Plant Cell Physiol. 45(10): 1529–1536 (2004) JSPP © 2004 Short Communication Spatial and Temporal Tracing of Vessel Differentiation in Young Arabidopsis Seedlings by the Expression of an Immature Tracheary Element-specific Promoter Hyunjin Pyo 1, 2, 3, Taku Demura 2 and Hiroo Fukuda 1, 2 1 2 Department of Biological Sciences, Graduate School of Science, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033 Japan Plant Science Center, RIKEN, 1-7-22 Suehiro, Tsurumi-ku, Yokohama-shi, Kanagawa, 230-0045 Japan ; The vascular system is a complex tissue composed of several vascular cell types. However, little is known about the differentiation process of each vascular cell in situ. In this study, we found that the expression of the Zinnia cysteine protease 4 (ZCP4) promoter is restricted to only immature tracheary elements (TEs) in situ. Therefore, we monitored the early TE differentiation process in young Arabidopsis seedlings using a fusion gene of the ZCP4 promoter and the β-glucuronidase gene as a molecular marker. This approach revealed unique processes of vessel differentiation during early seedling development, in which discontinuous initiation of vessel element differentiation occurs at distinct regions, followed by the simultaneous differentiation of protoxylem vessels and bidirectional differentiation of metaxylem vessels to form a vessel in the plant body. Keywords: Arabidopsis — Cysteine protease — Metaxylem vessel — Programmed cell death — Protoxylem vessel — Tracheary element differentiation. Abbreviations: GUS, β-glucuronidase; HAI, hour after imbibition; PCD, programmed cell death; TE, tracheary element. The vascular system forms the structural architecture throughout the plant body for the transport of nutrients, water and signal molecules. Therefore, vascular system formation is regulated strictly in temporal and spatial manners. During primary vascular development, the pattern of vascular tissue is first visualized with the appearance of the procambial cells. The procambium of dicotyledonous embryos becomes evident at the late globular stage as elongated cells in the center of the embryo that are distinct from the nearly isodiametric surrounding ground tissue cells (West and Harada 1993, Jürgens 1994). Consistent with a histological basis, the expression of a marker gene, Athb-8, for the procambial state in Arabidopsis plants, has successfully visualized the putative procambium of globular- to heart-shaped staged embryos (Baima et al. 1995). After germination, the procambial cells subsequently differentiate 3 into the xylem and the phloem cells that constitute each vascular bundle (Dharmawardhana et al. 1992, Dolan et al. 1993, Busse and Evert 1999a, Busse and Evert 1999b). Vascular formation is an important issue in view of pattern formation in plants. In Arabidopsis, several mutants with aberrant vascular systems that lack continuity have been reported. Analyses of these mutants revealed the involvement of polar auxin transport and the auxin response in vascular pattern formation (Hardtke and Berleth 1998, Hamann et al. 1999, Hobbie et al. 2000, Deyholos et al. 2000, Geldner et al. 2004, Hardtke et al. 2004). In addition, the identification of causal genes of such mutants provided a new insight into the involvement of sterols (Choe et al. 1999, Diener et al. 2000, Jang et al. 2000, Carland et al. 2002, Schrick et al. 2002, Souter et al. 2002), small peptides (Casson et al. 2002) and cytokinins (Mahonen et al. 2000, Inoue et al. 2001) in vascular patterning. The vascular system is a complex tissue composed of xylem and phloem cells that consist of several cell types such as conductive elements, parenchyma cells, fiber cells and cambium/procambium cells. However, little is known about the differentiation process of each vascular cell in situ. Anatomical and histological studies using an optical or electron microscope allowed us to follow the differentiation process, but only after morphological cell changes. Moreover, the overall and coordinated differentiation pattern of each vascular tissue in the whole plant is difficult to understand because observations of vascular tissues are made with thin tissue sections. As a result, molecular markers are extremely useful for detecting cells at a specific differentiation stage and for following the differentiation process of certain vascular cells. For example, the preferential expression of an Arabidopsis homeobox gene, Athb-8, in procambial cells enabled us to use a fusion gene of this promoter and the GUS gene as a marker of procambium formation (Baima et al. 1995). Indeed, studies with this molecular marker have contributed to an understanding of procambium formation in plants (Koizumi et al. 2000, Kang and Dengler 2002, Kang et al. 2003, Carland and Nelson 2004). However, we need more molecular markers to understand the differentiation process of other vascular cells. Corresponding author: E-mail, [email protected]; Fax, +81-3-3812-4929. 1529 1530 Tracing Arabidopsis seedling vessel development Fig. 1 GUS expression pattern in Arabidopsis seedlings harboring the ZCP4 promoter::GUS gene. (A, B) Two-week-old seedlings. Magnified image of the part boxed by white lines in (A) is shown in (B). (C, D, E) The rosette leaf of 1-month-old seedlings. Magnified images of GUS expression in immature TEs are shown in (D) and (E). Circle, the leaf primodia; asterisk, shoot apical meristem. Bars: (A) 1 mm; (B) 200 µm; (C) 0.5 mm; (D, E) 100 µm. The in vitro cell culture system of Zinnia is an excellent model with which to analyze the processes of vascular differentiation (Fukuda and Komamine 1980). In this system, about half of the isolated mesophyll cells are induced to transdifferentiate into tracheary elements (TEs). Using this system, a number of TE differentiation-related genes have been identified (Lin and Northcote 1990, Demura and Fukuda 1993, Ye and Varner 1993, Demura and Fukuda 1994, Ye and Droste 1996, Aoyagi et al. 1998). Construction of a large-scale EST database and comprehensive gene expression profiling using this culture system have allowed the identification of many developmental stage-specific genes that are related to auxin function, signal transduction, cell wall formation and degradation, and programmed cell death (PCD) (Milioni et al. 2001, Demura et al. 2002, Milioni et al. 2002). To understand the differentiation process of a specific vascular cell, we considered the ZCP4 gene as an efficient molecular marker of TE differentiation. ZCP4 encodes a papain-like cysteine protease, and its transcript is transiently induced to dramatically high levels just before autolysis of TE PCD in vitro (Yamamoto et al. 1997) and in vivo (Demura et al. 2002). In this study, we first isolated the ZCP4 promoter from Zinnia and performed a detailed analysis of the expression pattern of the ZCP4 promoter::GUS gene in transgenic Arabidopsis. This analysis clearly showed that expression of the promoter occurred strictly in immature TEs, and not in mature TEs or other cells, and that expression was early, occurring before visible secondary cell wall formation. This demon- strated that ZCP4 expression marks vessel differentiation prior to morphological changes and temporally before cell contents are lost. Therefore, we followed the TE differentiation process using the ZCP4 promoter as a molecular marker. As a result, we succeeded in presenting spatiotemporal patterns of vessel differentiation during primary vascular development. ZCP4 (GenBank accession no. AB091070) was isolated from a cDNA library prepared from Zinnia cultured cells that transdifferentiated into xylem cells (Demura et al. 2002). To determine the spatial and developmental changes in the expression profile of ZCP4, we used inverse PCR to isolate a ZCP4 genomic DNA fragment that contained 1829 bp of the ZCP4 promoter region and the 27 bp coding region. The fragment was translationally fused to the β-glucuronidase (GUS) gene, and then introduced into Arabidopsis with Agrobacterium tumefaciens. GUS expression, which was driven by the ZCP4 promoter in the shoot apical region of 2-week-old transgenic plants, was exclusively located in the differentiating vessels, but not in mature vessels, shoot apices or leaf primordia (Fig. 1A, B). The GUS expression in rosette leaves of 1-month-old plants was also restricted to nascent vessels of higher order veins and free-ending veinlets (Fig. 1C–E). Similarly, the ZCP4 promoter induced transient GUS expression that was specific to the differentiating vessels of all organs examined. This included cotyledons, hypocotyls, roots, stems and flowers (Fig. 2, data not provided). This staining pattern was the same as that driven by the shorter promoter region (429 bp) (data not provided). The strict restriction of expression to developing vessels and early expression (occurring before visible secondary wall formation) imply that the ZCP4 promoter::GUS gene can be an efficient marker for analyzing vessel development, rather than morphological features. Using the ZCP4 promoter::GUS gene, we tried to visualize the temporal and spatial distribution of vessel differentiation during the development of Arabidopsis seedlings. We harvested Arabidopsis seedlings between 81 and 120 h after imbibition (HAI) at 3 h intervals, and categorized their GUS expression patterns as shown in Fig. 2, 3. Initiation of the first protoxylem vessel differentiation At 81 HAI, when the radicle protruded from the ruptured seed coat, the first GUS expression was observed in the proximal region of the cotyledon midveins and/or the distal region of the vascular strands of the hypocotyls (Fig. 2, 3A1– A3). At this time, we could not detect any developing TEs with secondary cell walls (Fig. 2a, b). Interestingly, the proportion of type A3 seedlings with GUS expression at the two regions was about 20% through the early development of the seedling (up to 99 HAI) (Fig. 4A). This result suggests that differentiation of the first protoxylem vessels initiates at the proximal region of the cotyledon midvein and/or the distal region of the hypocotyls. Tracing Arabidopsis seedling vessel development 1531 Fig. 2 Typical pattern types of GUS expression driven by the ZCP4 promoter during the development of transgenic Arabidopsis seedlings. GUS staining of transgenic Arabidopsis seedlings between 81 and 120 HAI were categorized as follows. Early development of cotyledon midvein and hypocotyl-root axis: (A1) proximal region of the cotyledon midvein; (A2) distal region of the hypocotyl; (A3) combination of (A1) and (A2); (A4-1 and -2) discontinuous cell files through the cotyledon midvein and hypocotyl-root axis; (A5) continuous cell files through the length of the cotyledon midvein and hypocotyl-root axis. Magnified images of the regions boxed in (A1) and (A2) are shown in (a) and (b), respectively. Subsequent development at the hypocotyl-root axis: (B1) protoxylem vessels at the most distal part of the root; (B2) protoxylem vessels at the most distal part of the roots and metaxylem vessels at the hypocotyl-root junction; (B3) in addition to the region described in (B2), metaxylem vessels at the hypocotyl-cotyledon junction; (B4) protoxylem vessels at the most distal part of the root, metaxylem vessels around the cotyledonhypocotyl junction, and the upper and lower regions of the hypocotyl-root junction. (C1) shows the cotyledon with GUS expression at the distal and proximal regions of the distal secondary veins and at junctions between the distal and proximal secondary veins. Magnified images of the regions boxed in (C1) are shown in (c) and (d). (A1–A3) Seedlings at 84 HAI; (A4-1 and -2) seedlings at 90 HAI; (A5) seedlings at 99 HAI; (B1) seedlings at 105 HAI; (B2) seedlings at 117 HAI; (B3) seedlings at 114 HAI; (B4) seedlings at 120 HAI; (C1) seedlings at 111 HAI. Bars: (A1–B4) 200 µm; (C1) 200 µm; (a, b) 30 µm; (c, d) 50 µm. Progress of protoxylem vessel differentiation At 87 HAI, discontinuous and almost evenly distributed GUS expression was observed in the cotyledon midvein and along the hypocotyl-root axis (Fig. 2, 3A4). The first second- ary cell wall formation was recognized only in some cells with GUS staining at this time. Seedlings with this pattern markedly increased until 93 HAI, and decreased thereafter (Fig. 4A). However, type A5 seedlings with GUS expression through the 1532 Tracing Arabidopsis seedling vessel development Fig. 3 Schematic diagram of expression patterns of the ZCP4 promoter::GUS gene in transgenic Arabidopsis seedlings. Gray, blue, red and striped lines indicate procambial cells, protoxylem vessels with GUS expression, metaxylem vessels with GUS expression and mature vessels, respectively. length of the cotyledon midvein and hypocotyl-root axis appeared at 96 and 99 HAI (Fig. 4A). This observation implies that the differentiation of protoxylem vessels starts at the discontinuous region and progresses simultaneously to form continuous strands in cotyledon midveins, hypocotyls and roots. Initiation of metaxylem differentiation in hypocotyls and roots As development of the seedlings advanced, GUS expression in mature protoxylem vessels of the hypocotyls and roots immediately disappeared and was restricted to immature protoxylem vessels, which were next to the previously differentiated cells in the same cell file of the xylem pole in roots (Fig. 2, 3B1). Thereafter, continuous protoxylem vessels were always formed close to the root tip during seedling development (Fig. 2, 3B2–B4). GUS expression in metaxylem vessels just inside the protoxylem vessels along the hypocotyl-root axis was first detected at 105 HAI (Fig. 4B2). Expression was found only at the hypocotyl-root junction (B2), or at both the hypocotyl-root junction and the cotyledon-hypocotyl junction (B3) (Fig. 2, 3). GUS expression restricted to the cotyledon-hypocotyl junction was rarely observed. While type B2 seedlings were most common at 108 HAI, type B3 seedlings were most common at 111 HAI (Fig. 4B). These results indicate that metaxylem vessel differentiation along the hypocotyl-root axis initiates at the hypocotyl-root and cotyledon-hypocotyl junctions, and also suggests that differentiation at the hypocotyl-root junction occurs slightly before differentiation at the cotyledon-hypocotyl junction. Progress of metaxylem vessel differentiation in hypocotyls and roots Type B4 seedlings, which have mature metaxylem vessels at the hypocotyl-root junction and GUS expression in immature vessels both above and below the mature metaxylem vessels, appeared at 108 HAI and increased until 120 HAI (Fig. 4B). Fig. 4 Changes in the proportion of GUS expression patterns in transgenic Arabidopsis plants. GUS expression patterns of more than 20 seedlings were observed at 3 h intervals from 81 to 120 HAI and categorized into A0–A5 or B0–B4, as described in Fig. 3, 4. (A) A0– A5 (B) B0–B4. This result implies that metaxylem vessel differentiation that was initiated at the hypocotyl-root junction progresses bipetally. Vessel differentiation in cotyledon secondary veins The temporal patterns of GUS expression in the secondary veins of cotyledons varied greatly in each seedling, which allowed us to analyze changes in GUS expression patterns only qualitatively. There were no seedlings with GUS expression in Tracing Arabidopsis seedling vessel development Fig. 5 Schematic diagram of the spatial pattern model of vessel differentiation during the early development of Arabidopsis seedlings. The first protoxylem vessels differentiate at two separate regions: the cotyledon-hypocotyl junction and the proximal region of the cotyledon (yellow). Subsequently, vessel differentiation occurs almost simultaneously in the cotyledon and hypocotyl-root axis (blue). Following this, metaxylem vessels differentiate bipetally from the cotyledonhypocotyl and hypocotyl-root junctions (red arrows). Vessel differentiation in the distal secondary veins of the cotyledons begins at four regions (red). Subsequently, vessel differentiation occurs almost simultaneously in four regions (green). Gray represents proximal secondary vein at the procambial stage. mv, midvein region; ds, distal secondary vein region; ps, proximal secondary vein region. the secondary veins of cotyledons until 102 HAI. GUS expression in the secondary veins was first observed in the distal region of cotyledons at 105 HAI (Fig. 2, 3C1). Between 108 and 120 HAI, GUS expression was observed mainly at both the distal and the proximal regions that crossed the midvein, and sometimes at the junctions of loops of the secondary veins (Fig. 2, 3C1). Subsequently, a closed loop of GUS-expressing cells appeared along the secondary veins of some seedlings (see cotyledons in Fig. 2B2, 3C2). In plants, increased gene expression of the papain-like cysteine proteases is associated with protein remobilization during seed germination (Tranbarger and Misra 1996), organ senescence (Lohman et al. 1994, Coupe et al. 2003) and numerous plant cell suicide programs (Solomon et al. 1999, Fukuda 2000, Hayashi et al. 2001, Wan et al. 2002). The final process of TE differentiation involves developmental PCD, during which time cell components are autolyzed (Fukuda 2000). ZCP4 transcripts accumulate transiently just before the autolysis of TE PCD in vitro (Yamamoto et al. 1997) and in vivo (Demura et al. 2002). Consistent with such previous studies, its homologs, Zinnia p48h-17, Arabidopsis XCP1, XCP2 and Zea 1533 AI734319, have been reported to be expressed preferentially in immature xylem cells (Ye and Varner 1996, Funk et al. 2002) and vascular cells (Nakazono et al. 2003). These results strongly suggest that ZCP4-type cysteine proteases function in vessel development. The expression of most vascular differentiation-related genes that have been isolated so far is not restricted to vessel cells (Igarashi et al. 1998, Li et al. 1999, Chen et al. 2000, Lauvergeat et al. 2002, Groover et al. 2003). In this study, we demonstrated that expression of the ZCP4 promoter occurred strictly in immature vessels, and not in mature vessels or other cells such as xylem parenchyma cells and meristem cells. Nor was the ZCP4 promoter induced by wounding (data not provided). These results suggested the possibility of using the ZCP4 promoter as a marker of the temporal and spatial distribution of cells undergoing vessel differentiation. Therefore, we used a chimeric ZCP4 promoter::GUS gene to monitor vessel development in young Arabidopsis seedlings after germination, and succeeded in revealing the formation of the spatiotemporal vessel pattern in seedlings. The pattern of vessel differentiation in the young Arabidopsis seedlings is summarized in Fig. 5. Protoxylem vessel differentiation is initiated discontinuously (yellow lines) and then progresses almost simultaneously along the cotyledon, hypocotyl and root (blue lines and blue arrow). In the root, new protoxylem vessel elements are added acropetally onto the previously differentiated elements in the same cell file, and consequently, a continuous, uninterrupted protoxylem vessel is established close to the root tip (blue arrow). Similar to the cotyledon midvein, vessel differentiation is initiated discontinuously at vessel junctions (red lines) and progresses simultaneously to form continuous secondary veins (green lines). Metaxylem vessel differentiation also discontinuously starts at the cotyledon-hypocotyl and hypocotyl-root junctions (red arrows). Interestingly, metaxylem vessels subsequently differentiate bidirectionally from the junctions. Previous anatomical studies suggested that differentiation and lignification of the protoxylem vessels proceed acropetally in the cotyledon midvein and basipetally in the hypocotyl during the early development of Arabidopsis seedlings (Dharmawardhana et al. 1992, Busse and Evert 1999a). In this study, however, we demonstrated that protoxylem vessel differentiation is initiated discontinuously and then progresses almost simultaneously along the cotyledon midvein, hypocotyl and root. This new finding might be due to the use of an efficient molecular marker, with which we could easily follow the early stages of vessel differentiation throughout the plant in detail. In contrast, morphological criteria such as secondary cell wall thickening and lignification, which are the markers not only of differentiating vessel cells, but also of mature vessel cells, might not precisely mirror the sequence and timing of cell differentiation. Little is known about spatial and temporal patterns of metaxylem vessel differentiation. A molecular marker, the chimeric ZCP4 promoter::GUS gene, also allowed us to fol- 1534 Tracing Arabidopsis seedling vessel development low the development of metaxylem differentiation, and to determine the bidirectional development of metaxylem vessels. We indicated that new vessel differentiation starts at restricted regions in young Arabidopsis seedlings; that is, the proximal region of the midveins in cotyledons, the distal region of hypocotyls for the first protoxylem vessel differentiation (Fig. 5, yellow), and the cotyledon-hypocotyl and hypocotylroot junctions for metaxylem vessel differentiation (Fig. 5, red arrow). In the secondary veins of cotyledons, vessel differentiation started at four vein crosses (Fig. 5, red). What initiates the differentiation of xylem vessel elements at the restricted regions? The initiation might be coupled with phytohormonal action. Auxins and cytokinins are well known to be involved in the initiation of vessel differentiation (Sachs 1981, Fukuda 1992, Aloni 1987, Aloni 1995). In Zinnia culture cells, vessel cell differentiation is induced only in culture medium that contains both auxins and cytokinins (Fukuda and Komamine 1980). Indeed, the ZCP4 gene was induced only when cells were cultured in auxin-cytokinin-containing medium (Yamamoto et al. 1997). Recent progress using molecular markers and specific monoclonal antibodies has enabled the visualization of patterns of production, movement, and the accumulation of free auxin in developing plant tissues (Sieburth 1999, AvsianKretchmer et al. 2002, Friml et al. 2002, Marchant et al. 2002, Kamada et al. 2003, Aloni et al. 2003). Visualization of auxin distribution using an auxin-inducible promoter during Arabidopsis leaf development indicated that free auxin accumulates in the region at which the midvein and secondary veins of rosette leaves meet (Aloni et al. 2003). The leaf-stem junction is suggested to be the local barrier that slows down auxin flow and results in the increasing levels of auxin concentrations found there (Aloni 2001). Kamada et al. (2003) suggested that the root-shoot junction is a source of auxin signals for gravimorphogenesis (peg formation) in cucumber seedlings. These results strongly suggest that the initiation sites of vessel differentiation in young Arabidopsis seedlings might be the sites at which free auxin accumulates. If this is true, further vessel differentiation from the initiation sites might also be controlled by auxins. We found bidirectional differentiation of metaxylem vessels from the initiation sites. This phenomenon cannot be explained simply by the polar transport of auxins. However, recent advance in studies on PIN auxin efflux carrier proteins revealed dynamic changes in inter- and intracellular localization of the PIN proteins and subsequent changes in the direction of auxin flow (Friml et al. 2003). Therefore, to understand the mechanism of the initiation and further development of vessel cell differentiation in young seedlings, we need to reveal the accumulation and flow of auxins in vascular tissues. A 1,625 bp genomic fragment DNA, which corresponded to the ZCP4 cDNA, was obtained by PCR from Zinnia genomic DNA using primers for the 5′ and 3′ ends of the cDNA (5′-CAACAATGGCATTCATATTCTCTTCCAAAA-3′ and 5′-GCTGAAAAATGATGGATTTATTCATTCCAA-3′, re- spectively). The PCR product was cloned into a pGEM-T Easy vector (Promega, Madison, WI, U.S.A.), yielding pZCP4-G. The ZCP4 promoter region flanking the coding region was obtained using the inverse PCR method (Ochman et al. 1988) with a set of specific primers for the ZCP4 cDNA (5′-GATTGAAAACTCGTGGGCTAAAGCC-3′ and 5′-ACATAGGTTTGAGATCTTCATGGAC-3′). The resulting PCR product was cloned into pGEM-T Easy vector, yielding pZCP4-P. Using pZCP4-P, a 1,829 bp and a 429 bp promoter fragment were amplified using primers that incorporated an XbaI site (underlined) at the 5′ end (5′-GGTCTAGACTCAAGACATTTCTTACTTATAGAC-3′) and (5′-GGTCTAGATCCACCATCCCTTATAATGTAATAT-3′) and a BamHI site at the 3′ end (5′-CCGGATCCCTTTTTGGAAGAGAATATGAATGCC3′). The resulting PCR products were subcloned into pGEM-T Easy and subsequently digested with XbaI and BamHI. The XbaI–BamHI fragments were inserted in-frame with the GUS reporter gene in the binary vector, yielding pZCP4-GUS. The pZCP4-GUS binary vector was used to transform A. tumefaciens, strain C58C1. Four-week-old Arabidopsis plants were infected with the transformed Agrobacterium strain, according to the vacuum infiltration method (Bechtold and Pelletier 1998). Transgenic plants were selected by plating on medium that contained hygromycin B (20 µg ml–1). T1 plants and homozygous T3 seeds were used in this study. For the tracing vessel differentiation, homozygous T3 seeds were surface-sterilized by immersion in a solution of 1% (v/v) sodium hypochlorite and 0.1% (w/v) Triton X-100 for 10 min, and rinsed five times with sterile deionized water prior to plating. Plates were sealed with gas-permeable tape, incubated for 72 h in the dark at 4°C, and then incubated at 24°C under constant illumination. Seedlings were harvested at the indicated HAI to measure development. Histochemical GUS staining was performed according to the method of Jefferson et al. (1987). Seedlings were fixed in 90% (v/v) acetone for more than 1 day at –20°C. After washing in 100 mM sodium phosphate buffer (pH 7.0) at least three times, the seed coats were removed from the seedlings. Samples were immersed in a reaction buffer (1 mM 5-bromo-4chloro-3-indolyl glucuronide, 0.5 mM potassium ferricyanide and 0.5 mM potassium ferrocyanide) in 100 mM sodium phosphate buffer (pH 7.0), and then incubated at 37°C for 1 h in the dark. After GUS staining, the samples were cleared in a clearing solution (8 g chloral hydrate, 1 ml glycerol and 2 ml water), and then observed under a light microscope equipped with Nomarski optics (Olympus, Tokyo, Japan). References Aloni, R. (1987) Differentiation of vascular tissues. Annu. Rev. Plant Physiol. 38: 179–204. Aloni, R. (1995) The induction of vascular tissues by auxin and cytokinin. In Plant Hormones: Physiology, Biochemistry and Molecular Biology, 2nd edition. Edited by Davies, P.J. pp. 531–546. Kluwer Academic Publishers, Dordrecht, The Netherlands. Tracing Arabidopsis seedling vessel development Aloni, R. (2001) Foliar and axial aspects of vascular differentiation: hypotheses and evidence. J. Plant Growth Regul. 20: 22–34. Aloni, R., Schwalm, K., Langhans, M. and Ullrich, C.I. (2003) Gradual shifts in sites of free-auxin production during leaf-primordium development and their role in vascular differentiation and leaf morphogenesis in Arabidopsis. Planta 216: 841–853. Aoyagi, S., Sugiyama, M. and Fukuda, H. (1998) BEN1 and ZEN1 cDNAs encoding S1-type DNases that are associated with programmed cell death in plants. FEBS Lett. 429: 134–138. Avsian-Kretchmer, O., Cheng, J.C., Chen, L., Moctezuma, E. and Sung, Z.R. (2002) Indole acetic acid distribution coincides with vascular differentiation pattern during Arabidopsis leaf ontogeny. Plant Physiol. 130: 199–209. Baima, S., Nobili, F., Sessa, G., Lucchetti, S., Ruberti, I. and Morelli, G. (1995) The expression of the Athb-8 homeobox gene is restricted to provascular cells in Arabidopsis thaliana. Development 121: 4171–4182. Bechtold, N. and Pelletier, G. (1998) In planta Agrobacterium-mediated transformation of adult Arabidopsis thaliana plants by vacuum infiltration. Methods Mol. Biol. 82: 259–266. Busse, J.S. and Evert, R.F. (1999a) Pattern of differentiation of the first vascular elements in the embryo and seedling of Arabidopsis thaliana. Int. J. Plant Sci. 160: 1–13. Busse, J.S. and Evert, R.F. (1999b) Vascular differentiation and transition in the seedling of Arabidopsis thaliana (Brassicaceae). Int. J. Plant Sci. 160: 241– 251. Carland, F.M., Fujioka, S., Takatsuto, S., Yoshida, S. and Nelson, T. (2002) The identification of CVP1 reveals a role for sterols in vascular patterning. Plant Cell 14: 2045–2058. Carland, F.M. and Nelson, T. (2004) Cotyledon vascular pattern2-mediated inositol (1, 4, 5) triphosphate signal transduction is essential for closed venation patterns of Arabidopsis foliar organs. Plant Cell 16: 1263–1275 Casson, S.A., Chilley, P.M., Topping, J.F., Evans, I.M., Souter, M.A. and Lindsey, K. (2002) The POLARIS gene of Arabidopsis encodes a predicted peptide required for correct root growth and leaf vascular patterning. Plant Cell 14: 1705–1721. Chen, C., Meyermans, H., Burggraeve, B., De Rycke, R.M., Inoue, K., De Vleesschauwer, V., Steenackers, M., Van Montagu, M.C., Engler, G.J. and Boerjan, W.A. (2000) Cell-specific and conditional expression of caffeoylcoenzyme A-3-O-methyltransferase in poplar. Plant Physiol. 123: 853–867. Choe, S., Noguchi, T., Fujioka, S., Takatsuto, S., Tissier, C.P., Gregory, B.D., Ross, A.S., Tanaka, A., Yoshida, S., Tax, F.E. and Feldmann, K.A. (1999) The Arabidopsis dwf7/ste1 mutant is defective in the delta7 sterol C-5 desaturation step leading to brassinosteroid biosynthesis. Plant Cell 11: 207–221. Coupe, S.A., Sinclair, B.K., Watson, L.M., Heyes, J.A. and Eason, J.R. (2003) Identification of dehydration-responsive cysteine proteases during post-harvest senescence of broccoli florets. J. Exp. Bot. 54: 1045–1056. Demura, T. and Fukuda, H. (1993) Molecular cloning and characterization of cDNAs associated with tracheary element differentiation in cultured Zinnia cells. Plant Physiol. 103: 815–821. Demura, T. and Fukuda, H. (1994) Novel vascular cell-specific genes whose expression is regulated temporally and spatially during vascular system development. Plant Cell 6: 967–981. Demura, T., Tashiro, G., Horiguchi, G., Kishimoto, N., Kubo, M., Matsuoka, N., Minami, A., Nagata-Hiwatashi, M., Nakamura, K., Okamura, Y., Sassa, N., Suzuki, S., Yazaki, J., Kikuchi, S. and Fukuda, H. (2002) Visualization by comprehensive microarray analysis of gene expression programs during transdifferentiation of mesophyll cells into xylem cells. Proc. Natl Acad. Sci. USA 99: 15794–15799. Deyholos, M.K., Cordner, G., Beebe, D. and Sieburth, L.E. (2000) The SCARFACE gene is required for cotyledon and leaf vein patterning. Development 127: 3205–3213. Dharmawardhana, D.P., Ellis, B.E. and Carlson, J.E. (1992) Characterization of vascular lignification in Arabidopsis thaliana. Can. J. Bot. 70: 2238–2244. Diener, A.C., Li, H., Zhou, W., Whoriskey, W.J., Nes, W.D. and Fink, G.R. (2000) Sterol methyltransferase 1 controls the level of cholesterol in plants. Plant Cell 12: 853–870. Dolan, L., Janmaat, K., Willemsen, V., Linstead, P., Poethig, S., Roberts, K. and Scheres, B. (1993) Cellular organisation of the Arabidopsis thaliana root. Development 119: 71–84. Friml, J., Benkova, E., Blilou, I., Wisniewska, J., Hamann, T., Ljung, K., Woody, S., Sandberg, G., Scheres, B., Jürgens, G. and Palme, K. (2002) 1535 AtPIN4 mediates sink-driven auxin gradients and root patterning in Arabidopsis. Cell 108: 661–673. Friml, J., Veiten, A., Sauer, M., Weijers, D., Schwarz, H., Hamann, T., Offringa, R. and Jürgens, G. (2003) Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis. Nature 426: 147–153. Fukuda, H. (1992). Tracheary element formation as a model system of cell differentiation. Int. Rev. Cytol. 136: 289–332. Fukuda, H. (2000) Programmed cell death of tracheary elements as a paradigm in plants. Plant Mol. Biol. 44: 245–253. Fukuda, H. and Komamine, A. (1980) Establishment of an experimental system for the study of tracheary element differentiation from single cells isolated from the mesophyll of Zinnia elegans. Plant Physiol. 65: 57–60. Funk, V., Kositsup, B., Zhao, C. and Beers, E.P. (2002) The Arabidopsis xylem peptidase XCP1 is a tracheary element vacuolar protein that may be a papain ortholog. Plant Physiol. 128: 84–94. Geldner, N., Richter, S., Vieten, A., Marquardt, S., Torres-Ruiz, R.A., Mayer, U. and Jürgens, G. (2004) Partial loss-of-function alleles reveal a role for GNOM in auxin transport-related, post-embryonic development of Arabidopsis. Development 131: 389–400. Groover, A.T., Pattishall, A. and Jones, A.M. (2003) IAA8 expression during vascular cell differentiation. Plant Mol. Biol. 51: 427–435. Hamann, T., Mayer, U. and Jürgens, G. (1999) The auxin-insensitive bodenlos mutation affects primary root formation and apical-basal patterning in the Arabidopsis embryo. Development 126: 1387–1395. Hardtke, C.S. and Berleth, T. (1998) The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development. EMBO J. 17: 1405–1411. Hardtke, C.S., Ckurshumova, W., Vidaurre, D.P., Singh, S.A., Stamatiou, G., Tiwari, S.B., Hagen, G., Guilfoyle, T.J. and Berleth, T. (2004) Overlapping and non-redundant functions of the Arabidopsis auxin response factors MONOPTEROS and NONPHOTOTROPIC HYPOCOTYL 4. Development 131: 1089–1100. Hayashi, Y., Yamada, K., Shimada, T., Matsushima, R., Nishizawa, N.K., Nishimura, M. and Hara-Nishimura, I. (2001) A proteinase-storing body that prepares for cell death or stresses in the epidermal cells of Arabidopsis. Plant Cell Physiol. 42: 894–899. Hobbie, L., McGovern, M., Hurwitz, L.R., Pierro, A., Liu, N.Y., Bandyopadhyay, A. and Estelle, M. (2000) The axr6 mutants of Arabidopsis thaliana define a gene involved in auxin response and early development. Development 127: 23–32. Igarashi, M., Demura, T. and Fukuda, H. (1998) Expression of the Zinnia TED3 promoter in developing tracheary elements of transgenic Arabidopsis. Plant Mol. Biol. 36: 917–927. Inoue, T., Higuchi, M., Hashimoto, Y., Seki, M., Kobayashi, M., Kato, T., Tabata, S., Shinozaki, K. and Kakimoto, T. (2001) Identification of CRE1 as a cytokinin receptor from Arabidopsis. Nature 409: 1060–1063. Jang, J.C., Fujioka, S., Tasaka, M., Seto, H., Takatsuto, S., Ishii, A., Aida, M., Yoshida, S. and Sheen, J. (2000) A critical role of sterols in embryonic patterning and meristem programming revealed by the fackel mutants of Arabidopsis thaliana. Genes Dev. 14: 1485–1497. Jefferson, R.A., Kavanagh, T.A. and Bevan, M.W. (1987) GUS fusions: βglucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6: 3901–3907. Jürgens, G.M. (1994) Arabidopsis. In Embryos: Color Atlas of Development. Edited by Bard, J.B.L. pp. 7–22. Wolfe Publishing, London. Kamada, M., Yamasaki, S., Fujii, N., Higashitani, A. and Takahashi, H. (2003) Gravity-induced modification of auxin transport and distribution for peg formation in cucumber seedlings: possible roles for CS-AUX1 and CS-PIN1. Planta 218: 15–26. Kang, J. and Dengler, N. (2002) Cell cycling frequency and expression of the homeobox gene ATHB-8 during leaf vein development in Arabidopsis. Planta 216: 212–219. Kang, J., Tang, J., Donnelly, P. and Dengler, N. (2003) Primary vascular pattern and expression of ATHB-8 in shoots of Arabidopsis. New Phytol. 158: 443– 454. Koizumi, K., Sugiyama, M. and Fukuda, H. (2000) A series of novel mutants of Arabidopsis thaliana that are defective in the formation of continuous vascular network: calling the auxin signal flow canalization hypothesis into question. Development 127: 3197–3204. 1536 Tracing Arabidopsis seedling vessel development Lauvergeat, V., Rech, P., Jauneau, A., Guez, C., Coutos-Thevenot, P. and GrimaPettenati, J. (2002) The vascular expression pattern directed by the Eucalyptus gunnii cinnamyl alcohol dehydrogenase EgCAD2 promoter is conserved among woody and herbaceous plant species. Plant Mol. Biol. 50: 497–509. Li, L., Osakabe, Y., Joshi, C.P. and Chiang, V.L. (1999) Secondary xylemspecific expression of caffeoyl-coenzyme A 3-O-methyltransferase plays an important role in the methylation pathway associated with lignin biosynthesis in loblolly pine. Plant Mol. Biol. 40: 555–565. Lin, Q. and Northcote, D.H. (1990) Expression of phenylalanine ammonialyase gene during tracheary-element differentiation from cultured mesophyll cells of Zinnia elegans L. Planta 182: 591–598. Lohman, K.N., Gans, S., John, M.C. and Amasino, R.M. (1994) Molecular analysis of natural leaf senescence in Arabidopsis thaliana. Physiol. Plant. 92: 322–328. Mahonen, A.P., Bonke, M., Kauppinen, L., Riikonen, M., Benfey, P.N. and Helariutta, Y. (2000) A novel two-component hybrid molecule regulates vascular morphogenesis of the Arabidopsis root. Genes Dev. 14: 2938–2943. Marchant, A., Bhalerao, R., Casimiro, I., Eklof, J., Casero, P.J., Bennett, M. and Sandberg, G. (2002) AUX1 promotes lateral root formation by facilitating indole-3-acetic acid distribution between sink and source tissues in the Arabidopsis seedling. Plant Cell 14: 589–597. Milioni, D., Sado, P.E., Stacey, N.J., Domingo, C., Roberts, K. and McCann, M.C. (2001) Differential expression of cell-wall-related genes during the formation of tracheary elements in the Zinnia mesophyll cell system. Plant Mol. Biol. 47: 221–238. Milioni, D., Sado, P.E., Stacey, N.J., Roberts, K. and McCann, M.C. (2002) Early gene expression associated with the commitment and differentiation of a plant tracheary element is revealed by cDNA-amplified fragment length polymorphism analysis. Plant Cell 14: 2813–2824. Nakazono, M., Qiu, F., Borsuk, L.A. and Schnable, P.S. (2003) Laser-capture microdissection, a tool for the global analysis of gene expression in specific plant cell types: identification of genes expressed differentially in epidermal cells or vascular tissues of maize. Plant Cell 15: 583–596. Ochman, H., Gerber, A.S. and Hartl, D.L. (1988) Genetic applications of an inverse polymerase chain reaction. Genetics 120: 621–623. Sachs, T. (1981) The control of vascular development. Annu. Rev. Plant Physiol. 30: 313–337. Schrick, K., Mayer, U., Martin, G., Bellini, C., Kuhnt, C., Schmidt, J. and Jürgens, G. (2002) Interactions between sterol biosynthesis genes in embryonic development of Arabidopsis. Plant J. 31: 61–73. Sieburth, L.E. (1999) Auxin is required for leaf vein pattern in Arabidopsis. Plant Physiol. 121: 1179–1190. Solomon, M., Belenghi, B., Delledonne, M., Menachem, E. and Levine, A. (1999) The involvement of cysteine proteases and protease inhibitor genes in the regulation of programmed cell death in plants. Plant Cell 11: 431–444. Souter, M., Topping, J., Pullen, M., Friml, J., Palme, K., Hackett, R., Grierson, D. and Lindsey, K. (2002) Hydra mutants of Arabidopsis are defective in sterol profiles and auxin and ethylene signaling. Plant Cell 14: 1017–1031. Tranbarger, T.J. and Misra, S. (1996) Structure and expression of a developmentally regulated cDNA encoding a cysteine protease (pseudotzain) from Douglas fir. Gene 172: 221–226. Wan, L., Xia, Q., Qiu, X. and Selvaraj, G. (2002) Early stages of seed development in Brassica napus: a seed coat-specific cysteine proteinase associated with programmed cell death of the inner integument. Plant J. 30: 1–10. Erratum in Plant J. 31: 385–386. West, M. and Harada, J.J. (1993) Embryogenesis in higher plants: An overview. Plant Cell 5: 1361–1369. Yamamoto, R., Demura, T. and Fukuda, H. (1997) Brassinosteroids induce entry into the final stage of tracheary element differentiation in cultured Zinnia cells. Plant Cell Physiol. 38: 980–983. Ye, Z.H. and Droste, D.L. (1996) Isolation and characterization of cDNAs encoding xylogenesis-associated and wounding-induced ribonucleases in Zinnia elegans. Plant Mol. Biol. 30: 697–709. Ye, Z.H. and Varner, J.E. (1993) Gene expression patterns associated with in vitro tracheary element formation in isolated single mesophyll cells of Zinnia elegans. Plant Physiol. 103: 805–813. Ye, Z.H. and Varner, J.E. (1996) Induction of cysteine and serine proteases during xylogenesis in Zinnia elegans. Plant Mol. Biol. 30: 1233–1246. (Received June 28, 2004; Accepted August 8, 2004)
© Copyright 2026 Paperzz