Nephrol Dial Transplant (2014) 29: 1460–1467 doi: 10.1093/ndt/gft473 Advance Access publication 27 November 2013 NDT Perspectives Measuring the quality of renal care: things to keep in mind when selecting and using quality indicators Sabine N. van der Veer1,2, Wim van Biesen2,3, Cécile Couchoud4, Charles R.V. Tomson5 and Kitty J. Jager1,6 1 Department of Medical Informatics, Academic Medical Center, Amsterdam, The Netherlands, 2European Renal Best Practice (ERBP) Methods Support Team, University Hospital Ghent, Ghent, Belgium, 3Renal division, University Hospital Ghent, Ghent, Belgium, 4REIN Registry, Agence de la biomédecine, Saint Denis la Plaine Cedex, France, 5The Richard Bright Kidney Unit, Southmead Hospital, Bristol, UK and 6ERA-EDTA Registry, Academic Medical Center, Amsterdam, The Netherlands Correspondence and offprint requests to: S.N. van der Veer; E-mail: [email protected] and the public [1–6]. Rather than focusing on individual clinicians, these measurement initiatives evaluate systems of healthcare delivery based on a set of quality indicators. Indicators can be categorized into different types, all with their own advantages and disadvantages, which we describe and illustrate in the first section of this paper. There, we also discuss how the aim of an initiative determines how the pros and cons of those indicator types should be weighed. We argue that this should be done with care to avoid potential unintended consequences, especially within initiatives that aim to facilitate external judgement of care quality. In the second section we suggest using ‘causal chains’ as a potential point of departure when composing a set of interrelated indicators. In a causal chain, each element (i.e. an aspect of care to be translated into an indicator) is connected to the next element by an evidence-based link. We also provide some examples of indicator sets currently used for quality of care measurement in nephrology. Finally, in the last section we advocate that–apart from (surrogate) outcome indicators—process indicators should also be adjusted for case mix in order to enable correct interpretation of clinical quality measurements. A B S T R AC T This educational paper discusses a variety of indicators that can be used to measure the quality of care in renal medicine. Based on what aspect of care they reflect, indicators can be grouped into four main categories: structure, process, surrogate outcome and outcome indicators. Each category has its own advantages and disadvantages, and we give some pointers on how to balance these pros and cons while taking into account the aim of the measurement initiative. Especially within initiatives that link payment or reputation to indicator measurement, this balancing should be done with utmost care to avoid potential, unintended consequences. Furthermore, we suggest consideration of (i) a causal chain— i.e. subsequent aspects of care connected by evidence-based links—as a starting point for composing a performance indicator set and (ii) adequate case-mix adjustment, not only of (surrogate) outcomes, but also of process indicators in order to obtain fair comparisons between facilities and within facilities over time.Keywords: nephrology, quality indicators, quality of health care INTRODUCTION MEASURING THE QUALITY OF CARE: BASIC CONCEPTS AND DEFINITIONS Initiatives worldwide are measuring the type and quality of renal care in order to identify practice patterns, engage and support clinicians in improving the quality of their local care delivery system or to provide transparency to policy-makers © The Author 2013. Published by Oxford University Press on behalf of ERA-EDTA. All rights reserved. Measures versus indicators We can define measures for quantifying the things we see in the world surrounding us. For the human body, for 1460 example, you can measure its weight in kilograms. To determine whether it concerns a healthy weight, you can relate it to the body’s height in centimetres by calculating the body mass index, or—for more accurate information—take into account waist–hip ratio, skinfold thickness and body fat distribution. All are measures of the human body. ‘Quality of care’ or ‘clinical performance’, however, cannot be put on a scales, held against a measuring tape, or scanned with a device to analyse its composition. Hence, there are no direct measures of the quality of care because—unlike the human body—it is an abstract concept that is not part of our physical world. To quantify this abstract concept, we are thus dependent on the measurable aspects of health care that are only an indication of its quality. This paper is about these measurable aspects, to which we will further refer as ‘quality indicators’ or ‘clinical performance indicators’. Clinical correlates and surrogate outcomes as indicators of clinical performance Clinical correlates are clinical or laboratory signs that can be objectively measured and are associated with disease activity, but not necessarily causally related to patient outcomes. The special subgroup of clinical correlates that is thought to have a causal relationship with a subsequent health outcome is referred to as surrogate outcomes [10]. When carefully selected and validated, indicators based on clinical correlates and surrogate outcomes may be useful as they are more easily obtained than outcome indicators [11], while also being more directly related to patients’ health status than process indicators. However, parameters are often called ‘surrogates’ without Clinical performance measurement in renal Indicator definition: selecting a numerator and a denominator Many performance indicators are defined as the proportion of a numerator—specifying how many times preferred care was provided or events occurred—relative to a denominator reflecting the number of patients eligible or at risk. Selecting a different numerator or denominator affects the final indicator value, and thus, the conclusion on clinical performance. Box 1 contains an illustrative example, which shows how one may account for the potential influence of patient characteristics and of care delivered by healthcare professionals other than nephrologists. What makes a good quality indicator? The perfect quality indicator does not exist as each has its own advantages and disadvantages (Table 1) [11, 18, 19]. How to balance these pros and cons depends on the aim of the measurement initiative. There are three types of initiatives [9, 20, 21]. First, performance-monitoring initiatives, such as (inter)national renal registries and the Dialysis Outcomes and Practice Patterns Study programme, which regularly review clinical performance based on a combination of structure, process and (surrogate) outcome indicators. They aim to formulate hypotheses on the relationships between the different aspects of care and to identify trends over time in practices and outcomes. This requires indicators that can be measured reliably in large populations over a long time period, accompanied by information on potential confounders. Secondly, formative initiatives focus on internal quality control,—i.e. without external interference—and improving care processes [3, 4, 22]. Indicators used within such initiatives should be especially sensitive to changes in performance over time, easy to interpret and a straightforward basis for deciding which QI initiatives should be undertaken. Lastly, summative initiatives are characterized by external judgement of care (by governments, payers, patients, etc.) linked to direct consequences for payment or reputation [5, 6, 23]. Selection and use of indicators for this purpose should be done with the greatest possible care in order to avoid unjustified sanctions or rewards. Chassin et al. [24] suggested that in this case, indicators should reflect processes of care that (i) have a strong evidencebased link to relevant outcomes of care; (ii) can be measured reliably; (iii) are proximate to the desired outcome and (iv) 1461 NDT PERSPECTIVES Indicators referring to healthcare structures, processes and outcomes Besides being abstract, quality of care is also a multidimensional construct. One can distinguish three classic dimensions, resulting in three categories of quality indicators: those referring to structures, to processes and to outcomes of health care [7]. Structure indicators refer to characteristics of the healthcare setting that affect a system’s ability to meet healthcare needs of (a group of ) patients [8]. Often they reflect the availability of services or resources. Examples are the availability of a dedicated outpatient vascular access service, the renal nurse-to-patient ratio or having a nutritional patient counselling programme in place. Process indicators refer to the care that is actually being delivered, for instance, the timely performance of non-invasive ultrasonography of vessels in haemodialysis (HD) patients listed for vascular access creation, or hepatitis B vaccination in seronegative patients. Lastly, outcome indicators—either observed or patient reported [9]–involve the ultimate health status of the patient or the occurrence of (adverse) events after having received treatment. Examples of observed outcome indicators are cardiovascular death in patients with end-stage renal disease (ESRD) and bacteraemia in HD patients with a tunnelled catheter, whereas the quality of life after kidney transplantation and satisfaction with dialysis care are typical patient-reported outcome indicators. a robust evaluation of their relation with clinical endpoints in large, well-designed studies that measure both surrogate and ultimate patient outcomes. For example, based on observational data the degree of proteinuria seems a surrogate for the decline of renal function [12, 13]. Yet, there is still debate whether aiming for a reduction in proteinuria indeed slows progression to ESRD [14, 15]. In addition, the validity of surrogate outcomes is specific to the context (e.g. type of patients, targeted outcomes) in which they were evaluated, making their interpretation complex [10]. For example, lowering blood pressure was shown to decrease cardiovascular events in patients with diabetes [16], but this was less clear for diabetes patients who also had nephropathy [17]. Box 1. Calculation of the percentage of patients receiving HD via an arteriovenous fistula as an indicator of dialysis centres’ performance—fictitious example Assume we have the following vascular access data available: All ages All incident HD patients 536 Screened for fistula suitability at least once before start dialysis 418 Functioning AV fistula at start dialysis 171 Functioning AV fistula at day 91 of dialysis 240 We could now calculate the following values for the ‘same’ indicator by selecting different numerators and denominators: Indicator Numerator Denominator A 171 536 B 240 536 C 227 429 D 418 536 <80 years 429 364 156 227 Indicator value (%) 32 45 53 78 Indicator A Dividing the number of patients with an AV fistula at the start of dialysis as the numerator by the total number of incident HD patients as the denominator results in an indicator value of 32%. However, for part of the patients starting without a fistula, maturation time may have been too limited due to late referral by general practitioners. One could argue that it is unfair to attribute these cases to the clinical performance of the dialysis centre. Indicator B To limit the effect of late referrals, one could use the number of patients with an ‘AV fistula at Day 91 of dialysis’ as the numerator instead. This increases the indicator value to 45%. NDT PERSPECTIVES Indicator C Patient factors may impact on a centre’s AV fistula rate. For example, in older patients it may be more difficult to establish a functioning fistula due to increased risk of maturation failure and access-related complications. Also, elderly patients might value the expected survival gain from dialysis via a fistula less than younger people. Instead of ascribing the effect of age to a centre’s performance, we could exclude octogenarians from the equation and focus on the 429 incident HD patients <80 years of age. This further increases the indicator value to 53%. Indicator D To avoid centres from using older age alone as an exclusion criterion for even considering patients for AV fistula creation, one could calculate the percentage of all incident HD patients that were screened for fistula suitability at least once before starting dialysis. This indicator is less affected by other healthcare providers and patient-related factors than indicators A–C. However, it only reflects a first step of fistula creation and not the required subsequent ones. Also, it is difficult to determine whether an improved value of this indicator means that a centre changed the way of delivering vascular access care, or that they just checked more ‘fistula screening performed’ boxes. AV, arteriovenous; HD, haemodialysis. have minimal or no unintended consequences. Additionally, summative initiatives should monitor if their linking performance to (financial) incentives does not result in physicians applying a ‘one-size-fits-all’ policy just to get high indicator scores. For example, reimbursing HD via an arteriovenous (AV) fistula at a higher rate than through a catheter—which is the case in the UK—might drive dialysis centres to construct fistulae while ignoring the potential harm, e.g. in older patients [25]. To illustrate how to assess the ‘goodness’ of an indicator for specific purposes, let us look at the ‘percentage of patients with CKD (Stage 3–5; not on dialysis) who had a fasting lipid profile performed at least once in the last year’ [23]. It seems suitable for a formative purpose: being a process indicator; even small sample sizes are expected to be sufficient for detecting a change in performance [11]. Moreover, since it is hardly influenced by patient-related factors (such as demographics, patient preference) its interpretation is rather straightforward as being under the influence of care providers. Also, it incorporates the preferred clinical action ( performing the fasting 1462 lipid profile), thus revealing the focus of actions needed to improve the indicator. When assessing its use for a summative purpose, two of the Chassin criteria appear satisfied: availability of cholesterol and triglyceride values in the laboratory system would be a reliable way to determine if the profile indeed has been performed (criterion 2); and performing the lipid profile is unlikely to be harmful in itself (criterion 4). However, criterion 1 is only partly fulfilled: the indicator was derived from a National Kidney Foundation Kidney Disease Outcomes Quality Initiative guideline recommendation for which the strength of the evidence base was graded as only ‘moderate’ [26]. Finally, criterion 3 is violated because many clinical follow-up actions need to be executed correctly after performing the profile in order to establish improvements that are noticeable to patients, i.e. there is no direct link between the indicator and the desired outcome. So, it is questionable if rewarding or punishing healthcare providers based on this indicator is fair and will actually improve the quality of care. S.N. van der Veer et al. Table 1. Categories of quality indicators and their main (dis)advantages Category Refer to Structures Healthcare setting characteristics that affect the systems’ ability to meet health care needs of patients Processes Examples Advantagesa Disadvantagesa • • Easy to record • Difficult and costly to change • Not influenced by patient case mix • Additional information required to understand the indicator • Renal nurse-to-patient ratio • Having nutritional patient counselling programme in place Hepatitis B vaccination in HD • Sensitive to a change in • Clinical relevance is subject to changing trends practice patients Care that is actually being delivered • • • Clinical correlates Objectively measured clinical or laboratory signs associated with disease activity, but not causally related to outcomes Availability of dedicated outpatient vascular access service • • • Surrogate Clinical correlates that have a causal outcomes relationship with outcomes Outcomes Ultimate health status • Prescription of ACE inhibitors • Limited delay between • delivering care and in CKD patients with measuring performance • hypertension and proteinuria • Incorporate preferred Performing non-invasive ultrasonography of clinical action vessels in HD patients listed for vascular access creation • More directly related to • LDL cholesterol ultimate health status Blood pressure than process indicators Serum phosphorus • More sensitive to • differences in quality of care than outcomes Directly influenced by patient preference Process indicators that regard the performance of tests do not reflect if necessary subsequent clinical actions are performed. Requires incorporation of a target value/range, which is often subject to discussion Influenced by patient factors (e.g. genetic profile, environmental factors, compliance to treatment) • Relevant and noticeable • Long observation period and large to patients sample size required to detect change • Occurrence of bacteraemia in HD patients with a tunnelled catheter • Provide global assessment of performance • Quality of life after kidney transplantation • Satisfaction with dialysis care • Influenced by many other factors, e.g. patient case mix, other care providers • Potential reasons for ‘underperformance’ are not immediately obvious ACE, angiotensin-converting-enzyme; CKD, chronic kidney disease; HD, haemodialysis; LDL, low-density lipoprotein; PTH, parathyroid hormone. a Based on refs [11, 18, 19]. I N D I C AT O R S A S P A R T O F A C L I N I C A L P E R F O R M A N C E I N D I C AT O R S E T No single indicator covers all relevant dimensions of clinical performance. Also, different stakeholders—clinicians, patients, payers, policy-makers—may value certain aspects of care differently. Therefore, measurement initiatives are commonly built around a set of indicators to create a comprehensive picture of the quality of care provided. Meaningful structure indicators for these sets are likely to be found in systematic reviews of strategies to implement best practices into daily renal care [27, 28], or in individual observational studies on the association between healthcare facility characteristics and (surrogate) outcomes [29, 30]. For identifying process and surrogate outcome indicators Grade ‘1A’ or ‘1B’ recommendations from rigorously developed renal clinical practice guidelines may be a useful starting point [31]. These are the recommendations, which were based on evidence of high-to-moderate quality and which are expected to apply to and be preferred by the majority of patients [32]. Finally, selection of relevant outcome indicators should be primarily guided by the purpose of the provided care. For example, when measuring the quality of care for CKD patients Clinical performance measurement in renal (Stages 3–5; not on dialysis), progression to ESRD is one of the potential outcome indicators, whereas the quality of vascular access care may be reflected in the number of access-related infections and hospitalizations. Evaluating causal chains in daily practice ‘Causal chains’ can be used as a starting point for composing an indicator set [33]. Figure 1 shows an example of such a chain for managing cardiovascular risk in adult CKD patients not on dialysis. It consists of four elements, each belonging to a different (indicator) category; per element, we suggested a potential indicator. The links between the elements have been evaluated in (a meta-analysis of) randomized controlled trials (RCTs) [34–36]. The main advantage of building an indicator set around causal chains is that it increases the probability that a focus on improving structure, process and surrogate outcomes within the chain actually results in a better patient outcome. Also, the use of a chain facilitates the evaluation of the chain in the context of daily care in addition to previous evaluations of the links within the often rather controlled contexts of RCTs [37]. For example, the MASTERPLAN [34] and the SHARP studies [35] excluded patients who were reluctant to change drug therapy, and poorly compliant to clinic visits or prescribed 1463 NDT PERSPECTIVES Cardiovascular mortality in CKD patients NDT PERSPECTIVES F I G U R E 1 : Causal chain of reducing the cardiovascular risk in adult CKD patients not receiving dialysis, including examples of potential performance indicators. medication, respectively. Although often excluded in RCTs, non-compliant patients are not uncommon in daily practice. Therefore, it would be of interest to include this subpopulation when monitoring performance, and evaluate if, e.g. having a nurse practitioner is still equally effective in improving statin prescription. However, strictly speaking, the causal chain is not generalizable to non-compliant patients. Some initiatives address this by having ‘patient decline’ and ‘other patient reasons’ as criteria to exclude patients from the denominator when calculating indicators [23], but allowing this ‘exception coding’ is controversial. First, because it creates an opportunity for healthcare providers to ‘game’ indicator values by excluding all patients that did not meet the targets; especially within summative initiatives there might be an incentive to do this [38]. And secondly because it may seem to relieve physicians from the responsibility to make an effort to convince patients to take their medication or stop smoking [39]. So, the practice of exception coding at least warrants close monitoring to determine whether its use was appropriate. For example, by identifying providers with outlying exception rates or—more qualitatively— by reviewing the medical records of samples of excluded patients. Indicator sets in nephrology: two examples An example of a set used for performance monitoring is the NephroQUEST indicator data set, which resulted from the NephroQUEST project initiated in 2007 by the European Renal Association–European Dialysis and Transplant Association (ERA–EDTA) Registry with support from the European Union [40]. Prior to NephroQUEST, the Registry primarily collected data on case mix and outcomes of patients on renal replacement therapy (RRT). In order to also enable the 1464 composition of other types of indicators, clinical and registry experts defined additional data items (Box 2), using international renal guidelines as the starting point. To increase the set’s sustainability over a longer period of time, the data item definitions leave room to incorporate treatment targets at a later stage because recommendations on which targets to achieve are constantly evolving. As the influence of advancing insights also applies to processes of care, the number of items to compose process indicators is limited. The set lacks items related to characteristics of dialysis centres for composing structure indicators, which may be a valuable addition in the future. For instance, frequent routine multidisciplinary conferences, or clinical decision support systems for drug prescription have been suggested to positively affect processes and outcomes of renal care [28, 29, 41]. The extended ERA-EDTA Registry data set may be used for evaluating parts of causal chains in daily practice. For example, by assessing the association between achieving a certain target and survival in European RRT patients or by investigating the relationship between potential surrogate and final outcomes. Moreover, the data set enables exploring practice patterns among European dialysis centres, and for subsequently determining between-centre or country variation. The Centers for Medicare and Medicaid Services (CMS) indicator set is an example of a set used for formative as well as summative purposes. Since 2000, CMS have been measuring clinical performance of dialysis centres in the USA. While their first guideline-based indicator set consisted of 16—mostly process—indicators [42], their 2010 report presented an extension of the set to a total of over 50 indicators, including also potential surrogates (e.g. haemoglobin) and outcome indicators (e. g. HD access-related infections) [22]. Apart from formatively S.N. van der Veer et al. Box 2. ERA-EDTA NephroQUEST items registry data set, including the additional Structures [None] Processes • Treatment with ESAs • Dialysis duration and frequencya • Vascular access typea (Potential) Surrogate outcomes • Systolic and diastolic blood pressure • Serum albumin • C-reactive protein • Total cholesterol; high-density lipid cholesterol; triglycerides • Haemoglobin; ferritin • Calcium; phosphorus; parathormone • Urea clearance • Creatinine clearanceb Outcomes • Treatment modalityc • Time on RRTc,d • Survival on RRTc,d • Source of kidney donorc • Graft survival of kidney transplantsc,d Patient case mix • Age; genderd • Height; dry weight; major amputations • Smoking status • Primary renal diseased Collected only in the context of HD. Collected only in the context of peritoneal dialysis. c Already collected prior to the NephroQUEST project. d Derived from items: date of first RRT; date/type of event or treatment; cause of death. b supporting QI efforts among dialysis providers, the CMS clinical performance measurement project also aims to enable patients to participate in making healthcare decisions. This summative aspect of the initiative has been further emphasized since the start of the CMS Quality Incentive Program [6], which links four process indicators to reimbursement: percentage of erythropoietin-stimulating agent (ESA)-treated patients with haemoglobin >12 g/dL (with higher percentages getting lower quality scores); percentage of patients with a urea reduction ratio (URR) ≥65%; percentage of patients using a bipuncture AV fistula during the last treatment of the month; percentage of HD patients with an intravenous catheter in use for 90 days before the last dialysis session. However, Fishbane et al. clearly showed that none of these indicators fulfil all four Chassin criteria, which makes their use for summative purposes by CMS questionable [6]. I N T E R P R E T I N G R E S U LT S O F P E R F O R M A N C E M E A S U R E M E N T S : A D J U S T I N G F O R P AT I E N T C H A R AC T E R I S T I C S Besides the clinical quality of the provided care, characteristics of the patient population can significantly affect the results of clinical performance measurements. For example, patient factors may explain a substantial part of differences between CMS dialysis centres in achievement of a target URR ≥65% Clinical performance measurement in renal CONCLUSION In this paper, we distinguished indicators referring to structures, processes, surrogate outcomes and outcomes of care. No single indicator provides a comprehensive picture of clinical performance. Therefore, indicators ought to be part of an indicator set that ideally covers elements of care that are connected by evidence-based links. The advantages and disadvantages of the different indicators should be balanced depending on the aim of the measurement initiative. This is particularly important within summative initiatives, which directly link external judgement to consequences for payment or reputation. For this purpose, particular process indicators may be worth considering, but only if they fulfil the criteria for a suitable ‘accountability indicator’. However, we did not find any 1465 NDT PERSPECTIVES Comorbidities at start RRTd a [43]. For this reason, the values of performance indicators should be adjusted for patient factors as adequately as possible to prevent interpretation of differences in case mix as differences in performance. The ERA-EDTA indicator data set (Box 2) contains patient characteristics frequently used for risk adjustment in RRT populations. However, unknown, and thus unmeasured, case-mix factors hamper complete risk correction. This is known as the ‘case-mix fallacy’ [9]. In addition, registration of risk factors, such as comorbidities, might differ substantially between nephrologists and dialysis centres, either unintended or intended [44]. Risk adjustment usually seems to concern (surrogate) outcome indicators. Although structure indicators, like having a ‘nurse practitioner trained in cardiovascular risk management’ (Figure 1), are rarely affected by patient case mix, process indicators may be. Sicker patients need more (complex) care, which can justify a deviation from care as described in guidelines, as well as increase the susceptibility of their treatment to errors [9]. In addition, process indicators are more directly influenced by patient preference than outcome indicators. For example, older CKD patients often have more comorbidities and are being prescribed a larger variety of medications compared with their younger, healthier counterparts. A higher degree of multimorbidity and polypharmacy in such patients makes it more likely that the nephrologist will decide not to prescribe statins either to avoid adverse interactions with drug treatments recommended by different guidelines [45], or because the patient prefers not to take ‘yet another pill’. Also, it increases the chance that statins are omitted unintentionally from the drug regimen. So, in Figure 1, not only the (surrogate) outcomes ‘LDL cholesterol level’ and ‘risk of cardiovascular events’, but also the process indicator ‘percentage of patients being prescribed statins’ requires case-mix adjustment in order to be interpreted correctly as an aspect of the quality of care provided to CKD patient who are not on dialysis. Unfortunately, the lack of accepted risk-adjustment methods on the one hand, and mostly unavailable patient preference data on the other hand hinder adequate adjustment of process indicators for patient factors. The fact that this impedes fair comparisons between facilities and within facilities over time is especially problematic when using such process indicators for summative purposes. examples within renal medicine that would meet such criteria. When additionally taking into account the need for and difficulty of adequate case-mix adjustment of process indicators, we feel that it is questionable for clinical performance indicators to be used for summative purposes at all. Instead, measurement initiatives should rather focus on facilitating observational research and monitoring trends over time, and aim to improve patient care whilst avoiding unwarranted penalization of healthcare professionals. C O N F L I C T O F I N T E R E S T S TAT E M E N T None declared. 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JAMA 2005; 294: 716–724 Received for publication: 19.9.2013; Accepted in revised form: 10.10.2013 Nephrol Dial Transplant (2014) 29: 1467–1474 doi: 10.1093/ndt/gft492 Advance Access publication 22 December 2013 Integrated genomics and metabolomics in nephrology Dorothee Atzler1,2, Edzard Schwedhelm1,2 and Tanja Zeller2,3 1 Department of Clinical Pharmacology and Toxicology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany, 2German Center for Cardiovascular Research (DZHK), Partner Side Hamburg/Lübeck/Kiel and 3Clinic for General and Interventional Cardiology, University Heart Center Hamburg, Hamburg, Germany A B S T R AC T Applying ‘omics’ approaches such as genome-wide association studies (GWAS) and metabolome analyses, genes and metabolites have been identified to be associated with renal pathophysiology. Meta-analyses of GWAS from large epidemiologic cohorts uncovered several novel loci linked with estimated glomerular filtration rate and chronic kidney disease (CKD). Sophisticated analytical technologies, including mass spectrometry and nuclear magnetic resonance spectroscopy, allow the analyses of up to 4000 targeted and non-targeted metabolites in plasma, serum and urine. Several uraemic toxins were found that were increased in CKD. Among them, arginine derivatives like asymmetric dimethylarginine or tryptophane metabolites have been identified as promising candidates to target mechanisms of kidney disease progression. This review aims to summarize recent findings in clinical kidney diseases research revealed by ‘omics’ approaches with a clear focus on recent genomics and metabolomics efforts. mechanisms. Valuable insight has been acquired from candidate gene approaches to genome-wide association studies (GWAS); however, the underlying pathophysiological mechanisms do not only involve different genotypes but also changes in cellular, blood and urinary metabolites. Metabolomics complements other ‘omics’ data and as a downstream result of gene expression, changes in the metabolome are considered to reflect the activities of the cell at a functional level (Figure 1). Building on a substantive body of work over the past few years, we discuss herein the current knowledge of genomics and metabolomics in kidney diseases. G E N O M E - W I D E A S S O C I AT I O N S T U D I E S Great progress has been made in mapping genomic variations of common disease at a genome-wide level. GWAS use genomic variations, termed single nucleotide polymorphisms (SNPs), to identify regions of the genome associated with the disease status or a clinical phenotype [1, 2]. Keywords: chronic kidney disease, genomics, metabolomics, nephrology G WA S : T H E O R E T I C A L A S P E C T S INTRODUCTION Complex kidney diseases like chronic kidney disease (CKD), diabetic nephropathy (DN) or renal hypertension, involve a complex bundle of underlying pathophysiological © The Author 2013. Published by Oxford University Press on behalf of ERA-EDTA. All rights reserved. By design, GWAS provide an unbiased survey of the effects of common genetic variants. SNPs chosen for GWAS typically have a minor allele frequency (MAF) of ≥0.05 and are selected to ‘tag’ the most common haplotypes. However, the power of detection depends directly on the sample size of the study 1467 NDT PERSPECTIVES Correspondence and offprint requests to: Tanja Zeller; E-mail: [email protected]
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