyk, R (2013): External morphology and ontogeny of three species
of Damaeidae (Acari: Oribatida). INTERNATIONAL JOURNAL OF ACAROLOGY. 39: 293-310
*Heděnec, P; Radochová, P; Nováková, A; Kaneda, S; Frouz, J. (2013): Grazing preference and utilization of soil
fungi by Folsomia candida (Isotomidae:Collembola). EUROPEAN JOURNAL OF SOIL BIOLOGY. 55: 6670.
Seniczak, S; Seniczak, A (2013): Morphology of juvenile stages and ontogeny of three species of Damaeidae
(Acari: Oribatida). INTERNATIONAL JOURNAL OF ACAROLOGY. 39: 160-179
Erdmann, G; Scheu, S; Maraun, M (2012): Regional factors rather than forest type drive the community structure
of soil living oribatid mites (Acari, Oribatida). EXPERIMENTAL AND APPLIED ACAROLOGY. 57: 157169
Remen, C; Fransson, P; Persson, T (2010): Population responses of oribatids and enchytraeids to ectomycorrhizal
and saprotrophic fungi in plant-soil microcosms. SOIL BIOLOGY & BIOCHEMISTRY. 42: 978-985
Princz, JI; Behan-Pelletier, VM; Scroggins, RP; Siciliano, SD (2010): ORIBATID MITES IN SOIL TOXICITY
TESTING-THE USE OF OPPIA NITENS (CL KOCH) AS A NEW TEST SPECIES. ENVIRONMENTAL
TOXICOLOGY AND CHEMISTRY. 29: 971-979
Scheepmaker, JWA; Butt, TM (2010): Natural and released inoculum levels of entomopathogenic fungal
biocontrol agents in soil in relation to risk assessment and in accordance with EU regulations.
BIOCONTROL SCIENCE AND TECHNOLOGY. 20: 503-552
Koukol O., Novák F., Hrabal R., Vosátka M. (2006): Saprotrophic fungi transform organic phosphorus
from spruce needle litter. Soil Biology & Biochemistry. 38(12): 3372–3379
*Maciejczyk, E; Wieczoreka, D; Zwyrzykowska, A; Halama, M; Jasicka-Misiak, I; Kafarski, P. (2015):
Phosphorus Profile of Basidiomycetes. PHOSPHORUS, SULFUR, AND SILICONE AND THE RELATED
ELEMENTS. 190: 763-768
Wang Wei-wei; Zhao Qiong; Zhao Xin-ran; Zeng De-hui; Ai Gui-yan (2015): Effects of litter manipulation on
soil microbial community structure in a Pinus sylvestris var. mongolica plantation. SHENGTAIXUE ZAZHI.
34: 2605-2612
Hou, Enqing; Chen, Chengrong; Wen, Dazhi; Liu, Xian (2015): Phosphatase activity in relation to key litter and
soil properties in mature subtropical forests in China. SCIENCE OF THE TOTAL ENVIRONMENT. 515:
83-91
Cheesman, A. W.; Turner, B. L.; Reddy, K. R. (2014): Forms of organic phosphorus in wetland soils.
BIOGEOSCIENCES. 11: 6697-6710
Ondřej Koukol
Podklady pro habilitační řízení
Celi, L.; Cerli, C.; Turner, B. L.; Santoni, S.; Bonifacio, E. (2013): Biogeochemical cycling of soil phosphorus
during natural revegetation of Pinus sylvestris on disused sand quarries in Northwestern Russia. PLANT
AND SOIL. 367: 121-134
Boberg, Johanna B.; Ihrmark, Katarina; Lindahl, Bjorn D. (2011): Decomposing capacity of fungi commonly
detected in Pinus sylvestris needle litter. FUNGAL ECOLOGY. 4: 110-114
Cheesman, Alexander W.; Turner, Benjamin L.; Inglett, Patrick W.; Reddy, K. Ramesh (2010): Phosphorus
Transformations during Decomposition of Wetland Macrophytes. ENVIRONMENTAL SCIENCE &
TECHNOLOGY. 44: 9265-9271
Yan Hai-yuan; Gu Xi-rong; Shen Hong (2010): Microbial decomposition of forest litter: A review.
SHENGTAIXUE ZAZHI. 29: 1827-1835
Prietzel, Joerg; Stetter, Ulrich (2010): Long-term trends of phosphorus nutrition and topsoil phosphorus stocks in
unfertilized and fertilized Scots pine (Pinus sylvestris) stands at two sites in Southern Germany. FOREST
ECOLOGY AND MANAGEMENT. 259: 1141-1150
Koukol O., Mrnka L., Kulhánková A., Vosátka M. (2006): Competition of Scleroconidioma sphagnicola
with fungi decomposing spruce litter needles. Canadian Journal of Botany. 84(3): 469–476
Seena, Sahadevan; Monroy, Silvia (2016): Preliminary insights into the evolutionary relationships of aquatic
hyphomycetes and endophytic fungi. FUNGAL ECOLOGY. 19: 128-134
Tsuneda, A.; Davey, M. L.; Currah, R. S. (2011): A new endoconidial black meristematic genus, Atramixtia,
associated with declining white spruce and phylogenetically allied to a lineage of dothidealean conifer
pathogens. BOTANY-BOTANIQUE. 89: 323-336
Boberg, Johanna B.; Ihrmark, Katarina; Lindahl, Bjorn D. (2011): Decomposing capacity of fungi commonly
detected in Pinus sylvestris needle litter. FUNGAL ECOLOGY. 4: 110-114
van der Wal, Annemieke; Bloem, Jaap; Mulder, Christian; de Boer, Wietse (2009): Relative abundance and
activity of melanized hyphae in different soil ecosystems. SOIL BIOLOGY & BIOCHEMISTRY. 41: 417419
Snajdr, Jaroslav; Valaskova, Vendula; Merhautova, Vera; Cajthaml, Tomas; Baldrian, Petr (2008): Activity and
spatial distribution of lignocellulose-degrading enzymes during forest soil colonization by saprotrophic
basidiomycetes. ENZYME AND MICROBIAL TECHNOLOGY. 43: 186-192
Lindahl, Bjorn; Boberg, Johanna (2008): Distribution and Function of Litter Basidiomycetes in Coniferous
Forests. ECOLOGY OF SAPROTROPHIC BASIDIOMYCETES. 28: 183-196
Tsuneda, Akihiko; Currah, Randolph S. (2006): Toward a deeper understanding of the nature of pleomorphism in
conidial fungi. REPORTS OF THE TOTTORI MYCOLOGIXAL INSTITUTE. 44: 1-52
Koukol O., Gryndler M., Novák F., Vosátka M. (2004): Effect of Chalara longipes on decomposition of
humic acids from Picea abies needle litter. Folia Microbiologica. 49(5): 574–578
Nonnenmann, Matthew W.; Coronado, Gloria; Thompson, Beti; Griffith, William C.; Hanson, John Delton;
Vesper, Stephen; Faustman, Elaine M. (2012): Utilizing pyrosequencing and quantitative PCR to
characterize fungal populations among house dust samples. JOURNAL OF ENVIRONMENTAL
MONITORING. 14: 2038-2043
Sera, Bozena; Novak, Frantisek (2011): The effect of humic substances on germination and early growth of
Lamb's Quarters (Chenopodium album agg.). BIOLOGIA. 66: 470-476
*Zavarzina, A.G.; Lisov, A.A.; Zavarzin, A. A.; Leontievsky, A. A. (2010): Fungal Oxidoreductases and
Humification in Forest Soils. IN: Shukla, G.; Varma, A (Eds): Soil Enzymology. Springer, pp. 207-228
Matucha, M.; Gryndler, M.; Schroeder, P.; Forczek, S. T.; Uhlirova, H.; Fuksova, K.; Rohlenova, J. (2007):
Chloroacetic acids - Degradation intermediates of organic matter in forest soil. SOIL BIOLOGY &
BIOCHEMISTRY. 39: 382-385
Rezacova, Veronika; Hrselova, Hana; Gryndlerova, Hana; Miksik, Ivan; Gryndler, Milan (2006): Modifications of
degradation-resistant soil organic matter by soil saprobic microfungi. SOIL BIOLOGY &
BIOCHEMISTRY. 38: 2292-2299
Ondřej Koukol
Podklady pro habilitační řízení
Rezacova, V.; Gryndler, M. (2006): Fluorescence spectroscopy: a tool to characterize humic substances in soil
colonized by microorganisms?. FOLIA MICROBIOLOGICA. 51: 215-221
Baldrian, P.; Zervakis, G. I.; Merhautova, V.; Ntougias, S.; Ehaliotis, C.; Nerud, F. (2006): The use of hydroxylradical-generating systems for the treatment of olive mill wastewaters. FOLIA MICROBIOLOGICA. 51:
337-341
Koukol O. (2010): Revision of “Septonema ochraceum” revealed three new species of Venturiaceae and
Herpotrichiellaceae. Mycological Progress, 9: 369–378
Samerpitak, K.; van den Ende, A. H. G. Gerrits; Menken, S. B. J.; de Hoog, G. S. (2015): Three New Species of
the Genus Ochroconis. MYCOPATHOLOGIA. 180: 7-17
Machouart, M.; Samerpitak, K.; de Hoog, G. S.; Gueidan, C. (2014): A multigene phylogeny reveals that
Ochroconis belongs to the family Sympoventuriaceae (Venturiales, Dothideomycetes). FUNGAL
DIVERSITY. 65: 77-88
Li, Wenhuan; Xiao, Yunxue; Wang, Chunsheng; Dang, Jiling; Chen, Chen; Gao, Liu; Batzer, Jean C.; Sun,
Guangyu; Gleason, Mark L. (2013): A new species of Devriesia causing sooty blotch and flyspeck on
Rubber Trees in China. MYCOLOGICAL PROGRESS. 12: 733-738
Park, Mi-Jeong; Shin, Hyeon-Dong (2011): Cladophialophora pucciniophila, a new hyphomycete parasitizing a
rust fungus. MYCOTAXON. 116: 449-456
Hyde, K. D.; McKenzie, E. H. C.; Koko, T. W. (2011): Towards incorporating anamorphic fungi in a natural
classification - checklist and notes for 2010. MYCOSPHERE. 2: 1-88
Frank, J.; Crous, P. W.; Groenewald, J. Z.; Oertel, B.; Hyde, K. D.; Phengsintham, P.; Schroers, H. -J. (2010):
Microcyclospora and Microcyclosporella: novel genera accommodating epiphytic fungi causing sooty blotch
on apple. PERSOONIA. 24: 93-105
Koukol O. (2011): New species of Chalara occupying coniferous litter. Fungal Diversity. 49(1): 75–91
Benucci, GMN; Lefevre, C; Bonito, G (2016): Characterizing root-associated fungal communities and soils of
Douglas-fir (Pseudotsuga menziesii) stands that naturally produce Oregon white truffles (Tuber oregonense
and Tuber gibbosum). MYCORRHIZA. DOI 10.1007/s00572-015-0677-9
Delgado, Gregorio; Miller, Andrew N.; Fernandez, Fernando A. (2015): Curviclavula, a new genus of anamorphic
Helotiales (Leotiomycetes) isolated from air. MYCOLOGICAL PROGRESS. 14: 3
Kumar, Niraj; Palmer, Gerald R.; Shah, Vishal; Walker, Virginia K. (2014): The Effect of Silver Nanoparticles on
Seasonal Change in Arctic Tundra Bacterial and Fungal Assemblages. PLOS ONE. 9: e99953
Cleary, M. R.; Daniel, G.; Stenlid, J. (2013): Light and scanning electron microscopy studies of the early infection
stages of Hymenoscyphus pseudoalbidus on Fraxinus excelsior. PLANT PATHOLOGY. 62: 1294-1301
Wu, Hao; Yang, Hongyan; You, Xiangling; Li, Yuhua (2012): Isolation and Characterization of SaponinProducing Fungal Endophytes from Aralia elata in Northeast China. INTERNATIONAL JOURNAL OF
MOLECULAR SCIENCES. 13: 16255-16266
Koukol O. & Říhová D. (2013): Pentaster cepaeophilus gen. et sp. nov. described from surface of empty
shells of Cepaea hortensis. Nova Hedwigia, 96: 495-500
Monteiro, Josiane Santana; Pascholati Gusmao, Luis Fernando (2014): Two new species of Ceratosporella
(anamorphic fungi) from Brazilian Amazon forest. NOVA HEDWIGIA. 98: 481-490
Xia, Ji-Wen; Ma, Li-Guo; Castaneda-Ruiz, Rafael F.; Zhang, Xiu-Guo (2014): A new species of Sporidesmiopsis
and three new records of other dematiaceous hyphomycetes from southern China. NOVA HEDWIGIA. 98:
103-111
Qu, Chunrong; Yin, Guohua; Zhao, Guozhu; Cui, Baokai; Liu, Xingzhong (2014): Three new species of
Berkleasmium (Hyphomycetes) from China. NOVA HEDWIGIA. 98: 151-161
Ondřej Koukol
Podklady pro habilitační řízení
Haňáčková Z., Koukol O., Havrdová L., Gross A. (2015): Local population structure of Hymenoscyphus
fraxineus surveyed by an enlarged set of microsatellite markers. Forest Pathology 45(5): 400-407
*Landolt, J; Gross, A; Holdenrieder, O; Pautasso, M (2016): Ash dieback due to Hymenoscyphus fraxineus: what
can be learnt from evolutionary ecology? PLANT PATHOLOGY. DOI: 10.1111/ppa.12539
*Dvořák, M; Rotková, G; Botella, L. (2016): Detection of airborne inoculum of Hymenoscyphus fraxineus and H.
albidus during seasonal fluctuations associated with absence of apothecia. FORESTS 2016, 7, 1
*Nguyen, D.T., Cleary, M.R., Enderle, R., Berlin, A., Stenlid, J. (2016): Analyses of the ash dieback pathogen,
Hymenoscyphus fraxineus, suggest role of tree species diversity on colonization and population structure
differentiation. FOREST PATHOLOGY. 46: 82-84
Koukol O., Kelnarová I., Černý K. (2014): Recent observations of sooty bark disease of sycamore maple in
Prague (Czech Republic) and the phylogenetic placement of Cryptostroma corticale. Forest Pathology. 45(1):
21-27
*Bencheva, S; (2015): First report of Cryptostroma corticale (Ellis & Everh.) P.H. Greg. & S. Waller on Acer
platanoides L. in Bulgaria. SILVA BALCANICA. 15: 101-104.
*Oliveira Longa, C.M.; Vai, N.; Maresi, G (2016): Cryptostroma corticale in the northern Apennines (Italy).
PHYTOPATHOLOGIA MEDITERRANEA. 55: 136-138.
Koukol O. & Baldrian P. (2012): Intergeneric variability in enzyme production of microfungi from pine
litter. Soil Biology & Biochemistry 49: 1–3
Pasqualetti, M.; Mulas, B.; Rambelli, A.; Tempesta, S. (2014): Saprotrophic litter fungi in a Mediterranean
ecosystem: Behaviour on different substrata. PLANT BIOSYSTEMS. 148: 342-356
Di Lonardo, D. P.; Pinzari, F.; Lunghini, D.; Maggi, O.; Granito, V. M.; Persiani, A. M. (2013): Metabolic
profiling reveals a functional succession of active fungi during the decay of Mediterranean plant litter. SOIL
BIOLOGY & BIOCHEMISTRY. 60: 210-219
Koukol O., Beňová B., Vosmanská M., Frantík T., Vosátka M., Kovářová M. (2008): Decomposition of
spruce litter needles of different quality by Setulipes androsaceus and Thysanophora penicillioides. Plant
and Soil. 311(1-2): 151–159
Kagata, Hideki; Ohgushi, Takayuki (2013): Home-field advantage in decomposition of leaf litter and insect frass.
POPULATION ECOLOGY. 55: 69-76
Griffin, Jacob M.; Turner, Monica G. (2012): Changes to the N cycle following bark beetle outbreaks in two
contrasting conifer forest types. OECOLOGIA. 170: 551-565
Kagata, Hideki; Ohgushi, Takayuki (2012): Non-additive effects of leaf litter and insect frass mixture on
decomposition processes. ECOLOGICAL RESEARCH. 27: 69-75
Kozubíková-Balcarová E., Koukol O., Martin M.P., Svoboda J., Petrusek A., Dieguez-Uribeondo J. (2014):
The diversity of oomycetes on crayfish: Morphological vs. molecular identification of cultures obtained
while isolating the crayfish plague pathogen. Fungal Biology. 118(7): 601-611
Grandjean, Frederic; Vralstad, Trude; Dieguez-Uribeondo, Javier; Jelic, Misel; Mangombi, Joa; Delaunay, Carine;
Filipova, Lenka; Rezinciuc, Svetlana; Kozubikova-Balcarova, Eva; Guyonnet, Daniel; Viljamaa-Dirks, Satu;
Petrusek, Adam (2014): Microsatellite markers for direct genotyping of the crayfish plague pathogen
Aphanomyces astaci (Oomycetes) from infected host tissues. VETERINARY MICROBIOLOGY. 170: 317
Keller, N. S.; Pfeiffer, M.; Roessink, I.; Schulz, R.; Schrimpf, A. (2014): First evidence of crayfish plague agent
in populations of the marbled crayfish (Procambarus fallax forma virginalis). KNOWLEDGE AND
MANAGEMENT OF AQUATIC ECOSYSTEMS. 414: 15
Ondřej Koukol
Podklady pro habilitační řízení
Pusz W., Kita W., Kaczmarek A., Nowosad K., Koukol O. (2013): Diseases of mountain pine (Pinus mugo)
needles in subalpine zone of Karkonosze Mts. Sylwan. 157(10): 761–768
Pusz, Wojciech; Weber, Ryszard; Dancewicz, Andrzej; Kita, Wlodzimierz (2016): Effect of weather conditions
on the incidence of Lophodermium yellow needle blight in the dwarf mountain pine in the Karkonosze and
Izerskie Mountains (Poland). JOURNAL OF MOUNTAIN SCIENCE. 13: 725-733
Pusz, Wojciech; Zwijacz-Kozica, Tomasz; Kita, Wlodzimierz (2015): Assessment of the mountain pine (Pinus
mugo) needles health at selected locations in the Tatra National Park. SYLWAN. 159: 411-418
Koukol O., Pusz W., Minter D. (2015): A new species of Lophodermium on needles of mountain pine (Pinus
mugo) from the Giant Mountains in Poland. Mycological Progress 14(5): 23
Pusz, Wojciech; Weber, Ryszard; Dancewicz, Andrzej; Kita, Wlodzimierz (2016): Effect of weather conditions
on the incidence of Lophodermium yellow needle blight in the dwarf mountain pine in the Karkonosze and
Izerskie Mountains (Poland). JOURNAL OF MOUNTAIN SCIENCE. 13: 725-733
Pusz, Wojciech; Zwijacz-Kozica, Tomasz; Kita, Wlodzimierz (2015): Assessment of the mountain pine (Pinus
mugo) needles health at selected locations in the Tatra National Park. SYLWAN. 159: 411-418
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differ according to litter type. Fungal Ecology. 8: 66–71
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species described from spruce needles. Nova Hedwigia, 91: 243–248
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litter of a montane Picea abies forest investigated through strain isolation and molecular fingerprinting.
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Koukol O., Haňáčková Z., Dvořák, M., Havrdová L. (2015): Unseen, but still present in Czechia:
Hymenoscyphus albidus detected by real-time PCR, but not by intensive sampling. Mycological Progress
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V Praze dne 27. 6. 2016
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Ondřej Koukol