BBRC Biochemical and Biophysical Research Communications 312 (2003) 663–669 www.elsevier.com/locate/ybbrc Reconstitution of vesicular transport to Rab11-positive recycling endosomes in vitro Rene Bartz, Corinne Benzing, and Oliver Ullrich*,1 Institut f€ur Biochemie, Universit€at Mainz, Becherweg 30, D-55128 Mainz, Germany Received 20 October 2003 Abstract Rab GTPases are key regulators of vesicular protein transport in both the endocytic and exocytic pathways. In endocytosis and recycling, Rab11 plays a role in receptor recycling to plasma membrane via the pericentriolar recycling compartment. However, little is known about the molecular requirements and partners that promote transport through Rab11-positive recycling endosomes. Here, we report a novel approach to reconstitute transport to immunoabsorbed recycling endosomes in vitro. We show that transport is temperature-, energy-, and time-dependent and requires the presence of Rab proteins, as it is inhibited by the Rabinteracting protein Rab GDP-dissociation inhibitor that removes Rab proteins from the membrane. Cytochalasin D, a drug that blocks actin polymerization, inhibits the in vitro assay, suggesting that transport to recycling endosomes depends on an intact actin cytoskeleton. Using an affinity chromatography approach we show the identification of Rab11-interacting proteins including actin that stimulate transport to recycling endosomes in vitro. Ó 2003 Elsevier Inc. All rights reserved. Keywords: Rab11; Intracellular transport; Endosomes; Recycling; In vitro transport assay Internalization of proteins and lipids in eukaryotic cells occurs by receptor-mediated endocytosis [1]. Receptor-bound ligands are concentrated at the plasma membrane, internalized into early (sorting) endosomes, and are then transported to late endosomes and lysosomes for degradation. Most receptors, after separation from the ligand, are recycled back to plasma membrane, either directly from sorting endosomes or via the pericentriolar recycling endosome. Early, late, and recycling endosomes are additionally involved in protein and lipid exchange with the trans-Golgi network (TGN). These transport steps are highly regulated implying a complex process by a specific molecular machinery which regulates steps like vesicle formation, vesicle motility, and specific docking/fusion of vesicles with the target membrane. Key regulators of transport are members of the family of Rab GTPases that have been shown to localize to specific subcellular compartments along the endocytic * Corresponding author. Fax: +49-40-42891-2681. E-mail address: [email protected] (O. Ullrich). 1 Present Address: Hochschule f€ ur Angewandte Wissenschaften Hamburg, Lohbr€ ugger Kirchstr. 65 D-21033 Hamburg, Germany. 0006-291X/$ - see front matter Ó 2003 Elsevier Inc. All rights reserved. doi:10.1016/j.bbrc.2003.10.172 and exocytic pathways, where they control distinct steps of intracellular transport (for review see [2,3]). Therefore, Rab proteins have been used as compartmentspecific markers and tools for the characterization of intracellular transport. In the endocytic pathway, Rab5 is localized to plasma membrane, clathrin-coated vesicles, and early endosomes, where it controls transport from plasma membrane to sorting endosomes as well as homotypic fusion of early endosomes. Rab11 has been found mainly associated with pericentriolar recycling endosomes regulating transport of internalized receptors (like the transferrin receptor) back to plasma membrane [4–6]. Overexpression of Rab11 mutants not only affects the morphology of the recycling endosome, it also influences recycling of transferrin receptor through this compartment [4]. Besides localizing to recycling endosomes, Rab11 has also been found on late Golgi and post-Golgi membranes, suggesting an additional role in transport from Golgi to plasma membrane [4,7–11] or in recycling to Golgi [12]. Rab proteins execute their manifold functions in formation, motility, and docking/fusion of vesicles through interactions with various effector proteins, e.g., 664 R. Bartz et al. / Biochemical and Biophysical Research Communications 312 (2003) 663–669 by recruiting them to cellular membranes during protein trafficking [2,3]. For Rab5 at least 20 cytosolic proteins were recently identified as interacting factors [13]. The Rab5 effector EEA1, for instance, is suggested to play a role in homotypic docking of early endosomes because of its two binding sites for Rab5. Vesicle motility may also be regulated by Rab effectors. In this process, actin and tubulin cytoskeleton serves as tracks for directed movement of vesicles. Rab5 was shown to regulate movement of early endosomes along microtubules through an effector that is still unknown [14]. Much less is known about Rab11 effectors and their precise function in regulation of transport through the perinuclear recycling endosome. We have therefore established a novel in vitro assay, reconstituting transport of transferrin receptor to recycling endosomes. This assay is based on our previous biochemical approach to analyze immunoisolated Rab11-positive recycling endosomes and Rab5-positive sorting endosomes [15]. In our current study, we show that in vitro transport to recycling endosomes is temperature-, ATP-, and timedependent and requires the presence of Rab proteins as well as an intact actin cytoskeleton. We further demonstrate the affinity purification of a fraction of Rab11-interacting proteins that stimulates transport to recycling endosomes. Materials and methods Materials. Polyclonal rabbit Rab11-antiserum was raised against full-length recombinant His6 -Rab11 expressed in Escherichia coli [7] and affinity purified essentially as previously described [16]. His6 RabGDI was expressed in E. coli and purified as described before [17]. Anti-actin antibody and cytochalasin D were purchased from Sigma (Munich, Germany). Magnetic beads (Dynabeads M-450) were obtained from Dynal (Hamburg, Germany). Reagents for the ATPregenerating and depletion system were purchased from Roche Applied Science (Mannheim, Germany). All other reagents were purchased from Sigma, Amersham Biosciences (Freiburg, Germany), and Gibco (Eggenheim, Germany). Cell culture. Media and reagents for cell culture were obtained from Gibco (Eggenheim, Germany). Chinese hamster ovary (CHO) cells were kindly provided by M. Zerial (Max Planck Institute for Molecular Cell Biology and Genetics, Dresden, Germany) and were grown in Ham’s F12 containing 10% (v/v) heat-inactivated fetal bovine serum (FBS), 100 U/ml penicillin, 100 lg/ml streptomycin, and 2 mM L -glutamine. Acridinium ester labeling of transferrin (Ac-Tfn). Acridinium C2 NHS ester (Biotrend, Cologne, Germany) was covalently bound to human holo-transferrin (Sigma, Munich, Germany) and purified on a PD-10 column (Pharmacia, Freiburg, Germany) according to the manufacturer’s protocol. Coupled transferrin was finally dialyzed against an iron saturation buffer (250 mM Tris, pH 8.2, 250 mM FeCl3 , 1 mM NaHCO3 , and 2 mM nitrilotriacetic acid) to ensure that transferrin is iron-loaded, followed by dialysis against PBS. Preparation of endosome-enriched fractions. Preparation of early and recycling endosome-enriched fractions using a step-flotation gradient was performed by a slightly modified protocol that was first described by Gorvel et al. [18]. Briefly, CHO cells were grown on 10 cm2 dishes, washed with PBS, and scraped with a rubber policeman. Cells were homogenized in homogenization buffer (250 mM sucrose, 3 mM imidazole, pH 7.4) and post-nuclear supernatants (PNSs) were prepared. PNS was adjusted to 40.6% sucrose, loaded into a centrifugation tube, then overlaid with 12 ml of 35% sucrose, 3 mM imidazole, pH 7.4, followed by 8 ml of 25% sucrose, 3 mM imidazole, pH 7.4, and finally filled up with homogenization buffer. Step gradients were centrifuged at 108,000g for 3 h at 4 °C. The endosome-enriched 35%/25% sucrose interphase was collected using a fractionator (Auto Densi-Flow, Labconco, Kansas City, USA). For the preparation of acridinium–transferrin (Ac-Tfn)-labeled endosomes, cells were washed twice with serum-free Ham’s F12 at room temperature and then depleted from serum transferrin by incubation with serum-free Ham’s F12 for 1 h at 37 °C and 5% CO2 , followed by labeling with serum-free Ham’s F12 containing iron-saturated Ac-Tfn (20 lg/ml) at 37 °C and 5% CO2 for 30 min. To remove cell surface-bound Ac-Tfn, cells were washed twice at 4 °C with PBS, PBS/0.5% bovine serum albumin (BSA), and PBS. For preparation of endosome-enriched fractions, cells were processed as described above. Preparation of anti-Rab11-coated magnetic beads for immunoadsorption. To prepare anti-Rab11-coated magnetic beads, affinity purified goat anti-rabbit IgG (Fc-specific) from Dianova (Hamburg, Germany) was coupled to p-toluene sulfonylchloride-activated Dynabeads M-450 by incubation of 10 lg/mg beads in 0.1 M borate buffer, pH 9.5, for 24 h at room temperature. Beads were then blocked and washed according to the manufacturer’s instructions. The amount of bound IgG was >80%. Finally, beads were incubated with affinity purified rabbit anti-Rab11 in PBS/0.5% BSA for 12 h at 4 °C, followed by three washes in PBS/0.1% BSA. Immunoadsorption and in vitro fusion assay. For immunoisolation of acceptor recycling endosomes, anti-Rab11-coated magnetic beads were incubated with the unlabeled endosome-enriched fraction (35%/ 25% sucrose interphase from the step-flotation gradient) at 60–80 lg protein/10 mg beads diluted in PBS/0.1% BSA at 4 °C for 4 h rotating end-over-end. Beads were then collected with a magnet and then resuspended in fusion buffer (12 mM Hepes, 75 mM potassium acetate, and 1.5 mM magnesium acetate, pH 7.3) containing 0.1% BSA. For in vitro fusion, beads were collected with a magnet on ice, the supernatant was removed, and immunoisolated unlabeled endosomes were incubated at 37 °C with Ac-Tfn-labeled donor endosomes in fusion buffer supplemented with 10 mg/ml rat liver cytosol and an ATP-regenerating system (1 mM ATP, 8 mM creatine phosphate, and 40 lg/ml creatine phosphokinase). After incubation, beads were collected and washed at 4 °C with 300 mM KCl/0.1% BSA followed by washing with PBS. To determine fusion of Ac-Tfn-labeled donor endosomes with immunoisolated unlabeled acceptor endosomes, membranes associated with beads were solubilized with PBS/0.5% Triton X-100 and flashlight chemiluminescence was measured in acridinium trigger solution (Biotrend, Cologne, Germany) for 2 s using a Berthold Luminometer LB 9501. Affinity purification of Rab11-interacting proteins. Forty milligrams recombinant His6 -Rab11 was coupled to 10 ml CNBr–Sepharose 4B beads according to the manufacturer’s instructions (Pharmacia, Freiburg, Germany). Rat liver cytosol was obtained by homogenizing rat livers in a Potter–Elvehjem in homogenization buffer (250 mM sucrose, 3 mM imidazole, pH 7.4) and centrifugation of the homogenate at 15,000g for 10 min at 4 °C. The supernatant was passed through a sterile gauze and the filtrate was centrifuged at 200,000g at 4 °C for 1 h. Supernatant was diluted to 10 mg/ml by adding one volume of 2 incubation buffer (40 mM Hepes, 150 mM potassium acetate, 3 mM magnesium acetate, and 2 mM DTT, pH 7.3) and incubated with Rab11-beads in batch for 1 h at 4 °C under slow rotation. Beads were transferred to a column and washed with 20 bed volumes of washing buffer (20 mM Hepes, 75 mM potassium acetate, 1.5 mM magnesium acetate, and 1 mM DTT, pH 7.3) followed by one wash with 20 bed volumes of high salt buffer (same buffer containing 250 mM NaCl). Bound proteins were eluted with one bead volume of elution buffer (20 mM Hepes, 75 mM potassium acetate, 1.5 mM magnesium acetate, R. Bartz et al. / Biochemical and Biophysical Research Communications 312 (2003) 663–669 3 M NaCl, and 1 mM DTT, pH 7.3). Eluate was precipitated with 20% TCA for 1 h on ice. After spinning at 14,000g for 20 min at 4 °C, supernatant was discarded and pellet was dissolved in 2 SDS-sample buffer containing 2% of 2-mercaptoethanol. Samples were boiled and analyzed by SDS–PAGE and Western blotting. To identify also strong interacting proteins that were not eluted, beads were boiled in SDS-sample buffer and loaded on SDS–PAGE. For testing the eluates in the fusion assay, eluted proteins were dialyzed against fusion buffer. Results Characterization of transport to recycling endosomes in vitro To investigate transport to Rab11-positive recycling endosomes we have developed an in vitro transport assay based on a recently established protocol for the immunoisolation of sorting and recycling endosomes using Rab proteins as compartment specific markers [15]. Isolated Rab5-positive sorting endosomes and Rab11-positive recycling endosomes differed in protein composition as well as morphology and were sequentially encountered by endocytosed transferrin. Here, in our novel transport assay, recycling endosomes immunoisolated with anti-Rab11-beads from unlabeled CHO cells were used as the acceptor fraction (Fig. 1). Beads-bound acceptor membranes were then incubated with donor endosomes labeled with acridinium–transferrin (Ac-Tfn) from cells that had internalized this endocytic marker. The fusion reaction was 665 performed in the presence of cytosol and an ATP-regenerating system under various conditions (temperature, ATP-depletion, time, different factors, and drugs). Transport to recycling endosomes was defined as transport of Ac-Tfn from the donor fraction to the immunoisolated acceptor fraction as measured by flashlight chemiluminescence using a luminometer (see Materials and methods). First, control experiments were performed to determine the specificity of the transport reaction. To exclude unspecific binding of labeled endosomes to magnetic beads, control beads without anti-Rab11 antibodies (IgG control) were used in parallel. Our results show efficient transport to anti-Rab11 coupled beads, while only little unspecific binding (7%) of donor endosomes was observed for control beads (Fig. 2A). To control for this minor unspecific binding all our experiments were performed with control beads lacking anti-Rab11 antibody (IgG control). The values from unspecific binding (IgG control) were subtracted from the values obtained with anti-Rab11 beads and calculated as percentage of maximum fusion. For a further characterization of the in vitro transport assay we analyzed the role of temperature and ATP for transport to recycling endosomes. In living cells, intracellular transport is inhibited strongly at 4 °C. Consistent with the in vivo data, in our in vitro assay transport was inhibited by approx. 90% in comparison to 37 °C (Fig. 2B). Then, in order to investigate the ATP-dependence of transport, we depleted cytosolic ATP using an ATP-depletion system. Our results show an inhibition of 50% after depletion of cytosolic ATP (Fig. 2C), reflecting the general requirement of ATP for membrane transport. Next, we investigated in vitro fusion for different periods of time. We observed that transport of Ac-Tfn to immunoisolated recycling endosomes first increased in a time-dependent manner and then reached a plateau at 30 min (Fig. 3A). Altogether, our results from the novel in vitro assay demonstrate that transport to recycling endosomes is temperature-, ATP-, and time-dependent, requirements that are comparable to those of other membrane transport assays. Transport to recycling endosomes requires Rab proteins and an intact actin cytoskeleton Fig. 1. In vitro assay to study endocytic traffic to recycling endosomes. The assay is based on fusion of acridinium–transferrin (*Tfn)-labeled endosomes (donor) with immunoisolated Rab11-positive recycling endosomes (acceptor). Acceptor endosomes are prepared from unlabeled CHO cells by immunoisolation of Rab11-positive recycling endosomes from an endosome-enriched fraction. Donor endosomes represent an endosome-enriched fraction obtained from cells labeled with *Tfn for 30 min at 37 °C. For the fusion reaction, donor endosomes are incubated with beads-bound acceptor endosomes in the presence of cytosol and an ATP-regenerating system at 37 °C. Beads are then washed thoroughly and fusion is analyzed by the amount of *Tfn transferred to beads-bound recycling endosomes, as measured by Flashlight-luminescence using a luminometer. Rab function requires the activity of additional Rabinteracting proteins that assist in the formation, transport, and docking/fusion of transport vesicles [2,3]. An important accessory factor is Rab-GDP-dissociation inhibitor (RabGDI) that extracts Rab proteins from membranes in their GDP-bound form, allowing their return to donor membranes, which is essential for multiple rounds of vesicle transport. Because of this ability RabGDI has been extensively used as a tool for studying Rab function in vivo and in vitro [9,19–25]. For 666 R. Bartz et al. / Biochemical and Biophysical Research Communications 312 (2003) 663–669 Fig. 2. Transport to recycling endosomes in vitro is specific and inhibited by low temperature and ATP-depletion. (A) Beads coated with anti-Rab11antibodies (anti-Rab11) or with anti-rabbit antibodies (IgG control) were used for immunoisolation of acceptor recycling endosomes. Beads were then incubated with donor endosomes for 30 min at 37 °C. (B) Anti-Rab11-beads with immunoisolated acceptor membranes were incubated with donor endosomes for 30 min at 37 or 4 °C. (C) Acceptor membranes immunoisolated with anti-Rab11 were incubated for 30 min at 37 °C with donor endosomes in the presence of cytosol and an ATP-regenerating system (control) or an ATP-depletion system (ATP-depletion). Samples were processed as described in Fig. 1. Here the mean of three experiments is shown and the error bars represent the standard deviation. Fig. 3. In vitro transport to immunoisolated recycling endosomes is time-dependent and inhibited by RabGDI and cytochalasin D. (A) Immunoisolated Rab11-positive recycling endosomes were incubated with donor endosomes at 37 °C for increasing periods of time and processed as described in Fig. 1. (B,C) Recycling endosomes immunoisolated with anti-Rab11-antibodies were incubated with donor endosomes for 30 min at 37 °C in the presence or absence (control) of (B) 10 lM RabGDI or (C) 20 lM cytochalasin D and processed as described in Fig. 1. The mean of three experiments is shown and the error bars represent the standard deviation. transport to recycling endosomes in vitro, the addition of 10 lM RabGDI to the reaction mixture reduced transport to recycling endosomes to approx. 50% in comparison to the control (Fig. 3B). This result suggests that Rab proteins extracted from endosomal membranes by RabGDI are required for efficient transport to recycling endosomes. Vesicular transport involves elements of the cytoskeletal system by serving as tracks for directed movement of vesicles and recent studies have implicated Rab proteins in this movement [26,27]. Rab27a regulates the movement of melanin containing vesicles by interacting with the actin motor protein myosin Va [28] and Rab11 was found to interact with myosin Vb [29]. To investigate the role of actin cytoskeleton in transport to recycling endosomes in vitro, we tested the effect of cytochalasin D that leads to the depolymerization of actin filaments. Addition of the drug to the assay system reduced transport to approx. 40% (Fig. 3C), suggesting a role of actin filaments in transport to recycling endosomes. This finding is supported by our previous results, demonstrating the enrichment of actin on immunoisolated Rab11-positive recycling endosomes compared to Rab5-positive sorting endosomes [15]. R. Bartz et al. / Biochemical and Biophysical Research Communications 312 (2003) 663–669 Identification of Rab11-interacting proteins that stimulate transport to recycling endosomes Since actin appears to play an important role in transport to recycling endosomes, we next investigated whether this effect might be mediated through an interaction with Rab11. We therefore used an affinity chromatography approach to search for possible Rab11-binding molecules as actin and other potential interacting proteins. Purified recombinant His6 -Rab11 was immobilized to CNBr–Sepharose beads and incubated with rat liver cytosol at 4 °C. Beads were then extensively washed and proteins were eluted under highsalt conditions. Eluted fractions were TCA-precipitated and analyzed by SDS–PAGE followed by silver staining and Western blotting. To analyze also the proteins remaining bound to Rab11-beads even after high salt elution, beads were boiled in SDS-sample buffer. Several protein bands could be detected after SDS–PAGE and silver staining in the eluate of Rab11-beads but not in that of control beads lacking Rab11 (Fig. 4A). Among these proteins actin was identified by Western blotting, while no actin was found in control beads (Fig. 4B). Actin could be partially eluted from the beads, however, 667 most actin remained strongly bound to Rab11-beads, even after high salt incubation. These results demonstrate that a number of cytosolic proteins bind directly or via additional factors to Rab11. Rab-interacting proteins were shown to stimulate or inhibit particular steps of protein transport in vivo and in vitro [2,3]. We therefore analyzed whether the Rab11interacting proteins from the affinity chromatography would affect transport to Rab11-positive recycling endosomes. The salt-extracted protein fraction was first dialyzed against fusion buffer and then tested in our transport assay. Indeed, there was a clear stimulation of transport of approx. 40% by the fraction (Fig. 4C), indicating the presence of Rab11-binding factors that are involved in the regulation of trafficking to recycling endosomes. Discussion Although uptake and recycling of transferrin has been studied extensively in vivo, relatively little is known about the underlying molecular mechanisms and molecules that regulate transport through the recycling Fig. 4. Cytosolic proteins affinity purified with immobilized His6 -Rab11 contain actin and stimulate transport to recycling endosomes in vitro. (A,B) His6 -Rab11 was expressed in E. coli, purified, and covalently bound to CNBr-activated Sepharose 4B. His6 -Rab11-beads or control beads (minus His6 -Rab11) were incubated with rat liver cytosol for 1 h at 4 °C, beads were extensively washed, and bound proteins were eluted with high salt buffer. Cytosol (cytosol), beads after elution boiled in SDS-sample buffer (boiled beads), and eluted proteins (eluate) were separated by SDS–PAGE and analyzed by (A) silver staining or (B) Western blotting using antibodies against actin. (C) The eluted fractions from control beads and His6 -Rab11beads were dialyzed against fusion buffer and added to a standard fusion reaction mix (30 min at 37 °C). Here the mean of three experiments is shown and the error bars represent the standard deviation. 668 R. Bartz et al. / Biochemical and Biophysical Research Communications 312 (2003) 663–669 endosome. A regulator of the recycling pathway is Rab11 and its function(s) depend(s) on the activity of probably a large number of Rab11-interacting proteins. Although some of them have been identified only little is known about their function [29–36]. Therefore, if one assumes for Rab11 a similar number of accessory factors as they were found for Rab5 [13], then we have to expect additional Rab11-binding molecules to be found supporting additional Rab functions. To address these questions in vitro, we have established a novel cell-free assay to reconstitute endosomal transport to recycling endosomes. Donor endosomes labeled with Ac-Tfn are mixed with Rab11-positive immunoisolated recycling (acceptor) endosomes in buffer containing cytosol and an ATP-regenerating system. After the fusion reaction at 37 °C, beads-bound acceptor endosomes are washed extensively and transferred Ac-Tfn is measured using a luminometer. Our results show that the assay exhibits the typical criteria of an in vitro system to study membrane transport. First, transport is specific, since efficient transfer of Ac-Tfn from donor endosomes to beads only occurred when anti-Rab11-immunoisolated recycling endosomes were present, but not to control beads. Second, transport was clearly temperature-dependent as it was strongly inhibited at 4 °C. Third, there was an ATP-dependency of transport. In the presence of an ATP-depletion system, transfer of Ac-Tfn to acceptor recycling endosomes was significantly inhibited. While low temperature strongly reduced transport as observed in vivo, the removal of ATP resulted only in a partial (50%) inhibition of transport. Our finding is consistent with other transport assays, where no complete inhibition of transport was found in the absence of ATP. This suggests that some steps of the multiple step process of fusion might be ATP-dependent while others are not. When the fusion reaction is initiated, a proportion of endosomes could be already primed for fusion and beyond the energy-dependent step. Fusion of donor and acceptor endosomes exhibited a time-dependent increase reaching a plateau at 30 min of time. The plateau in this time course is likely to reflect quantitative fusion of fusion-competent endosomes as well as depletion of rate limiting factors from cytosol that are essential for docking and fusion. Membrane transport depends on the presence of regulatory Rab proteins [2,3]. We therefore added RabGDI to the transport assay as a well-established inhibitor of Rab function based on the ability of RabGDI to extract Rab proteins in their GDP-bound state from membranes [9,19–23]. RabGDI reduced transport to approx. 50% suggesting a Rab-mediated regulation of transport to recycling endosomes. Consistent with other transport assays [19,37], inhibition of transport by RabGDI was only partial, probably because of already primed endosomes that contain Rab proteins in their active GTP-bound form as well as other proteins needed for fusion. These GTP-bound Rab proteins would not be extracted by RabGDI from their membranes and would stimulate directly or indirectly vesicular fusion. Recently, we have shown by immunoisolation that actin is present predominantly on Rab11-positive recycling endosomes, while little actin was found on Rab5-positive sorting endosomes [15]. Actin has been functionally linked to the cellular localization of organelles as well as vesicular transport. The movement of vesicles along the actin cytoskeleton is powered by members of the myosin protein family. Using a yeast two-hybrid screening an interaction of Rab11 with the actin motor myosin Vb was detected, suggesting a role of Rab11 in actin mediated transport to recycling endosomes [29]. Our data presented here also support an involvement of the actin cytoskeleton in intracellular transport to perinuclear recycling endosomes, possibly by interacting directly or via an accessory factor with Rab11. First, cytochalasin D, which blocks actin polymerization, inhibited trafficking of Ac-Tfn to recycling endosomes in vitro. 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